# HG changeset patch
# User okorol
# Date 1427212968 14400
# Node ID f82c70f54bd76f8e66ef200e25f0149dd6a5ef02

Uploaded

diff -r 000000000000 -r f82c70f54bd7 ._ITSx
Binary file ._ITSx has changed
diff -r 000000000000 -r f82c70f54bd7 ._ITSx.xml
Binary file ._ITSx.xml has changed
diff -r 000000000000 -r f82c70f54bd7 ._ITSx_db
Binary file ._ITSx_db has changed
diff -r 000000000000 -r f82c70f54bd7 ._tool_dependencies.xml
Binary file ._tool_dependencies.xml has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,2695 @@
+#!/usr/bin/perl
+# ITSx ITS Extractor
+$app_title     = "ITSx -- Identifies ITS sequences and extracts the ITS region";
+$app_author    = "Johan Bengtsson-Palme et al., University of Gothenburg";
+$app_version   = "1.0.11";
+$app_message   = "";
+# ----------------------------------------------------------------- #
+
+# License information
+$license =
+"    ITSx - ITS Extractor -- Identifies ITS sequences and extracts the ITS region\
+    Copyright (C) 2012-2014 Johan Bengtsson-Palme et al.\
+\
+    This program is free software: you can redistribute it and/or modify\
+    it under the terms of the GNU General Public License as published by\
+    the Free Software Foundation, either version 3 of the License, or\
+    (at your option) any later version.\
+\
+    This program is distributed in the hope that it will be useful,\
+    but WITHOUT ANY WARRANTY; without even the implied warranty of\
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\
+    GNU General Public License for more details.\
+\
+    You should have received a copy of the GNU General Public License\
+    along with this program, in a file called 'license.txt'\
+    If not, see: http://www.gnu.org/licenses/.\
+";
+
+## BUGS:
+$bugs = "New features in this version ($app_version):\
+- None\
+\
+Fixed bugs in this version ($app_version):\
+- Fixed a bug causing newline characters to be occasionally skipped in the 'its1.full_and_partial.fasta' FASTA output file when the '--anchor' option was used\
+\
+Known bugs in this version ($app_version):\
+- None\
+";
+
+## OPTIONS:
+$options = "\
+-i {file} : DNA FASTA input file to investigate\
+-o {file} : Base for the names of output file(s)\
+-p {directory} : A path to a directory of HMM-profile collections representing ITS conserved regions, default is in the same directory as ITSx itself\
+--date {T or F} : Adds a date and time stamp to the output directory, off (F) by default\
+--reset {T or F} : Re-creates the HMM-database before ITSx is run, off (F) by default\
+
+Sequence selection options:\
+-t {character code} : Profile set to use for the search, see the User's Guide (comma-separated), default is all\
+-E {value} : Domain E-value cutoff for a sequence to be included in the output, default = 1e-5\
+-S {value} : Domain score cutoff for a sequence to be included in the output, default = 0\
+-N {value} : The minimal number of domains that must match a sequence before it is included, default = 2\
+--selection_priority {sum, domains, eval, score} : Selects what will be of highest priority when determining the origin of the sequence, default is sum\
+--search_eval {value} : The E-value cutoff used in the HMMER search, high numbers may slow down the process, cannot be used with the --search_score option, default is 0.01\
+--search_score {value} : The score cutoff used in the HMMER search, low numbers may slow down the process, cannot be used with the --search_eval option, default is to used E-value cutoff, not score\
+--allow_single_domain {e-value,score or F} : Allow inclusion of sequences that only find a single domain, given that they meet the given E-value and score thresholds, on with parameters 1e-9,0 by default\
+--allow_reorder {T or F} : Allows profiles to be in the wrong order on extracted sequences, off (F) by default\
+--complement {T or F} : Checks both DNA strands against the database, creating reverse complements, on (T) by default\
+--cpu {value} : the number of CPU threads to use, default is 1\
+--multi_thread {T or F} : Multi-thread the HMMER-search, on (T) if number of CPUs (--cpu option > 1), else off (F) by default\
+--heuristics {T or F} : Selects whether to use HMMER's heuristic filtering, off (F) by default\
+
+Output options:\
+--summary {T or F} : Summary of results output, on (T) by default\
+--graphical {T or F} : 'Graphical' output, on (T) by default\
+--fasta {T or F} : FASTA-format output of extracted ITS sequences, on (T) by default\
+--preserve {T or F} : Preserve sequence headers in input file instead of printing out ITSx headers, off (F) by default\
+--save_regions {SSU,ITS1,5.8S,ITS2,LSU,all,none} : A comma separated list of regions to output separate FASTA files for, 'ITS1,ITS2' by default\
+--anchor {integer or HMM} : Saves an additional number of bases before and after each extracted region. If set to 'HMM' all bases matching the corresponding HMM will be output, default = 0\
+--only_full {T or F} : If true, output is limited to full-length regions, off (F) by default\
+--partial {integer} : Saves additional FASTA-files for full and partial ITS sequences longer than the specified cutoff, default = 0 (off)\
+--concat {T or F} : Saves a FASTA-file with concatenated ITS sequences (with 5.8S removed), off (F) by default\
+--minlen {integer} : Minimum length the ITS regions must be to be outputted in the concatenated file (see above), default = 0\
+--positions {T or F} : Table format output containing the positions ITS sequences were found in, on (T) by default\
+--table {T or F} : Table format output of sequences containing probable ITS sequences, off (F) by default\
+--not_found {T or F} : Saves a list of non-found entries, on (T) by default\
+--detailed_results {T or F} : Saves a tab-separated list of all results, off (F) by default\
+--truncate {T or F} : Truncates the FASTA output to only contain the actual ITS sequences found, on (T) by default\
+--silent {T or F} : Supresses printing progress info to stderr, off (F) by default\
+--graph_scale {value} : Sets the scale of the graph output, if value is zero, a percentage view is shown, default = 0\
+--save_raw {T or F} : Saves all raw data for searches etc. instead of removing it on finish, off (F) by default\
+
+-h : displays this help message\
+--help : displays this help message\
+--bugs : displays the bug fixes and known bugs in this version of ITSx\
+--license : displays licensing information\
+";
+
+
+## Print title message
+print STDERR "$app_title\nby $app_author\nVersion: $app_version\n$app_message";
+print STDERR "-----------------------------------------------------------------\n";
+
+## Setup default variable values
+use List::Util qw(first max maxstr min minstr reduce shuffle sum);
+
+$bindir = $0;
+$bindir =~ s/_x//;
+$input = "";
+$output = "ITSx_out";
+$hmmscan = "";
+$profileDB = "$bindir\_db/HMMs";
+$type = "all";
+$E = 1e-5;
+$S = 0;
+$N = 2;
+$priority = "sum";
+$search_eval = 0.01;
+$search_score = "";
+$allow_single_E = 1e-9;
+$allow_single_score = 0;
+#$allow_single_E = -1;   # Turns off single-domain matching by E-value
+#$allow_single_score = 0;   # Turns off single-domain matching by score
+$allow_reorder = 0;
+$complement = 1;
+$cpu = 1;
+$multi_thread = "unset";
+$heuristics = 0;
+$out_sum = 1;
+$out_graph = 1;
+$out_fasta = 1;
+$out_preserve = 0;
+$out_ssu = 0;
+$out_its1 = 1;
+$out_its2 = 1;
+$out_58S = 0;
+$out_lsu = 0;
+$out_pos = 1;
+$out_table = 0;
+$out_not = 1;
+$out_date = 0;
+$out_joined = 0;
+$out_results = 0;
+$out_partial = 0;
+$out_concat = 0;
+$concat_minlen = 0;
+$truncate = 1;
+$anchor = 0;
+$only_full = 0;
+$graph_scale = 0;
+$debug = 0;
+$reset = 0;
+
+## Read command-line options
+for ($i = 0; $i <= scalar(@ARGV); $i++) {   # Goes through the list of arguments
+  $arg = @ARGV[$i];   # Stores the current argument in $arg
+
+  if ($arg eq "-i") {   # Read input files from -i flag
+    $i++;
+    $input = @ARGV[$i];
+  }
+  if ($arg eq "-o") {   # Read output files from -o flag
+    $i++;
+    $output = @ARGV[$i];
+  }
+  if ($arg eq "-p") {   # Read profile database from -p flag
+    $i++;
+    $profileDB = @ARGV[$i];
+  }
+  if ($arg eq "--hmmscan") {   # Read pre-computed hmmscan output file from --hmmscan flag ('undocumented' feature)
+    $i++;
+    $hmmscan = @ARGV[$i];
+  }
+  if ($arg eq "--date") {   # Determine whether or not to add a date stamp based on the --date flag
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Ff0]/) {   # Check if argument begins with "F", "f", or "0"
+      $out_date = 0;
+    } else {
+      $out_date = 1;
+    }
+  }
+  if ($arg eq "--reset") {   # Reset HMM database?
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Ff0]/) {   # Check if argument begins with "F", "f", or "0"
+      $reset = 0;
+    } else {
+      $reset = 1;
+    }
+  }
+
+  if ($arg eq "-t") {   # Select what types of ITSs to look for using the -t flag
+    $i++;
+    $type = @ARGV[$i];
+  }
+  if ($arg eq "-E") {   # Set the E-value cutoff using the -E flag
+    $i++;
+    $E = @ARGV[$i];
+  }
+  if ($arg eq "-S") {   # Set the score cutoff using the -S flag
+    $i++;
+    $S = @ARGV[$i];
+  }
+  if ($arg eq "-N") {   # Set the number of found domains cutoff using the -N flag
+    $i++;
+    $N = @ARGV[$i];
+  }
+  if ($arg eq "--selection_priority") {   # Set how to order the ITS types using the --selection_priority flag
+    $i++;
+    $priority = @ARGV[$i];
+  }
+  if ($arg eq "--search_eval") {   # Set the E-value cutoff for the HMMER search using the --search_eval flag
+    $i++;
+    $search_eval = @ARGV[$i];
+    $search_score = "";   #  Turns off score cutoff
+  }
+  if ($arg eq "--search_score") {   # Set the score cutoff for the HMMER search using the --search_score flag
+    $i++;
+    $search_score = @ARGV[$i];
+    $search_eval = "";   #  Turns off E-value cutoff
+  }
+  if ($arg eq "--allow_single_domain") {   # Determine whether or not to allow single domain matches based on the --allow_single_domain flag
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Ff0]/) {   # Check if argument begins with "F", "f", or "0"
+      $allow_single_E = -1;   # Turns off single-domain matching by E-value
+      $allow_single_score = 0;   # Turns off single-domain matching by score
+    } else {
+      ($allow_single_E,$allow_single_score) = split(',',@ARGV[$i]);   # Turns on single-domain matching, assigning the first given value as the E-value cutoff, and the second as score cutoff
+    }
+  }
+  if ($arg eq "--allow_reorder") {   # Determine whether or not to allow the domains to be in the wrong order based on the --allow_reorder flag
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $allow_reorder = 1;
+    } else {
+      $allow_reorder = 0;
+    }
+  }
+  if ($arg eq "--complement") {   # Determine whether or not to scan the complementary strand of the input file based on the --complement flag
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $complement = 1;
+    } else {
+      $complement = 0;
+    }
+  }
+  if ($arg eq "--cpu") {   # Set the number of CPUs to use based on the --cpu flag
+    $i++;
+    $cpu = @ARGV[$i];
+  }
+  if ($arg eq "--multi_thread") {   # Determine whether or not to multi-thread the HMMER step based on the --multi_thread flag
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $multi_thread = 1;
+    } else {
+      $multi_thread = 0;
+    }
+  }
+  if ($arg eq "--heuristics") {   # Determine whether or not to use HMMER's heuristic filtering based on the --heuristics flag
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $heuristics = 1;
+    } else {
+      $heuristics = 0;
+    }
+  }
+
+  if ($arg eq "--summary") {   # Determine whether or not to output a summary based on the --summary flag
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $out_sum = 1;
+    } else {
+      $out_sum = 0;
+    }
+  }
+  if ($arg eq "--graphical") {   # Determine whether or not to output a graphical representation of matches based on the --graphical flag
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $out_graph = 1;
+    } else {
+      $out_graph = 0;
+    }
+  }
+  if ($arg eq "--detailed_results") {   # Determine whether or not to output a detailed results list, based on the --detailed_results flag
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $out_results = 1;
+    } else {
+      $out_results = 0;
+    }
+  }
+  if ($arg eq "--partial") {   # Set the full-and-partial cutoff
+    $i++;
+    $out_partial = @ARGV[$i];
+  }
+  if ($arg eq "--anchor") {   # Set the length of the sequence "anchors"
+    $i++;
+    $anchor = @ARGV[$i];
+  }
+  if ($arg eq "--only_full") {   # Output only full-length regions
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $only_full = 1;
+    } else {
+      $only_full = 0;
+    }
+  }
+  if ($arg eq "--save_regions") {   # Determine which regions to output FASTA files for based on the --save_regions flag
+    $i++;
+    @save_regions = split(',',uc(@ARGV[$i]));
+    $out_ssu = 0;
+    $out_its1 = 0;
+    $out_its2 = 0;
+    $out_58S = 0;
+    $out_lsu = 0;
+    foreach $save_region (@save_regions) {
+      if ($save_region eq "SSU") {
+	$out_ssu = 1;
+      }
+      if ($save_region eq "ITS1") {
+	$out_its1 = 1;
+      }
+      if ($save_region eq "5.8S") {
+	$out_58S = 1;
+      }
+      if ($save_region eq "ITS2") {
+	$out_its2 = 1;
+      }
+      if ($save_region eq "LSU") {
+	$out_lsu = 1;
+      }
+      if ($save_region eq "ALL") {
+	$out_ssu = 1;
+	$out_its1 = 1;
+	$out_its2 = 1;
+	$out_58S = 1;
+	$out_lsu = 1;
+      }
+      if ($save_region eq "NONE") {
+	$out_ssu = 0;
+	$out_its1 = 0;
+	$out_its2 = 0;
+	$out_58S = 0;
+	$out_lsu = 0;
+      }
+    }
+  }
+  if ($arg eq "--positions") {   # Determine whether or not to output a positions file based on the --positions flag
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $out_pos = 1;
+    } else {
+      $out_pos = 0;
+    }
+  }
+  if ($arg eq "--concat") {   # Determine whether or not to output a concatednated ITS1 + ITS2 file
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $out_concat = 1;
+    } else {
+      $out_concat = 0;
+    }
+  }
+  if ($arg eq "--minlen") {   # Set the min length of the combined ITS1 and ITS2 sequences for concatenation
+    $i++;
+    $concat_minlen = @ARGV[$i];
+  }
+  if ($arg eq "--fasta") {   # Determine whether or not to output FASTA-files based on the --fasta flag
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $out_fasta = 1;
+    } else {
+      $out_fasta = 0;
+    }
+  }
+  if ($arg eq "--preserve") {   # Determine whether or not to preserve FASTA-headers based on the --preserve flag
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $out_preserve = 1;
+    } else {
+      $out_preserve = 0;
+    }
+  }
+  if ($arg eq "--joined") {   # Determine whether or not to output a FASTA-file containing ALL sorts of output sequences (for debugging)
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $out_joined = 1;
+    } else {
+      $out_joined = 0;
+    }
+  }
+  if ($arg eq "--table") {   # Determine whether or not to output tables of all potential matches based on the --table flag
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $out_table = 1;
+    } else {
+      $out_table = 0;
+    }
+  }
+  if ($arg eq "--not_found") {   # Determine whether or not to output a list of sequences that are not ITSs based on the --not_found flag
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $out_not = 1;
+    } else {
+      $out_not = 0;
+    }
+  }
+  if ($arg eq "--silent") {   # Determine whether or not to output anything to the screen based on the --silent flag
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $silent = 1;
+    } else {
+      $silent = 0;
+    }
+  }
+  if ($arg eq "--graph_scale") {   # Set the scale of the graphical output based on the --graph_scale flag
+    $i++;
+    $graph_scale = @ARGV[$i];
+  }
+  if ($arg eq "--save_raw") {   # Determine whether or not to save all the raw intermediate data based on the --save_raw flag
+    $i++;
+    if (substr(@ARGV[$i],0,1) =~ m/^[Tt1]/) {   # Check if argument begins with "T", "t", or "1"
+      $save_raw = 1;
+    } else {
+      $save_raw = 0;
+    }
+  }
+
+  ## If "-h" or "--help" are among the options, output usage data and options
+  if (($arg eq "-h") || ($arg eq "--help")) {
+    print "Usage: ITSx -i <input file> -o <output file>\nOptions:$options";
+    print "-----------------------------------------------------------------\n";
+    exit;   # Exit ITSx
+  }
+
+  ## If "--bugs" is among the options, output bugs and features information
+  if ($arg eq "--bugs") {
+    print "$bugs\n";
+    exit;   # Exit ITSx
+  }
+
+  ## If "--license" is among the options, output license information
+  if ($arg eq "--license") {
+    print "$license\n";
+    exit;   # Exit ITSx
+  }
+
+  if ($arg eq "--debug") {   # Run ITSx in debug mode
+    $debug = 1;
+  }
+  if ($arg eq "--pipeline") {   # Run ITSx in pipeline mode
+    $pipeline = 1;
+  }
+}
+
+## Setup some variables dependent on input
+
+if ($multi_thread eq "unset") {   # If the multi-thread option is not set
+  if ($cpu > 1) {   # Then if the number of CPUs used > 1, then multi-thread HMMER searches
+    $multi_thread = 1;
+  } else {   # Else, run HMMER searches sequentially on one CPU
+    $multi_thread = 0;
+  }
+}
+
+if ($hmmscan ne "") {   # If a pre-computed hmmscan output is supplied
+  $output = $hmmscan;   # Then set the base of the output directory name to be the same as that hmmscan output file
+}
+
+## Check for binaries
+
+chomp($path = `which hmmpress`);   # Get the path for hmmpress
+if ($path eq "") {   # If the path is empty, then show an error message and exit ITSx
+  print STDERR "FATAL ERROR :: Could not locate HMMER binaries! It seems that hmmpress is not installed properly.\
+Consult the manual for installation instructions. Note that HMMER3 is required. Previous HMMER-versions will not work.\
+This error is fatal, and ITSx will now abort.\n";
+  print STDERR "-----------------------------------------------------------------\n";
+  exit;
+}
+
+chomp($path = `which hmmscan`);   # Get the path for hmmscan
+if ($path eq "") {   # If the path is empty, then show an error message and exit ITSx
+  print STDERR "FATAL ERROR :: Could not locate HMMER binaries! It seems that hmmscan is not installed properly.\
+Consult the manual for installation instructions. Note that HMMER3 is required. Previous HMMER-versions will not work.\
+This error is fatal, and ITSx will now abort.\n";
+  print STDERR "-----------------------------------------------------------------\n";
+  exit;
+}
+
+
+## Check for database
+chomp($errormsg = `ls $profileDB* 2>&1 1>/dev/null`);   # Get the error msg when looking for the profile database
+if (substr($errormsg,0,4) eq "ls: ") {   # If the error message begins with "ls: ", then show an error message and exit ITSx
+  print STDERR "FATAL ERROR :: The specified profile database could not be found.\
+Consult the manual for installation instructions.\
+This error is fatal, and ITSx will now abort.\n";
+  print STDERR "-----------------------------------------------------------------\n";
+  exit;
+}
+
+if ($pipeline == 0) {   # If ITSx is not run in pipeline mode (i.e. from ITSx)
+  if ($out_date == 1) {   # If a date and time stamp should be supplied
+    ($sec,$min,$hour,$mday,$mon,$year,$wday,$yday,$isdst) = localtime(time);   # Get the date and time
+    $year = $year + 1900;   # Format the year
+    $mon = $mon + 1;   # Format the month
+    if ($mon < 10) {   # Add a zero to the month, if needed
+      $mon = "0" . $mon;
+    }
+    if ($mday < 10) {   # Add a zero to the day, if needed
+      $mday = "0" . $mday;
+    }
+    if ($hour < 10) {   # Add a zero to the hour, if needed
+      $hour = "0" . $hour;
+    }
+    if ($min < 10) {   # Add a zero to the minute, if needed
+      $min = "0" . $min;
+    }
+    $outputDate = ".$year\-$mon\-$mday\_$hour.$min";   # Create a date and time stamp
+    $outputDate =~ s./.-.g;   # Remove any potential slashes in the output name (as this will confuse ITSx's file naming)
+    $output = $output . $outputDate;   # Add the date and time stamp top the output base name
+  }
+}
+
+$tempDir = "ITSx_temp_directory__$output";   # Setup a temporary directory variable
+$tempDir =~ s./.-.g;   # Remove any potential slashes in the output name (as this will confuse ITSx's file naming)
+
+if ($pipeline == 0) {   # If not running in pipeline mode
+  ## Create a summary file
+  if ($out_sum == 1) {   # If summary output is on
+    $now = localtime;   # Get the current time
+    open (SUMMARY, ">$output.summary.txt");   # Create the summary file
+    print SUMMARY "ITSx run started at $now.\n";   # Output the starting time for the analysis
+    print SUMMARY "-----------------------------------------------------------------\n";
+    close (SUMMARY);   # Close summary file
+  }
+}
+
+## Create a temporary directory for ITSx
+if ($pipeline == 0) {   # If ITSx is not run in pipeline mode (i.e. from ITSx)
+  `mkdir $tempDir 2> /dev/null`;   # Create a temporary directory
+}
+
+
+## Prepare profile database
+## Get the current time and output info message
+$now = localtime;
+if ($silent == 0) {
+  print STDERR "$now : Preparing HMM database (should be quick)...\n";
+}
+
+## Setup profile index
+%profileIndex = {};
+
+# A = Alveolata
+# B = Bryophyta
+# C = Bacillariophyta
+# D = Amoebozoa
+# E = Euglenozoa
+# F = Fungi
+# G = Chlorophyta (green algae)
+# H = Rhodophyta (red algae)
+# I = Phaeophyceae (brown algae)
+# L = Marchantiophyta (liverworts)
+# M = Metazoa
+# N = Microsporidia
+# O = Oomycota
+# P = Haptophyceae (prymnesiophytes)
+# Q = Raphidophyceae
+# R = Rhizaria
+# S = Synurophyceae
+# T = Tracheophyta (higher plants)
+# U = Eustigmatophyceae
+# X = Apusozoa
+# Y = Parabasalia
+
+$profileIndex{"A"} = "alveolates";
+$profileIndex{"B"} = "bryophyta";
+$profileIndex{"C"} = "bacillariophyta";
+$profileIndex{"D"} = "amoebozoa";
+$profileIndex{"E"} = "euglenozoa";
+$profileIndex{"F"} = "fungi";
+$profileIndex{"G"} = "chlorophyta";
+$profileIndex{"H"} = "rhodophyta";
+$profileIndex{"I"} = "phaeophyceae";
+$profileIndex{"J"} = "undefined";
+$profileIndex{"K"} = "undefined";
+$profileIndex{"L"} = "marchantiophyta";
+$profileIndex{"M"} = "metazoa";
+$profileIndex{"N"} = "microsporidia";
+$profileIndex{"O"} = "oomycota";
+$profileIndex{"P"} = "haptophyceae";
+$profileIndex{"Q"} = "raphidophyceae";
+$profileIndex{"R"} = "rhizaria";
+$profileIndex{"S"} = "synurophyceae";
+$profileIndex{"T"} = "tracheophyta";
+$profileIndex{"U"} = "eustigmatophyceae";
+$profileIndex{"V"} = "undefined";
+$profileIndex{"W"} = "undefined";
+$profileIndex{"X"} = "apusozoa";
+$profileIndex{"Y"} = "parabasalia";
+$profileIndex{"Z"} = "undefined";
+
+
+@profileList = split(',',uc($type));   # Get the list of profile types
+foreach $entry (@profileList) {   # Go through the entered types
+  if (($entry eq "ALL") || ($entry eq ".")) {   # If "all" among the entries
+    push(@profileSet,"A");   # Add the alveolates profiles to the investigation set
+    push(@profileSet,"B");   # Add the bryophytes profiles to the investigation set
+    push(@profileSet,"C");   # Add the bacillariophyta profiles to the investigation set
+    push(@profileSet,"D");   # Add the amoebozoa profiles to the investigation set
+    push(@profileSet,"E");   # Add the euglenozoa profiles to the investigation set
+    push(@profileSet,"F");   # Add the fungi profiles to the investigation set
+    push(@profileSet,"G");   # Add the green algae profiles to the investigation set
+    push(@profileSet,"H");   # Add the red algae profiles to the investigation set
+    push(@profileSet,"I");   # Add the brown algae profiles to the investigation set
+    push(@profileSet,"L");   # Add the liverworts profiles to the investigation set
+    push(@profileSet,"M");   # Add the metazoa profiles to the investigation set
+    #push(@profileSet,"N");   # Add the microsporidia profiles to the investigation set
+    push(@profileSet,"O");   # Add the oomycetes profiles to the investigation set
+    push(@profileSet,"P");   # Add the prymnesiophytes profiles to the investigation set
+    push(@profileSet,"Q");   # Add the raphidophytes profiles to the investigation set
+    push(@profileSet,"R");   # Add the rhizaria profiles to the investigation set
+    push(@profileSet,"S");   # Add the synurophyceae profiles to the investigation set
+    push(@profileSet,"T");   # Add the tracheophyta (higher plants) profiles to the investigation set
+    push(@profileSet,"U");   # Add the eustigmatophytes profiles to the investigation set
+    #push(@profileSet,"X");   # Add the apusozoa profiles to the investigation set
+    #push(@profileSet,"Y");   # Add the parabasalia profiles to the investigation set
+  } else {
+    if (length($entry) == 1) {  # If the name has only one character
+      if ($entry =~ m/[ABCDERFHILMNOPQRSTUXY]/) {  # If the selected set exists
+	push(@profileSet,$entry);   # Add the selected profiles to the investigation set
+      }
+    } else {
+      if ($entry =~ m/ALVEOL/) {
+	push(@profileSet,"A");   # Add the alveolates profiles to the investigation set
+      }
+      if ($entry =~ m/BRYO/) {
+	push(@profileSet,"B");   # Add the bryophytes profiles to the investigation set
+      }
+      if ($entry =~ m/MOSS/) {
+	push(@profileSet,"B");   # Add the bryophytes profiles to the investigation set
+      }
+      if ($entry =~ m/BACILL/) {
+	push(@profileSet,"C");   # Add the bacillariophyta profiles to the investigation set
+      }
+      if ($entry =~ m/DIATOM/) {
+	push(@profileSet,"C");   # Add the bacillariophyta profiles to the investigation set
+      }
+      if ($entry =~ m/AMOEB/) {
+	push(@profileSet,"D");   # Add the amoebozoa profiles to the investigation set
+      }
+      if ($entry =~ m/EUGLE/) {
+	push(@profileSet,"E");   # Add the euglenozoa profiles to the investigation set
+      }
+      if ($entry =~ m/FUNG/) {
+	push(@profileSet,"F");   # Add the fungi profiles to the investigation set
+      }
+      if ($entry =~ m/GREEN/) {
+	push(@profileSet,"G");   # Add the green algae profiles to the investigation set
+      }
+      if ($entry =~ m/CHLORO/) {
+	push(@profileSet,"G");   # Add the green algae profiles to the investigation set
+      }
+      if ($entry =~ m/RED-AL/) {
+	push(@profileSet,"H");   # Add the red algae profiles to the investigation set
+      }
+      if ($entry =~ m/RHODO/) {
+	push(@profileSet,"H");   # Add the red algae profiles to the investigation set
+      }
+      if ($entry =~ m/BROWN/) {
+	push(@profileSet,"I");   # Add the brown algae profiles to the investigation set
+      }
+      if ($entry =~ m/PHAEOP/) {
+	push(@profileSet,"I");   # Add the brown algae profiles to the investigation set
+      }
+      if ($entry =~ m/LIVER/) {
+	push(@profileSet,"L");   # Add the liverworts profiles to the investigation set
+      }
+      if ($entry =~ m/MARCH/) {
+	push(@profileSet,"L");   # Add the liverworts profiles to the investigation set
+      }
+      if ($entry =~ m/METAZ/) {
+	push(@profileSet,"M");   # Add the metazoa profiles to the investigation set
+      }
+      if ($entry =~ m/ANIMAL/) {
+	push(@profileSet,"M");   # Add the metazoa profiles to the investigation set
+      }
+      if ($entry =~ m/MICROSPOR/) {
+	push(@profileSet,"N");   # Add the microsporidia profiles to the investigation set
+      }
+      if ($entry =~ m/OOMYC/) {
+	push(@profileSet,"O");   # Add the oomycetes profiles to the investigation set
+      }
+      if ($entry =~ m/PRYMN/) {
+	push(@profileSet,"P");   # Add the prymnesiophytes profiles to the investigation set
+      }
+      if ($entry =~ m/HAPTO/) {
+	push(@profileSet,"P");   # Add the prymnesiophytes profiles to the investigation set
+      }
+      if ($entry =~ m/RAPHID/) {
+	push(@profileSet,"Q");   # Add the raphidophytes profiles to the investigation set
+      }
+      if ($entry =~ m/RHIZA/) {
+	push(@profileSet,"R");   # Add the rhizaria profiles to the investigation set
+      }
+      if ($entry =~ m/SYNUR/) {
+	push(@profileSet,"S");   # Add the synurophyceae profiles to the investigation set
+      }
+      if ($entry =~ m/TRACHE/) {
+	push(@profileSet,"T");   # Add the tracheophyta profiles to the investigation set
+      }
+      if ($entry =~ m/PLANTS/) {
+	push(@profileSet,"T");   # Add the tracheophyta profiles to the investigation set
+      }
+      if ($entry =~ m/EUSTIG/) {
+	push(@profileSet,"U");   # Add the eustigmatophytes profiles to the investigation set
+      }
+      if ($entry =~ m/APUSO/) {
+	push(@profileSet,"X");   # Add the apusozoa profiles to the investigation set
+      }
+      if ($entry =~ m/PARAB/) {
+	push(@profileSet,"Y");   # Add the parabasalia profiles to the investigation set
+      }
+    }
+  }
+}
+
+foreach $set (@profileSet) {   # For each set of profiles in the the full profile set for investigation
+  $hmmPath = $profileDB . "/" . $set . ".hmm";   # Determine the path to the HMM-file
+  chomp($modelCount = `grep -c "//" $hmmPath`);   # Count the number of models in the HMM-file
+  push(@modelCount,$modelCount);   # Add the number of models in this HMM-file to the list of model counts
+  if ($reset == 1) {
+    `rm -f $hmmPath.h3* 2> /dev/null`;   # Delete old HMM-files
+    `hmmpress $hmmPath 2> /dev/null`;   # Prepare the HMM-file for searching
+    ## Redirecting stderr is a quick and dirty solution to get rid of the messages... Could be made more elegant
+  }
+}
+
+## Clean-up input files and create complementary strand if needed
+## Get the current time and output an info message
+$now = localtime;
+if ($silent == 0) {
+  print STDERR "$now : Checking and handling input sequence data (should not take long)...\n";
+}
+
+## Open the summary file for writing
+if ($out_sum == 1) {   # If summary output is on
+  open (SUMMARY, ">>$output.summary.txt");   # Append to the summary file
+}
+
+if ($input ne "") {   # If an input file is given
+  ## Read from file
+  open (SEQUENCES, $input);   # Open the input file for reading
+  open (MAIN, ">$tempDir/main.fasta");   # Create a temporary file for storing the cleaned sequences representing the main strand
+  open (COMPLEMENT, ">$tempDir/complement.fasta");   # Create a temporary file for storing the cleaned sequences representing the complementary strand
+  $inputSequenceCount = 0;   # Reset input sequence counter
+  while ($sequence = <SEQUENCES>) {   # Repeat for every line in the input file
+    chomp($sequence);   # Truncate any potential line feeds
+    $sequence =~ tr/\r\n//d;  # Remove all carriage return and new line characters
+    if (substr($sequence,0,1) eq ">") {   # If a new FASTA entry is found in the input file
+      $inputSequenceCount++;   # Add one to the input sequence counter
+      print MAIN $mainSeq . "\n";   # Write the previous main DNA sequence to the main sequence file
+      print MAIN $sequence . " main\n";   # Write the definition line of the new sequence to the main sequence file
+      $sequenceDB{"$sequenceID"} = $mainSeq;  # Add sequence to sequence database
+      $headers{"$sequenceID"} = $header;  # Add the header to the header database
+      push(@sequenceOrder,$sequenceID);  # Add this sequence ID to the ordered list of sequences
+      ($sequenceID) = split(" ",substr($sequence,1));
+      $header = $sequence;  # Save the sequence header
+      $mainSeq = "";   # Empty the main sequence entry
+      if ($complement == 1) {   # If the complementary file should be written
+	$complementSeq = reverse($complementSeq);   # Reverse the complementary DNA sequence
+	print COMPLEMENT $complementSeq . "\n";   # Write the previous complementary DNA sequence to the complementary sequence file
+	print COMPLEMENT $sequence . " complement\n";   # Write the definition line of the new sequence to the complement sequence file
+	$complementSeq = "";   # Empty the complementary sequence entry
+      }
+    } else {    # If this line is just a continuation of the current DNA sequence
+      $mseq = $sequence;   # Store this part of the DNA sequence in the intermediate varaible $mseq
+      $mseq =~ s/[ .-]//g;   # Remove any gap characters present in this sequence part (good if input was an alignment)
+      $mseq =~ tr/[a-z]/[A-Z]/;   # Make all letters uppercase
+      $mseq =~ s/[^A-Z]//g;  # Remove all non-alphabetic characters
+      $mseq =~ tr/U/T/;   # Exchanges U:s for T:s (Uracil to Thymine, good if input was RNA sequence)
+      $mainSeq = $mainSeq . $mseq;   # Add the intermediate DNA sequence to the end of the main DNA sequence entry
+      
+      if ($complement == 1) {   # If the complementary file should be written
+	$cseq = $sequence;   # Store this part of the DNA sequence in the intermediate varaible $cseq
+	$cseq =~ s/[ .-]//g;   # Remove any gap characters present in this sequence part (good if input was an alignment)
+	$cseq =~ tr/[a-z]/[A-Z]/;   # Make all letters uppercase
+	$cseq =~ s/[^A-Z]//g;  # Remove all non-alphabetic characters
+	$cseq =~ tr/ACGTURYSWKMBDHVN/TGCAAYRWSMKVHDBN/;   # Replace all characters with its complementary base
+	$complementSeq = $complementSeq . $cseq;   # Add the intermediate DNA sequence to the end of the complementary DNA sequence entry
+      }
+    }
+  }
+  ## When the input file's end is reached
+  print MAIN $mainSeq . "\n";   # Write the last main DNA sequence to the main sequence file
+  if ($complement == 1) {   # If the complementary file should be written
+    $complementSeq = reverse($complementSeq);   # Reverse the complementary DNA sequence
+    print COMPLEMENT $complementSeq . "\n";   # Write the last complementary DNA sequence to the complementary sequence file
+  }
+  $sequenceDB{"$sequenceID"} = $mainSeq;  # Add sequence to sequence database
+  $headers{"$sequenceID"} = $header;  # Add the header to the header database
+  push(@sequenceOrder,$sequenceID);  # Add this sequence ID to the ordered list of sequences
+  $mainSeq = "";   # Empty the main sequence entry
+  $complementSeq = "";   # Empty the complementary sequence entry
+  close (SEQUENCES);   # Close the sequence input file
+  close (COMPLEMENT);   # Close the complementary output file
+  close (MAIN);   # Close the main output file
+} else {   # If no input file is supplied, then read from stdin instead
+  $input = "$tempDir/main.fasta";   # Set up a temporary input file path
+  open (MAIN, ">$tempDir/main.fasta");   # Create a temporary file for storing the cleaned sequences representing the main strand
+  open (COMPLEMENT, ">$tempDir/complement.fasta");   # Create a temporary file for storing the cleaned sequences representing the complementary strand
+  $inputSequenceCount = 0;   # Reset input sequence counter
+  while ($sequence = <STDIN>) {   # Repeat for every line in the standard input
+    chomp($sequence);   # Truncate any potential line feeds
+    if (substr($sequence,0,1) eq ">") {   # If a new FASTA entry is found in the input
+      $inputSequenceCount++;   # Add one to the input sequence counter
+      print MAIN $mainSeq . "\n";   # Write the previous main DNA sequence to the main sequence file
+      print MAIN $sequence . " main\n";   # Write the definition line of the new sequence to the main sequence file
+      $sequenceDB{"$sequenceID"} = $mainSeq;  # Add sequence to sequence database
+      $headers{"$sequenceID"} = $header;  # Add the header to the header database
+      push(@sequenceOrder,$sequenceID);  # Add this sequence ID to the ordered list of sequences
+      $sequenceID = split(" ",substr($sequence,1));
+      $header = $sequence;  # Save the sequence header
+      $mainSeq = "";   # Empty the main sequence entry
+      if ($complement == 1) {   # If the complementary file should be written
+	$complementSeq = reverse($complementSeq);   # Reverse the complementary DNA sequence
+	print COMPLEMENT $complementSeq . "\n";   # Write the previous complementary DNA sequence to the complementary sequence file
+	print COMPLEMENT $sequence . " complement\n";   # Write the definition line of the new sequence to the complement sequence file
+	$complementSeq = "";   # Empty the complementary sequence entry
+      }
+    } else {    # If this line is just a continuation of the current DNA sequence
+      $mseq = $sequence;   # Store this part of the DNA sequence in the intermediate varaible $mseq
+      $mseq =~ s/[ .-]//g;   # Remove any gap characters present in this sequence part (good if input was an alignment)
+      $mseq =~ tr/[a-z]/[A-Z]/;   # Make all letters uppercase
+      $mseq =~ s/[^A-Z]//g;  # Remove all non-alphabetic characters
+      $mseq =~ tr/U/T/;   # Exchanges U:s for T:s (Uracil to Thymine, good if input was RNA sequence)
+      $mainSeq = $mainSeq . $mseq;   # Add the intermediate DNA sequence to the end of the main DNA sequence entry
+      
+      if ($complement == 1) {   # If the complementary file should be written
+	$cseq = $sequence;   # Store this part of the DNA sequence in the intermediate varaible $cseq
+	$cseq =~ s/[ .-]//g;   # Remove any gap characters present in this sequence part (good if input was an alignment)
+	$cseq =~ tr/[a-z]/[A-Z]/;   # Make all letters uppercase
+	$cseq =~ s/[^A-Z]//g;  # Remove all non-alphabetic characters
+	$cseq =~ tr/ACGTURYSWKMBDHVN/TGCAAYRWSMKVHDBN/;   # Replace all characters with its complementary base
+	$complementSeq = $complementSeq . $cseq;   # Add the intermediate DNA sequence to the end of the complementary DNA sequence entry
+      }
+    }
+  }
+  ## When the input file's end is reached
+  print MAIN $mainSeq . "\n";   # Write the last main DNA sequence to the main sequence file
+  if ($complement == 1) {   # If the complementary file should be written
+    $complementSeq = reverse($complementSeq);   # Reverse the complementary DNA sequence
+    print COMPLEMENT $complementSeq . "\n";   # Write the last complementary DNA sequence to the complementary sequence file
+  }
+  $sequenceDB{"$sequenceID"} = $mainSeq;  # Add sequence to sequence database
+  $headers{"$sequenceID"} = $header;  # Add the header to the header database
+  push(@sequenceOrder,$sequenceID);  # Add this sequence ID to the ordered list of sequences
+  $mainSeq = "";   # Empty the main sequence entry
+  $complementSeq = "";   # Empty the complementary sequence entry
+  close (COMPLEMENT);   # Close the complementary output file
+  close (MAIN);   # Close the main output file
+}
+
+if ($out_sum == 1) {   # If summary output should be written
+  print SUMMARY "Number of sequences in input file:       \t$inputSequenceCount\n";   # Write info on the number of input sequences to the summary file
+}
+
+
+## Perform HMM-scan
+if ($hmmscan eq "") {   # If a pre-computed hmmscan output file is not supplied
+  if ($heuristics == 0) {  # If HMMER's heuristic filtering should not be used
+    $heurMax = "--max";  # Set the heurMax to "--max" (indicating that HMMER should turn off filtering)
+  } else {
+    $heurMax = "";  # Set the heurMax to empty (indicating that HMMER should turn on filtering)
+  }
+  if ($multi_thread == 0) {   # If multi-threading is off
+    ## Get the current time and output info message
+    $now = localtime;
+    if ($silent == 0) {
+      print STDERR "$now : Comparing sequences to HMM database (this may take a long while)...\n";
+    }
+    foreach $set (@profileSet) {   # Go sequentially through all profile sets to search for
+      $hmmPath = $profileDB . "/" . $set . ".hmm";   # Set the path to the HMM-file of the current set
+      if ($search_eval ne "") {   # If E-value cutoff is use for the search
+	hmmerSearch("hmmscan --cpu $cpu $heurMax -E $search_eval $hmmPath $tempDir/main.fasta","$tempDir/main.$set.hmmscan","M",$set);   # Call HMMER with E-value cutoff
+      } else {   # If score cutoff is use for the search
+	hmmerSearch("hmmscan --cpu $cpu $heurMax -T $search_score $hmmPath $tempDir/main.fasta","$tempDir/main.$set.hmmscan","M",$set);   # Call HMMER with score cutoff
+      }
+      if ($complement == 1) {   # If the complementary file should be scanned
+	if ($search_eval ne "") {   # If E-value cutoff is use for the search
+	  hmmerSearch("hmmscan --cpu $cpu $heurMax -E $search_eval $hmmPath $tempDir/complement.fasta","$tempDir/complement.$set.hmmscan","C",$set);   # Call HMMER with E-value cutoff
+	} else {   # If score cutoff is use for the search
+	  hmmerSearch("hmmscan --cpu $cpu $heurMax -T $search_score $hmmPath $tempDir/complement.fasta","$tempDir/complement.$set.hmmscan","C",$set);   # Call HMMER with score cutoff
+	}
+      }
+    }
+  } else {   # If multi-threading is on
+    ## Get the current time and output info message
+    $now = localtime;
+    if ($silent == 0) {
+      print STDERR "$now : Doing paralellised comparison to HMM database (this may take a long while)...\n";
+    }
+
+    ## Determining number of cpus per thread
+    if ($complement == 1) {   # If the complementary file should be scanned
+      $hmmcpu = int(0.5 * $cpu / scalar(@profileSet));   # Assign X CPUs to each thread, X = 0.5 * (TOTAL_CPUs_USED) / (TOTAL_NUMBER_OF_PROFILE_SETS)
+    } else {   # If the complementary file should not be scanned
+      $hmmcpu = int($cpu / scalar(@profileSet));   # Assign X CPUs to each thread, X = (TOTAL_CPUs_USED) / (TOTAL_NUMBER_OF_PROFILE_SETS)
+    }
+    if ($hmmcpu < 1) {   # If the number of CPUs per thread is smaller than 1
+      $hmmcpu = 1;   # Give each thread at least one CPU to work on
+    }
+    ## Main strand searches...
+    $cpuCount = 0;
+    foreach $set (@profileSet) {   # Go through each profile set to investigate
+      if ($cpuCount < $cpu) {
+	$cpuCount++;
+	$pid = fork();   # Fork off a copy of this process for this set
+      } else {
+	$deceasedPID = wait();   # Wait until a PID is finished, and gather its number
+	$pid = fork();   # Fork off a copy of this process for this set
+      }
+      if ($pid != 0) {   # If this is the parent process
+	push(@pids,$pid);   # Add the new process ID to the list of active process IDs
+      } else {   # If this is the new child process
+	$hmmPath = $profileDB . "/" . $set . ".hmm";   # Set the path to the HMM-file of the current set
+	if ($search_eval ne "") {   # If E-value cutoff is use for the search
+	  hmmerSearch("hmmscan --cpu $hmmcpu $heurMax -E $search_eval $hmmPath $tempDir/main.fasta","$tempDir/main.$set.hmmscan","M",$set);   # Call HMMER with E-value cutoff
+	} else {   # If score cutoff is use for the search
+	  hmmerSearch("hmmscan --cpu $hmmcpu $heurMax -T $search_score $hmmPath $tempDir/main.fasta","$tempDir/main.$set.hmmscan","M",$set);   # Call HMMER with score cutoff
+	}
+	## Stop child process...
+	exit;   # Exits the child process
+      }
+    }
+    ## Revese strand searches...
+    if ($complement == 1) {   # If the complementary file should be scanned
+      foreach $set (@profileSet) {   # Go through each profile set to investigate
+	if ($cpuCount < $cpu) {
+	  $cpuCount++;
+	  $pid = fork();   # Fork off a copy of this process for this set
+	} else {
+	  $deceasedPID = wait();   # Wait until a PID is finished, and gather its number
+	  $pid = fork();   # Fork off a copy of this process for this set
+	}
+	if ($pid != 0) {   # If this is the parent process
+	  push(@pids,$pid);   # Add the new process ID to the list of active process IDs
+	} else {   # If this is the new child process
+	  $hmmPath = $profileDB . "/" . $set . ".hmm";   # Set the path to the HMM-file of the current set
+	  if ($search_eval ne "") {   # If E-value cutoff is use for the search
+	    hmmerSearch("hmmscan --cpu $hmmcpu $heurMax -E $search_eval $hmmPath $tempDir/complement.fasta","$tempDir/complement.$set.hmmscan","C",$set);   # Call HMMER with E-value cutoff
+	  } else {   # If score cutoff is use for the search
+	    hmmerSearch("hmmscan --cpu $hmmcpu $heurMax -T $search_score $hmmPath $tempDir/complement.fasta","$tempDir/complement.$set.hmmscan","C",$set);   # Call HMMER with score cutoff
+	  }
+	  ## Stop child process...
+	  exit;   # Exits the child process
+	}
+      }
+    }
+    ## Get the current time and output the active process IDs
+    $now = localtime;
+    #print STDERR "    $now : Active PIDs: ";
+    #foreach $p (@pids) {   # Go through the list of PIDs
+    #  print STDERR "$p ";   # Print the PID
+    #}
+    #print STDERR "\n";   # Print a new line
+    do {   # Loop until all child PIDs have finished.
+      $deceasedPID = wait();   # Wait until a PID is finished, and gather its number
+      $now = localtime;   # Get the current time
+      if ($deceasedPID > -1) {   # If the PID that finished wasn't the last active one
+#	print STDERR "    $now : PID $deceasedPID finished.\n";   # Print finished PID
+      } else {   # If PID that finished was the last
+	print STDERR "    $now : All processes finished.\n";   # Print that all PIDs have finished
+      }
+    } until (wait() == -1);   # Do this loop until all PIDs have finished
+    $now = localtime;   # Get current time
+    print STDERR "$now : Parallel HMM-scan finished.\n";   # Print informative finishing message
+  }
+} else {    # If a pre-computed hmmscan file is supplied then
+## Get the current time and output that the hmmscan step is skipped
+  $now = localtime;
+  if ($silent == 0) {
+    print STDERR "$now : Skipping hmmscan! Using $hmmscan as input for the analysis instead.\n";
+  }
+}
+
+## Analyse HMM-scan output
+## Get the current time and output info
+$now = localtime;
+if ($silent == 0) {
+  print STDERR "$now : Analysing results of HMM-scan (this might take quite some time)...\n";
+}
+
+## Set up output files
+if ($out_table == 1) {   # If table output is on
+  open (TABLE, ">$output.hmmer.table");   # Create a table output file
+}
+if ($out_graph == 1) {   # If graphical output is on
+  open (GRAPH, ">$output.graph");   # Create a graph output file
+}
+if ($out_not == 1) {   # If not-found output is on
+  open (NOTFOUND, ">$tempDir/$output\_hmmer_no_detections.txt");   # Create a HMMER not-found output file
+}
+
+$setI = 0;   # Set the profile set indicator to zero
+foreach $set (@profileSet) {   # Go through all the profile sets to be investigated
+  for ($co = 0; $co <= 1; $co++) {   # Do main (and complementary) strand analysis in order
+    if ($co > 0) {   # If main strand analysis is finished
+      if ($complement == 1) {   # If complementary strand should be analysed
+	open (HMMOUTPUT, "$tempDir/complement.$set.hmmscan");   # Open hmmscan output for reading
+	open (SEQUENCES, "$tempDir/complement.fasta");   # Open complementary sequence file for reading
+	if ($out_table == 1) {   # If table output is on, write a header for this set
+	  print TABLE "***********************************************************\n";
+	  print TABLE "$set matches on complementary strand:\n";
+	}
+	if ($out_graph == 1) {   # If graphical output is on, write a header for this set
+	  print GRAPH "***********************************************************\n";
+	  print GRAPH "$set matches on complementary strand:\n";
+	}
+      } else {   # If complementary strand should not be analysed
+	last;   # Exit this loop
+      }
+    }
+    if ($co == 0) {   # If main strand analysis is not finished
+      open (HMMOUTPUT, "$tempDir/main.$set.hmmscan");   # Open hmmscan output for reading
+      open (SEQUENCES, "$tempDir/main.fasta");   # Open main sequence file for reading
+      if ($out_table == 1) {   # If table output is on, write a header for this set
+	print TABLE "***********************************************************\n";
+	print TABLE "$set matches on main strand:\n";
+      }
+      if ($out_graph == 1) {   # If graphical output is on, write a header for this set
+	print GRAPH "***********************************************************\n";
+	print GRAPH "$set matches on main strand:\n";
+      }
+    }
+  ## Read and analyse hmmscan output file
+  while ($line = <HMMOUTPUT>) {   # Read in the hmmscan output file, line by line
+    chomp($line);   # Remove any potential line feeds
+    if (substr($line,0,13) eq "## New query:") {   # If this line begin with "## New query:", then this is a new entry
+      undef %hits;   # Empty the hits hash
+      undef %evals;   # Empty the e-value hash
+      undef %scores;   # Empty the score hash
+      $querytemp = substr($line,14);   # Extract everything from this line, except for the start ("## New query:")
+      ($query,$length) = split('\t',$querytemp);  # Split query name, length and DNA sequence
+      if ($co == 0) {   # If main strand analysis
+	$DNA = $sequenceDB{"$query"};
+      } else {  # If complementary strand
+	$cseq = $sequenceDB{"$query"};   # Store the DNA sequence in the intermediate varaible $cseq
+	$cseq =~ tr/[a-z]/[A-Z]/;   # Make all letters uppercase
+	$cseq =~ s/[^A-Z]//g;  # Remove all non-alphabetic characters
+	$cseq =~ tr/ACGTURYSWKMBDHVN/TGCAAYRWSMKVHDBN/;   # Replace all characters with its complementary base
+	$DNA = reverse($cseq);
+      }
+    } else {
+      
+      if ($line ne "//") {
+	## Find domain annotations...
+	($query,$matchProfile,$length,$domNo,$sign,$score,$bias,$cE,$iE,$hmmFrom,$hmmTo,$hmmends,$queryFrom,$queryTo,$queryends,$envFrom,$envTo,$envends,$acc) = split('\t',$line);   # Split the line into a collection of stat variables
+
+	$useQueryFrom = $queryFrom;
+	if ($hmmFrom > 1) {  # If the HMM-profile is not matched from the beginning
+	  $hmmDiff = $hmmFrom - 1;
+	  if ($useQueryFrom > $hmmDiff) {
+	    $useQueryFrom = $queryFrom - $hmmDiff;
+	  } else {
+	    $useQueryFrom = 1;
+	  }
+	}
+
+	if (uc($anchor) eq "HMM") {
+	  $anchorLen = $hmmTo - $hmmFrom + 1;
+	} else {
+	  $anchorLen = $anchor;
+	}
+	  
+
+	$query_profile_match = $query . ":" . $matchProfile;
+	$profileExists = 0;   # Assume that the newly found match profile ($matchProfile) is not already found for this sequence
+	if (exists($hits{$query_profile_match})) {   # If a profile from the list is the same as the match profile
+	  ($hitFrom,$hitTo,$hitProfile,$hitScore,$hitE) = split('\t',$hits{$query_profile_match});   # Split the entry in list into stat variables
+	  if ($iE < $hitE) {   # If the new match profile has a smaller E-value than the one from the list
+	    $hits{$query_profile_match} = "$useQueryFrom\t$envTo\t$matchProfile\t$score\t$iE\t$anchorLen";   # Replace the data in the hit list with the data for the newly found match profile
+	    $evals{$query_profile_match} = $iE;   # Replace the E-value in the hit list with the E-value for the newly found match profile
+	    $scores{$query_profile_match} = $score;   # Replace the score in the hit list with the score for the newly found match profile
+	  }
+	  $profileExists = 1;   # Indicate that this match profile was found in the hit list
+	}
+	if ($profileExists == 0) {   # If the match profile was not found in the hit list
+	  if (($iE <= $E) && ($score >= $S)) {  # If this hits lives up to the minimal score and E-value cutoffs
+	    $hits{$query_profile_match} = "$useQueryFrom\t$envTo\t$matchProfile\t$score\t$iE\t$anchorLen";   # Add the data for the newly found match profile
+	    $evals{$query_profile_match} = $iE;   # Add the E-value for the newly found match profile
+	    $scores{$query_profile_match} = $score;   # Add the score for the newly found match profile
+	  }
+	}
+      } else {   # If the line only contains "//", the end of this sequence's hmmscan entry is reached
+      ## Save analysis results
+	@sortedKeys = sort {$hits{$a} <=> $hits{$b}} keys(%hits);   # Sort the the list of hits numerically ascending (smallest first)
+	undef @sortedHits;
+	undef @scores;
+	undef @evals;
+	foreach $key (@sortedKeys) {
+	  push(@sortedHits, $hits{$key});   # Add the hit to the list of hits numerically ascending (smallest first)
+	  push(@scores, $scores{$key});  # Add the score to the scores array
+	  push(@evals, $evals{$key});  # Add the E-value to the evals array
+	}
+
+	## If the number of hits > N, the min eval < E and the max score > S then include query sequence
+	## OR if a single domain satisfies the thresholds and this is allowed, include it!
+	if ( ((scalar(@sortedHits) >= $N) && (min(@evals) <= $E) && (max(@scores) >= $S)) ||
+	     ((scalar(@sortedHits) > 0) && ($allow_single_E >= 0) && (min(@evals) <= $allow_single_E) && (max(@scores) >= $allow_single_score)) ) {
+	  if ($debug == 1) {   # If debugging mode is on
+	    print STDERR $query . " :\t" . scalar(@sortedHits) . "\t" . min(@evals) . "\t" . max(@scores) . "\n";   # Print some top hit statistics
+	  }
+	  
+	  ## Save some total stats to be able to determine origin of ITS sequence
+	  if (scalar(@evals) > 0) {   # If there are any E-values stored
+	    $averageE = sum(@evals) / scalar(@evals);   # Calculate the average E-value for this profile set
+	    $averageScore = sum(@scores) / scalar(@scores);   # Calculate the average score for this profile set
+	    $numberOfDomains = scalar(@sortedHits);   # Calculate the number of domains matched on this sequence
+	    
+	    #$scoreSum = sum(@scores) / @modelCount[$setI];   # Calculate score sum as: sum / (no. of profiles of this given type)
+	    $scoreSum = sum(@scores) / 4;   # Calculate score sum as: sum / (no. of profiles of this given type)
+	    
+	    $saveThis = "$query\t$set\t$co\t$numberOfDomains\t$averageE\t$averageScore\t$scoreSum\t$DNA\t";   # Collect the variables to save for this sequence and this profile set
+	    foreach $hit (@sortedHits) {   # Go through the list of hits and add specific information to save from each hit
+	      ($hitFrom,$hitTo,$hitProfile,$hitScore,$hitE,$hitanchorlen) = split('\t',$hit);   # Extract information from this hit
+	      $saveThis = $saveThis . "$hitFrom;$hitTo;$hitProfile;$hitScore;$hitE;$hitanchorlen\t";   # Add information to the list of variables to save
+	    }
+	    #push(@allHits, $saveThis);   # Add this information to the collection of all hits for this sequence, across all profile sets
+	    if (exists($allHits{$query})) {
+	      $allHits{$query} = $allHits{$query} . "\n" . $saveThis;
+	    } else {
+	      $allHits{$query} = $saveThis;
+	    }
+	  }
+	  
+	  if ($out_table == 1) {   # If table output is on
+	    print TABLE $query . "\t" . $length . "\t";   # Print query and length information to table
+	    foreach $hit (@sortedHits) {   # Go through each hit in the hit list
+	      ($hitFrom,$hitTo,$hitProfile,$hitScore,$hitE,$hitanchorlen) = split('\t',$hit);   # Extract data corresponding to this hit
+	      print TABLE "$hitFrom - $hitTo: $hitProfile ($hitScore, $hitE)\t";   # Print hit information to table
+	    }
+	    print TABLE "\n";   # Print new line
+	  }
+	  
+	  if ($out_graph == 1) {   # If graphical output is on
+	    print GRAPH ">> " . $query . "\t" . $length . " bp\n";   # Print a sequence header
+	    $insertPoint = 0;   # Set the domain insert point to beginning of line
+	    $hi = 0;   # Set hit number to zero
+	    foreach $hit (@sortedHits) {   # Go through the hit list
+	      ($hitFrom,$hitTo,$hitProfile,$hitScore,$hitE,$anchorLen) = split('\t',$hit);   # Split the hit into stat variables
+	      if ($graph_scale == 0) {   # If the graph scale is scaled individually to 100% for each sequence
+		$pFrom = $hitFrom / $length * 100;   # Set the profile start on graph relative to its position in the sequence
+		$pTo = $hitTo / $length * 100;   # Set the profile end on graph relative to its position in the sequence
+		$pEnd = 100;   # Set the end of the sequence graph to be at 100
+	      } else {   # If the scale is the same for all sequences
+		$pFrom = $hitFrom * $graph_scale;   # Set the profile start on graph scaled to the parameter given
+		$pTo = $hitTo * $graph_scale;   # Set the profile end on graph scaled to the parameter given
+		$pEnd = $length * $graph_scale;   # Set the end of the sequence graph to be at the end of the sequence scaled to the parameter given
+	      }
+	      for ($insertPoint = $insertPoint; $insertPoint <= $pFrom; $insertPoint++) {   # Go forward through the sequence, moving the insert point one step at a time until the beginning of the next profile is reached
+		print GRAPH "-";   # Print a "-"
+	      }
+	      print GRAPH substr($hitProfile,2,3);   # When the profile is reached, print its name
+	      $insertPoint = $insertPoint + 3;   # Move the insert point three steps forward, to account for the inserted name
+	      ($nextHitStart,$nextHitEnd,$nextProfile) = split('\t',@sortedHits[$hi + 1]);   # Check where the next hit in the list is located
+	      if (($nextHitStart <= $hitTo) && ($nextHitStart > 0)) {   # If the next hit in the list overlaps with this profile
+		if ($graph_scale == 0) {   # If the scale is relative
+		  $pTo = $nextHitStart / $length * 100 - 1;   # Change the profile end on the graph to be where this next profile starts
+		} else {   # If the scale is the same for all sequences
+		  $pTo = $nextHitStart * $graph_scale - 1;   # Change the profile end on the graph to be where this next profile starts
+		}
+	      }
+	      for ($insertPoint = $insertPoint; $insertPoint <= $pTo; $insertPoint++) {   # Go forward through the sequence, moving the insert point one step at a time until the end of the current profile is reached
+		print GRAPH "=";   # Print a "="
+	      }
+	      if (($nextHitStart <= $hitTo) && ($nextHitStart > 0)) {   # If the next hit in the list overlaps with this profile
+		print GRAPH ">";   # Print a ">" to indicate the profile overlap
+		$insertPoint++;   # Move the insert point one additional step forward to account for the ">" inserted
+	      }
+	      $hi++;   # Increase the hit number by one
+	    }
+	    for ($insertPoint = $insertPoint; $insertPoint <= $pEnd; $insertPoint++) {   # If there is no more profile matches to sequence, go forward through the sequence, moving the insert point one step at a time until the end of the sequence is reached
+	      print GRAPH "-";   # Print a "-"
+	    }
+	    print GRAPH "\n";   # Print a new line, indicating the end of this sequence entry
+	  }
+	} else {   # If this sequence didn't find any good-enough profile matches
+	  if ($out_not == 1) {   # If not-found output is on
+	    print NOTFOUND $query . "\n";   # Print the name of this query to the not-found list
+	  }
+	}
+      }
+    }
+  }
+  close (SEQUENCES);   # Close the input sequence file
+  close (HMMOUTPUT);   # Close the hmmscan output file
+  }
+  $setI++;   # Add one to the profile set indicator
+}
+
+## Close output files
+if ($out_table == 1) {   # If table output is on, close the table file
+  close (TABLE);
+}
+if ($out_graph == 1) {   # If graphical output is on, close the graph file
+  close (GRAPH);
+}
+if ($out_not == 1) {   # If not-found output is on, close the not-found file
+  close (NOTFOUND);
+  #$profileCount = scalar(@profileSet);   # Count the number of profile sets
+  #if ($complement == 1) {   # If complementary strand was scanned
+  #  $profileCount = $profileCount * 2;   # Double the number of profile sets that was investigated (and thus the number of not-founds that could at max be found)
+  #}
+  #`sort $tempDir/hmmer_no_detections.txt | uniq -c | grep "  *$profileCount " | sed "s/  *$profileCount //" > $output\_no_detections.txt`;   # Sort the not-found list, count the number of profile sets having no matches for each query. Save those that have only non-matches to the hmmer-not-found file
+}
+
+
+## Create total collected output and FASTA output
+
+if ($out_results == 1) {
+  open (RESULTS, ">$output.extraction.results");   # Create a results file
+}
+open (RAWOUT, ">$tempDir/ITSx_output.raw");   # Create a raw output file for ALL data
+open (PROBLEM, ">$output.problematic.txt");   # Create a file for problematic entries
+$foundProblem = 0;
+if ($out_pos == 1) {
+  open (POS, ">$output.positions.txt");   # Create a positions file
+}
+if ($out_fasta == 1) {   # If FASTA output should be written
+  open (FASTA, ">$output.full.fasta");   # Create a FASTA output file for found sequences
+  if ($allow_reorder == 0) {   # If reordering of domains is not allowed
+    open (CHIMERA, ">$output.chimeric.fasta");   # Create a FASTA file for potential chimera sequences with profile matches in the wrong order
+    $foundChimera = 0;
+  }
+  if ($out_partial > 0) {
+    open (FULLPARTIAL, ">$output.full_and_partial.fasta");
+  }
+}
+
+if ($out_joined == 1) {   # If SSU FASTA output should be written
+  open (JOINED, ">$output.joined.fasta");
+}
+if ($out_ssu == 1) {   # If SSU FASTA output should be written
+  open (SSU, ">$output.SSU.fasta");
+}
+if ($out_lsu == 1) {   # If LSU FASTA output should be written
+  open (LSU, ">$output.LSU.fasta");
+}
+if ($out_58S == 1) {   # If 5.8S FASTA output should be written
+  open (MID, ">$output.5_8S.fasta");
+}
+if ($out_its1 == 1) {   # If ITS1 FASTA output should be written
+  open (ITS1, ">$output.ITS1.fasta");
+  if ($out_partial > 0) {
+    open (ITS1PARTIAL, ">$output.ITS1.full_and_partial.fasta");
+  }
+}
+if ($out_its2 == 1) {   # If ITS2 FASTA output should be written
+  open (ITS2, ">$output.ITS2.fasta");
+  if ($out_partial > 0) {
+    open (ITS2PARTIAL, ">$output.ITS2.full_and_partial.fasta");
+  }
+}
+if ($out_concat == 1) {  # If concatenated output should be written
+  open (CONCAT, ">$output.concat.fasta");
+}
+
+undef @sortedHits;   # Empty the array of sorted hits
+
+# @sortedHits = sort @allHits;   # Sort the full list of hits in alphabetical order (to be able to analyse all sequences with same ID at once)
+if ($out_not == 1) {   # If not-found output is on
+  open (NOTFOUND, ">$output\_no_detections.txt");   # Create a not-found output file
+  $noDetect = 0;
+}
+foreach $sequenceID (@sequenceOrder) {   # Sort the full list of hits in their original order (to be able to analyse all sequences with same ID at once)
+  if ($sequenceID ne "") {
+    $countsInList = 0;
+    if (exists($allHits{$sequenceID})) {
+      @allHits = split('\n',$allHits{$sequenceID});
+    } else {
+      undef @allHits;
+    }
+    foreach $line (@allHits) {
+      @item = split('\t',$line);   # Split the line into an array
+      if (@item[0] eq $sequenceID) {  # If this item corresponds to the current sequence ID
+	push(@sortedHits,$line);  # Add it to the sorted list of hits
+	$countsInList++;
+      }
+    }
+    if ($countsInList == 0) {  # If no matches were found
+      if ($out_not == 1) {   # If not-found output is on
+	print NOTFOUND "$sequenceID\n";  # Output the sequence ID
+	$noDetect++;
+      }
+    }
+  }
+}
+if ($out_not == 1) {   # If not-found output is on
+  close (NOTFOUND);
+  if ($noDetect == 0) {
+    `rm $output\_no_detections.txt 2> /dev/null`;
+  }
+}
+
+## Set all counts for different ITS types to zero
+undef @itsCounts;
+$itsChimeric = 0;
+$itsMain = 0;
+$itsCompl = 0;
+
+push(@sortedHits,"--END--");   # Add a last item to the sorted list, so that all items are securely saved
+$lc = 1;   # Set the line count to one
+foreach $line (@sortedHits) {   # Go through the list of found hits
+  print RAWOUT "$line\n";   # Write the raw data associated with this hit to the raw data output file
+  @item = split('\t',$line);   # Split the line into an array
+  ## If this sequence ID is the same as the saved ones, then add it, else empty the array sequence ID and save
+  if ((@seqID[0] ne @item[0]) && (@item[0] ne "") || ($lc > scalar(@sortedHits))) {   # If this sequence ID is not the same as the last one and is non-empty, or if the end of the list has been reached
+    ## Save profile-type which is most likely...
+    if ($priority eq "sum") {   # If the sum-of-scores algorithm should be used to determine the most likely profile-type
+      ## Reset variables to unrealisticly high or low values
+      $best = 0;
+      $bestCount = 0;
+      $bestEval = 1000;
+      $bestScore = -1000;
+      $bestSum = -1000;
+      
+      for ($i = 0; $i < scalar(@seqScoreSum); $i++) {   # Go through all sum-of-scores entries
+	if (@seqScoreSum[$i] > $bestSum) {   # If the current value is larger than the previous top value
+	  $best = $i;   # Set the best value to be the current value
+	  ## Set all other best variables to those corresponding to the current value
+	  $bestCount = @seqDomCounts[$i];
+	  $bestEval = @seqAvgE[$i];
+	  $bestScore = @seqAvgScore[$i];
+	  $bestSum = @seqScoreSum[$i];
+	}
+	if (@seqScoreSum[$i] == $bestSum) {   # If the current value is equal to the previous top value
+	  if (@seqDomCounts[$i] > $bestCount) {   # If the current domain count is larger than the previous top domain count
+	    $best = $i;   # Set the best value to be the current value
+	    ## Set all other best variables to those corresponding to the current value
+	    $bestCount = @seqDomCounts[$i];
+	    $bestEval = @seqAvgE[$i];
+	    $bestScore = @seqAvgScore[$i];
+	    $bestSum = @seqScoreSum[$i];
+	  }
+	  if (@seqDomCounts[$i] == $bestCount) {   # If the current domain count is equal to the previous top domain count
+	    if (@seqAvgE[$i] < $bestEval) {   # If the current E-value is smaller than the previous top E-value
+	      $best = $i;   # Set the best value to be the current value
+	      ## Set all other best variables to those corresponding to the current value
+	      $bestCount = @seqDomCounts[$i];
+	      $bestEval = @seqAvgE[$i];
+	      $bestScore = @seqAvgScore[$i];
+	      $bestSum = @seqScoreSum[$i];
+	    }
+	  }
+	}
+      }
+    }
+    if ($priority eq "domains") {   # If the number of found domains should be used to determine the most likely profile-type
+      ## Reset variables to unrealisticly high or low values
+      $best = 0;
+      $bestCount = 0;
+      $bestEval = 1000;
+      $bestScore = -1000;
+
+      for ($i = 0; $i < scalar(@seqDomCounts); $i++) {   # Go through all domain count entries
+	if (@seqDomCounts[$i] > $bestCount) {   # If the current domain count is larger than the previous top domain count
+	  $best = $i;   # Set the best value to be the current value
+	  ## Set all other best variables to those corresponding to the current value
+	  $bestCount = @seqDomCounts[$i];
+	  $bestEval = @seqAvgE[$i];
+	  $bestScore = @seqAvgScore[$i];
+	}
+	if (@seqDomCounts[$i] == $bestCount) {   # If the current domain count is equal to the previous top domain count
+	  if (@seqAvgE[$i] < $bestEval) {   # If the current E-value is smaller than the previous top E-value
+	    $best = $i;   # Set the best value to be the current value
+	    ## Set all other best variables to those corresponding to the current value
+	    $bestCount = @seqDomCounts[$i];
+	    $bestEval = @seqAvgE[$i];
+	    $bestScore = @seqAvgScore[$i];
+	  }
+	  if (@seqAvgE[$i] == $bestEval) {   # If the current E-value is equal to the previous top E-value
+	    if (@seqAvgScore[$i] > $bestScore) {   # If the current average score is larger than the previous top average score
+	      $best = $i;   # Set the best value to be the current value
+	      ## Set all other best variables to those corresponding to the current value
+	      $bestCount = @seqDomCounts[$i];
+	      $bestEval = @seqAvgE[$i];
+	      $bestScore = @seqAvgScore[$i];
+	    }
+	  }
+	}
+      }
+    }
+    if ($priority eq "eval") {   # If the average E-value should be used to determine the most likely profile-type
+      ## Reset variables to unrealisticly high or low values
+      $best = 0;
+      $bestCount = 0;
+      $bestEval = 1000;
+      $bestScore = -1000;
+
+      for ($i = 0; $i < scalar(@seqDomCounts); $i++) {   # Go through all domain counts entries
+	if (@seqAvgE[$i] < $bestEval) {   # If the current E-value is smaller than the previous top E-value
+	  $best = $i;   # Set the best value to be the current value
+	  ## Set all other best variables to those corresponding to the current value
+	  $bestCount = @seqDomCounts[$i];
+	  $bestEval = @seqAvgE[$i];
+	  $bestScore = @seqAvgScore[$i];
+	}
+	if (@seqAvgE[$i] == $bestEval) {   # If the current E-value is equal to the previous top E-value
+	  if (@seqAvgScore[$i] > $bestScore) {   # If the current average score is larger than the previous top average score
+	    $best = $i;   # Set the best value to be the current value
+	    ## Set all other best variables to those corresponding to the current value
+	    $bestCount = @seqDomCounts[$i];
+	    $bestEval = @seqAvgE[$i];
+	    $bestScore = @seqAvgScore[$i];
+	  }
+	  if (@seqAvgScore[$i] == $bestScore) {   # If the current average score is equal to the previous top average score
+	    if (@seqDomCounts[$i] > $bestCount) {   # If the current number of domains is larger than the previous top number of domains
+	      $best = $i;   # Set the best value to be the current value
+	      ## Set all other best variables to those corresponding to the current value
+	      $bestCount = @seqDomCounts[$i];
+	      $bestEval = @seqAvgE[$i];
+	      $bestScore = @seqAvgScore[$i];
+	    }
+	  }
+	}
+      }
+    }
+    if ($priority eq "score") {   # If the average score should be used to determine the most likely profile-type
+      ## Reset variables to unrealisticly high or low values
+      $best = 0;
+      $bestCount = 0;
+      $bestEval = 1000;
+      $bestScore = -1000;
+
+      for ($i = 0; $i < scalar(@seqDomCounts); $i++) {   # Go through all domain counts entries
+	if (@seqAvgScore[$i] > $bestScore) {   # If the current average score is larger than the previous top average score
+	  $best = $i;   # Set the best value to be the current value
+	  ## Set all other best variables to those corresponding to the current value
+	  $bestCount = @seqDomCounts[$i];
+	  $bestEval = @seqAvgE[$i];
+	  $bestScore = @seqAvgScore[$i];
+	}
+	if (@seqAvgScore[$i] == $bestScore) {   # If the current average score is equal to the previous top average score
+	  if (@seqAvgE[$i] < $bestEval) {   # If the current E-value is smaller than the previous top E-value
+	    $best = $i;   # Set the best value to be the current value
+	    ## Set all other best variables to those corresponding to the current value
+	    $bestCount = @seqDomCounts[$i];
+	    $bestEval = @seqAvgE[$i];
+	    $bestScore = @seqAvgScore[$i];
+	  }
+	  if (@seqAvgE[$i] == $bestEval) {   # If the current E-value is equal to the previous top E-value
+	    if (@seqDomCounts[$i] > $bestCount) {   # If the current number of domains is larger than the previous top number of domains
+	      $best = $i;   # Set the best value to be the current value
+	      ## Set all other best variables to those corresponding to the current value
+	      $bestCount = @seqDomCounts[$i];
+	      $bestEval = @seqAvgE[$i];
+	      $bestScore = @seqAvgScore[$i];
+	    }
+	  }
+	}
+      }
+    }
+    
+    if (@seqID[$best] ne "") {   # If the sequence ID of the most likely profile is not empty
+
+      $allanchorLens = @anchorLens[$best];  # Get the best anchor lengths
+      @allanchorLens = split(',', $allanchorLens);  # Split the anchor lens into an array
+
+      $chimeric = 0;   # Assume the sequence is not chimeric
+      if ($allow_reorder == 0) {   # If re-order of domain is not allowed
+	$domain_order = @allSeqDomains[$best];   # Gather the order the domains are found in
+	@domain_order = split(' ',$domain_order);   # Split the list into an array
+	@sorted_domain_order = sort {$a cmp $b} @domain_order;   # Sort the array alphabetically
+	for ($di = 0; $di <= scalar(@domain_order); $di++) {   # Go through the sorted array
+	  if ((@domain_order[$di] ne @sorted_domain_order[$di]) || (@problemCode[$best] =~ m/C/)) {    # Check if the order of the arrays differ at any poiny
+	    $chimeric = 1;   # If they do differ, mark the sequence as chimeric
+	  }
+	}
+      }
+
+      $seqDNALength = length(@seqDNA[$best]);   # Get the length of the DNA sequence
+
+      ## Print sequence and match data...
+      ## Order of columns in the output file:
+      ## ID Length Type Main/Compl Domains Avg.Eval Avg.Score Start End Start_domain End_domain Chimeric
+      if ($out_results == 1) {
+	print RESULTS @seqID[$best] . "\t" . $seqDNALength . "\t" . @seqITSType[$best] . "\t" . @seqCompl[$best] . "\t" . @seqDomCounts[$best] . "\t" . @seqAvgE[$best] . "\t" . @seqAvgScore[$best] . "\t" . @seqScoreSum[$best] . "\t" . @dnaStart[$best] . "\t" . @dnaEnd[$best] . "\t" . @startDomain[$best] . "\t" . @endDomain[$best] . "\t";   # Print sequence and match data to the results file
+	if ($chimeric == 1) {   # If the sequence was regarded chimeric
+	  print RESULTS "Chimeric\t";   # Add a chimeric tag to the entry
+	} else {   # If not chimeric
+	  print RESULTS "\t";   # Add an empty column
+	}
+	$allDomains = @allSeqDomains[$best];   # Get the domain order of the entry
+	$allDomains =~ tr/ /,/;   # Replace spaces with commas in the domain order string
+	$allDomains = substr($allDomains,0,length($allDomains) - 1);   # Remove the last character (a comma)
+	print RESULTS $allDomains;   # Write the domain order to the results file
+	print RESULTS "\t";   # Write a tab to the results file
+      }
+
+      if ($out_pos == 1) {
+	$out_all_pos = 1;
+	if ($out_all_pos == 1) {  # Output positions of all domains
+	  $seqPartLen = @dnaEnd[$best] - @dnaStart[$best] + 1;
+	  if ($seqPartLen < 0) {
+	    $seqPartLen = $seqPartLen * -1;
+	  }
+	  ## Print the positions of all identified domains to the position file
+	  print POS @seqID[$best] . "\t" . $seqDNALength . " bp." . "\t";
+	  if (@problemCode[$best] !~ m/S/) {
+	    print POS "SSU: " . @ssuStart[$best] . "-" . @ssuEnd[$best] . "\t";
+	  } else {
+	    print POS "SSU: Not found\t";
+	  }
+	  if ((@problemCode[$best] =~ m/X/) || ((@problemCode[$best] =~ m/[15]/) && (@problemCode[$best] =~ m/S/))) {
+	    print POS "ITS1: Not found\t";
+	  } else {
+	    if (@problemCode[$best] =~ m/O/) {
+	      print POS "ITS1: " . (@ssuEnd[$best] + 1) . "-" . (@ssuEnd[$best] + 1) . "\t";
+	    } else {
+	      print POS "ITS1: " . @its1Start[$best] . "-" . @its1End[$best] . "\t";
+	    }
+	  }
+	  if (@problemCode[$best] !~ m/[125OP]/) {
+	    print POS "5.8S: " . @midStart[$best] . "-" . @midEnd[$best] . "\t";
+	  } else {
+	    if (@problemCode[$best] =~ m/5/) {
+	      print POS "5.8S: Not found\t";
+	    } else {
+	      if (@problemCode[$best] =~ m/1/) {
+		print POS "5.8S: No start\t";
+	      } else {
+		if (@problemCode[$best] =~ m/O/) {
+		  print POS "5.8S: Overlap SSU\t";
+		} else {
+		  if (@problemCode[$best] =~ m/P/) {
+		    print POS "5.8S: Overlap LSU\t";
+		  } else {
+		    print POS "5.8S: No end\t";
+		  }
+		}
+	      }
+	    }
+	  }
+	  if ((@problemCode[$best] =~ m/Y/) ||((@problemCode[$best] =~ m/[25]/) && (@problemCode[$best] =~ m/L/))) {
+	    print POS "ITS2: Not found\t";
+	  } else {
+	    if (@problemCode[$best] =~ m/O/) {
+	      print POS "ITS2: " . (@lsuStart[$best] - 1) . "-" . (@lsuStart[$best] - 1) . "\t";
+	    } else {
+	      print POS "ITS2: " . @its2Start[$best] . "-" . @its2End[$best] . "\t";
+	    }
+	  }
+	  if (@problemCode[$best] !~ m/L/) {
+	    print POS "LSU: " . @lsuStart[$best] . "-" . @lsuEnd[$best] . "\t";
+	  } else {
+	    print POS "LSU: Not found" . "\t";
+	  }
+
+	  if (@problemCode[$best] =~ m/5/) {
+	    print POS "Broken or partial sequence, no 5.8S! ";
+	  } else {
+	    if (@problemCode[$best] =~ m/[12]/) {
+	      print POS "Broken or partial sequence, only partial 5.8S! ";
+	    }
+	  }
+	  if (@problemCode[$best] =~ m/B/) {
+	    print POS "ITS region too long! ";
+	  }
+	  if (@problemCode[$best] =~ m/O/) {
+	    print POS "5.8S seem to overlap with SSU! ";
+	  }
+	  if (@problemCode[$best] =~ m/P/) {
+	    print POS "5.8S seem to overlap with LSU! ";
+	  }
+	  if (@problemCode[$best] =~ m/C/) {
+	    print POS "Chimeric! ";
+	  }
+	  print POS "\n";
+
+	} else {  # Output only ITS positions
+	  $seqPartLen = @dnaEnd[$best] - @dnaStart[$best] + 1;
+	  print POS @seqID[$best] . "\t" . $seqDNALength . " bp." . "\t" . "ITS1: " . @its1Start[$best] . "-" . @its1End[$best] . "\t" . "ITS2: " . @its2Start[$best] . "-" . @its2End[$best] . "\n";  # Print the positions of the ITS sequences to the position file
+	}
+      }
+
+      if (@problem[$best] ne "") {
+	$foundProblem++;
+	print PROBLEM @seqID[$best] . "\t" . @problem[$best] . "\n";
+      }
+      
+      ## Set extended type string (the string going into the definition line of the FASTA file)
+      $extendedType = $profileIndex{@seqITSType[$best]} . " ITS sequence";
+      @itsCounts[ord(@seqITSType[$best])]++;   # Add one ITS to the appropriate counter
+
+      if (@seqCompl[$best] == 1) {   # If domains were found on complementary strand
+	$extendedStrand = "complementary strand";   # Set the strand string to complementary
+	$itsCompl++;   # Add one to the complementary strand counter
+      } else {   # If domains were found on the main strand
+	$extendedStrand = "main strand";   # Set the strand string to main
+	$itsMain++;   # Add one to the main strand counter
+      }
+      
+      ## Print (extracted) ITS sequence...
+      if ($out_fasta == 1) {   # If FASTA-output is on
+	if ($truncate == 0) {   # If the whole sequence should be kept in output file
+	  if ($chimeric == 0) {   # If the sequence is not chimeric
+	    if (@problemCode[$best] !~ m/[SL]/) {
+	      if ($out_preserve == 1) {  # If sequence headers should be preserved
+		print FASTA $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	      } else {
+		print FASTA ">" . @seqID[$best] . "|" . @seqITSType[$best] ." " . $extendedType . " (" . $seqDNALength . " bp)  on " . $extendedStrand . "\n";   # Write FASTA definition line
+	      }
+	      print FASTA  @seqDNA[$best] . "\n";   # Write DNA sequence
+	    }
+	    if ($out_partial > 0) {
+	      if (@problemCode[$best] !~ m/[SL125]/) {
+	      if ($out_preserve == 1) {  # If sequence headers should be preserved
+		print FULLPARTIAL $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	      } else {
+		print FULLPARTIAL ">" . @seqID[$best] . "|" . @seqITSType[$best] ." " . $extendedType . " (" . $seqDNALength . " bp) Full ITS region on " . $extendedStrand . "\n";   # Write FASTA defline
+	      }
+		print FULLPARTIAL  @seqDNA[$best] . "\n";   # Write DNA sequence
+	      } else {
+		$its1PartLen = @its1End[$best] - @its1Start[$best] + 1;
+		$its2PartLen = @its2End[$best] - @its2Start[$best] + 1;
+		if (($out_partial < $its1PartLen) && ($out_partial < $its2PartLen)) {
+		  if ($out_preserve == 1) {  # If sequence headers should be preserved
+		    print FULLPARTIAL $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+		  } else {
+		    print FULLPARTIAL ">" . @seqID[$best] . "|" . @seqITSType[$best] ." " . $extendedType . " (" . $seqDNALength . " bp) Partial ITS region on " . $extendedStrand . "\n";   # Write FASTA defline
+		  }
+		  print FULLPARTIAL  @seqDNA[$best] . "\n";   # Write DNA sequence
+		}
+	      }
+	    }
+	  } else {   # If sequence is regarded chimeric
+	    $itsChimeric++;   # Add one to the chimeric counter
+	    if ($out_preserve == 1) {  # If sequence headers should be preserved
+	      print CHIMERA $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	    } else {
+	      print CHIMERA ">" . @seqID[$best] . "|" . @seqITSType[$best] ." Chimeric " . $extendedType . " (" . length(@seqDNA[$best]) . " bp)  on " . $extendedStrand . "\n";   # Write FASTA definition line
+	    }
+	    print CHIMERA  @seqDNA[$best] . "\n";   # Write DNA sequence
+	    $foundChimera++;
+	  }
+	} else {    # If only the ITS part of the sequence should be saved to output file
+	  $fastaStartPoint = @dnaStart[$best] - 1;   # Start extraction at the start of the first domain
+	  $fastaEndPoint = @dnaEnd[$best]+10;   # End extraction 10 bp after the last domain
+
+	  if (@seqDomCounts[$best] > 1) {   # If more than one domain was found
+	    if (substr(@startDomain[$best],0,5) eq "1_SSU")  {   # If the first domain was SSU
+	      $fastaStartPoint = @ssuEnd[$best];   # Set the start point of the extraction to the end of the SSU domain
+	    }
+	    if (substr(@startDomain[$best],0,5) eq "4_LSU")  {   # If the first domain was LSU
+	      $fastaStartPoint = @lsuEnd[$best];   # Set the start point of the extraction to the end of the LSU domain
+	    }
+	    if (substr(@endDomain[$best],0,5) eq "1_SSU")  {   # If the last domain was SSU
+	      $fastaEndPoint = @ssuStart[$best] - 1;   # Set the end point of the extraction to the start of the SSU domain
+	    }
+	    if (substr(@endDomain[$best],0,5) eq "4_LSU")  {   # If the last domain was LSU
+	      $fastaEndPoint = @lsuStart[$best] - 1;   # Set the end point of the extraction to the start of the LSU domain
+	    }
+	  }
+	  
+	  if ($fastaStartPoint < 0) {   # If the start point is smaller than zero, set the start point to zero
+	    $fastaStartPoint = 0;
+	  }
+	  if ($fastaEndPoint > length(@seqDNA[$best])) {   # If the end point is larger than the length of the sequence, set the end point to the sequence end
+	    $fastaEndPoint = length(@seqDNA[$best]);
+	  }
+
+	  $fastaLength = $fastaEndPoint - $fastaStartPoint + 1;
+
+	  if ($chimeric == 0) {   # If the sequence is not chimeric
+	    if (@problemCode[$best] !~ m/[SL]/) {
+	      if ($out_preserve == 1) {  # If sequence headers should be preserved
+		print FASTA $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	      } else {
+		print FASTA ">" . @seqID[$best] . "|" . @seqITSType[$best] . " " . $extendedType . " (" . $fastaLength . " bp) on " . $extendedStrand . "\n";   # Write FASTA definition line
+	      }
+	      if ($anchorLen > 0) {
+		if ($fastaStartPoint - @allanchorLens[0] > 0) {
+		  print FASTA substr(@seqDNA[$best],$fastaStartPoint - @allanchorLens[0],$fastaLength + @allanchorLens[0] + @allanchorLens[3]) . "\n";   # Write DNA sequence
+		} else {
+		  print FASTA substr(@seqDNA[$best],0,$fastaLength + $fastaStartPoint + @allanchorLens[3]) . "\n";   # Write DNA sequence
+		}
+	      } else {
+		print FASTA substr(@seqDNA[$best],$fastaStartPoint,$fastaLength) . "\n";   # Write DNA sequence
+	      }
+	    }
+	    if ($out_partial > 0) {
+	      if (@problemCode[$best] !~ m/[SL125]/) {
+		if ($out_preserve == 1) {  # If sequence headers should be preserved
+		  print FULLPARTIAL $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+		} else {
+		  print FULLPARTIAL ">" . @seqID[$best] . "|" . @seqITSType[$best] ." " . $extendedType . " (" . $seqDNALength . " bp) Full ITS region on " . $extendedStrand . "\n";   # Write FASTA defline
+		}
+		print FULLPARTIAL substr(@seqDNA[$best],$fastaStartPoint,$fastaLength) . "\n";   # Write DNA sequence
+	      } else {
+		$its1PartLen = @its1End[$best] - @its1Start[$best] + 1;
+		$its2PartLen = @its2End[$best] - @its2Start[$best] + 1;
+		if (($out_partial < $its1PartLen) && ($out_partial < $its2PartLen)) {
+		  if ($out_preserve == 1) {  # If sequence headers should be preserved
+		    print FULLPARTIAL $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+		  } else {
+		    print FULLPARTIAL ">" . @seqID[$best] . "|" . @seqITSType[$best] ." " . $extendedType . " (" . $seqDNALength . " bp) Partial ITS region on " . $extendedStrand . "\n";   # Write FASTA defline
+		  }
+		  print FULLPARTIAL substr(@seqDNA[$best],$fastaStartPoint,$fastaLength) . "\n";   # Write DNA sequence
+		}
+	      }
+	    }
+	  } else {   # If sequence is regarded chimeric
+	    $itsChimeric++;   # Add one to the chimeric counter
+	    if ($out_preserve == 1) {  # If sequence headers should be preserved
+	      print CHIMERA $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	    } else {
+	      print CHIMERA ">" . @seqID[$best] . "|" . @seqITSType[$best] . " Chimeric " . $extendedType . " (" . $fastaLength . " bp) on " . $extendedStrand . "\n";   # Write FASTA definition line
+	    }
+	    print CHIMERA @seqDNA[$best] . "\n";   # Write DNA sequence
+	    $foundChimera++;
+	  }
+	}
+      }
+
+      if ($out_joined == 1) {
+	if ($chimeric == 0) {   # If the sequence is not chimeric
+	  if ($out_preserve == 1) {  # If sequence headers should be preserved
+	    print JOINED $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	  } else {
+	    print JOINED ">" . @seqID[$best] . "|" . @seqITSType[$best] . " " . $extendedType . " (" . $fastaLength . " bp) From domain " . @startDomain[$best] . " to " . @endDomain[$best] . " on " . $extendedStrand . " Found domains: ";   # Write FASTA definition line
+	    print JOINED substr(@allSeqDomains[$best],0,length(@allSeqDomains[$best]) - 1) . "\n";   # Write domain order
+	  }
+	  print JOINED substr(@seqDNA[$best],$fastaStartPoint,$fastaLength) . "\n";   # Write DNA sequence
+	} else {   # If sequence is regarded chimeric
+	  if ($out_preserve == 1) {  # If sequence headers should be preserved
+	    print JOINED $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	  } else {
+	    print JOINED ">" . @seqID[$best] . "|" . @seqITSType[$best] . " Chimeric " . $extendedType . " (" . $fastaLength . " bp) From domain " . @startDomain[$best] . " to " . @endDomain[$best] . " on " . $extendedStrand . " Found domains: ";   # Write FASTA definition line
+	    print JOINED substr(@allSeqDomains[$best],0,length(@allSeqDomains[$best]) - 1) . "\n";   # Write domain order
+	  }
+	  print JOINED substr(@seqDNA[$best],$fastaStartPoint,$fastaLength) . "\n";   # Write DNA sequence
+	}
+      }
+
+      ## Write SSU sequence to file
+      if ($out_ssu == 1) {  # If SSU output is on
+	if (@problemCode[$best] !~ m/S/) {
+	  if ($only_full == 0) {
+	    $seqPartLen =  @ssuEnd[$best] - @ssuStart[$best] + 1;
+	    if ($out_preserve == 1) {  # If sequence headers should be preserved
+	      print SSU $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	    } else {
+	      print SSU ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|SSU " . "Extracted SSU sequence (" . $seqPartLen . " bp)\n";   # Write FASTA definition line
+	    }
+	    if (uc($anchor) ne "HMM") {
+	      if (@ssuStart[$best] - 1 - $anchorLen > 0) {
+		print SSU substr(@seqDNA[$best], @ssuStart[$best] - 1 - $anchorLen, $anchorLen);
+	      } else {
+		print SSU substr(@seqDNA[$best], 0, @ssuStart[$best] - 1);
+	      }
+	      print SSU substr(@seqDNA[$best], @ssuStart[$best] - 1, @ssuEnd[$best] - @ssuStart[$best] + 1);
+	      if (@ssuEnd[$best] - @ssuStart[$best] + 1 - $anchorLen > 0) {
+		print SSU substr(@seqDNA[$best], @ssuEnd[$best], $anchorLen);
+	      } else {
+		print SSU substr(@seqDNA[$best], @ssuEnd[$best]);
+	      }
+	    } else {
+	      print SSU substr(@seqDNA[$best], @ssuStart[$best] - 1, @ssuEnd[$best] - @ssuStart[$best] + 1);
+	    }
+	    print SSU "\n";   # Write DNA sequence
+	  }
+	}
+      }
+
+      ## Write LSU sequence to file
+      if ($out_lsu == 1) {  # If LSU output is on
+	if ($only_full == 0) {
+	  if (@problemCode[$best] !~ m/L/) {
+	    $seqPartLen = @lsuEnd[$best] - @lsuStart[$best] + 1;
+	    if ($out_preserve == 1) {  # If sequence headers should be preserved
+	      print LSU $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	    } else {
+	      print LSU ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|LSU " . "Extracted LSU sequence (" . $seqPartLen . " bp)\n";   # Write FASTA definition line
+	    }
+	    if (uc($anchor) ne "HMM") {
+	      if (@lsuStart[$best] - 1 - $anchorLen > 0) {
+		print LSU substr(@seqDNA[$best], @lsuStart[$best] - 1 - $anchorLen, $anchorLen);
+	      } else {
+		print LSU substr(@seqDNA[$best], 0, @lsuStart[$best] - 1);
+	      }
+	      print LSU substr(@seqDNA[$best], @lsuStart[$best] - 1, @lsuEnd[$best] - @lsuStart[$best] + 1);
+	      #if (@lsuEnd[$best] - @lsuStart[$best] + 1 - $anchorLen > 0) {
+	      #  print LSU substr(@seqDNA[$best], @lsuEnd[$best] - @lsuStart[$best] + 1, $anchorLen);
+	      #} else {
+	      #  print LSU substr(@seqDNA[$best], @lsuEnd[$best] - @lsuStart[$best] + 1);
+	      #}
+	    } else {
+	      print LSU substr(@seqDNA[$best], @lsuStart[$best] - 1, @lsuEnd[$best] - @lsuStart[$best] + 1);
+	    }
+	    print LSU "\n";   # Write DNA sequence
+	  }
+	}
+      }
+
+      ## Write 5.8S sequence to file
+      if ($out_58S == 1) {  # If 5.8S output is on
+	if (@problemCode[$best] !~ m/[125]/) {
+	  $seqPartLen = @midEnd[$best] - @midStart[$best] + 1;
+	  if ($out_preserve == 1) {  # If sequence headers should be preserved
+	    print MID $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	  } else {
+	    print MID ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|5.8S " . "Extracted 5.8S sequence (" . $seqPartLen . " bp)\n";   # Write FASTA definition line
+	  }
+	  if (uc($anchor) ne "HMM") {
+	    if (@midStart[$best] - 1 - $anchorLen > 0) {
+	      print MID substr(@seqDNA[$best], @midStart[$best] - 1 - $anchorLen, $anchorLen);
+	    } else {
+	      print MID substr(@seqDNA[$best], 0, @midStart[$best] - 1);
+	    }
+	    print MID substr(@seqDNA[$best], @midStart[$best] - 1, @midEnd[$best] - @midStart[$best] + 1);
+	    if (@midEnd[$best] - @midStart[$best] + 1 - $anchorLen > 0) {
+	      print MID substr(@seqDNA[$best], @midEnd[$best], $anchorLen);
+	    } else {
+	      print MID substr(@seqDNA[$best], @midEnd[$best]);
+	    }
+	  } else {
+	    print MID substr(@seqDNA[$best], @midStart[$best] - 1, @midEnd[$best] - @midStart[$best] + 1);
+	  }
+	  print MID "\n";   # Write DNA sequence
+	}
+      }
+
+      ## Write ITS1 sequence to file
+      if ($out_its1 == 1) {  # If ITS1 output is on
+	$seqPartLen = @its1End[$best] - @its1Start[$best] + 1;
+	if ($seqPartLen > 1) {
+	  if ( (($only_full == 0) && (@problemCode[$best] !~ m/[15]/)) || (($only_full == 1) && (@problemCode[$best] !~ m/[S15]/))) {
+	    if ($out_preserve == 1) {  # If sequence headers should be preserved
+	      print ITS1 $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	    } else {
+	      print ITS1 ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|ITS1 " . "Extracted ITS1 sequence " . @its1Start[$best] . "-" . @its1End[$best] . " (" . $seqPartLen . " bp)\n";   # Write FASTA definition line
+	    }
+	    if (uc($anchor) ne "HMM") {
+	      if (@its1Start[$best] - 1 - $anchorLen > 0) {
+		print ITS1 substr(@seqDNA[$best], @its1Start[$best] - 1 - $anchorLen, $anchorLen);
+	      } else {
+		print ITS1 substr(@seqDNA[$best], 0, @its1Start[$best] - 1);
+	      }
+	      print ITS1 substr(@seqDNA[$best], @its1Start[$best] - 1, @its1End[$best] - @its1Start[$best] + 1);
+	      if (length(@seqDNA[$best]) - @its1End[$best] - $anchorLen > 0) {
+		print ITS1 substr(@seqDNA[$best], @its1End[$best], $anchorLen);
+	      } else {
+		print ITS1 substr(@seqDNA[$best], @its1End[$best]);
+	      }
+	    } else {
+	      if (@its1Start[$best] - 1 - @allanchorLens[0] > 0) {
+		print ITS1 substr(@seqDNA[$best], @its1Start[$best] - 1 - @allanchorLens[0], @allanchorLens[0]);
+	      } else {
+		print ITS1 substr(@seqDNA[$best], 0, @its1Start[$best] - 1);
+	      }
+	      print ITS1 substr(@seqDNA[$best], @its1Start[$best] - 1, @its1End[$best] - @its1Start[$best] + 1);
+	      if (length(@seqDNA[$best]) - @its1End[$best] - @allanchorLens[1] > 0) {
+		print ITS1 substr(@seqDNA[$best], @its1End[$best], @allanchorLens[1]);
+	      } else {
+		print ITS1 substr(@seqDNA[$best], @its1End[$best]);
+	      }
+	      
+	    }
+	    print ITS1 "\n";   # Write DNA sequence
+	  }
+	}
+	if ($out_partial > 0) {
+	  if (@problemCode[$best] !~ m/[S15]/) {
+	    if ($out_preserve == 1) {  # If sequence headers should be preserved
+	      print ITS1PARTIAL $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	    } else {
+	      print ITS1PARTIAL ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|ITS1 " . "Extracted Full ITS1 sequence " . @its1Start[$best] . "-" . @its1End[$best] . " (" . $seqPartLen . " bp)\n";   # Write FASTA definition line
+	    }
+	    if (uc($anchor) ne "HMM") {
+	      if (@its1Start[$best] - 1 - $anchorLen > 0) {
+		print ITS1PARTIAL substr(@seqDNA[$best], @its1Start[$best] - 1 - $anchorLen, $anchorLen);
+	      } else {
+		print ITS1PARTIAL substr(@seqDNA[$best], 0, @its1Start[$best] - 1);
+	      }
+	      print ITS1PARTIAL substr(@seqDNA[$best], @its1Start[$best] - 1, @its1End[$best] - @its1Start[$best] + 1);
+	      if (length(@seqDNA[$best]) - @its1End[$best] - $anchorLen > 0) {
+		print ITS1PARTIAL substr(@seqDNA[$best], @its1End[$best], $anchorLen);
+	      } else {
+		print ITS1PARTIAL substr(@seqDNA[$best], @its1End[$best]);
+	      }
+	    } else {
+	      if (@its1Start[$best] - 1 - @allanchorLens[0] > 0) {
+		print ITS1PARTIAL substr(@seqDNA[$best], @its1Start[$best] - 1 - @allanchorLens[0], @allanchorLens[0]);
+	      } else {
+		print ITS1PARTIAL substr(@seqDNA[$best], 0, @its1Start[$best] - 1);
+	      }
+	      print ITS1PARTIAL substr(@seqDNA[$best], @its1Start[$best] - 1, @its1End[$best] - @its1Start[$best] + 1);
+	      if (length(@seqDNA[$best]) - @its1End[$best] - @allanchorLens[1] > 0) {
+		print ITS1PARTIAL substr(@seqDNA[$best], @its1End[$best], @allanchorLens[1]);
+	      } else {
+		print ITS1PARTIAL substr(@seqDNA[$best], @its1End[$best]);
+	      }
+	      
+	    }
+	    print ITS1PARTIAL "\n";   # Write DNA sequence
+	  } else {
+	    if ($out_partial < $seqPartLen) {
+	      if ($out_preserve == 1) {  # If sequence headers should be preserved
+		print ITS1PARTIAL $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	      } else {
+		print ITS1PARTIAL ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|ITS1 " . "Extracted Partial ITS1 sequence " . @its1Start[$best] . "-" . @its1End[$best] . " (" . $seqPartLen . " bp)\n";   # Write FASTA definition line
+	      }
+	      if (uc($anchor) ne "HMM") {
+		if (@its1Start[$best] - 1 - $anchorLen > 0) {
+		  print ITS1PARTIAL substr(@seqDNA[$best], @its1Start[$best] - 1 - $anchorLen, $anchorLen);
+		} else {
+		  print ITS1PARTIAL substr(@seqDNA[$best], 0, @its1Start[$best] - 1);
+		}
+		print ITS1PARTIAL substr(@seqDNA[$best], @its1Start[$best] - 1, @its1End[$best] - @its1Start[$best] + 1);
+		if (length(@seqDNA[$best]) - @its1End[$best] - $anchorLen > 0) {
+		  print ITS1PARTIAL substr(@seqDNA[$best], @its1End[$best], $anchorLen);
+		} else {
+		  print ITS1PARTIAL substr(@seqDNA[$best], @its1End[$best]);
+		}
+	      } else {
+		if (@its1Start[$best] - 1 - @allanchorLens[0] > 0) {
+		  print ITS1PARTIAL substr(@seqDNA[$best], @its1Start[$best] - 1 - @allanchorLens[0], @allanchorLens[0]);
+		} else {
+		  print ITS1PARTIAL substr(@seqDNA[$best], 0, @its1Start[$best] - 1);
+		}
+		print ITS1PARTIAL substr(@seqDNA[$best], @its1Start[$best] - 1, @its1End[$best] - @its1Start[$best] + 1);
+		if (length(@seqDNA[$best]) - @its1End[$best] - @allanchorLens[1] > 0) {
+		  print ITS1PARTIAL substr(@seqDNA[$best], @its1End[$best], @allanchorLens[1]);
+		} else {
+		  print ITS1PARTIAL substr(@seqDNA[$best], @its1End[$best]);
+		}
+	      }
+	      print ITS1PARTIAL "\n";   # Write DNA sequence
+	    }
+	  }
+	}
+      }
+      
+      ## Write ITS2 sequence to file
+      if ($out_its2 == 1) {  # If ITS2 output is on
+	$seqPartLen = @its2End[$best] - @its2Start[$best] + 1;
+	if ($seqPartLen > 1) {
+	  if ( (($only_full == 0) && (@problemCode[$best] !~ m/[25]/)) || (($only_full == 1) && (@problemCode[$best] !~ m/[L25]/))) {
+	    if ($out_preserve == 1) {  # If sequence headers should be preserved
+	      print ITS2 $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	    } else {
+	      print ITS2 ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|ITS2 " . "Extracted ITS2 sequence " . @its2Start[$best] . "-" . @its2End[$best] . " (" . $seqPartLen . " bp)\n";   # Write FASTA definition line
+	    }
+	    if (uc($anchor) ne "HMM") {
+	      if (@its2Start[$best] - 1 - $anchorLen > 0) {
+		print ITS2 substr(@seqDNA[$best], @its2Start[$best] - 1 - $anchorLen, $anchorLen);
+	      } else {
+		print ITS2 substr(@seqDNA[$best], 0, @its2Start[$best] - 1);
+	      }
+	      print ITS2 substr(@seqDNA[$best], @its2Start[$best] - 1, @its2End[$best] - @its2Start[$best] + 1);
+	      if (length(@seqDNA[$best]) - @its2End[$best] - $anchorLen > 0) {
+		print ITS2 substr(@seqDNA[$best], @its2End[$best], $anchorLen);
+	      } else {
+		print ITS2 substr(@seqDNA[$best], @its2End[$best]);
+	      }
+	    } else {
+	      if (@its2Start[$best] - 1 - @allanchorLens[2] > 0) {
+		print ITS2 substr(@seqDNA[$best], @its2Start[$best] - 1 - @allanchorLens[2], @allanchorLens[2]);
+	      } else {
+		print ITS2 substr(@seqDNA[$best], 0, @its2Start[$best] - 1);
+	      }
+	      print ITS2 substr(@seqDNA[$best], @its2Start[$best] - 1, @its2End[$best] - @its2Start[$best] + 1);
+	      if (length(@seqDNA[$best]) - @its2End[$best] - @allanchorLens[3] > 0) {
+		print ITS2 substr(@seqDNA[$best], @its2End[$best], @allanchorLens[3]);
+	      } else {
+		print ITS2 substr(@seqDNA[$best], @its2End[$best]);
+	      }
+	    }
+	    print ITS2 "\n";   # Write DNA sequence
+	  }
+	  if ($out_partial > 0) {
+	    if (@problemCode[$best] !~ m/[L25]/) {
+	      if ($out_preserve == 1) {  # If sequence headers should be preserved
+		print ITS2PARTIAL $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	      } else {
+		print ITS2PARTIAL ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|ITS2 " . "Extracted Full ITS2 sequence " . @its2Start[$best] . "-" . @its2End[$best] . " (" . $seqPartLen . " bp)\n";   # Write FASTA definition line
+	      }
+	      if (uc($anchor) ne "HMM") {
+		if (@its2Start[$best] - 1 - $anchorLen > 0) {
+		  print ITS2PARTIAL substr(@seqDNA[$best], @its2Start[$best] - 1 - $anchorLen, $anchorLen);
+		} else {
+		  print ITS2PARTIAL substr(@seqDNA[$best], 0, @its2Start[$best] - 1);
+		}
+		print ITS2PARTIAL substr(@seqDNA[$best], @its2Start[$best] - 1, @its2End[$best] - @its2Start[$best] + 1);
+		if (length(@seqDNA[$best]) - @its2End[$best] - $anchorLen > 0) {
+		  print ITS2PARTIAL substr(@seqDNA[$best], @its2End[$best], $anchorLen);
+		} else {
+		  print ITS2PARTIAL substr(@seqDNA[$best], @its2End[$best]);
+		}
+	      } else {
+		if (@its2Start[$best] - 1 - @allanchorLens[2] > 0) {
+		  print ITS2PARTIAL substr(@seqDNA[$best], @its2Start[$best] - 1 - @allanchorLens[2], @allanchorLens[2]);
+		} else {
+		  print ITS2PARTIAL substr(@seqDNA[$best], 0, @its2Start[$best] - 1);
+		}
+		print ITS2PARTIAL substr(@seqDNA[$best], @its2Start[$best] - 1, @its2End[$best] - @its2Start[$best] + 1);
+		if (length(@seqDNA[$best]) - @its2End[$best] - @allanchorLens[3] > 0) {
+		  print ITS2PARTIAL substr(@seqDNA[$best], @its2End[$best], @allanchorLens[3]);
+		} else {
+		  print ITS2PARTIAL substr(@seqDNA[$best], @its2End[$best]);
+		}
+	      }
+	      print ITS2PARTIAL "\n";   # Write DNA sequence
+	    } else {
+	      if ($out_partial < $seqPartLen) {
+		if ($out_preserve == 1) {  # If sequence headers should be preserved
+		  print ITS2PARTIAL $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+		} else {
+		  print ITS2PARTIAL ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|ITS2 " . "Extracted Partial ITS2 sequence " . @its2Start[$best] . "-" . @its2End[$best] . " (" . $seqPartLen . " bp)\n";   # Write FASTA definition line
+		}
+		if (uc($anchor) ne "HMM") {
+		  if (@its2Start[$best] - 1 - $anchorLen > 0) {
+		    print ITS2PARTIAL substr(@seqDNA[$best], @its2Start[$best] - 1 - $anchorLen, $anchorLen);
+		  } else {
+		    print ITS2PARTIAL substr(@seqDNA[$best], 0, @its2Start[$best] - 1);
+		  }
+		  print ITS2PARTIAL substr(@seqDNA[$best], @its2Start[$best] - 1, @its2End[$best] - @its2Start[$best] + 1);
+		  if (length(@seqDNA[$best]) - @its2End[$best] - $anchorLen > 0) {
+		    print ITS2PARTIAL substr(@seqDNA[$best], @its2End[$best], $anchorLen);
+		  } else {
+		    print ITS2PARTIAL substr(@seqDNA[$best], @its2End[$best]);
+		  }
+		} else {
+		  if (@its2Start[$best] - 1 - @allanchorLens[2] > 0) {
+		    print ITS2PARTIAL substr(@seqDNA[$best], @its2Start[$best] - 1 - @allanchorLens[2], @allanchorLens[2]);
+		  } else {
+		    print ITS2PARTIAL substr(@seqDNA[$best], 0, @its2Start[$best] - 1);
+		  }
+		  print ITS2PARTIAL substr(@seqDNA[$best], @its2Start[$best] - 1, @its2End[$best] - @its2Start[$best] + 1);
+		  if (length(@seqDNA[$best]) - @its2End[$best] - @allanchorLens[3] > 0) {
+		    print ITS2PARTIAL substr(@seqDNA[$best], @its2End[$best], @allanchorLens[3]);
+		  } else {
+		    print ITS2PARTIAL substr(@seqDNA[$best], @its2End[$best]);
+		  }
+		}
+		print ITS2PARTIAL "\n";   # Write DNA sequence
+	      }
+	    }
+	  }
+	}
+      }
+
+      ## Output concatenated ITS1 + ITS2 sequences
+      if ($out_concat == 1) {
+	$seqPartLen1 = @its1End[$best] - @its1Start[$best] + 1;
+	$seqPartLen2 = @its2End[$best] - @its2Start[$best] + 1;
+	if (($seqPartLen1 >= $concat_minlen) && ($seqPartLen2 >= $concat_minlen)) {
+	  if ($out_preserve == 1) {  # If sequence headers should be preserved
+	    print CONCAT $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	  } else {
+	    print CONCAT ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|ITS1+2 " . "Concatenated ITS1 and ITS2 sequences (" . ($seqPartLen1 + $seqPartLen2) . " bp)\n";   # Write FASTA definition line
+	  }
+	  print CONCAT substr(@seqDNA[$best], @its1Start[$best] - 1, @its1End[$best] - @its1Start[$best] + 1);   # Write ITS1 DNA sequence
+	  print CONCAT "-----";  # Write spacer
+	  print CONCAT substr(@seqDNA[$best], @its2Start[$best] - 1, @its2End[$best] - @its2Start[$best] + 1);   # Write ITS2 DNA sequence
+	  print CONCAT "\n";  # Write newline
+	} else {
+	  if ($seqPartLen1 >= $concat_minlen) {
+	    if ($out_preserve == 1) {  # If sequence headers should be preserved
+	      print CONCAT $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	    } else {
+	      print CONCAT ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|ITS1 " . "ITS1 sequence (ITS2 too short) (" . $seqPartLen1 . " bp)\n";   # Write FASTA definition line
+	    }
+	    print CONCAT substr(@seqDNA[$best], @its1Start[$best] - 1, @its1End[$best] - @its1Start[$best] + 1);   # Write ITS1 DNA sequence
+	    print CONCAT "-----";  # Write spacer
+	    print CONCAT "\n";  # Write newline
+	  }
+	  if ($seqPartLen2 >= $concat_minlen) {
+	    if ($out_preserve == 1) {  # If sequence headers should be preserved
+	      print CONCAT $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	    } else {
+	      print CONCAT ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|ITS2 " . "ITS2 sequence (ITS1 too short) (" . $seqPartLen2 . " bp)\n";   # Write FASTA definition line
+	    }
+	    print CONCAT "-----";  # Write spacer
+	    print CONCAT substr(@seqDNA[$best], @its2Start[$best] - 1, @its2End[$best] - @its2Start[$best] + 1);   # Write ITS2 DNA sequence
+	    print CONCAT "\n";  # Write newline
+	  }
+	}
+      }
+
+      ## Print all sequences to the joined file for debugging
+      if ($out_joined == 1) {
+	$seqPartLen =  @ssuEnd[$best] - @ssuStart[$best] + 1;
+	if ($out_preserve == 1) {  # If sequence headers should be preserved
+	  print JOINED $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	} else {
+	  print JOINED ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|SSU " . "Extracted SSU sequence (" . $seqPartLen . " bp)\n";   # Write FASTA definition line
+	}
+	print JOINED substr(@seqDNA[$best], @ssuStart[$best] - 1, @ssuEnd[$best] - @ssuStart[$best] + 1) . "\n";   # Write DNA sequence
+	
+	$seqPartLen = @its1End[$best] - @its1Start[$best] + 1;
+	if ($out_preserve == 1) {  # If sequence headers should be preserved
+	  print JOINED $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	} else {
+	  print JOINED ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|ITS1 " . "Extracted ITS1 sequence " . @its1Start[$best] . "-" . @its1End[$best] . " (" . $seqPartLen . " bp)\n";   # Write FASTA definition line
+	}
+	print JOINED substr(@seqDNA[$best], @its1Start[$best] - 1, @its1End[$best] - @its1Start[$best] + 1) . "\n";   # Write DNA sequence
+	
+	$seqPartLen = @midEnd[$best] - @midStart[$best] + 1;
+	if ($out_preserve == 1) {  # If sequence headers should be preserved
+	  print JOINED $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	} else {
+	  print JOINED ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|5.8S " . "Extracted 5.8S sequence (" . $seqPartLen . " bp)\n";   # Write FASTA definition line
+	}
+	print JOINED substr(@seqDNA[$best], @midStart[$best] - 1, @midEnd[$best] - @midStart[$best] + 1) . "\n";   # Write DNA sequence
+	
+	$seqPartLen = @its2End[$best] - @its2Start[$best] + 1;
+	if ($out_preserve == 1) {  # If sequence headers should be preserved
+	  print JOINED $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	} else {
+	  print JOINED ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|ITS2 " . "Extracted ITS2 sequence (" . $seqPartLen . " bp)\n";   # Write FASTA definition line
+	}
+	print JOINED substr(@seqDNA[$best], @its2Start[$best] - 1, @its2End[$best] - @its2Start[$best] + 1) . "\n";   # Write DNA sequence
+	
+	$seqPartLen = @lsuEnd[$best] - @lsuStart[$best] + 1;
+	if ($out_preserve == 1) {  # If sequence headers should be preserved
+	  print JOINED $headers{@seqID[$best]} . "\n";   # Write FASTA definition line
+	} else {
+	  print JOINED ">" . @seqID[$best] . "|" . @seqITSType[$best] . "|LSU " . "Extracted LSU sequence (" . $seqPartLen . " bp)\n";   # Write FASTA definition line
+	}
+	print JOINED substr(@seqDNA[$best], @lsuStart[$best] - 1, @lsuEnd[$best] - @lsuStart[$best] + 1) . "\n";   # Write DNA sequence
+      }
+      
+      
+      if ($out_results == 1) {
+	## Print info on all matches, also not top ones to the results file...
+	for ($i = 0; $i < scalar(@seqITSType); $i++) {   # Go through all the possible ITS types...
+	  print RESULTS @seqITSType[$i] . ": " . @seqDomCounts[$i] . " " . @seqAvgE[$i] . " " . @seqAvgScore[$i];   # Write some info on this type (Type, Domain count, Average E-value, Average score)
+	  if ($i < scalar(@seqITSType) - 1) {   # If this is no the last domain type
+	    print RESULTS ", ";   # Write a comma
+	  }
+	}
+	print RESULTS "\n";   # Write end of line
+      }
+    }
+    
+    ## Undefine all used arrays for the next round...
+    undef @seqID;
+    undef @seqITSType;
+    undef @seqCompl;
+    undef @seqDomCounts;
+    undef @seqAvgE;
+    undef @seqAvgScore;
+    undef @seqScoreSum;
+    undef @seqDNA;
+    undef @allSeqDomains;
+    undef @dnaStart;
+    undef @dnaEnd;
+    undef @ssuStart;
+    undef @ssuEnd;
+    undef @lsuStart;
+    undef @lsuEnd;
+    undef @midStart;
+    undef @midEnd;
+    undef @its1Start;
+    undef @its1End;
+    undef @its2Start;
+    undef @its2End;
+    undef @startDomain;
+    undef @endDomain;
+    undef @domain_order;
+    undef @sorted_domain_order;
+    undef @problem;
+    undef @problemCode;
+    undef @anchorLens;
+  }
+  if (@item[0] ne "") {   # Add this entry to the set (regardless if the entry has the same ID as entries already in the set), as long as it is non-empty
+    push(@seqID, @item[0]);   # Add sequence ID
+    push(@seqITSType, @item[1]);   # Add ITS type
+    push(@seqCompl, @item[2]);   # Add main/complementary strand info
+    push(@seqDomCounts, @item[3]);   # Add domain count
+    push(@seqAvgE, @item[4]);   # Add average E-value
+    push(@seqAvgScore, @item[5]);   # Add average score
+    push(@seqScoreSum, @item[6]);   # Add sum-of-scores
+    push(@seqDNA, @item[7]);   # Add DNA sequence
+    
+    ## Determine first and last domains, and their positions
+    ## Set variables to unrealistic values
+    $dnaEnd = length(@item[7]);
+    $startDomain = "***";
+    $endDomain = "***";
+    $dnaStart = 1;
+    $allDomains = "";
+    $ssuStart = 1;
+    $ssuEnd = 0;
+    $midStart = 1;
+    $midEnd = 0;
+    $lsuStart = 1;
+    $lsuEnd = 0;
+    $its1Start = 1;
+    $its1End = length(@item[7]);
+    $its2Start = 1;
+    $its2End = length(@item[7]);
+    $problem = "";
+    $problemCode = "";
+
+    $ssuFound = 0;
+    $lsuFound = 0;
+    $midSFound = 0;
+    $midEFound = 0;
+    $order = "";
+    undef @hitanchorlens;
+    
+    for ($i = 8; $i < scalar(@item); $i++) {   # Go through the list of found domains in this sequence
+      ($hitStart,$hitEnd,$hitProfile,$hitScore,$hitEval,$hitanchorlen) = split(';',@item[$i]);   # Separate the hit stats into variables
+      $allDomains = $allDomains . $hitProfile . " ";   # Add found domain to the list of all domains
+
+#      if ($hitStart < $dnaStart) {   # If this domain is the first one so far
+#	$dnaStart = $hitStart;   # Set the start of the ITS sequence to this domain's start
+#	$startDomain = $hitProfile;   # Set this domain as the starting domain
+#      }
+#      if ($hitEnd > $dnaEnd) {   # If this domain is the last one so far
+#	$dnaEnd = $hitEnd;   # Set the end of the ITS sequence to this domain's end
+#	$endDomain = $hitProfile;   # Set this domain as the ending domain
+#      }
+
+      if (substr($hitProfile,0,5) eq "1_SSU" ) {   # If this domain is the SSU's end
+	$dnaStart = $hitStart;   # Set the start of the ITS sequence to this domain's start
+	$startDomain = $hitProfile;   # Set this domain as the starting domain
+	$ssuStart = 1;   # Set the start of the SSU sequence to the start of the sequence
+	$ssuEnd = $hitEnd;   # Set the end of the SSU sequence to this domain's end
+	$its1Start = $hitEnd + 1;   # Set the start of the ITS1 sequence to right after this domain's end
+	if ($midEFound == 0) {
+	  $its2Start = $hitEnd + 1;   # Set the end of the ITS2 sequence to right after this domain's end
+	}
+	$ssuFound = 1;
+	$order = $order . "1";
+	@hitanchorlens[1] = $hitanchorlen;
+      }
+
+      if (substr($hitProfile,0,5) eq "2_5.8" ) {   # If this domain is the 5.8S's start
+	if ($startDomain eq "***") {
+	  $dnaStart = 1;   # Set the start of the ITS sequence to the start of the sequence
+	  $startDomain = $hitProfile;   # Set this domain as the starting domain
+	}
+	$its1End = $hitStart - 1;   # Set the end of the ITS1 sequence to right before this domain's start
+	if ($midEFound == 0) {
+	  $its2Start = $hitEnd + 1;   # Set the start of the ITS2 sequence to right after this domain's end
+	}
+	$midStart = $hitStart;   # Set the start of the 5.8S sequence to this domain's start
+	$midSFound = 1;
+	$order = $order . "2";
+	@hitanchorlens[2] = $hitanchorlen;
+      }
+
+      if (substr($hitProfile,0,5) eq "3_End" ) {   # If this domain is the 5.8S's end
+	if ($startDomain eq "***") {
+	  $dnaStart = 1;   # Set the start of the ITS sequence to the start of the sequence
+	  $startDomain = $hitProfile;   # Set this domain as the starting domain
+	}
+	if ($midSFound == 0) {
+	  $its1End = $hitStart - 1;   # Set the end of the ITS1 sequence to right before this domain's start
+	}
+	$its2Start = $hitEnd + 1;   # Set the end of the ITS2 sequence to right after this domain's end
+	$midEnd = $hitEnd;   # Set the end of the 5.8S sequence to this domain's end
+	$midEFound = 1;
+	$order = $order . "3";
+	@hitanchorlens[3] = $hitanchorlen;
+      }
+
+      if (substr($hitProfile,0,5) eq "4_LSU" ) {   # If this domain is the LSU's start
+	if ($startDomain eq "***") {
+	  $dnaStart = 1;   # Set the start of the ITS sequence to the start of the sequence
+	  $startDomain = $hitProfile;   # Set this domain as the starting domain
+	}
+	$dnaEnd = $hitEnd;   # Set the end of the ITS sequence to this domain's end
+	$endDomain = $hitProfile;   # Set this domain as the ending domain
+	$lsuStart = $hitStart;   # Set the start of the LSU sequence to the start of the this domain
+	$lsuEnd = length(@item[7]);   # Set the end of the LSU sequence to the end of the sequence
+	$its2End = $hitStart - 1;   # Set the end of the ITS2 sequence to right before this domain's start
+	if ($midSFound == 0) {
+	  $its1End = $hitStart - 1;   # Set the end of the ITS1 sequence to right before this domain's start
+	}
+	$lsuFound = 1;
+	$order = $order . "4";
+	@hitanchorlens[4] = $hitanchorlen;
+      }
+    }
+
+    if ($ssuFound == 0) {
+      if ($problem ne "") {
+	$problem = $problem . "; ";
+      }
+      $problem = $problem . "End of SSU sequence not found";
+      $problemCode = $problemCode . "S";
+      $order = "1" .  $order;
+    }
+
+    if ($lsuFound == 0) {
+      if ($problem ne "") {
+	$problem = $problem . "; ";
+      }
+      $problem = $problem . "Start of LSU sequence not found";
+      $problemCode = $problemCode . "L";
+      $order = $order . "4";
+    }
+
+    if (($midSFound == 0) && ($midEFound == 0)) {
+      if ($problem ne "") {
+	$problem = $problem . "; ";
+      }
+      $problem = $problem . "The 5.8S sequence was not found at all";
+      $problemCode = $problemCode . "5";
+    } else {
+      if ($midSFound == 0) {
+	if ($problem ne "") {
+	  $problem = $problem . "; ";
+	}
+	$problem = $problem . "Start of 5.8S sequence not found";
+	$problemCode = $problemCode . "1";
+      }
+      if ($midEFound == 0) {
+	if ($problem ne "") {
+	  $problem = $problem . "; ";
+	}
+	$problem = $problem . "End of 5.8S sequence not found";
+	$problemCode = $problemCode . "2";
+      }
+    }
+
+    if ($dnaEnd - $dnaStart > 1500) {
+      if ($problem ne "") {
+	$problem = $problem . "; ";
+      }
+      $problem = $problem . "ITS region is suspiciously long (> 1500 bp)";
+      $problemCode = $problemCode . "B";
+    }
+
+    if (length($order) == 4) {
+      if ($order ne "1234") {
+	if ($problem ne "") {
+	  $problem = $problem . "; ";
+	}
+	$problem = $problem . "Domains found in wrong order, sequence may be chimeric";
+	$problemCode = $problemCode . "C";
+      }
+    } else {
+      if ((substr($order,0,1) ne "1") || (substr($order,-1) ne "4")) {
+	if ($problem ne "") {
+	  $problem = $problem . "; ";
+	}
+	$problem = $problem . "Domains found in wrong order, sequence may be chimeric";
+	$problemCode = $problemCode . "C";
+      } else {
+	if (($midSFound == 1) && ($midEFound == 1)) {
+	  if ($order !~ m/23/) {
+	    if ($problem ne "") {
+	      $problem = $problem . "; ";
+	    }
+	    $problem = $problem . "Domains found in wrong order, sequence may be chimeric";
+	    $problemCode = $problemCode . "C";
+	  }
+	}
+      }
+    }
+
+    if ($its1End - $its1Start < 0) {  # 5.8S overlaps SSU
+      if (($midSFound == 1) && ($ssuFound == 1)) {
+	$problemCode = $problemCode . "OC";
+	$its1Start = 0;
+	$its1End = 0;
+	if ($problem ne "") {
+	  $problem = $problem . "; ";
+	}
+	$problem = $problem . "SSU seems to overlap 5.8S, sequence may be chimeric";
+      } else {
+	$problemCode = $problemCode . "X";
+	$its1Start = 0;
+	$its1End = 0;
+	if ($problem ne "") {
+	  $problem = $problem . "; ";
+	}
+	$problem = $problem . "No ITS1 sequence";
+      }
+    }
+    if ($its2End - $its2Start < 0) {  # 5.8S overlaps LSU
+      if (($midEFound == 1) && ($lsuFound == 1)) {
+	$problemCode = $problemCode . "PC";
+	$its2Start = 0;
+	$its2End = 0;
+	if ($problem ne "") {
+	  $problem = $problem . "; ";
+	}
+	$problem = $problem . "LSU seems to overlap 5.8S, sequence may be chimeric";
+       } else {
+	$problemCode = $problemCode . "Y";
+	$its2Start = 0;
+	$its2End = 0;
+	if ($problem ne "") {
+	  $problem = $problem . "; ";
+	}
+	$problem = $problem . "No ITS2 sequence";
+      }
+    }
+
+
+    if (($problemCode =~ m/[15]/) && ($problemCode =~ m/[S]/)) {  # Sequence lack all indications of ITS1
+      $its1Start = 0;
+      $its1End = 0;
+    }
+    if (($problemCode =~ m/[25]/) && ($problemCode =~ m/[L]/)) {  # Sequence lack all indications of ITS2
+      $its2Start = 0;
+      $its2End = 0;
+    }
+
+
+    $allhitanchorlens = @hitanchorlens[1] . "," . @hitanchorlens[2] . "," . @hitanchorlens[3] . "," . @hitanchorlens[4];
+
+    push(@allSeqDomains,$allDomains);   # Add list of all domains
+    push(@dnaStart, $dnaStart);   # Add start of the ITS sequence
+    push(@startDomain, $startDomain);   # Add start domain
+    push(@dnaEnd, $dnaEnd);   # Add end of ITS sequence
+    push(@endDomain, $endDomain);   # Add end domain
+    push(@ssuStart, $ssuStart);   # Add start of the SSU sequence
+    push(@ssuEnd, $ssuEnd);   # Add end of the SSU sequence
+    push(@midStart, $midStart);   # Add start of the 5.8S sequence
+    push(@midEnd, $midEnd);   # Add end of the 5.8S sequence
+    push(@lsuStart, $lsuStart);   # Add start of the LSU sequence
+    push(@lsuEnd, $lsuEnd);   # Add end of the LSU sequence
+    push(@its1Start, $its1Start);   # Add start of the ITS1 sequence
+    push(@its1End, $its1End);   # Add end of the ITS1 sequence
+    push(@its2Start, $its2Start);   # Add start of the ITS2 sequence
+    push(@its2End, $its2End);   # Add end of the ITS2 sequence
+    push(@problem, $problem);  # Add potential problem info
+    push(@problemCode, $problemCode);  # Add potential problem info in code form
+    push(@anchorLens, $allhitanchorlens);  # Add the anchor lengths
+  }
+  $lc++;   # Increase the line count by one
+}
+
+## Save results to the summary file
+if ($out_sum == 1) {   # If summary file should be written
+  $itsTotal = 0;   # Reset the total ITS sum
+  foreach $typeCount (@itsCounts) {   # Add ITSs from all different origins
+    $itsTotal += $typeCount;   # Add the number of ITSs for this origin
+  }
+  ## Write info on the found ITS sequences to the summary file
+  print SUMMARY "Sequences detected as ITS by ITSx:\t$itsTotal\n";
+  print SUMMARY "  On main strand:         \t$itsMain\n";
+  print SUMMARY "  On complementary strand:\t$itsCompl\n";
+  if ($allow_reorder == 0) {   # If re-ordering of domains is not allowed
+    print SUMMARY "Sequences detected as chimeric by ITSx:\t$itsChimeric\n";   # Write the number of reported chimeric sequences to the summary file
+  }
+  ## Write info on the found ITS sequence types to the summary file
+  print SUMMARY "ITS sequences by preliminary origin:\n";
+  print SUMMARY "  Alveolates:      \t" . int(@itsCounts[ord("A")]) . "\n";
+  print SUMMARY "  Amoebozoa:       \t" . int(@itsCounts[ord("D")]) . "\n";
+  print SUMMARY "  Bacillariophyta: \t" . int(@itsCounts[ord("C")]) . "\n";
+  print SUMMARY "  Brown algae:     \t" . int(@itsCounts[ord("I")]) . "\n";
+  print SUMMARY "  Bryophytes:      \t" . int(@itsCounts[ord("B")]) . "\n";
+  print SUMMARY "  Euglenozoa:      \t" . int(@itsCounts[ord("E")]) . "\n";
+  print SUMMARY "  Eustigmatophytes:\t" . int(@itsCounts[ord("U")]) . "\n";
+  print SUMMARY "  Fungi:           \t" . int(@itsCounts[ord("F")]) . "\n";
+  print SUMMARY "  Green algae:     \t" . int(@itsCounts[ord("G")]) . "\n";
+  print SUMMARY "  Liverworts:      \t" . int(@itsCounts[ord("L")]) . "\n";
+  print SUMMARY "  Metazoa:         \t" . int(@itsCounts[ord("M")]) . "\n";
+  print SUMMARY "  Microsporidia:   \t" . int(@itsCounts[ord("N")]) . "\n";
+  print SUMMARY "  Oomycetes:       \t" . int(@itsCounts[ord("O")]) . "\n";
+  print SUMMARY "  Prymnesiophytes: \t" . int(@itsCounts[ord("P")]) . "\n";
+  print SUMMARY "  Raphidophytes:   \t" . int(@itsCounts[ord("Q")]) . "\n";
+  print SUMMARY "  Red algae:       \t" . int(@itsCounts[ord("H")]) . "\n";
+  print SUMMARY "  Rhizaria:        \t" . int(@itsCounts[ord("R")]) . "\n";
+  print SUMMARY "  Synurophyceae:   \t" . int(@itsCounts[ord("S")]) . "\n";
+  print SUMMARY "  Tracheophyta:    \t" . int(@itsCounts[ord("T")]) . "\n";
+  print SUMMARY "-----------------------------------------------------------------\n";
+  close (SUMMARY);   # Close the summary file
+}
+
+if ($out_results == 1) {
+  close (RESULTS);   # Close the results file
+}
+close (RAWOUT);   # Close the raw output file
+close (PROBLEM);   # Close the file for problematic entries
+if ($foundProblem == 0) {
+  `rm $output.problematic.txt 2> /dev/null`;
+}
+if ($out_pos == 1) {
+  close (POS);   # Close the positions file
+}
+if ($out_fasta == 1) {   # If FASTA output is on
+  close (FASTA);   # Close the FASTA output file
+  if ($allow_reorder == 0) {   # If re-ordering of domains is not allowed
+    close (CHIMERA);   # Close the chimera file
+    if ($foundChimera == 0) {
+      `rm $output.chimeric.fasta 2> /dev/null`;
+    }
+  }
+  if ($out_partial > 0) {
+    close FULLPARTIAL;
+  }
+}
+if ($out_ssu == 1) {
+  close (SSU);   # Close the SSU file
+}
+if ($out_lsu == 1) {
+  close (LSU);   # Close the LSU file
+}
+if ($out_58S == 1) {
+  close (MID);   # Close the 58S file
+}
+if ($out_its1 == 1) {
+  close (ITS1);   # Close the ITS1 file
+  if ($out_partial > 0) {
+    close ITS1PARTIAL;
+  }
+}
+if ($out_its2 == 1) {
+  close (ITS2);   # Close the ITS2 file
+  if ($out_partial > 0) {
+    close ITS2PARTIAL;
+  }
+}
+if ($out_concat == 1) {
+  close CONCAT;
+}
+
+if ($out_not == 1) {   # If not-found output is on
+  open (NOTFOUND, "$output\_no_detections.txt");   # Open the not-found output file
+  while ($line = <NOTFOUND>) {  # Read all entries from file
+    chomp($line);  # Remove newline char
+    push(@nodetectionlist,$line);  # Add to non-detection list
+  }
+  close NOTFOUND;
+
+  open (NOTFOUND, ">$output\_no_detections.fasta");   # Create a not-found FASTA output file
+  foreach $seqID (@nodetectionlist) {  # For all non-detections
+    $seq = $sequenceDB{"$seqID"};  # Get sequence from sequence database
+    print NOTFOUND ">$seqID\n";  # Print not found sequence ID
+    print NOTFOUND $seq . "\n";  # Print not found sequence
+  }
+  close NOTFOUND;
+}
+
+## Clean up and finish
+
+if ($pipeline == 0) {   # If ITSx is not called from the pipeline mode (i.e. from ITSx)
+  if ($save_raw == 1) {   # If raw data should be saved
+    `mv $tempDir $output\_ITSx_raw_output`;   # Change the name of the temporary directory to ..._ITSx_raw_output
+  } else {   # Else, discard the raw data
+    `rm -rf $tempDir`;   # Remove the temporary directory
+  }
+}
+
+## Get the current time and output a finished message
+$now = localtime;
+if ($silent == 0) {
+  print STDERR "$now : Extraction finished!\n";
+  print STDERR "-----------------------------------------------------------------\n";
+  print STDERR "Thank you for using ITSx!\n";
+  print STDERR "Please report bugs or unsupported lineages to itsx\@microbiology.se\n";
+  print STDERR "\n";
+}
+
+## Write end time a summary file
+if ($pipeline == 0) {    # If not running in pipeline mode
+  if ($out_sum == 1) {   # If summary output is on
+    open (SUMMARY, ">>$output.summary.txt");   # Append to the summary file
+    print SUMMARY "ITSx run finished at $now.\n";   # Write ending time for the analysis
+    close (SUMMARY);   # Close summary file
+  }
+}
+
+sub hmmerSearch {
+  $hmmerCommand = $_[0];
+  $outputFile = $_[1];
+  $strand = $_[2];
+  $profileSet = $_[3];
+  open (HMMEROUTPUT, ">$outputFile");
+  open (HMMER, "$hmmerCommand |");
+  $totalHitCount = 0;
+  $hitCount = 0;
+  $SSUCount = 0;
+  $LSUCount = 0;
+  $startCount = 0;
+  $endCount = 0;
+  $maxCount = 1;
+  while (chomp($line = <HMMER>)) {
+    if (substr($line,0,6) eq "Query:") {
+      $hitCount = 0;
+      $SSUCount = 0;
+      $LSUCount = 0;
+      $startCount = 0;
+      $endCount = 0;
+      undef @bestScore;
+      undef @bestEntry;
+      
+      $query = substr($line,7);
+      $queryLength = $query;
+      $queryLength =~ s/.*  *//;
+      $queryLength =~ s/[^0-9]//g;
+      $query =~ s/  *//;
+      $query =~ s/  *.*//;
+      
+      print HMMEROUTPUT "## New query:\t$query\t$queryLength\n";
+
+    }
+    if (substr($line,0,12) eq "Description:") {
+      $desc = $line;
+    }
+    if (substr($line,0,3) eq ">> ") {
+      ($tempshit,$hmmerSubjectName) = split(' ',$line);
+    }
+    if ($line =~ m/[0-9] ! /) {
+      $stats = $line;
+      $stats =~ s/  */\t/g;
+      ($empty,$no,$excl,$score) = split('\t',$stats);
+      $hitCount++;
+      $totalHitCount++;
+      if ($maxCount == 0) {
+	print HMMEROUTPUT "$query\t$hmmerSubjectName\t$queryLength$stats\n";
+      } else {
+	if (substr($hmmerSubjectName,0,5) eq "1_SSU") {
+	  $SSUCount++;
+	  if ($SSUCount <= $maxCount) {
+	    @bestScore[1] = $score;
+	    @bestEntry[1] = "$query\t$hmmerSubjectName\t$queryLength$stats\n";
+	  } else {
+	    if ($score > @bestScore[1]) {
+	      @bestScore[1] = $score;
+	      @bestEntry[1] = "$query\t$hmmerSubjectName\t$queryLength$stats\n";
+	    }
+	  }
+	}
+	if (substr($hmmerSubjectName,0,5) eq "4_LSU") {
+	  $LSUCount++;
+	  if ($LSUCount <= $maxCount) {
+	    @bestScore[4] = $score;
+	    @bestEntry[4] = "$query\t$hmmerSubjectName\t$queryLength$stats\n";
+	  } else { 
+	    if ($score > @bestScore[4]) {
+	      @bestScore[4] = $score;
+	      @bestEntry[4] = "$query\t$hmmerSubjectName\t$queryLength$stats\n";
+	    }
+	  }
+	}
+	if (substr($hmmerSubjectName,0,5) eq "2_5.8") {
+	  $startCount++;
+	  if ($startCount <= $maxCount) {
+	    @bestScore[2] = $score;
+	    @bestEntry[2] = "$query\t$hmmerSubjectName\t$queryLength$stats\n";
+	  } else {
+	    if ($score > @bestScore[2]) {
+	      @bestScore[2] = $score;
+	      @bestEntry[2] = "$query\t$hmmerSubjectName\t$queryLength$stats\n";
+	    }
+	  }
+	}
+	if (substr($hmmerSubjectName,0,5) eq "3_End") {
+	  $endCount++;
+	  if ($endCount <= $maxCount) {
+	    @bestScore[3] = $score;
+	    @bestEntry[3] = "$query\t$hmmerSubjectName\t$queryLength$stats\n";
+	  } else {
+	    if ($score > @bestScore[3]) {
+	      @bestScore[3] = $score;
+	      @bestEntry[3] = "$query\t$hmmerSubjectName\t$queryLength$stats\n"
+	    }
+	  }
+	}
+      }
+    }
+    if (substr($line,0,2) eq "//") {
+      if ($maxCount > 0) {
+	if ($SSUCount > 0) {
+	  print HMMEROUTPUT @bestEntry[1];
+	}
+	if ($startCount > 0) {
+	  print HMMEROUTPUT @bestEntry[2];
+	}
+	if ($endCount > 0) {
+	  print HMMEROUTPUT @bestEntry[3];
+	}
+	if ($LSUCount > 0) {
+	  print HMMEROUTPUT @bestEntry[4];
+	}
+      }
+      print HMMEROUTPUT "//\n";
+    }
+  }
+  close(HMMEROUTPUT);
+  $now = localtime;
+  if ($silent == 0) {
+    if ($strand eq "M") {
+      print STDERR "    $now : " . ucfirst($profileIndex{$profileSet}) . " analysis of main strand finished.\n";   # Print finished type
+    } else {
+      print STDERR "    $now : " . ucfirst($profileIndex{$profileSet}) . " analysis of complementary strand finished.\n";   # Print finished type
+    }
+  }
+}
+
+
+## Please send beers, pizzas, cakes, fruit pies, job positions and other types of feedback to:
+## johan.bengtsson [at] microbiology.se
+## Looking forward to hearing from you.... visit my website: www.microbiology.se for info on my research
+## //Johan Bengtsson, 2012-2014
diff -r 000000000000 -r f82c70f54bd7 ITSx.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx.xml	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,172 @@
+<tool id="ITSx" name="ITSx Extractor" version="1.0.6">
+
+  <description> 
+  ITSx -- Identifies ITS sequences and extracts the ITS region
+  </description>
+
+  <command interpreter="perl">
+  ITSx -i $input --detailed_results T --cpu $cpu $preserve $reset 
+  </command>
+  <requirements>
+	<requirement type="package" version="3.1b1">hmmer</requirement>
+  </requirements>
+  <inputs>
+	<param name="input" type="data" format="fasta" label="Input Fasta"/>
+	<param name="cpu" type="integer" value="1" label="cpu"/>
+	<param name="complement" type="boolean" checked="true" truevalue="--complement T" falsevalue="--complement F" label="Checks both DNA strands against the database"/>
+	<param name="heuristics" type="boolean" checked="false" truevalue="--heuristics T" falsevalue="--heuristics F" label="Use HMMER's heuristic filtering"/>
+	<param name="reset" type="boolean" checked="false" truevalue="--reset T" falsevalue="--reset F" label="Re-creates the HMM-database before ITSx is run"/>
+	<param name="preserve" type="boolean" checked="false" truevalue="--preserve T" falsevalue="--preserve F" label=" Preserve sequence headers instead of printing out ITSx headers"/>
+  </inputs>
+
+  <outputs>
+    <data name="ITS1" format="fasta" label="Extracted ITS1 Fasta File" from_work_dir="ITSx_out.ITS1.fasta"/>
+    <data name="ITS2" format="fasta" label="Extracted ITS2 Fasta File" from_work_dir="ITSx_out.ITS2.fasta"/>
+    <data name="fullfasta" format="fasta" label="Full Fasta of ITS extracted" from_work_dir="ITSx_out.full.fasta"/>
+    <data name="graph" format="txt" label="Graph of ITS regions" from_work_dir="ITSx_out.graph"/>
+    <data name="nodetect" format="fasta" label="No ITS region" from_work_dir="ITSx_out_no_detections.fasta"/>
+    <data name="positions" format="tabular" label="ITSx feature positions" from_work_dir="ITSx_out.positions.txt"/>
+    <data name="problematic" format="tabular" label="Problematic sequences" from_work_dir="ITSx_out.problematic.txt"/>
+    <data name="summary" format="txt" label="ITSx summary" from_work_dir="ITSx_out.summary.txt"/>
+    <data name="extractions" format="tabular" label="ITSx extraction results" from_work_dir="ITSx_out.extraction.results"/>
+  </outputs>
+
+  <stdio>
+        <regex match="ITSx" source="both" level="log"/>
+        <regex match="analysis" source="both" level="log"/>
+        <regex match="ERROR" source="both" level="fatal"/>
+        <regex match="error" source="both" level="fatal"/>
+  </stdio>
+
+  <test></test>
+  <help>
+ITSx -- Identifies ITS sequences and extracts the ITS region
+
+Source code available at:
+http://microbiology.se/software/itsx
+
+Version: 1.0.6
+ITSx -- Identifies ITS sequences and extracts the ITS region
+Copyright (C) 2012-2013 Johan Bengtsson-Palme et al.
+Contact: Johan Bengtsson-Palme, johan[at]microbiology.se
+Programmer: Johan Bengtsson-Palme
+
+Full installation instructions can be found in the User's Guide.
+A quick installation guide follows below.
+
+ITSx requires Perl and HMMER3.
+
+1) Perl is usually installed on Unix-like systems by default. If not, it can be retrieved from http://www.perl.org/
+
+2) HMMER3 can be found at http://hmmer.janelia.org/software
+Download it and follow the on site instructions for installation.
+
+3) Obtain the ITSx package from http://microbiology.se/software/itsx
+Unpack the tarball and move into the newly created "ITSx" directory.
+
+4) Copy the ITSx file and the ITSx_db directory to your preferred bin directory.
+
+5) To test if ITSx was successfully installed type "ITSx --help" on the command-line. You should now see the ITSx help message.
+
+To run ITSx, you need a FASTA-formatted output file. You can e.g. use the test.fasta file supplied with the package. To check for ITS sequences in the test file, type "ITSx -i test.fasta -o test" on the command line. If you are on a multicore machine, you might want to use the "--cpu 2" option to speed up the processes by using two (or more) cores.
+
+New features in this version:
+- Fixed a bug causing over-reporting of chimeras
+
+
+If you encounter a bug or some other strange behaviour, please report it to:
+johan[at]microbiology.se
+
+This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.You should have received a copy of the GNU General Public License along with this program, in a file called 'license.txt'. If not, see: http://www.gnu.org/licenses/.
+
+----
+
+Usage: ITSx -i [input file] -o [output file]
+
+Options:
+
+-i {file} : DNA FASTA input file to investigate
+
+-o {file} : Base for the names of output file(s)
+
+-p {directory} : A path to a directory of HMM-profile collections representing ITS conserved regions, default is in the same directory as ITSx itself
+
+--date {T or F} : Adds a date and time stamp to the output directory, off (F) by default
+
+--reset {T or F} : Re-creates the HMM-database before ITSx is run, off (F) by default
+
+Sequence selection options:
+
+-t {character code} : Profile set to use for the search, see the User's Guide (comma-separated), default is all
+
+-E {value} : Domain E-value cutoff for a sequence to be included in the output, default = 1e-5
+
+-S {value} : Domain score cutoff for a sequence to be included in the output, default = 0
+
+-N {value} : The minimal number of domains that must match a sequence before it is included, default = 2
+
+--selection_priority {sum, domains, eval, score} : Selects what will be of highest priority when determining the origin of the sequence, default is sum
+
+--search_eval {value} : The E-value cutoff used in the HMMER search, high numbers may slow down the process, cannot be used with the --search_score option, default is 0.01
+
+--search_score {value} : The score cutoff used in the HMMER search, low numbers may slow down the process, cannot be used with the --search_eval option, default is to used E-value cutoff, not score
+
+--allow_single_domain {e-value,score or F} : Allow inclusion of sequences that only find a single domain, given that they meet the given E-value and score thresholds, on with parameters 1e-9,0 by default
+
+--allow_reorder {T or F} : Allows profiles to be in the wrong order on extracted sequences, off (F) by default
+
+--complement {T or F} : Checks both DNA strands against the database, creating reverse complements, on (T) by default
+
+--cpu {value} : the number of CPU threads to use, default is 1
+
+--multi_thread {T or F} : Multi-thread the HMMER-search, on (T) if number of CPUs (--cpu option > 1), else off (F) by default
+
+--heuristics {T or F} : Selects whether to use HMMER's heuristic filtering, off (F) by default
+
+Output options:
+
+--summary {T or F} : Summary of results output, on (T) by default
+
+--graphical {T or F} : 'Graphical' output, on (T) by default
+
+--fasta {T or F} : FASTA-format output of extracted ITS sequences, on (T) by default
+
+--preserve {T or F} : Preserve sequence headers in input file instead of printing out ITSx headers, off (F) by default
+
+--save_regions {SSU,ITS1,5.8S,ITS2,LSU,all,none} : A comma separated list of regions to output separate FASTA files for, 'ITS1,ITS2' by default
+
+--anchor {integer or HMM} : Saves an additional number of bases before and after each extracted region. If set to 'HMM' all bases matching the corresponding HMM will be output, default = 0
+
+--partial {integer} : Saves additional FASTA-files for full and partial ITS sequences longer than the specified cutoff, default = 0 (off)
+
+--concat {T or F} : Saves a FASTA-file with concatenated ITS sequences (with 5.8S removed), off (F) by default
+
+--minlen {integer} : Minimum length the ITS regions must be to be outputted in the concatenated file (see above), default = 0
+
+--positions {T or F} : Table format output containing the positions ITS sequences were found in, on (T) by default
+
+--table {T or F} : Table format output of sequences containing probable ITS sequences, off (F) by default
+
+--not_found {T or F} : Saves a list of non-found entries, on (T) by default
+
+--detailed_results {T or F} : Saves a tab-separated list of all results, off (F) by default
+
+--truncate {T or F} : Truncates the FASTA output to only contain the actual ITS sequences found, on (T) by default
+
+--silent {T or F} : Supresses printing progress info to stderr, off (F) by default
+
+--graph_scale {value} : Sets the scale of the graph output, if value is zero, a percentage view is shown, default = 0
+
+--save_raw {T or F} : Saves all raw data for searches etc. instead of removing it on finish, off (F) by default
+
+-h : displays this help message
+
+--help : displays this help message
+
+--bugs : displays the bug fixes and known bugs in this version of ITSx
+
+--license : displays licensing information
+
+  </help>
+
+</tool>
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diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/A.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/A.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,13640 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_eighta_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:48:49 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 875354829
+STATS LOCAL MSV       -7.4772  0.72750
+STATS LOCAL VITERBI   -8.4131  0.72750
+STATS LOCAL FORWARD   -3.2493  0.72750
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.02810  1.19053  1.12475  1.42869
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_eightb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:48:56 2012
+NSEQ  5
+EFFN  3.334961
+CKSUM 2194532692
+STATS LOCAL MSV       -8.0757  0.71931
+STATS LOCAL VITERBI   -7.9285  0.71931
+STATS LOCAL FORWARD   -3.6374  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.20861  1.12285  1.26075  1.26814
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  0.00000        *
+      1   2.95026  3.59174  0.11672  3.49682      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      2   3.43763  0.12967  3.48690  2.83229      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      3   2.95026  3.59174  0.11672  3.49682      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      4   3.43763  0.12967  3.48690  2.83229      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      5   3.43763  0.12967  3.48690  2.83229      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      6   2.95026  3.59174  0.11672  3.49682      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      7   2.95026  3.59174  0.11672  3.49682      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      8   3.43763  0.12967  3.48690  2.83229      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      9   3.09257  2.59766  3.14057  0.17804      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     10   2.95026  3.59174  0.11672  3.49682     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     11   2.95026  3.59174  0.11672  3.49682     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     12   3.43763  0.12967  3.48690  2.83229     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     13   2.44734  1.18879  2.51771  0.63820     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     14   3.43763  0.12967  3.48690  2.83229     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     15   3.09257  2.59766  3.14057  0.17804     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     16   3.43763  0.12967  3.48690  2.83229     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     17   3.43763  0.12967  3.48690  2.83229     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     18   0.14138  3.38419  2.80447  3.28622     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     19   2.95026  3.59174  0.11672  3.49682     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     20   3.43763  0.12967  3.48690  2.83229     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     21   3.43763  0.12967  3.48690  2.83229     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     22   2.95026  3.59174  0.11672  3.49682     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     23   2.95026  3.59174  0.11672  3.49682     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     24   3.43763  0.12967  3.48690  2.83229     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     25   0.14138  3.38419  2.80447  3.28622     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     26   3.09257  2.59766  3.14057  0.17804     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     27   2.95026  3.59174  0.11672  3.49682     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     28   3.43763  0.12967  3.48690  2.83229     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     29   3.09257  2.59766  3.14057  0.17804     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     30   3.09257  2.59766  3.14057  0.17804     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     31   2.95026  3.59174  0.11672  3.49682     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     32   3.09257  2.59766  3.14057  0.17804     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     33   3.09257  2.59766  3.14057  0.17804     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     34   3.09257  2.59766  3.14057  0.17804     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     35   3.43763  0.12967  3.48690  2.83229     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     36   0.14138  3.38419  2.80447  3.28622     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     37   2.95026  3.59174  0.11672  3.49682     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     38   3.09257  2.59766  3.14057  0.17804     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     39   2.95026  3.59174  0.11672  3.49682     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     40   3.09257  2.59766  3.14057  0.17804     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     41   3.43763  0.12967  3.48690  2.83229     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     42   3.09257  2.59766  3.14057  0.17804     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     43   3.43763  0.12967  3.48690  2.83229     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     44   3.09257  2.59766  3.14057  0.17804     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     45   3.09257  2.59766  3.14057  0.17804     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01857  3.99544        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_eightc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:49:01 2012
+NSEQ  5
+EFFN  3.686523
+CKSUM 4049282212
+STATS LOCAL MSV       -7.6145  0.71933
+STATS LOCAL VITERBI   -7.6391  0.71933
+STATS LOCAL FORWARD   -3.8726  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.75248  1.41803  1.36097  1.11458
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  0.00000        *
+      1   0.12822  3.48998  2.87277  3.40223      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+      2   3.55903  0.11614  3.60298  2.91981      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+      3   0.12822  3.48998  2.87277  3.40223      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+      4   3.55903  0.11614  3.60298  2.91981      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+      5   3.55903  0.11614  3.60298  2.91981      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+      6   3.02261  3.69787  0.10579  3.61425      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+      7   3.02261  3.69787  0.10579  3.61425      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+      8   0.12822  3.48998  2.87277  3.40223      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+      9   3.02261  3.69787  0.10579  3.61425      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     10   0.63103  2.61772  1.16807  2.47669     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     11   3.02261  3.69787  0.10579  3.61425     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     12   3.20077  2.66632  3.24458  0.16161     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     13   1.57289  1.57364  2.19918  0.74577     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     14   3.55903  0.11614  3.60298  2.91981     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     15   3.20077  2.66632  3.24458  0.16161     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     16   3.55903  0.11614  3.60298  2.91981     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     17   2.76133  1.72287  2.82248  0.35842     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     18   3.55903  0.11614  3.60298  2.91981     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     19   3.20077  2.66632  3.24458  0.16161     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     20   3.20077  2.66632  3.24458  0.16161     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     21   3.55903  0.11614  3.60298  2.91981     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     22   3.02261  3.69787  0.10579  3.61425     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     23   3.02261  3.69787  0.10579  3.61425     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     24   3.20077  2.66632  3.24458  0.16161     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     25   0.12822  3.48998  2.87277  3.40223     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     26   3.20077  2.66632  3.24458  0.16161     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     27   3.02261  3.69787  0.10579  3.61425     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     28   3.55903  0.11614  3.60298  2.91981     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     29   3.20077  2.66632  3.24458  0.16161     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     30   3.20077  2.66632  3.24458  0.16161     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     31   3.55903  0.11614  3.60298  2.91981     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     32   3.20077  2.66632  3.24458  0.16161     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     33   3.20077  2.66632  3.24458  0.16161     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     34   3.20077  2.66632  3.24458  0.16161     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     35   3.55903  0.11614  3.60298  2.91981     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     36   0.12822  3.48998  2.87277  3.40223     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     37   3.02261  3.69787  0.10579  3.61425     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     38   3.20077  2.66632  3.24458  0.16161     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     39   3.02261  3.69787  0.10579  3.61425     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     40   3.20077  2.66632  3.24458  0.16161     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     41   3.02261  3.69787  0.10579  3.61425     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     42   3.20077  2.66632  3.24458  0.16161     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     43   3.02261  3.69787  0.10579  3.61425     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     44   0.12822  3.48998  2.87277  3.40223     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07525  4.07525  1.46634  0.26236  1.09861  0.40547
+     45   3.20077  2.66632  3.24458  0.16161     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01743  4.05812        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_eightd_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:49:07 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1872219876
+STATS LOCAL MSV       -7.3853  0.72989
+STATS LOCAL VITERBI   -8.4090  0.72989
+STATS LOCAL FORWARD   -3.4944  0.72989
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71692  1.44276  1.18984  1.27355
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   1.88179  1.10717  1.04597  1.79675     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.15554  1.00938  2.23102  0.88601     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.15554  1.00938  2.23102  0.88601     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_elevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:49:27 2012
+NSEQ  5
+EFFN  3.393555
+CKSUM 1575714051
+STATS LOCAL MSV       -7.4839  0.71934
+STATS LOCAL VITERBI   -7.6990  0.71934
+STATS LOCAL FORWARD   -4.2620  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55028  1.30282  1.33321  1.37666
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  0.00000        *
+      1   2.68973  1.71652  2.75247  0.37304      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      2   2.96311  3.61046  0.11471  3.51750      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      3   3.45893  0.12717  3.50729  2.84776      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      4   3.45893  0.12717  3.50729  2.84776      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      5   3.45893  0.12717  3.50729  2.84776      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      6   3.11130  2.60957  3.15859  0.17506      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      7   3.11130  2.60957  3.15859  0.17506      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      8   2.96311  3.61046  0.11471  3.51750      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      9   2.96311  3.61046  0.11471  3.51750      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     10   2.96311  3.61046  0.11471  3.51750     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     11   3.45893  0.12717  3.50729  2.84776     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     12   3.45893  0.12717  3.50729  2.84776     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     13   0.13897  3.40269  2.81647  3.30648     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     14   3.45893  0.12717  3.50729  2.84776     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     15   3.11130  2.60957  3.15859  0.17506     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     16   3.45893  0.12717  3.50729  2.84776     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     17   3.45893  0.12717  3.50729  2.84776     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     18   3.45893  0.12717  3.50729  2.84776     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     19   0.13897  3.40269  2.81647  3.30648     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     20   0.13897  3.40269  2.81647  3.30648     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     21   3.11130  2.60957  3.15859  0.17506     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     22   2.96311  3.61046  0.11471  3.51750     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     23   2.96311  3.61046  0.11471  3.51750     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     24   3.11130  2.60957  3.15859  0.17506     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     25   2.37392  1.92307  0.39398  2.44920     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     26   3.11130  2.60957  3.15859  0.17506     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     27   2.96311  3.61046  0.11471  3.51750     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     28   3.45893  0.12717  3.50729  2.84776     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     29   3.11130  2.60957  3.15859  0.17506     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     30   2.96311  3.61046  0.11471  3.51750     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     31   3.45893  0.12717  3.50729  2.84776     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     32   0.13897  3.40269  2.81647  3.30648     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     33   3.11130  2.60957  3.15859  0.17506     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     34   3.11130  2.60957  3.15859  0.17506     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     35   3.11130  2.60957  3.15859  0.17506     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     36   2.96311  3.61046  0.11471  3.51750     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     37   0.13897  3.40269  2.81647  3.30648     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     38   0.13897  3.40269  2.81647  3.30648     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     39   0.13897  3.40269  2.81647  3.30648     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     40   3.45893  0.12717  3.50729  2.84776     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     41   0.13897  3.40269  2.81647  3.30648     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     42   2.96311  3.61046  0.11471  3.51750     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     43   0.13897  3.40269  2.81647  3.30648     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     44   3.11130  2.60957  3.15859  0.17506     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     45   2.96311  3.61046  0.11471  3.51750     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01837  4.00616        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_elevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:49:36 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1545265678
+STATS LOCAL MSV       -7.4771  0.72838
+STATS LOCAL VITERBI   -8.1550  0.72838
+STATS LOCAL FORWARD   -3.6556  0.72838
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.43027  1.45972  1.24052  1.43038
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.57915  2.25909  2.64442  0.28946     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.92825  2.28391  0.95698  2.13014     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   0.23862  2.84929  2.43386  2.70756     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.81865  0.23582  2.88868  2.35662     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_fifteena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:54:25 2012
+NSEQ  25
+EFFN  3.335571
+CKSUM 500672324
+STATS LOCAL MSV       -7.9016  0.71932
+STATS LOCAL VITERBI   -7.7396  0.71932
+STATS LOCAL FORWARD   -4.0992  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72722  1.31020  1.32957  1.24527
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  0.00000        *
+      1   3.09277  2.59779  3.14076  0.17801      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+      2   2.95040  3.59193  0.11670  3.49704      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+      3   2.95040  3.59193  0.11670  3.49704      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+      4   3.43785  0.12964  3.48711  2.83245      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+      5   2.95040  3.59193  0.11670  3.49704      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+      6   3.43785  0.12964  3.48711  2.83245      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+      7   3.09277  2.59779  3.14076  0.17801      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+      8   2.54795  2.32143  0.27713  2.72309      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+      9   3.09277  2.59779  3.14076  0.17801      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     10   3.09277  2.59779  3.14076  0.17801     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     11   2.95040  3.59193  0.11670  3.49704     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     12   2.95040  3.59193  0.11670  3.49704     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     13   2.95040  3.59193  0.11670  3.49704     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     14   0.14135  3.38438  2.80460  3.28643     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     15   3.43785  0.12964  3.48711  2.83245     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     16   3.09277  2.59779  3.14076  0.17801     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     17   0.14135  3.38438  2.80460  3.28643     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     18   3.43785  0.12964  3.48711  2.83245     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     19   3.43785  0.12964  3.48711  2.83245     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     20   3.43785  0.12964  3.48711  2.83245     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     21   0.14135  3.38438  2.80460  3.28643     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     22   0.14135  3.38438  2.80460  3.28643     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     23   3.43785  0.12964  3.48711  2.83245     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     24   0.14135  3.38438  2.80460  3.28643     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     25   2.95040  3.59193  0.11670  3.49704     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     26   3.43785  0.12964  3.48711  2.83245     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     27   0.14135  3.38438  2.80460  3.28643     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     28   3.43785  0.12964  3.48711  2.83245     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     29   2.95040  3.59193  0.11670  3.49704     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     30   3.09277  2.59779  3.14076  0.17801     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     31   3.43785  0.12964  3.48711  2.83245     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     32   3.09277  2.59779  3.14076  0.17801     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     33   2.95040  3.59193  0.11670  3.49704     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     34   3.09277  2.59779  3.14076  0.17801     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     35   3.09277  2.59779  3.14076  0.17801     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     36   3.09277  2.59779  3.14076  0.17801     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     37   3.43785  0.12964  3.48711  2.83245     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     38   0.14135  3.38438  2.80460  3.28643     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     39   2.95040  3.59193  0.11670  3.49704     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     40   3.09277  2.59779  3.14076  0.17801     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     41   2.95040  3.59193  0.11670  3.49704     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     42   3.09277  2.59779  3.14076  0.17801     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     43   3.43785  0.12964  3.48711  2.83245     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     44   3.09277  2.59779  3.14076  0.17801     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01378  4.01378  1.46634  0.26236  1.09861  0.40547
+     45   3.09277  2.59779  3.14076  0.17801     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01857  3.99555        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_fifteenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:54:32 2012
+NSEQ  16
+EFFN  3.605469
+CKSUM 2100785171
+STATS LOCAL MSV       -7.3453  0.71933
+STATS LOCAL VITERBI   -7.7419  0.71933
+STATS LOCAL FORWARD   -4.2360  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.83616  1.45443  1.24425  1.14294
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  0.00000        *
+      1   3.17670  2.65106  3.22145  0.16511      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      2   3.00689  3.67468  0.10808  3.58855      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      3   3.00689  3.67468  0.10808  3.58855      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      4   3.53238  0.11897  3.57752  2.90072      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      5   3.00689  3.67468  0.10808  3.58855      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      6   3.53238  0.11897  3.57752  2.90072      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      7   3.17670  2.65106  3.22145  0.16511      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      8   3.00689  3.67468  0.10808  3.58855      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      9   3.17670  2.65106  3.22145  0.16511      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     10   3.17670  2.65106  3.22145  0.16511     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     11   3.00689  3.67468  0.10808  3.58855     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     12   3.00689  3.67468  0.10808  3.58855     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     13   3.00689  3.67468  0.10808  3.58855     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     14   0.13100  3.46667  2.85777  3.37664     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     15   3.17670  2.65106  3.22145  0.16511     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     16   3.17670  2.65106  3.22145  0.16511     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     17   0.13100  3.46667  2.85777  3.37664     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     18   2.46082  0.82174  2.53269  0.92754     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     19   3.53238  0.11897  3.57752  2.90072     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     20   2.46082  0.82174  2.53269  0.92754     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     21   3.00689  3.67468  0.10808  3.58855     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     22   0.24265  3.10343  2.11836  2.98922     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     23   3.53238  0.11897  3.57752  2.90072     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     24   0.13100  3.46667  2.85777  3.37664     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     25   3.00689  3.67468  0.10808  3.58855     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     26   3.53238  0.11897  3.57752  2.90072     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     27   0.13100  3.46667  2.85777  3.37664     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     28   3.53238  0.11897  3.57752  2.90072     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     29   3.00689  3.67468  0.10808  3.58855     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     30   3.17670  2.65106  3.22145  0.16511     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     31   3.53238  0.11897  3.57752  2.90072     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     32   3.17670  2.65106  3.22145  0.16511     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     33   3.00689  3.67468  0.10808  3.58855     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     34   3.17670  2.65106  3.22145  0.16511     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     35   3.17670  2.65106  3.22145  0.16511     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     36   3.17670  2.65106  3.22145  0.16511     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     37   3.53238  0.11897  3.57752  2.90072     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     38   0.13100  3.46667  2.85777  3.37664     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     39   3.00689  3.67468  0.10808  3.58855     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     40   3.17670  2.65106  3.22145  0.16511     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     41   3.00689  3.67468  0.10808  3.58855     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     42   3.17670  2.65106  3.22145  0.16511     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     43   3.53238  0.11897  3.57752  2.90072     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     44   3.17670  2.65106  3.22145  0.16511     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     45   3.17670  2.65106  3.22145  0.16511     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01768  4.04401        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_fifteenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:54:38 2012
+NSEQ  6
+EFFN  3.237305
+CKSUM 442242702
+STATS LOCAL MSV       -8.0313  0.71932
+STATS LOCAL VITERBI   -7.8597  0.71932
+STATS LOCAL FORWARD   -3.7770  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.05939  1.25473  1.20217  1.24906
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  0.00000        *
+      1   3.06071  2.57738  3.10992  0.18324      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      2   2.92809  3.55954  0.12029  3.46131      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      3   2.92809  3.55954  0.12029  3.46131      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      4   3.40113  0.13409  3.45193  2.80566      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      5   2.92809  3.55954  0.12029  3.46131      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      6   3.40113  0.13409  3.45193  2.80566      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      7   3.40113  0.13409  3.45193  2.80566      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      8   2.92809  3.55954  0.12029  3.46131      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      9   3.40113  0.13409  3.45193  2.80566      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     10   3.06071  2.57738  3.10992  0.18324     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     11   2.92809  3.55954  0.12029  3.46131     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     12   2.92809  3.55954  0.12029  3.46131     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     13   2.92809  3.55954  0.12029  3.46131     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     14   0.14561  3.35254  2.78388  3.25159     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     15   3.06071  2.57738  3.10992  0.18324     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     16   3.06071  2.57738  3.10992  0.18324     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     17   3.06071  2.57738  3.10992  0.18324     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     18   3.40113  0.13409  3.45193  2.80566     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     19   3.40113  0.13409  3.45193  2.80566     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     20   3.40113  0.13409  3.45193  2.80566     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     21   2.92809  3.55954  0.12029  3.46131     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     22   2.92809  3.55954  0.12029  3.46131     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     23   3.40113  0.13409  3.45193  2.80566     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     24   0.14561  3.35254  2.78388  3.25159     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     25   2.92809  3.55954  0.12029  3.46131     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     26   3.40113  0.13409  3.45193  2.80566     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     27   0.14561  3.35254  2.78388  3.25159     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     28   3.40113  0.13409  3.45193  2.80566     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     29   2.92809  3.55954  0.12029  3.46131     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     30   3.06071  2.57738  3.10992  0.18324     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     31   3.40113  0.13409  3.45193  2.80566     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     32   3.06071  2.57738  3.10992  0.18324     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     33   2.92809  3.55954  0.12029  3.46131     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     34   3.06071  2.57738  3.10992  0.18324     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     35   3.06071  2.57738  3.10992  0.18324     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     36   3.06071  2.57738  3.10992  0.18324     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     37   3.40113  0.13409  3.45193  2.80566     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     38   0.14561  3.35254  2.78388  3.25159     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     39   2.92809  3.55954  0.12029  3.46131     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     40   3.06071  2.57738  3.10992  0.18324     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     41   2.92809  3.55954  0.12029  3.46131     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     42   3.06071  2.57738  3.10992  0.18324     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     43   3.40113  0.13409  3.45193  2.80566     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     44   3.06071  2.57738  3.10992  0.18324     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     45   3.06071  2.57738  3.10992  0.18324     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01891  3.97731        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_fifteend_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:54:44 2012
+NSEQ  7
+EFFN  3.298340
+CKSUM 2869266091
+STATS LOCAL MSV       -8.1459  0.71931
+STATS LOCAL VITERBI   -7.9055  0.71931
+STATS LOCAL FORWARD   -3.8325  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.06625  1.24709  1.32281  1.14065
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  0.00000        *
+      1   2.94206  3.57981  0.11803  3.48366      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      2   2.94206  3.57981  0.11803  3.48366      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      3   3.42409  0.13129  3.47393  2.82243      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      4   2.94206  3.57981  0.11803  3.48366      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      5   3.42409  0.13129  3.47393  2.82243      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      6   3.08072  2.59012  3.12917  0.17995      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      7   3.08072  2.59012  3.12917  0.17995      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      8   3.42409  0.13129  3.47393  2.82243      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      9   3.08072  2.59012  3.12917  0.17995      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     10   2.94206  3.57981  0.11803  3.48366     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     11   2.94206  3.57981  0.11803  3.48366     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     12   2.94206  3.57981  0.11803  3.48366     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     13   0.14293  3.37244  2.79684  3.27336     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     14   3.08072  2.59012  3.12917  0.17995     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     15   3.08072  2.59012  3.12917  0.17995     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     16   3.08072  2.59012  3.12917  0.17995     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     17   3.08072  2.59012  3.12917  0.17995     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     18   3.42409  0.13129  3.47393  2.82243     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     19   3.42409  0.13129  3.47393  2.82243     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     20   3.42409  0.13129  3.47393  2.82243     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     21   3.42409  0.13129  3.47393  2.82243     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     22   2.94206  3.57981  0.11803  3.48366     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     23   3.08072  2.59012  3.12917  0.17995     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     24   0.14293  3.37244  2.79684  3.27336     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     25   2.94206  3.57981  0.11803  3.48366     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     26   3.42409  0.13129  3.47393  2.82243     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     27   0.14293  3.37244  2.79684  3.27336     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     28   3.42409  0.13129  3.47393  2.82243     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     29   2.94206  3.57981  0.11803  3.48366     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     30   3.08072  2.59012  3.12917  0.17995     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     31   3.42409  0.13129  3.47393  2.82243     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     32   3.08072  2.59012  3.12917  0.17995     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     33   2.94206  3.57981  0.11803  3.48366     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     34   3.08072  2.59012  3.12917  0.17995     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     35   3.08072  2.59012  3.12917  0.17995     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     36   3.08072  2.59012  3.12917  0.17995     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     37   3.42409  0.13129  3.47393  2.82243     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     38   0.14293  3.37244  2.79684  3.27336     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     39   2.94206  3.57981  0.11803  3.48366     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     40   3.08072  2.59012  3.12917  0.17995     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     41   2.94206  3.57981  0.11803  3.48366     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     42   3.08072  2.59012  3.12917  0.17995     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     43   3.42409  0.13129  3.47393  2.82243     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     44   3.08072  2.59012  3.12917  0.17995     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     45   3.42409  0.13129  3.47393  2.82243     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01870  3.98868        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_fifteene_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:54:49 2012
+NSEQ  14
+EFFN  3.612793
+CKSUM 3599068610
+STATS LOCAL MSV       -7.2495  0.71932
+STATS LOCAL VITERBI   -7.7818  0.71932
+STATS LOCAL FORWARD   -3.9403  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.01810  1.29360  1.24959  1.18356
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  0.00000        *
+      1   3.17890  2.65245  3.22356  0.16478      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+      2   3.00833  3.67681  0.10787  3.59090      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+      3   3.00833  3.67681  0.10787  3.59090      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+      4   3.53482  0.11871  3.57985  2.90247      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+      5   3.00833  3.67681  0.10787  3.59090      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+      6   3.53482  0.11871  3.57985  2.90247      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+      7   3.17890  2.65245  3.22356  0.16478      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+      8   3.00833  3.67681  0.10787  3.59090      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+      9   3.53482  0.11871  3.57985  2.90247      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     10   0.90681  1.49378  2.06689  1.40614     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     11   3.00833  3.67681  0.10787  3.59090     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     12   3.00833  3.67681  0.10787  3.59090     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     13   3.00833  3.67681  0.10787  3.59090     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     14   0.13074  3.46880  2.85915  3.37898     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     15   2.82437  1.87604  2.88303  0.31267     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     16   3.17890  2.65245  3.22356  0.16478     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     17   3.17890  2.65245  3.22356  0.16478     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     18   3.53482  0.11871  3.57985  2.90247     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     19   2.99789  0.26576  3.06012  1.99066     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     20   3.53482  0.11871  3.57985  2.90247     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     21   3.17890  2.65245  3.22356  0.16478     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     22   3.00833  3.67681  0.10787  3.59090     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     23   3.53482  0.11871  3.57985  2.90247     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     24   0.13074  3.46880  2.85915  3.37898     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     25   3.00833  3.67681  0.10787  3.59090     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     26   3.53482  0.11871  3.57985  2.90247     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     27   0.13074  3.46880  2.85915  3.37898     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     28   3.53482  0.11871  3.57985  2.90247     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     29   3.00833  3.67681  0.10787  3.59090     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     30   3.17890  2.65245  3.22356  0.16478     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     31   3.53482  0.11871  3.57985  2.90247     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     32   3.17890  2.65245  3.22356  0.16478     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     33   3.00833  3.67681  0.10787  3.59090     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     34   3.17890  2.65245  3.22356  0.16478     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     35   3.17890  2.65245  3.22356  0.16478     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     36   3.17890  2.65245  3.22356  0.16478     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     37   3.53482  0.11871  3.57985  2.90247     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     38   0.13074  3.46880  2.85915  3.37898     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     39   3.00833  3.67681  0.10787  3.59090     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     40   3.17890  2.65245  3.22356  0.16478     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     41   3.00833  3.67681  0.10787  3.59090     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     42   3.17890  2.65245  3.22356  0.16478     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     43   3.53482  0.11871  3.57985  2.90247     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     44   3.17890  2.65245  3.22356  0.16478     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     45   2.82437  1.87604  2.88303  0.31267     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01766  4.04529        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_fifteenf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:54:55 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 4191745197
+STATS LOCAL MSV       -8.0134  0.72148
+STATS LOCAL VITERBI   -7.9970  0.72148
+STATS LOCAL FORWARD   -3.9305  0.72148
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.88034  1.41850  1.31106  1.09109
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   0.15719  3.27118  2.73043  3.16274      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   1.30792  2.11152  2.18422  0.70118      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   0.15719  3.27118  2.73043  3.16274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.42752  1.34012  2.49742  0.56628     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   3.30705  0.14631  3.36166  2.73626     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.86982  3.47591  0.13017  3.36931     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.97980  2.52563  3.03204  0.19727     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   3.30705  0.14631  3.36166  2.73626     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   0.15719  3.27118  2.73043  3.16274     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.97980  2.52563  3.03204  0.19727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_fivea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:47:57 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 630474797
+STATS LOCAL MSV       -7.1031  0.72876
+STATS LOCAL VITERBI   -8.2897  0.72876
+STATS LOCAL FORWARD   -3.3234  0.72876
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.65817  1.49734  1.37580  1.09916
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.81865  0.23582  2.88868  2.35662     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_fiveb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:48:04 2012
+NSEQ  9
+EFFN  3.361816
+CKSUM 2438455031
+STATS LOCAL MSV       -8.0408  0.71932
+STATS LOCAL VITERBI   -7.6304  0.71932
+STATS LOCAL FORWARD   -4.1626  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73808  1.37131  1.38409  1.14001
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  0.00000        *
+      1   3.44745  0.12851  3.49630  2.83942      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+      2   0.24046  3.06994  2.16140  2.95373      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+      3   3.44745  0.12851  3.49630  2.83942      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+      4   3.10119  2.60314  3.14886  0.17666      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+      5   3.44745  0.12851  3.49630  2.83942      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+      6   3.10119  2.60314  3.14886  0.17666      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+      7   3.10119  2.60314  3.14886  0.17666      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+      8   2.95619  3.60037  0.11579  3.50635      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+      9   2.95619  3.60037  0.11579  3.50635      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     10   2.95619  3.60037  0.11579  3.50635     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     11   0.14026  3.39271  2.81000  3.29556     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     12   3.44745  0.12851  3.49630  2.83942     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     13   0.14026  3.39271  2.81000  3.29556     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     14   3.44745  0.12851  3.49630  2.83942     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     15   2.95619  3.60037  0.11579  3.50635     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     16   3.44745  0.12851  3.49630  2.83942     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     17   3.44745  0.12851  3.49630  2.83942     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     18   3.10119  2.60314  3.14886  0.17666     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     19   2.95619  3.60037  0.11579  3.50635     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     20   0.14026  3.39271  2.81000  3.29556     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     21   2.95619  3.60037  0.11579  3.50635     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     22   0.14026  3.39271  2.81000  3.29556     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     23   2.95619  3.60037  0.11579  3.50635     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     24   3.10119  2.60314  3.14886  0.17666     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     25   0.14026  3.39271  2.81000  3.29556     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     26   3.10119  2.60314  3.14886  0.17666     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     27   2.95619  3.60037  0.11579  3.50635     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     28   3.10119  2.60314  3.14886  0.17666     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     29   3.44745  0.12851  3.49630  2.83942     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     30   3.10119  2.60314  3.14886  0.17666     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     31   2.95619  3.60037  0.11579  3.50635     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     32   3.44745  0.12851  3.49630  2.83942     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     33   3.10119  2.60314  3.14886  0.17666     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     34   3.10119  2.60314  3.14886  0.17666     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     35   3.44745  0.12851  3.49630  2.83942     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     36   0.14026  3.39271  2.81000  3.29556     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     37   2.95619  3.60037  0.11579  3.50635     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     38   3.10119  2.60314  3.14886  0.17666     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     39   2.95619  3.60037  0.11579  3.50635     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     40   3.44745  0.12851  3.49630  2.83942     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     41   3.10119  2.60314  3.14886  0.17666     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     42   3.10119  2.60314  3.14886  0.17666     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     43   3.10119  2.60314  3.14886  0.17666     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     44   3.10119  2.60314  3.14886  0.17666     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03662  4.01851  4.01851  1.46634  0.26236  1.09861  0.40547
+     45   3.10119  2.60314  3.14886  0.17666     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01848  4.00037        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_foura_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:47:28 2012
+NSEQ  8
+EFFN  3.347656
+CKSUM 1565564952
+STATS LOCAL MSV       -8.1688  0.71931
+STATS LOCAL VITERBI   -7.7321  0.71931
+STATS LOCAL FORWARD   -4.0847  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72680  1.38541  1.31835  1.18958
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  0.00000        *
+      1   3.44228  0.12912  3.49135  2.83567      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      2   2.95307  3.59583  0.11628  3.50134      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      3   2.96273  0.26402  3.02577  2.02612      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      4   3.09665  2.60026  3.14450  0.17739      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      5   3.44228  0.12912  3.49135  2.83567      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      6   3.09665  2.60026  3.14450  0.17739      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      7   3.09665  2.60026  3.14450  0.17739      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      8   2.95307  3.59583  0.11628  3.50134      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      9   2.95307  3.59583  0.11628  3.50134      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     10   2.95307  3.59583  0.11628  3.50134     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     11   0.14085  3.38823  2.80709  3.29064     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     12   3.09665  2.60026  3.14450  0.17739     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     13   0.14085  3.38823  2.80709  3.29064     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     14   3.09665  2.60026  3.14450  0.17739     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     15   2.95307  3.59583  0.11628  3.50134     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     16   3.44228  0.12912  3.49135  2.83567     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     17   3.44228  0.12912  3.49135  2.83567     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     18   3.09665  2.60026  3.14450  0.17739     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     19   2.95307  3.59583  0.11628  3.50134     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     20   0.14085  3.38823  2.80709  3.29064     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     21   2.95307  3.59583  0.11628  3.50134     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     22   0.14085  3.38823  2.80709  3.29064     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     23   2.95307  3.59583  0.11628  3.50134     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     24   3.44228  0.12912  3.49135  2.83567     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     25   0.14085  3.38823  2.80709  3.29064     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     26   3.09665  2.60026  3.14450  0.17739     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     27   2.95307  3.59583  0.11628  3.50134     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     28   3.09665  2.60026  3.14450  0.17739     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     29   3.44228  0.12912  3.49135  2.83567     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     30   3.09665  2.60026  3.14450  0.17739     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     31   2.95307  3.59583  0.11628  3.50134     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     32   3.44228  0.12912  3.49135  2.83567     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     33   3.09665  2.60026  3.14450  0.17739     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     34   3.09665  2.60026  3.14450  0.17739     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     35   3.44228  0.12912  3.49135  2.83567     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     36   0.14085  3.38823  2.80709  3.29064     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     37   2.95307  3.59583  0.11628  3.50134     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     38   3.09665  2.60026  3.14450  0.17739     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     39   2.95307  3.59583  0.11628  3.50134     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     40   3.44228  0.12912  3.49135  2.83567     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     41   3.09665  2.60026  3.14450  0.17739     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     42   3.09665  2.60026  3.14450  0.17739     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     43   3.44228  0.12912  3.49135  2.83567     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     44   3.09665  2.60026  3.14450  0.17739     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     45   0.14085  3.38823  2.80709  3.29064     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01853  3.99777        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_fourb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:47:35 2012
+NSEQ  14
+EFFN  3.325684
+CKSUM 2052394201
+STATS LOCAL MSV       -8.1103  0.71933
+STATS LOCAL VITERBI   -7.7143  0.71933
+STATS LOCAL FORWARD   -3.9821  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63564  1.44468  1.38366  1.14353
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  0.00000        *
+      1   2.94820  3.58873  0.11705  3.49350      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      2   3.43422  0.13008  3.48363  2.82980      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      3   0.14177  3.38122  2.80255  3.28298      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      4   3.43422  0.13008  3.48363  2.82980      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      5   3.08958  2.59576  3.13770  0.17852      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      6   3.43422  0.13008  3.48363  2.82980      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      7   3.08958  2.59576  3.13770  0.17852      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      8   3.08958  2.59576  3.13770  0.17852      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      9   2.94820  3.58873  0.11705  3.49350      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     10   2.94820  3.58873  0.11705  3.49350     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     11   2.94820  3.58873  0.11705  3.49350     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     12   0.14177  3.38122  2.80255  3.28298     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     13   3.08958  2.59576  3.13770  0.17852     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     14   3.08958  2.59576  3.13770  0.17852     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     15   3.08958  2.59576  3.13770  0.17852     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     16   3.43422  0.13008  3.48363  2.82980     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     17   3.43422  0.13008  3.48363  2.82980     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     18   3.08958  2.59576  3.13770  0.17852     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     19   2.94820  3.58873  0.11705  3.49350     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     20   0.14177  3.38122  2.80255  3.28298     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     21   2.94820  3.58873  0.11705  3.49350     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     22   0.14177  3.38122  2.80255  3.28298     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     23   2.94820  3.58873  0.11705  3.49350     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     24   3.08958  2.59576  3.13770  0.17852     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     25   0.14177  3.38122  2.80255  3.28298     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     26   3.08958  2.59576  3.13770  0.17852     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     27   2.94820  3.58873  0.11705  3.49350     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     28   3.08958  2.59576  3.13770  0.17852     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     29   3.43422  0.13008  3.48363  2.82980     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     30   3.08958  2.59576  3.13770  0.17852     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     31   2.94820  3.58873  0.11705  3.49350     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     32   3.43422  0.13008  3.48363  2.82980     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     33   3.08958  2.59576  3.13770  0.17852     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     34   3.08958  2.59576  3.13770  0.17852     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     35   3.43422  0.13008  3.48363  2.82980     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     36   0.14177  3.38122  2.80255  3.28298     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     37   2.94820  3.58873  0.11705  3.49350     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     38   3.08958  2.59576  3.13770  0.17852     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     39   2.94820  3.58873  0.11705  3.49350     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     40   3.43422  0.13008  3.48363  2.82980     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     41   3.08958  2.59576  3.13770  0.17852     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     42   3.08958  2.59576  3.13770  0.17852     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     43   0.14177  3.38122  2.80255  3.28298     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     44   0.14177  3.38122  2.80255  3.28298     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     45   3.43422  0.13008  3.48363  2.82980     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01860  3.99373        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_fourc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:47:41 2012
+NSEQ  7
+EFFN  3.612793
+CKSUM 277781406
+STATS LOCAL MSV       -7.4130  0.71933
+STATS LOCAL VITERBI   -7.7029  0.71933
+STATS LOCAL FORWARD   -3.9206  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.78948  1.40356  1.28233  1.17168
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  0.00000        *
+      1   3.00833  3.67681  0.10787  3.59090      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+      2   3.53482  0.11871  3.57985  2.90247      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+      3   0.13074  3.46880  2.85915  3.37898      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+      4   3.53482  0.11871  3.57985  2.90247      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+      5   2.83792  1.90216  2.89608  0.30521      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+      6   3.53482  0.11871  3.57985  2.90247      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+      7   3.17890  2.65245  3.22356  0.16478      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+      8   2.46560  0.79961  2.53748  0.95069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+      9   3.00833  3.67681  0.10787  3.59090      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     10   3.00833  3.67681  0.10787  3.59090     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     11   3.00833  3.67681  0.10787  3.59090     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     12   1.03144  2.58673  0.73117  2.44303     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     13   3.17890  2.65245  3.22356  0.16478     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     14   3.17890  2.65245  3.22356  0.16478     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     15   3.17890  2.65245  3.22356  0.16478     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     16   3.53482  0.11871  3.57985  2.90247     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     17   3.53482  0.11871  3.57985  2.90247     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     18   3.17890  2.65245  3.22356  0.16478     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     19   3.00833  3.67681  0.10787  3.59090     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     20   0.13074  3.46880  2.85915  3.37898     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     21   3.00833  3.67681  0.10787  3.59090     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     22   0.13074  3.46880  2.85915  3.37898     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     23   3.00833  3.67681  0.10787  3.59090     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     24   3.17890  2.65245  3.22356  0.16478     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     25   0.13074  3.46880  2.85915  3.37898     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     26   3.17890  2.65245  3.22356  0.16478     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     27   3.00833  3.67681  0.10787  3.59090     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     28   3.17890  2.65245  3.22356  0.16478     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     29   3.53482  0.11871  3.57985  2.90247     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     30   3.17890  2.65245  3.22356  0.16478     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     31   3.00833  3.67681  0.10787  3.59090     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     32   3.53482  0.11871  3.57985  2.90247     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     33   3.17890  2.65245  3.22356  0.16478     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     34   3.17890  2.65245  3.22356  0.16478     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     35   3.53482  0.11871  3.57985  2.90247     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     36   0.13074  3.46880  2.85915  3.37898     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     37   3.00833  3.67681  0.10787  3.59090     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     38   3.17890  2.65245  3.22356  0.16478     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     39   3.00833  3.67681  0.10787  3.59090     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     40   3.53482  0.11871  3.57985  2.90247     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     41   3.17890  2.65245  3.22356  0.16478     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     42   3.17890  2.65245  3.22356  0.16478     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     43   0.13074  3.46880  2.85915  3.37898     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     44   3.00833  3.67681  0.10787  3.59090     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06265  4.06265  1.46634  0.26236  1.09861  0.40547
+     45   3.53482  0.11871  3.57985  2.90247     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01766  4.04529        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_fourd_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:47:47 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 945311865
+STATS LOCAL MSV       -8.1412  0.72023
+STATS LOCAL VITERBI   -7.6990  0.72023
+STATS LOCAL FORWARD   -3.8381  0.72023
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81287  1.32079  1.20046  1.31365
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.86982  3.47591  0.13017  3.36931     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   3.30705  0.14631  3.36166  2.73626     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.97980  2.52563  3.03204  0.19727     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.97980  2.52563  3.03204  0.19727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.86982  3.47591  0.13017  3.36931     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_fourteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:54:14 2012
+NSEQ  19
+EFFN  3.975342
+CKSUM 4093622679
+STATS LOCAL MSV       -7.2188  0.71932
+STATS LOCAL VITERBI   -7.4754  0.71932
+STATS LOCAL FORWARD   -4.0594  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.44172  1.86242  1.47496  0.96917
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  0.00000        *
+      1   0.11939  3.56822  2.92300  3.48820      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+      2   0.11939  3.56822  2.92300  3.48820      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+      3   3.07459  3.77484  0.09858  3.69966      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+      4   3.07459  3.77484  0.09858  3.69966      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+      5   3.28256  2.71819  3.32315  0.15032      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+      6   0.11939  3.56822  2.92300  3.48820      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+      7   3.64801  0.10726  3.68789  2.98308      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+      8   3.28256  2.71819  3.32315  0.15032      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+      9   3.28256  2.71819  3.32315  0.15032      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     10   3.64801  0.10726  3.68789  2.98308     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     11   3.28256  2.71819  3.32315  0.15032     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     12   0.11939  3.56822  2.92300  3.48820     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     13   0.11939  3.56822  2.92300  3.48820     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     14   0.11939  3.56822  2.92300  3.48820     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     15   3.28256  2.71819  3.32315  0.15032     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     16   3.28256  2.71819  3.32315  0.15032     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     17   1.36120  0.63933  2.33750  2.12501     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     18   3.28256  2.71819  3.32315  0.15032     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     19   3.07459  3.77484  0.09858  3.69966     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     20   3.07459  3.77484  0.09858  3.69966     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     21   3.07459  3.77484  0.09858  3.69966     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     22   0.11939  3.56822  2.92300  3.48820     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     23   3.07459  3.77484  0.09858  3.69966     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     24   3.28256  2.71819  3.32315  0.15032     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     25   0.11939  3.56822  2.92300  3.48820     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     26   3.28256  2.71819  3.32315  0.15032     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     27   3.07459  3.77484  0.09858  3.69966     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     28   3.28256  2.71819  3.32315  0.15032     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     29   3.28256  2.71819  3.32315  0.15032     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     30   3.28256  2.71819  3.32315  0.15032     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     31   0.11939  3.56822  2.92300  3.48820     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     32   2.20880  2.30847  0.72114  1.18890     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     33   3.28256  2.71819  3.32315  0.15032     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     34   3.28256  2.71819  3.32315  0.15032     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     35   3.64801  0.10726  3.68789  2.98308     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     36   0.11939  3.56822  2.92300  3.48820     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     37   3.07459  3.77484  0.09858  3.69966     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     38   3.28256  2.71819  3.32315  0.15032     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     39   3.07459  3.77484  0.09858  3.69966     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     40   3.64801  0.10726  3.68789  2.98308     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     41   3.28256  2.71819  3.32315  0.15032     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     42   3.28256  2.71819  3.32315  0.15032     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     43   2.57102  2.40862  1.92099  0.37522     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     44   3.28256  2.71819  3.32315  0.15032     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03292  4.12315  4.12315  1.46634  0.26236  1.09861  0.40547
+     45   2.86994  0.35159  2.93552  1.67865     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01660  4.10682        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:49:16 2012
+NSEQ  4
+EFFN  3.660156
+CKSUM 2693919103
+STATS LOCAL MSV       -7.6646  0.71933
+STATS LOCAL VITERBI   -7.7506  0.71933
+STATS LOCAL FORWARD   -4.2563  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.41247  1.34559  1.34393  1.44710
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  0.00000        *
+      1   3.01755  3.69041  0.10652  3.60597      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+      2   3.19300  2.66139  3.23711  0.16273      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+      3   0.12911  3.48247  2.86794  3.39398      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+      4   0.12911  3.48247  2.86794  3.39398      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+      5   3.55045  0.11705  3.59478  2.91367      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+      6   3.19300  2.66139  3.23711  0.16273      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+      7   0.12911  3.48247  2.86794  3.39398      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+      8   0.12911  3.48247  2.86794  3.39398      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+      9   3.55045  0.11705  3.59478  2.91367      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     10   3.01755  3.69041  0.10652  3.60597     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     11   3.55045  0.11705  3.59478  2.91367     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     12   2.46500  0.94717  2.53631  0.80297     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     13   3.01755  3.69041  0.10652  3.60597     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     14   3.01755  3.69041  0.10652  3.60597     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     15   3.55045  0.11705  3.59478  2.91367     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     16   0.12911  3.48247  2.86794  3.39398     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     17   3.55045  0.11705  3.59478  2.91367     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     18   0.12911  3.48247  2.86794  3.39398     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     19   0.12911  3.48247  2.86794  3.39398     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     20   3.55045  0.11705  3.59478  2.91367     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     21   3.55045  0.11705  3.59478  2.91367     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     22   0.84829  2.57052  0.89883  2.42686     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     23   3.01755  3.69041  0.10652  3.60597     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     24   3.55045  0.11705  3.59478  2.91367     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     25   0.12911  3.48247  2.86794  3.39398     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     26   3.19300  2.66139  3.23711  0.16273     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     27   3.01755  3.69041  0.10652  3.60597     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     28   3.19300  2.66139  3.23711  0.16273     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     29   3.19300  2.66139  3.23711  0.16273     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     30   3.19300  2.66139  3.23711  0.16273     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     31   3.01755  3.69041  0.10652  3.60597     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     32   3.01755  3.69041  0.10652  3.60597     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     33   3.19300  2.66139  3.23711  0.16273     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     34   3.19300  2.66139  3.23711  0.16273     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     35   3.55045  0.11705  3.59478  2.91367     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     36   0.12911  3.48247  2.86794  3.39398     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     37   3.01755  3.69041  0.10652  3.60597     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     38   3.19300  2.66139  3.23711  0.16273     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     39   3.01755  3.69041  0.10652  3.60597     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     40   3.19300  2.66139  3.23711  0.16273     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     41   3.01755  3.69041  0.10652  3.60597     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     42   3.55045  0.11705  3.59478  2.91367     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     43   1.00233  1.43748  2.06192  1.31588     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     44   3.55045  0.11705  3.59478  2.91367     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     45   0.12911  3.48247  2.86794  3.39398     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01751  4.05355        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_nineteena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:55:44 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1579425985
+STATS LOCAL MSV       -8.0867  0.72116
+STATS LOCAL VITERBI   -7.9812  0.72116
+STATS LOCAL FORWARD   -3.7009  0.72116
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.79232  1.40617  1.18456  1.26419
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.86982  3.47591  0.13017  3.36931      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.43440  0.61908  2.50724  1.22957     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   3.30705  0.14631  3.36166  2.73626     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.12334  2.11792  1.37287  0.67982     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.97980  2.52563  3.03204  0.19727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_nineteenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:55:50 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2871410458
+STATS LOCAL MSV       -8.0750  0.72053
+STATS LOCAL VITERBI   -7.9443  0.72053
+STATS LOCAL FORWARD   -3.7952  0.72053
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54304  1.52189  1.31521  1.20546
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.86982  3.47591  0.13017  3.36931      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   3.30705  0.14631  3.36166  2.73626     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.97980  2.52563  3.03204  0.19727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_onea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:42:30 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 634275971
+STATS LOCAL MSV       -7.4720  0.73173
+STATS LOCAL VITERBI   -8.2528  0.73173
+STATS LOCAL FORWARD   -3.4391  0.73173
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40721  1.72349  1.41702  1.09573
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   1.89532  1.96405  1.06955  1.00436     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.92825  2.28391  0.95698  2.13014     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.15554  1.00938  2.23102  0.88601     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.81865  0.23582  2.88868  2.35662     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   1.88179  1.10717  1.04597  1.79675     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_oneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:42:36 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 470675090
+STATS LOCAL MSV       -7.4696  0.73050
+STATS LOCAL VITERBI   -8.4860  0.73050
+STATS LOCAL FORWARD   -3.6496  0.73050
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40317  1.51763  1.41931  1.22734
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.15554  1.00938  2.23102  0.88601      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.81865  0.23582  2.88868  2.35662     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   1.03732  1.95876  1.96551  1.00928     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   1.01448  1.11006  1.95471  1.79419     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_onec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:42:41 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3218648575
+STATS LOCAL MSV       -7.4834  0.72855
+STATS LOCAL VITERBI   -8.3698  0.72855
+STATS LOCAL FORWARD   -3.5469  0.72855
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45349  1.57174  1.37327  1.18652
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_sevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:48:25 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1500803962
+STATS LOCAL MSV       -7.4752  0.72898
+STATS LOCAL VITERBI   -8.3128  0.72898
+STATS LOCAL FORWARD   -3.5618  0.72898
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.51945  1.36263  1.43442  1.24854
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.15554  1.00938  2.23102  0.88601     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_sevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:48:32 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3235530884
+STATS LOCAL MSV       -7.4473  0.72886
+STATS LOCAL VITERBI   -8.3269  0.72886
+STATS LOCAL FORWARD   -3.6806  0.72886
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.51904  1.26407  1.41546  1.36351
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   1.88179  1.10717  1.04597  1.79675     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_sevenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:48:38 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 677190326
+STATS LOCAL MSV       -7.4805  0.73144
+STATS LOCAL VITERBI   -8.3647  0.73144
+STATS LOCAL FORWARD   -3.3920  0.73144
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.49596  1.51275  1.43591  1.14645
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.15554  1.00938  2.23102  0.88601     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   1.01448  1.11006  1.95471  1.79419     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.92825  2.28391  0.95698  2.13014     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.81865  0.23582  2.88868  2.35662     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.92825  2.28391  0.95698  2.13014     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_seventeen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:55:31 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 252461474
+STATS LOCAL MSV       -7.9979  0.72109
+STATS LOCAL VITERBI   -7.8792  0.72109
+STATS LOCAL FORWARD   -3.7137  0.72109
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11444  1.67387  1.87820  1.10408
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   0.15719  3.27118  2.73043  3.16274      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   0.15719  3.27118  2.73043  3.16274      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   0.15719  3.27118  2.73043  3.16274     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   0.15719  3.27118  2.73043  3.16274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   3.30705  0.14631  3.36166  2.73626     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   0.15719  3.27118  2.73043  3.16274     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   3.30705  0.14631  3.36166  2.73626     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   0.15719  3.27118  2.73043  3.16274     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.97980  2.52563  3.03204  0.19727     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   3.30705  0.14631  3.36166  2.73626     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   0.15719  3.27118  2.73043  3.16274     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.97980  2.52563  3.03204  0.19727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:48:16 2012
+NSEQ  6
+EFFN  3.565430
+CKSUM 1641114563
+STATS LOCAL MSV       -7.2926  0.71932
+STATS LOCAL VITERBI   -7.7152  0.71932
+STATS LOCAL FORWARD   -3.9190  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71905  1.32555  1.24979  1.31474
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  0.00000        *
+      1   2.44789  0.93687  2.51948  0.81833      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+      2   0.13242  3.45492  2.85021  3.36375      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+      3   3.51892  0.12042  3.56466  2.89106      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+      4   3.16462  2.64340  3.20984  0.16690      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+      5   3.16462  2.64340  3.20984  0.16690      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+      6   3.16462  2.64340  3.20984  0.16690      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+      7   3.51892  0.12042  3.56466  2.89106      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+      8   2.99892  3.66295  0.10925  3.57556      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+      9   2.99892  3.66295  0.10925  3.57556      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     10   2.99892  3.66295  0.10925  3.57556     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     11   0.13242  3.45492  2.85021  3.36375     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     12   3.16462  2.64340  3.20984  0.16690     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     13   0.13242  3.45492  2.85021  3.36375     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     14   2.99892  3.66295  0.10925  3.57556     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     15   3.51892  0.12042  3.56466  2.89106     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     16   3.51892  0.12042  3.56466  2.89106     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     17   3.16462  2.64340  3.20984  0.16690     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     18   3.16462  2.64340  3.20984  0.16690     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     19   2.99892  3.66295  0.10925  3.57556     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     20   3.51892  0.12042  3.56466  2.89106     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     21   0.13242  3.45492  2.85021  3.36375     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     22   0.13242  3.45492  2.85021  3.36375     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     23   2.99892  3.66295  0.10925  3.57556     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     24   2.54831  1.34093  2.61616  0.53256     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     25   2.99892  3.66295  0.10925  3.57556     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     26   3.16462  2.64340  3.20984  0.16690     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     27   2.99892  3.66295  0.10925  3.57556     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     28   3.51892  0.12042  3.56466  2.89106     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     29   3.51892  0.12042  3.56466  2.89106     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     30   3.16462  2.64340  3.20984  0.16690     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     31   2.99892  3.66295  0.10925  3.57556     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     32   3.51892  0.12042  3.56466  2.89106     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     33   2.99892  3.66295  0.10925  3.57556     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     34   3.16462  2.64340  3.20984  0.16690     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     35   2.54831  1.34093  2.61616  0.53256     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     36   2.99892  3.66295  0.10925  3.57556     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     37   2.99892  3.66295  0.10925  3.57556     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     38   3.51892  0.12042  3.56466  2.89106     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     39   2.99892  3.66295  0.10925  3.57556     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     40   3.16462  2.64340  3.20984  0.16690     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     41   3.51892  0.12042  3.56466  2.89106     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     42   3.16462  2.64340  3.20984  0.16690     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     43   0.13242  3.45492  2.85021  3.36375     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     44   3.51892  0.12042  3.56466  2.89106     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05446  4.05446  1.46634  0.26236  1.09861  0.40547
+     45   0.13242  3.45492  2.85021  3.36375     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01781  4.03697        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_sixteena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:55:08 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3202956986
+STATS LOCAL MSV       -7.8599  0.72111
+STATS LOCAL VITERBI   -7.8497  0.72111
+STATS LOCAL FORWARD   -4.1451  0.72111
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.35816  1.44270  1.58441  1.19895
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   0.15719  3.27118  2.73043  3.16274      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   0.15719  3.27118  2.73043  3.16274      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.86982  3.47591  0.13017  3.36931      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   0.15719  3.27118  2.73043  3.16274     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   0.15719  3.27118  2.73043  3.16274     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   0.54133  2.56226  1.37841  2.42004     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_sixteenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:55:15 2012
+NSEQ  4
+EFFN  3.339844
+CKSUM 3480860732
+STATS LOCAL MSV       -8.0392  0.71933
+STATS LOCAL VITERBI   -7.6464  0.71933
+STATS LOCAL FORWARD   -4.2449  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40398  1.37647  1.61533  1.19373
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  0.00000        *
+      1   0.14117  3.38574  2.80548  3.28793      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      2   3.43942  0.12946  3.48861  2.83359      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      3   0.14117  3.38574  2.80548  3.28793      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      4   0.14117  3.38574  2.80548  3.28793      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      5   0.14117  3.38574  2.80548  3.28793      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      6   2.95135  3.59331  0.11655  3.49856      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      7   2.95135  3.59331  0.11655  3.49856      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      8   2.95135  3.59331  0.11655  3.49856      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      9   2.95135  3.59331  0.11655  3.49856      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     10   0.14117  3.38574  2.80548  3.28793     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     11   3.09414  2.59866  3.14209  0.17779     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     12   3.43942  0.12946  3.48861  2.83359     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     13   3.09414  2.59866  3.14209  0.17779     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     14   3.09414  2.59866  3.14209  0.17779     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     15   3.09414  2.59866  3.14209  0.17779     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     16   3.43942  0.12946  3.48861  2.83359     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     17   3.43942  0.12946  3.48861  2.83359     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     18   3.09414  2.59866  3.14209  0.17779     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     19   3.43942  0.12946  3.48861  2.83359     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     20   3.09414  2.59866  3.14209  0.17779     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     21   3.09414  2.59866  3.14209  0.17779     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     22   3.09414  2.59866  3.14209  0.17779     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     23   2.95135  3.59331  0.11655  3.49856     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     24   3.09414  2.59866  3.14209  0.17779     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     25   0.14117  3.38574  2.80548  3.28793     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     26   3.43942  0.12946  3.48861  2.83359     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     27   0.14117  3.38574  2.80548  3.28793     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     28   3.09414  2.59866  3.14209  0.17779     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     29   0.14117  3.38574  2.80548  3.28793     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     30   3.43942  0.12946  3.48861  2.83359     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     31   0.14117  3.38574  2.80548  3.28793     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     32   3.09414  2.59866  3.14209  0.17779     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     33   0.14117  3.38574  2.80548  3.28793     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     34   3.09414  2.59866  3.14209  0.17779     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     35   3.43942  0.12946  3.48861  2.83359     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     36   0.14117  3.38574  2.80548  3.28793     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     37   2.95135  3.59331  0.11655  3.49856     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     38   3.09414  2.59866  3.14209  0.17779     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     39   2.95135  3.59331  0.11655  3.49856     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     40   3.09414  2.59866  3.14209  0.17779     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     41   3.43942  0.12946  3.48861  2.83359     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     42   2.95135  3.59331  0.11655  3.49856     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     43   3.43942  0.12946  3.48861  2.83359     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     44   3.09414  2.59866  3.14209  0.17779     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     45   3.43942  0.12946  3.48861  2.83359     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01855  3.99634        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_thirteena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:53:44 2012
+NSEQ  9
+EFFN  3.335449
+CKSUM 139984797
+STATS LOCAL MSV       -8.1484  0.71932
+STATS LOCAL VITERBI   -7.6823  0.71932
+STATS LOCAL FORWARD   -3.7855  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.48084  1.04177  1.71496  1.42815
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  0.00000        *
+      1   0.14136  3.38434  2.80457  3.28639      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+      2   3.43781  0.12965  3.48707  2.83242      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+      3   0.14136  3.38434  2.80457  3.28639      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+      4   3.43781  0.12965  3.48707  2.83242      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+      5   0.14136  3.38434  2.80457  3.28639      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+      6   3.43781  0.12965  3.48707  2.83242      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+      7   3.43781  0.12965  3.48707  2.83242      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+      8   0.14136  3.38434  2.80457  3.28639      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+      9   3.43781  0.12965  3.48707  2.83242      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     10   3.43781  0.12965  3.48707  2.83242     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     11   3.09273  2.59776  3.14073  0.17801     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     12   3.43781  0.12965  3.48707  2.83242     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     13   3.09273  2.59776  3.14073  0.17801     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     14   2.95037  3.59189  0.11671  3.49699     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     15   3.43781  0.12965  3.48707  2.83242     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     16   3.09273  2.59776  3.14073  0.17801     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     17   3.09273  2.59776  3.14073  0.17801     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     18   2.95037  3.59189  0.11671  3.49699     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     19   3.43781  0.12965  3.48707  2.83242     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     20   0.14136  3.38434  2.80457  3.28639     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     21   3.00628  0.24684  3.06821  2.09759     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     22   2.95037  3.59189  0.11671  3.49699     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     23   3.09273  2.59776  3.14073  0.17801     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     24   2.95037  3.59189  0.11671  3.49699     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     25   2.95037  3.59189  0.11671  3.49699     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     26   3.09273  2.59776  3.14073  0.17801     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     27   0.14136  3.38434  2.80457  3.28639     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     28   3.43781  0.12965  3.48707  2.83242     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     29   3.09273  2.59776  3.14073  0.17801     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     30   3.43781  0.12965  3.48707  2.83242     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     31   3.43781  0.12965  3.48707  2.83242     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     32   3.43781  0.12965  3.48707  2.83242     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     33   0.14136  3.38434  2.80457  3.28639     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     34   2.82574  2.00897  2.88356  0.28679     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     35   3.09273  2.59776  3.14073  0.17801     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     36   3.09273  2.59776  3.14073  0.17801     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     37   3.43781  0.12965  3.48707  2.83242     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     38   0.14136  3.38434  2.80457  3.28639     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     39   2.95037  3.59189  0.11671  3.49699     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     40   3.09273  2.59776  3.14073  0.17801     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     41   2.95037  3.59189  0.11671  3.49699     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     42   0.14136  3.38434  2.80457  3.28639     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     43   0.14136  3.38434  2.80457  3.28639     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     44   3.43781  0.12965  3.48707  2.83242     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01376  4.01376  1.46634  0.26236  1.09861  0.40547
+     45   3.43781  0.12965  3.48707  2.83242     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01857  3.99553        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_thirteenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:53:51 2012
+NSEQ  20
+EFFN  3.344727
+CKSUM 3926777842
+STATS LOCAL MSV       -8.0192  0.71933
+STATS LOCAL VITERBI   -7.8856  0.71933
+STATS LOCAL FORWARD   -3.6871  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72605  0.97133  1.46172  1.55306
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  0.00000        *
+      1   0.14097  3.38729  2.80649  3.28963      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+      2   3.44121  0.12925  3.49032  2.83489      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+      3   0.14097  3.38729  2.80649  3.28963      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+      4   3.44121  0.12925  3.49032  2.83489      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+      5   0.14097  3.38729  2.80649  3.28963      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+      6   3.44121  0.12925  3.49032  2.83489      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+      7   3.44121  0.12925  3.49032  2.83489      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+      8   2.95243  3.59489  0.11638  3.50030      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+      9   3.44121  0.12925  3.49032  2.83489      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     10   3.44121  0.12925  3.49032  2.83489     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     11   3.09571  2.59966  3.14360  0.17754     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     12   3.44121  0.12925  3.49032  2.83489     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     13   3.09571  2.59966  3.14360  0.17754     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     14   2.95243  3.59489  0.11638  3.50030     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     15   3.44121  0.12925  3.49032  2.83489     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     16   3.09571  2.59966  3.14360  0.17754     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     17   3.44121  0.12925  3.49032  2.83489     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     18   2.95243  3.59489  0.11638  3.50030     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     19   3.44121  0.12925  3.49032  2.83489     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     20   0.14097  3.38729  2.80649  3.28963     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     21   2.88258  0.29778  2.94754  1.90330     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     22   2.95243  3.59489  0.11638  3.50030     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     23   3.44121  0.12925  3.49032  2.83489     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     24   2.95243  3.59489  0.11638  3.50030     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     25   2.95243  3.59489  0.11638  3.50030     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     26   3.09571  2.59966  3.14360  0.17754     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     27   0.14097  3.38729  2.80649  3.28963     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     28   3.44121  0.12925  3.49032  2.83489     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     29   3.09571  2.59966  3.14360  0.17754     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     30   3.44121  0.12925  3.49032  2.83489     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     31   3.44121  0.12925  3.49032  2.83489     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     32   3.44121  0.12925  3.49032  2.83489     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     33   2.95243  3.59489  0.11638  3.50030     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     34   3.09571  2.59966  3.14360  0.17754     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     35   3.09571  2.59966  3.14360  0.17754     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     36   3.09571  2.59966  3.14360  0.17754     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     37   3.44121  0.12925  3.49032  2.83489     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     38   0.14097  3.38729  2.80649  3.28963     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     39   2.95243  3.59489  0.11638  3.50030     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     40   3.09571  2.59966  3.14360  0.17754     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     41   2.95243  3.59489  0.11638  3.50030     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     42   0.14097  3.38729  2.80649  3.28963     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     43   2.95243  3.59489  0.11638  3.50030     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     44   3.03924  0.23563  3.10030  2.14542     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     45   2.38711  0.31887  2.45124  2.35442     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01854  3.99723        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_thirteenbb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:53:55 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1469591864
+STATS LOCAL MSV       -8.0813  0.72030
+STATS LOCAL VITERBI   -7.7552  0.72030
+STATS LOCAL FORWARD   -3.4416  0.72030
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55466  1.04845  1.61897  1.42646
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   0.15719  3.27118  2.73043  3.16274      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   3.30705  0.14631  3.36166  2.73626     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.86982  3.47591  0.13017  3.36931     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   3.30705  0.14631  3.36166  2.73626     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   0.15719  3.27118  2.73043  3.16274     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_thirteenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:54:02 2012
+NSEQ  6
+EFFN  3.676758
+CKSUM 138006768
+STATS LOCAL MSV       -7.7146  0.71932
+STATS LOCAL VITERBI   -7.6336  0.71932
+STATS LOCAL FORWARD   -4.1384  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.56284  1.02897  1.71089  1.37681
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  0.00000        *
+      1   0.12855  3.48721  2.87098  3.39919      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+      2   3.55586  0.11648  3.59995  2.91754      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+      3   0.12855  3.48721  2.87098  3.39919      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+      4   3.55586  0.11648  3.59995  2.91754      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+      5   0.12855  3.48721  2.87098  3.39919      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+      6   3.55586  0.11648  3.59995  2.91754      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+      7   3.19790  2.66450  3.24182  0.16202      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+      8   3.02074  3.69511  0.10606  3.61119      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+      9   3.55586  0.11648  3.59995  2.91754      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     10   3.55586  0.11648  3.59995  2.91754     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     11   3.19790  2.66450  3.24182  0.16202     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     12   3.55586  0.11648  3.59995  2.91754     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     13   3.19790  2.66450  3.24182  0.16202     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     14   3.02074  3.69511  0.10606  3.61119     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     15   3.19790  2.66450  3.24182  0.16202     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     16   3.19790  2.66450  3.24182  0.16202     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     17   3.19790  2.66450  3.24182  0.16202     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     18   0.94052  1.00771  2.17954  2.02929     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     19   3.55586  0.11648  3.59995  2.91754     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     20   0.12855  3.48721  2.87098  3.39919     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     21   0.66712  2.29396  2.24218  1.27396     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     22   3.02074  3.69511  0.10606  3.61119     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     23   3.55586  0.11648  3.59995  2.91754     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     24   0.12855  3.48721  2.87098  3.39919     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     25   3.02074  3.69511  0.10606  3.61119     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     26   3.19790  2.66450  3.24182  0.16202     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     27   3.02074  3.69511  0.10606  3.61119     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     28   3.55586  0.11648  3.59995  2.91754     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     29   0.12855  3.48721  2.87098  3.39919     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     30   3.55586  0.11648  3.59995  2.91754     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     31   3.55586  0.11648  3.59995  2.91754     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     32   3.55586  0.11648  3.59995  2.91754     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     33   0.12855  3.48721  2.87098  3.39919     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     34   3.19790  2.66450  3.24182  0.16202     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     35   3.19790  2.66450  3.24182  0.16202     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     36   3.19790  2.66450  3.24182  0.16202     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     37   3.55586  0.11648  3.59995  2.91754     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     38   0.12855  3.48721  2.87098  3.39919     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     39   3.02074  3.69511  0.10606  3.61119     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     40   3.55586  0.11648  3.59995  2.91754     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     41   3.02074  3.69511  0.10606  3.61119     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     42   3.55586  0.11648  3.59995  2.91754     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     43   3.55586  0.11648  3.59995  2.91754     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     44   3.19790  2.66450  3.24182  0.16202     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03462  4.07359  4.07359  1.46634  0.26236  1.09861  0.40547
+     45   2.56017  0.58808  2.63122  1.21967     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01746  4.05643        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_threea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:46:58 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1268247449
+STATS LOCAL MSV       -7.3625  0.72824
+STATS LOCAL VITERBI   -8.2348  0.72824
+STATS LOCAL FORWARD   -3.6133  0.72824
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66059  1.44581  1.26603  1.22940
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.57915  2.25909  2.64442  0.28946     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_threeb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:47:05 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3892526639
+STATS LOCAL MSV       -7.9454  0.72246
+STATS LOCAL VITERBI   -7.9639  0.72246
+STATS LOCAL FORWARD   -4.0448  0.72246
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.78275  1.43417  1.30656  1.13083
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.10551  2.22611  0.68843  1.31713      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   0.15719  3.27118  2.73043  3.16274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.09516  1.42731  0.67263  2.06647     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.97980  2.52563  3.03204  0.19727     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.42587  0.63365  2.49879  1.20810     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.42586  1.33558  2.49582  0.56887     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.97980  2.52563  3.03204  0.19727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_threec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:47:11 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 4079785563
+STATS LOCAL MSV       -8.0314  0.72082
+STATS LOCAL VITERBI   -7.8511  0.72082
+STATS LOCAL FORWARD   -3.9522  0.72082
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62542  1.59063  1.38012  1.05605
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   0.15719  3.27118  2.73043  3.16274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.97980  2.52563  3.03204  0.19727     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.97980  2.52563  3.03204  0.19727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_threed_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:47:17 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3952366831
+STATS LOCAL MSV       -7.3931  0.72871
+STATS LOCAL VITERBI   -8.1902  0.72871
+STATS LOCAL FORWARD   -3.4651  0.72871
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.70464  1.38559  1.24625  1.27151
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.57915  2.25909  2.64442  0.28946     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.92825  2.28391  0.95698  2.13014     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_twelvea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:49:56 2012
+NSEQ  6
+EFFN  3.606445
+CKSUM 1425331606
+STATS LOCAL MSV       -7.6440  0.71933
+STATS LOCAL VITERBI   -7.7492  0.71933
+STATS LOCAL FORWARD   -4.2833  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27087  1.33665  1.80281  1.23151
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  0.00000        *
+      1   3.17699  2.65124  3.22173  0.16506      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+      2   3.00708  3.67496  0.10805  3.58886      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+      3   0.13096  3.46696  2.85796  3.37696      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+      4   0.13096  3.46696  2.85796  3.37696      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+      5   3.53270  0.11893  3.57783  2.90095      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+      6   3.00708  3.67496  0.10805  3.58886      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+      7   3.17699  2.65124  3.22173  0.16506      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+      8   0.13096  3.46696  2.85796  3.37696      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+      9   0.13096  3.46696  2.85796  3.37696      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     10   3.53270  0.11893  3.57783  2.90095     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     11   3.53270  0.11893  3.57783  2.90095     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     12   0.13096  3.46696  2.85796  3.37696     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     13   0.13096  3.46696  2.85796  3.37696     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     14   3.53270  0.11893  3.57783  2.90095     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     15   0.13096  3.46696  2.85796  3.37696     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     16   3.53270  0.11893  3.57783  2.90095     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     17   0.13096  3.46696  2.85796  3.37696     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     18   3.53270  0.11893  3.57783  2.90095     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     19   3.17699  2.65124  3.22173  0.16506     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     20   2.45695  0.96987  2.52827  0.78664     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     21   3.17699  2.65124  3.22173  0.16506     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     22   3.17699  2.65124  3.22173  0.16506     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     23   3.17699  2.65124  3.22173  0.16506     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     24   3.00708  3.67496  0.10805  3.58886     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     25   3.17699  2.65124  3.22173  0.16506     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     26   0.13096  3.46696  2.85796  3.37696     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     27   3.53270  0.11893  3.57783  2.90095     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     28   3.00708  3.67496  0.10805  3.58886     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     29   3.17699  2.65124  3.22173  0.16506     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     30   3.53270  0.11893  3.57783  2.90095     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     31   3.53270  0.11893  3.57783  2.90095     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     32   0.13096  3.46696  2.85796  3.37696     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     33   3.17699  2.65124  3.22173  0.16506     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     34   3.53270  0.11893  3.57783  2.90095     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     35   3.17699  2.65124  3.22173  0.16506     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     36   3.53270  0.11893  3.57783  2.90095     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     37   0.13096  3.46696  2.85796  3.37696     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     38   3.00708  3.67496  0.10805  3.58886     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     39   3.17699  2.65124  3.22173  0.16506     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     40   3.00708  3.67496  0.10805  3.58886     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     41   0.13096  3.46696  2.85796  3.37696     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     42   0.13096  3.46696  2.85796  3.37696     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     43   3.17699  2.65124  3.22173  0.16506     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     44   2.78284  1.79931  2.84298  0.33621     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     45   2.78284  1.79931  2.84298  0.33621     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01768  4.04418        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_twelveb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:50:00 2012
+NSEQ  4
+EFFN  3.613281
+CKSUM 327718252
+STATS LOCAL MSV       -7.7152  0.71933
+STATS LOCAL VITERBI   -7.8787  0.71933
+STATS LOCAL FORWARD   -4.2409  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22953  1.30344  1.79734  1.30847
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  0.00000        *
+      1   3.53498  0.11869  3.58001  2.90259      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+      2   3.17904  2.65254  3.22370  0.16476      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+      3   3.00842  3.67695  0.10785  3.59106      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+      4   0.13072  3.46895  2.85924  3.37914      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+      5   0.13072  3.46895  2.85924  3.37914      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+      6   3.53498  0.11869  3.58001  2.90259      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+      7   3.00842  3.67695  0.10785  3.59106      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+      8   3.17904  2.65254  3.22370  0.16476      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+      9   0.13072  3.46895  2.85924  3.37914      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     10   0.13072  3.46895  2.85924  3.37914     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     11   3.53498  0.11869  3.58001  2.90259     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     12   3.53498  0.11869  3.58001  2.90259     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     13   0.13072  3.46895  2.85924  3.37914     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     14   0.13072  3.46895  2.85924  3.37914     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     15   3.53498  0.11869  3.58001  2.90259     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     16   0.13072  3.46895  2.85924  3.37914     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     17   3.53498  0.11869  3.58001  2.90259     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     18   0.13072  3.46895  2.85924  3.37914     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     19   3.53498  0.11869  3.58001  2.90259     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     20   3.17904  2.65254  3.22370  0.16476     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     21   0.96412  2.17979  2.19640  0.93035     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     22   0.96412  2.17979  2.19640  0.93035     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     23   3.17904  2.65254  3.22370  0.16476     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     24   3.00842  3.67695  0.10785  3.59106     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     25   3.17904  2.65254  3.22370  0.16476     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     26   0.13072  3.46895  2.85924  3.37914     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     27   3.53498  0.11869  3.58001  2.90259     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     28   3.00842  3.67695  0.10785  3.59106     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     29   3.17904  2.65254  3.22370  0.16476     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     30   3.53498  0.11869  3.58001  2.90259     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     31   3.53498  0.11869  3.58001  2.90259     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     32   0.13072  3.46895  2.85924  3.37914     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     33   3.17904  2.65254  3.22370  0.16476     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     34   3.53498  0.11869  3.58001  2.90259     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     35   3.17904  2.65254  3.22370  0.16476     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     36   3.53498  0.11869  3.58001  2.90259     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     37   0.13072  3.46895  2.85924  3.37914     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     38   3.00842  3.67695  0.10785  3.59106     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     39   3.17904  2.65254  3.22370  0.16476     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     40   3.00842  3.67695  0.10785  3.59106     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     41   0.13072  3.46895  2.85924  3.37914     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     42   0.13072  3.46895  2.85924  3.37914     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     43   3.17904  2.65254  3.22370  0.16476     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     44   3.17904  2.65254  3.22370  0.16476     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     45   3.17904  2.65254  3.22370  0.16476     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01766  4.04538        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_twelvec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:50:07 2012
+NSEQ  12
+EFFN  3.870117
+CKSUM 3267954346
+STATS LOCAL MSV       -7.1098  0.71933
+STATS LOCAL VITERBI   -7.7778  0.71933
+STATS LOCAL FORWARD   -4.1940  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.25985  1.20243  1.78234  1.39595
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  0.00000        *
+      1   3.61664  0.11030  3.65797  2.96085      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+      2   3.25346  2.69972  3.29520  0.15423      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+      3   3.05634  3.74778  0.10105  3.66961      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+      4   0.12243  3.54056  2.90525  3.45780      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+      5   0.12243  3.54056  2.90525  3.45780      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+      6   3.61664  0.11030  3.65797  2.96085      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+      7   3.05634  3.74778  0.10105  3.66961      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+      8   3.25346  2.69972  3.29520  0.15423      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+      9   0.12243  3.54056  2.90525  3.45780      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     10   0.12243  3.54056  2.90525  3.45780     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     11   3.61664  0.11030  3.65797  2.96085     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     12   3.61664  0.11030  3.65797  2.96085     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     13   0.12243  3.54056  2.90525  3.45780     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     14   0.12243  3.54056  2.90525  3.45780     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     15   3.61664  0.11030  3.65797  2.96085     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     16   0.12243  3.54056  2.90525  3.45780     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     17   3.61664  0.11030  3.65797  2.96085     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     18   0.12243  3.54056  2.90525  3.45780     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     19   3.61664  0.11030  3.65797  2.96085     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     20   2.26557  2.24150  1.36887  0.62448     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     21   3.61664  0.11030  3.65797  2.96085     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     22   3.25346  2.69972  3.29520  0.15423     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     23   3.25346  2.69972  3.29520  0.15423     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     24   3.05634  3.74778  0.10105  3.66961     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     25   3.25346  2.69972  3.29520  0.15423     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     26   0.12243  3.54056  2.90525  3.45780     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     27   3.61664  0.11030  3.65797  2.96085     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     28   3.05634  3.74778  0.10105  3.66961     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     29   2.26012  2.49659  2.82398  0.28246     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     30   3.61664  0.11030  3.65797  2.96085     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     31   3.61664  0.11030  3.65797  2.96085     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     32   0.12243  3.54056  2.90525  3.45780     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     33   3.25346  2.69972  3.29520  0.15423     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     34   2.77036  0.40521  2.83796  1.55128     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     35   3.25346  2.69972  3.29520  0.15423     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     36   3.61664  0.11030  3.65797  2.96085     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     37   0.12243  3.54056  2.90525  3.45780     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     38   3.05634  3.74778  0.10105  3.66961     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     39   3.25346  2.69972  3.29520  0.15423     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     40   3.05634  3.74778  0.10105  3.66961     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     41   0.12243  3.54056  2.90525  3.45780     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     42   0.12243  3.54056  2.90525  3.45780     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     43   3.25346  2.69972  3.29520  0.15423     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     44   2.52094  0.74045  2.59225  1.00004     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03350  4.10596  4.10596  1.46634  0.26236  1.09861  0.40547
+     45   2.52094  0.74045  2.59225  1.00004     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01689  4.08935        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_twentya_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:56:02 2012
+NSEQ  4
+EFFN  3.566406
+CKSUM 1107581771
+STATS LOCAL MSV       -7.4293  0.71932
+STATS LOCAL VITERBI   -7.8373  0.71932
+STATS LOCAL FORWARD   -3.8028  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82161  1.57746  1.30423  1.02067
+          1.38629  1.38629  1.38629  1.38629
+          0.03530  4.05463  4.05463  1.46634  0.26236  0.00000        *
+      1   3.51925  0.12039  3.56498  2.89129      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03530  4.05463  4.05463  1.46634  0.26236  1.09861  0.40547
+      2   2.99911  3.66324  0.10922  3.57588      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03530  4.05463  4.05463  1.46634  0.26236  1.09861  0.40547
+      3   3.51925  0.12039  3.56498  2.89129      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03530  4.05463  4.05463  1.46634  0.26236  1.09861  0.40547
+      4   0.13239  3.45521  2.85039  3.36407      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03530  4.05463  4.05463  1.46634  0.26236  1.09861  0.40547
+      5   3.51925  0.12039  3.56498  2.89129      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03530  4.05463  4.05463  1.46634  0.26236  1.09861  0.40547
+      6   2.65809  1.57623  2.72240  0.41939      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03530  4.05463  4.05463  1.46634  0.26236  1.09861  0.40547
+      7   3.16491  2.64359  3.21012  0.16685      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03530  4.05463  4.05463  1.46634  0.26236  1.09861  0.40547
+      8   2.99911  3.66324  0.10922  3.57588      8 - -
+          1.38629  1.38629  1.38629  1.38629
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+      9   2.99911  3.66324  0.10922  3.57588      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03530  4.05463  4.05463  1.46634  0.26236  1.09861  0.40547
+     10   3.51925  0.12039  3.56498  2.89129     10 - -
+          1.38629  1.38629  1.38629  1.38629
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+     12   3.51925  0.12039  3.56498  2.89129     12 - -
+          1.38629  1.38629  1.38629  1.38629
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+     13   3.16491  2.64359  3.21012  0.16685     13 - -
+          1.38629  1.38629  1.38629  1.38629
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+     14   0.13239  3.45521  2.85039  3.36407     14 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     22   0.13239  3.45521  2.85039  3.36407     22 - -
+          1.38629  1.38629  1.38629  1.38629
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+     24   3.51925  0.12039  3.56498  2.89129     24 - -
+          1.38629  1.38629  1.38629  1.38629
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+     25   0.13239  3.45521  2.85039  3.36407     25 - -
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+          1.38629  1.38629  1.38629  1.38629
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+     27   2.99911  3.66324  0.10922  3.57588     27 - -
+          1.38629  1.38629  1.38629  1.38629
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+     28   3.16491  2.64359  3.21012  0.16685     28 - -
+          1.38629  1.38629  1.38629  1.38629
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+     29   3.16491  2.64359  3.21012  0.16685     29 - -
+          1.38629  1.38629  1.38629  1.38629
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+     30   3.16491  2.64359  3.21012  0.16685     30 - -
+          1.38629  1.38629  1.38629  1.38629
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+     31   2.99911  3.66324  0.10922  3.57588     31 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     33   3.16491  2.64359  3.21012  0.16685     33 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     35   3.51925  0.12039  3.56498  2.89129     35 - -
+          1.38629  1.38629  1.38629  1.38629
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+     36   0.13239  3.45521  2.85039  3.36407     36 - -
+          1.38629  1.38629  1.38629  1.38629
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+     37   2.99911  3.66324  0.10922  3.57588     37 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     39   2.99911  3.66324  0.10922  3.57588     39 - -
+          1.38629  1.38629  1.38629  1.38629
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+     40   3.16491  2.64359  3.21012  0.16685     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03530  4.05463  4.05463  1.46634  0.26236  1.09861  0.40547
+     41   2.99911  3.66324  0.10922  3.57588     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03530  4.05463  4.05463  1.46634  0.26236  1.09861  0.40547
+     42   3.16491  2.64359  3.21012  0.16685     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03530  4.05463  4.05463  1.46634  0.26236  1.09861  0.40547
+     43   3.16491  2.64359  3.21012  0.16685     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03530  4.05463  4.05463  1.46634  0.26236  1.09861  0.40547
+     44   2.31607  2.25114  1.58918  0.52430     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03530  4.05463  4.05463  1.46634  0.26236  1.09861  0.40547
+     45   2.99911  3.66324  0.10922  3.57588     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01781  4.03714        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_twentyb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:56:09 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 708606259
+STATS LOCAL MSV       -7.4772  0.72918
+STATS LOCAL VITERBI   -8.3653  0.72918
+STATS LOCAL FORWARD   -3.3564  0.72918
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62240  1.63643  1.25842  1.12764
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
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+      8   2.57915  2.25909  2.64442  0.28946      8 - -
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+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Alveolata_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 22:42:51 2012
+NSEQ  10
+EFFN  3.500977
+CKSUM 3395317246
+STATS LOCAL MSV       -7.5727  0.71933
+STATS LOCAL VITERBI   -7.6197  0.71933
+STATS LOCAL FORWARD   -4.0622  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62863  1.30265  1.45636  1.20762
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  0.00000        *
+      1   3.49685  0.12286  3.54356  2.87517      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+      2   2.98580  3.64368  0.11122  3.55423      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+      3   3.49685  0.12286  3.54356  2.87517      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+      4   3.14491  2.63090  3.19089  0.16986      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+      5   3.14491  2.63090  3.19089  0.16986      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+      6   3.14491  2.63090  3.19089  0.16986      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+      7   3.49685  0.12286  3.54356  2.87517      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+      8   2.98580  3.64368  0.11122  3.55423      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+      9   2.98580  3.64368  0.11122  3.55423      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     10   2.98580  3.64368  0.11122  3.55423     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     11   0.13479  3.43568  2.83780  3.34265     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     12   3.14491  2.63090  3.19089  0.16986     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     13   0.13479  3.43568  2.83780  3.34265     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     14   3.14491  2.63090  3.19089  0.16986     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     15   3.49685  0.12286  3.54356  2.87517     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     16   3.49685  0.12286  3.54356  2.87517     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     17   3.49685  0.12286  3.54356  2.87517     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     18   3.14491  2.63090  3.19089  0.16986     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     19   2.98580  3.64368  0.11122  3.55423     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     20   0.13479  3.43568  2.83780  3.34265     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     21   0.13479  3.43568  2.83780  3.34265     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     22   0.13479  3.43568  2.83780  3.34265     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     23   2.98580  3.64368  0.11122  3.55423     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     24   3.49685  0.12286  3.54356  2.87517     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     25   0.13479  3.43568  2.83780  3.34265     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     26   3.14491  2.63090  3.19089  0.16986     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     27   2.98580  3.64368  0.11122  3.55423     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     28   3.49685  0.12286  3.54356  2.87517     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     29   3.49685  0.12286  3.54356  2.87517     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     30   3.14491  2.63090  3.19089  0.16986     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     31   2.62489  2.97458  0.24797  2.34233     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     32   3.49685  0.12286  3.54356  2.87517     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     33   3.14491  2.63090  3.19089  0.16986     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     34   3.14491  2.63090  3.19089  0.16986     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     35   3.49685  0.12286  3.54356  2.87517     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     36   0.13479  3.43568  2.83780  3.34265     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     37   2.98580  3.64368  0.11122  3.55423     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     38   3.14491  2.63090  3.19089  0.16986     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     39   2.98580  3.64368  0.11122  3.55423     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     40   3.14491  2.63090  3.19089  0.16986     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     41   3.49685  0.12286  3.54356  2.87517     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     42   3.14491  2.63090  3.19089  0.16986     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     43   0.13479  3.43568  2.83780  3.34265     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     44   1.77036  2.10336  1.59709  0.68280     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     45   3.14491  2.63090  3.19089  0.16986     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01802  4.02553        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_eighta_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:27:07 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3325641686
+STATS LOCAL MSV       -7.9406  0.72105
+STATS LOCAL VITERBI   -7.8084  0.72105
+STATS LOCAL FORWARD   -4.1819  0.72105
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.44871  1.52892  1.22347  1.36984
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   0.15719  3.27118  2.73043  3.16274      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.86982  3.47591  0.13017  3.36931      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   0.15719  3.27118  2.73043  3.16274     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.54754  2.55777  1.36722  2.41535     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.54754  2.55777  1.36722  2.41535     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.86982  3.47591  0.13017  3.36931     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_eightb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:27:12 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3604720587
+STATS LOCAL MSV       -7.3490  0.72800
+STATS LOCAL VITERBI   -8.3720  0.72800
+STATS LOCAL FORWARD   -3.6028  0.72800
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39767  1.46026  1.31436  1.37831
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   0.23862  2.84929  2.43386  2.70756     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_elevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:27:36 2012
+NSEQ  32
+EFFN  3.675781
+CKSUM 3417897911
+STATS LOCAL MSV       -7.3843  0.71933
+STATS LOCAL VITERBI   -7.6506  0.71933
+STATS LOCAL FORWARD   -4.0339  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.25458  1.46041  1.35155  1.49690
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  0.00000        *
+      1   0.30737  2.17041  2.53008  2.64736      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+      2   0.40424  1.86056  2.41150  2.43900      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+      3   0.12858  3.48693  2.87081  3.39888      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+      4   3.55554  0.11651  3.59965  2.91731      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+      5   3.19761  2.66431  3.24155  0.16206      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+      6   2.80026  2.50234  2.42463  0.26292      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+      7   3.19761  2.66431  3.24155  0.16206      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+      8   2.86129  0.33229  2.92687  1.76049      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+      9   0.12858  3.48693  2.87081  3.39888      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     10   3.02055  3.69484  0.10609  3.61089     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     11   3.55554  0.11651  3.59965  2.91731     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     12   3.02055  3.69484  0.10609  3.61089     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     13   0.44013  2.76228  1.51098  2.62826     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     14   3.19761  2.66431  3.24155  0.16206     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     15   3.02055  3.69484  0.10609  3.61089     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     16   3.02055  3.69484  0.10609  3.61089     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     17   0.12858  3.48693  2.87081  3.39888     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     18   3.19761  2.66431  3.24155  0.16206     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     19   3.02055  3.69484  0.10609  3.61089     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     20   3.19761  2.66431  3.24155  0.16206     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     21   3.55554  0.11651  3.59965  2.91731     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     22   3.19761  2.66431  3.24155  0.16206     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     23   3.19761  2.66431  3.24155  0.16206     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     24   3.02055  3.69484  0.10609  3.61089     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     25   3.02055  3.69484  0.10609  3.61089     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     26   3.55554  0.11651  3.59965  2.91731     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     27   3.19761  2.66431  3.24155  0.16206     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     28   3.55554  0.11651  3.59965  2.91731     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     29   0.12858  3.48693  2.87081  3.39888     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     30   3.55554  0.11651  3.59965  2.91731     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     31   0.12858  3.48693  2.87081  3.39888     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     32   3.55554  0.11651  3.59965  2.91731     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     33   0.21326  3.19501  2.24953  3.08698     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     34   0.12858  3.48693  2.87081  3.39888     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     35   3.55554  0.11651  3.59965  2.91731     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     36   3.02055  3.69484  0.10609  3.61089     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     37   0.12858  3.48693  2.87081  3.39888     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     38   3.19761  2.66431  3.24155  0.16206     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     39   3.02055  3.69484  0.10609  3.61089     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     40   0.12858  3.48693  2.87081  3.39888     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     41   0.12858  3.48693  2.87081  3.39888     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     42   3.02055  3.69484  0.10609  3.61089     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     43   3.02055  3.69484  0.10609  3.61089     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     44   0.12858  3.48693  2.87081  3.39888     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03463  4.07342  4.07342  1.46634  0.26236  1.09861  0.40547
+     45   3.55554  0.11651  3.59965  2.91731     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01747  4.05626        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_elevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:27:41 2012
+NSEQ  5
+EFFN  3.208008
+CKSUM 4067533443
+STATS LOCAL MSV       -8.1074  0.71934
+STATS LOCAL VITERBI   -7.6996  0.71934
+STATS LOCAL FORWARD   -3.9608  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27246  1.46892  1.31219  1.51207
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  0.00000        *
+      1   0.14694  3.34284  2.77755  3.24098      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      2   0.14694  3.34284  2.77755  3.24098      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      3   0.14694  3.34284  2.77755  3.24098      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      4   3.05099  2.57118  3.10057  0.18486      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      5   3.05099  2.57118  3.10057  0.18486      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      6   3.05099  2.57118  3.10057  0.18486      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      7   3.05099  2.57118  3.10057  0.18486      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      8   3.38993  0.13548  3.44120  2.79746      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      9   0.14694  3.34284  2.77755  3.24098      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     10   2.92124  3.54964  0.12142  3.45039     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     11   3.38993  0.13548  3.44120  2.79746     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     12   2.92124  3.54964  0.12142  3.45039     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     13   2.92124  3.54964  0.12142  3.45039     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     14   3.05099  2.57118  3.10057  0.18486     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     15   2.92124  3.54964  0.12142  3.45039     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     16   2.92124  3.54964  0.12142  3.45039     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     17   0.14694  3.34284  2.77755  3.24098     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     18   3.05099  2.57118  3.10057  0.18486     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     19   2.92124  3.54964  0.12142  3.45039     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     20   3.05099  2.57118  3.10057  0.18486     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     21   3.38993  0.13548  3.44120  2.79746     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     22   3.05099  2.57118  3.10057  0.18486     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     23   3.38993  0.13548  3.44120  2.79746     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     24   2.92124  3.54964  0.12142  3.45039     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     25   2.92124  3.54964  0.12142  3.45039     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     26   3.38993  0.13548  3.44120  2.79746     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     27   3.05099  2.57118  3.10057  0.18486     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     28   3.38993  0.13548  3.44120  2.79746     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     29   0.14694  3.34284  2.77755  3.24098     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     30   3.38993  0.13548  3.44120  2.79746     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     31   0.14694  3.34284  2.77755  3.24098     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     32   3.38993  0.13548  3.44120  2.79746     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     33   0.14694  3.34284  2.77755  3.24098     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     34   0.14694  3.34284  2.77755  3.24098     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     35   3.38993  0.13548  3.44120  2.79746     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     36   2.92124  3.54964  0.12142  3.45039     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     37   0.14694  3.34284  2.77755  3.24098     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     38   3.05099  2.57118  3.10057  0.18486     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     39   2.92124  3.54964  0.12142  3.45039     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     40   0.14694  3.34284  2.77755  3.24098     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     41   0.14694  3.34284  2.77755  3.24098     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     42   2.92124  3.54964  0.12142  3.45039     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     43   2.92124  3.54964  0.12142  3.45039     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     44   0.14694  3.34284  2.77755  3.24098     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     45   3.38993  0.13548  3.44120  2.79746     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01902  3.97180        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_elevenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:27:45 2012
+NSEQ  20
+EFFN  3.481445
+CKSUM 987744611
+STATS LOCAL MSV       -7.5848  0.71932
+STATS LOCAL VITERBI   -7.4852  0.71932
+STATS LOCAL FORWARD   -4.0632  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.25409  1.53980  1.40804  1.36407
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  0.00000        *
+      1   3.13887  2.62707  3.18509  0.17078      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+      2   0.13553  3.42977  2.83398  3.33617      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+      3   3.13887  2.62707  3.18509  0.17078      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+      4   3.49007  0.12362  3.53707  2.87028      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+      5   3.13887  2.62707  3.18509  0.17078      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+      6   3.13887  2.62707  3.18509  0.17078      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+      7   3.13887  2.62707  3.18509  0.17078      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+      8   3.49007  0.12362  3.53707  2.87028      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+      9   0.13553  3.42977  2.83398  3.33617      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     10   2.98175  3.63775  0.11183  3.54767     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     11   3.49007  0.12362  3.53707  2.87028     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     12   2.98175  3.63775  0.11183  3.54767     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     13   0.13553  3.42977  2.83398  3.33617     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     14   3.13887  2.62707  3.18509  0.17078     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     15   2.98175  3.63775  0.11183  3.54767     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     16   2.98175  3.63775  0.11183  3.54767     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     17   0.13553  3.42977  2.83398  3.33617     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     18   3.13887  2.62707  3.18509  0.17078     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     19   2.98175  3.63775  0.11183  3.54767     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     20   0.98772  2.55500  0.77629  2.41045     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     21   3.49007  0.12362  3.53707  2.87028     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     22   3.13887  2.62707  3.18509  0.17078     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     23   3.49007  0.12362  3.53707  2.87028     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     24   2.98175  3.63775  0.11183  3.54767     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     25   2.98175  3.63775  0.11183  3.54767     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     26   0.13553  3.42977  2.83398  3.33617     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     27   3.13887  2.62707  3.18509  0.17078     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     28   3.49007  0.12362  3.53707  2.87028     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     29   3.13887  2.62707  3.18509  0.17078     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     30   3.49007  0.12362  3.53707  2.87028     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     31   0.13553  3.42977  2.83398  3.33617     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     32   3.13887  2.62707  3.18509  0.17078     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     33   0.13553  3.42977  2.83398  3.33617     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     34   0.13553  3.42977  2.83398  3.33617     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     35   3.49007  0.12362  3.53707  2.87028     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     36   2.98175  3.63775  0.11183  3.54767     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     37   0.13553  3.42977  2.83398  3.33617     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     38   3.13887  2.62707  3.18509  0.17078     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     39   2.98175  3.63775  0.11183  3.54767     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     40   0.13553  3.42977  2.83398  3.33617     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     41   0.13553  3.42977  2.83398  3.33617     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     42   2.98175  3.63775  0.11183  3.54767     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     43   0.13553  3.42977  2.83398  3.33617     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     44   0.22376  3.13411  2.22332  3.02203     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     45   3.06247  0.19963  2.76820  2.63920     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01808  4.02203        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:26:27 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3440808981
+STATS LOCAL MSV       -7.7336  0.72845
+STATS LOCAL VITERBI   -8.5172  0.72845
+STATS LOCAL FORWARD   -3.3604  0.72845
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33246  1.71713  1.20095  1.36382
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   0.23862  2.84929  2.43386  2.70756     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   0.23862  2.84929  2.43386  2.70756     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.15554  1.00938  2.23102  0.88601     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_foura_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:26:14 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3441996736
+STATS LOCAL MSV       -7.3600  0.72755
+STATS LOCAL VITERBI   -8.3191  0.72755
+STATS LOCAL FORWARD   -3.0189  0.72755
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28872  1.35377  1.31697  1.61865
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   0.23862  2.84929  2.43386  2.70756     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   0.23862  2.84929  2.43386  2.70756     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_fourb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:26:19 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 909930947
+STATS LOCAL MSV       -7.5897  0.72766
+STATS LOCAL VITERBI   -8.2123  0.72766
+STATS LOCAL FORWARD   -3.0207  0.72766
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34189  1.34952  1.31824  1.55270
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   0.23862  2.84929  2.43386  2.70756     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_fourteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:28:14 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3318248282
+STATS LOCAL MSV       -7.9911  0.72105
+STATS LOCAL VITERBI   -7.7365  0.72105
+STATS LOCAL FORWARD   -4.0158  0.72105
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21240  1.73126  1.43760  1.24493
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.43223  0.62271  2.50508  1.22417      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   0.15719  3.27118  2.73043  3.16274     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:25:26 2012
+NSEQ  4
+EFFN  3.691406
+CKSUM 2670710095
+STATS LOCAL MSV       -7.7237  0.71932
+STATS LOCAL VITERBI   -7.6214  0.71932
+STATS LOCAL FORWARD   -3.8013  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.05540  2.03553  1.56163  1.16622
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  0.00000        *
+      1   0.96133  2.18963  2.20654  0.92741      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+      2   3.20221  2.66723  3.24596  0.16140      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+      3   0.12806  3.49137  2.87366  3.40376      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+      4   3.20221  2.66723  3.24596  0.16140      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+      5   3.02354  3.69924  0.10566  3.61577      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+      6   3.20221  2.66723  3.24596  0.16140      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+      7   3.20221  2.66723  3.24596  0.16140      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+      8   3.20221  2.66723  3.24596  0.16140      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+      9   3.20221  2.66723  3.24596  0.16140      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     10   3.02354  3.69924  0.10566  3.61577     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     11   3.56062  0.11598  3.60449  2.92094     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     12   0.12806  3.49137  2.87366  3.40376     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     13   0.12806  3.49137  2.87366  3.40376     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     14   0.12806  3.49137  2.87366  3.40376     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     15   3.02354  3.69924  0.10566  3.61577     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     16   0.12806  3.49137  2.87366  3.40376     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     17   0.12806  3.49137  2.87366  3.40376     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     18   3.20221  2.66723  3.24596  0.16140     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     19   3.02354  3.69924  0.10566  3.61577     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     20   3.20221  2.66723  3.24596  0.16140     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     21   3.56062  0.11598  3.60449  2.92094     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     22   3.20221  2.66723  3.24596  0.16140     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     23   3.20221  2.66723  3.24596  0.16140     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     24   0.12806  3.49137  2.87366  3.40376     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     25   3.02354  3.69924  0.10566  3.61577     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     26   3.56062  0.11598  3.60449  2.92094     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     27   3.20221  2.66723  3.24596  0.16140     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     28   3.56062  0.11598  3.60449  2.92094     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     29   0.12806  3.49137  2.87366  3.40376     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     30   0.12806  3.49137  2.87366  3.40376     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     31   3.20221  2.66723  3.24596  0.16140     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     32   0.12806  3.49137  2.87366  3.40376     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     33   0.84713  2.57557  0.89799  2.43206     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     34   0.12806  3.49137  2.87366  3.40376     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     35   3.20221  2.66723  3.24596  0.16140     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     36   3.02354  3.69924  0.10566  3.61577     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     37   0.12806  3.49137  2.87366  3.40376     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     38   3.20221  2.66723  3.24596  0.16140     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     39   3.02354  3.69924  0.10566  3.61577     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     40   0.12806  3.49137  2.87366  3.40376     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     41   0.12806  3.49137  2.87366  3.40376     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     42   3.02354  3.69924  0.10566  3.61577     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     43   0.12806  3.49137  2.87366  3.40376     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     44   0.12806  3.49137  2.87366  3.40376     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     45   3.20221  2.66723  3.24596  0.16140     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01742  4.05896        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_sixa_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:26:35 2012
+NSEQ  15
+EFFN  3.687744
+CKSUM 797667666
+STATS LOCAL MSV       -7.6502  0.71933
+STATS LOCAL VITERBI   -7.7243  0.71933
+STATS LOCAL FORWARD   -4.2597  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16124  1.50955  1.53139  1.38767
+          1.38629  1.38629  1.38629  1.38629
+          0.03456  4.07546  4.07546  1.46634  0.26236  0.00000        *
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03456  4.07546  4.07546  1.46634  0.26236  1.09861  0.40547
+      4   3.20113  2.66655  3.24493  0.16155      4 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     41   0.12818  3.49033  2.87299  3.40262     41 - -
+          1.38629  1.38629  1.38629  1.38629
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+     42   3.02284  3.69821  0.10576  3.61463     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03456  4.07546  4.07546  1.46634  0.26236  1.09861  0.40547
+     43   0.12818  3.49033  2.87299  3.40262     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03456  4.07546  4.07546  1.46634  0.26236  1.09861  0.40547
+     44   0.12818  3.49033  2.87299  3.40262     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03456  4.07546  4.07546  1.46634  0.26236  1.09861  0.40547
+     45   3.55943  0.11610  3.60336  2.92009     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01743  4.05833        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_sixb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:26:43 2012
+NSEQ  8
+EFFN  3.558594
+CKSUM 2758897519
+STATS LOCAL MSV       -7.6565  0.71933
+STATS LOCAL VITERBI   -7.6277  0.71933
+STATS LOCAL FORWARD   -3.9158  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.10338  1.44505  1.58840  1.47724
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  0.00000        *
+      1   0.13267  3.45290  2.84891  3.36153      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+      2   0.13267  3.45290  2.84891  3.36153      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+      3   0.13267  3.45290  2.84891  3.36153      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+      4   3.16254  2.64208  3.20785  0.16721      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+      5   3.51660  0.12068  3.56245  2.88939      5 - -
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+      6   3.51660  0.12068  3.56245  2.88939      6 - -
+          1.38629  1.38629  1.38629  1.38629
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+     42   2.99754  3.66093  0.10946  3.57332     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     43   0.13267  3.45290  2.84891  3.36153     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     44   0.13267  3.45290  2.84891  3.36153     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     45   3.51660  0.12068  3.56245  2.88939     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01783  4.03576        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_sixc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:26:50 2012
+NSEQ  13
+EFFN  3.443604
+CKSUM 4173496295
+STATS LOCAL MSV       -7.6779  0.71933
+STATS LOCAL VITERBI   -7.6270  0.71933
+STATS LOCAL FORWARD   -4.2468  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.09130  1.57353  1.59959  1.36677
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  0.00000        *
+      1   0.13699  3.41821  2.82651  3.32349      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+      2   0.13699  3.41821  2.82651  3.32349      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+      3   0.13699  3.41821  2.82651  3.32349      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+      4   3.12708  2.61958  3.17375  0.17260      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+      5   3.12708  2.61958  3.17375  0.17260      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+      6   3.12708  2.61958  3.17375  0.17260      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+      7   3.12708  2.61958  3.17375  0.17260      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+      8   3.47678  0.12512  3.52437  2.86068      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+      9   0.13699  3.41821  2.82651  3.32349      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     10   0.13699  3.41821  2.82651  3.32349     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     11   3.47678  0.12512  3.52437  2.86068     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     12   2.97381  3.62611  0.11305  3.53480     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     13   0.13699  3.41821  2.82651  3.32349     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     14   3.12708  2.61958  3.17375  0.17260     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     15   2.97381  3.62611  0.11305  3.53480     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     16   2.97381  3.62611  0.11305  3.53480     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     17   0.13699  3.41821  2.82651  3.32349     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     18   3.12708  2.61958  3.17375  0.17260     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     19   0.13699  3.41821  2.82651  3.32349     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     20   3.12708  2.61958  3.17375  0.17260     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     21   3.47678  0.12512  3.52437  2.86068     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     22   3.12708  2.61958  3.17375  0.17260     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     23   0.13699  3.41821  2.82651  3.32349     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     24   2.97381  3.62611  0.11305  3.53480     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     25   2.97381  3.62611  0.11305  3.53480     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     26   3.47678  0.12512  3.52437  2.86068     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     27   3.12708  2.61958  3.17375  0.17260     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     28   3.47678  0.12512  3.52437  2.86068     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     29   3.47678  0.12512  3.52437  2.86068     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     30   3.12708  2.61958  3.17375  0.17260     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     31   0.13699  3.41821  2.82651  3.32349     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     32   3.12708  2.61958  3.17375  0.17260     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     33   0.13699  3.41821  2.82651  3.32349     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     34   1.39388  0.65071  2.27615  2.05938     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     35   3.47678  0.12512  3.52437  2.86068     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     36   2.97381  3.62611  0.11305  3.53480     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     37   0.13699  3.41821  2.82651  3.32349     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     38   3.12708  2.61958  3.17375  0.17260     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     39   2.97381  3.62611  0.11305  3.53480     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     40   0.13699  3.41821  2.82651  3.32349     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     41   0.13699  3.41821  2.82651  3.32349     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     42   2.97381  3.62611  0.11305  3.53480     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     43   0.13699  3.41821  2.82651  3.32349     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     44   0.13699  3.41821  2.82651  3.32349     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03608  4.03311  4.03311  1.46634  0.26236  1.09861  0.40547
+     45   3.47678  0.12512  3.52437  2.86068     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01820  4.01523        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_sixd_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:26:56 2012
+NSEQ  18
+EFFN  3.739746
+CKSUM 2077131438
+STATS LOCAL MSV       -7.3089  0.71933
+STATS LOCAL VITERBI   -7.8161  0.71933
+STATS LOCAL FORWARD   -4.1699  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.13317  1.60280  1.55991  1.32237
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  0.00000        *
+      1   0.12648  3.50496  2.88239  3.41868      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+      2   0.12648  3.50496  2.88239  3.41868      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+      3   0.12648  3.50496  2.88239  3.41868      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+      4   3.21631  2.67616  3.25951  0.15939      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+      5   3.21631  2.67616  3.25951  0.15939      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+      6   3.21631  2.67616  3.25951  0.15939      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+      7   3.21631  2.67616  3.25951  0.15939      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+      8   3.57612  0.11437  3.61930  2.93201      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+      9   0.12648  3.50496  2.88239  3.41868      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     10   0.12648  3.50496  2.88239  3.41868     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     11   3.57612  0.11437  3.61930  2.93201     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     12   3.03265  3.71270  0.10436  3.63069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     13   0.28094  3.03315  1.94829  2.91416     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     14   3.21631  2.67616  3.25951  0.15939     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     15   3.03265  3.71270  0.10436  3.63069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     16   3.03265  3.71270  0.10436  3.63069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     17   0.12648  3.50496  2.88239  3.41868     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     18   3.21631  2.67616  3.25951  0.15939     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     19   0.12648  3.50496  2.88239  3.41868     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     20   3.21631  2.67616  3.25951  0.15939     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     21   3.57612  0.11437  3.61930  2.93201     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     22   3.21631  2.67616  3.25951  0.15939     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     23   2.14675  2.21275  0.89986  1.00208     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     24   3.03265  3.71270  0.10436  3.63069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     25   3.03265  3.71270  0.10436  3.63069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     26   2.92927  2.02237  2.98433  0.26965     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     27   3.21631  2.67616  3.25951  0.15939     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     28   3.57612  0.11437  3.61930  2.93201     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     29   3.57612  0.11437  3.61930  2.93201     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     30   3.57612  0.11437  3.61930  2.93201     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     31   0.12648  3.50496  2.88239  3.41868     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     32   3.21631  2.67616  3.25951  0.15939     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     33   0.12648  3.50496  2.88239  3.41868     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     34   0.94678  2.19731  2.21189  0.93798     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     35   3.57612  0.11437  3.61930  2.93201     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     36   3.03265  3.71270  0.10436  3.63069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     37   0.12648  3.50496  2.88239  3.41868     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     38   3.21631  2.67616  3.25951  0.15939     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     39   3.03265  3.71270  0.10436  3.63069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     40   0.12648  3.50496  2.88239  3.41868     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     41   0.12648  3.50496  2.88239  3.41868     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     42   3.03265  3.71270  0.10436  3.63069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     43   0.12648  3.50496  2.88239  3.41868     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     44   0.12648  3.50496  2.88239  3.41868     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03425  4.08425  4.08425  1.46634  0.26236  1.09861  0.40547
+     45   3.57612  0.11437  3.61930  2.93201     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01727  4.06727        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_ten_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:27:21 2012
+NSEQ  22
+EFFN  3.236084
+CKSUM 2896313313
+STATS LOCAL MSV       -8.1273  0.71932
+STATS LOCAL VITERBI   -7.6160  0.71932
+STATS LOCAL FORWARD   -3.9033  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.53686  1.12476  1.25556  1.74127
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  0.00000        *
+      1   1.49846  0.59962  2.29674  2.06420      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+      2   0.14567  3.35213  2.78361  3.25115      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+      3   0.14567  3.35213  2.78361  3.25115      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+      4   3.40067  0.13415  3.45149  2.80532      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+      5   3.06030  2.57712  3.10954  0.18331      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+      6   3.40067  0.13415  3.45149  2.80532      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+      7   3.40067  0.13415  3.45149  2.80532      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+      8   3.40067  0.13415  3.45149  2.80532      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+      9   0.14567  3.35213  2.78361  3.25115      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     10   2.92780  3.55913  0.12034  3.46085     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     11   3.40067  0.13415  3.45149  2.80532     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     12   2.92780  3.55913  0.12034  3.46085     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     13   0.14567  3.35213  2.78361  3.25115     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     14   3.06030  2.57712  3.10954  0.18331     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     15   2.92780  3.55913  0.12034  3.46085     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     16   2.92780  3.55913  0.12034  3.46085     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     17   0.14567  3.35213  2.78361  3.25115     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     18   3.06030  2.57712  3.10954  0.18331     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     19   2.92780  3.55913  0.12034  3.46085     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     20   3.40067  0.13415  3.45149  2.80532     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     21   3.40067  0.13415  3.45149  2.80532     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     22   3.06030  2.57712  3.10954  0.18331     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     23   3.40067  0.13415  3.45149  2.80532     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     24   2.92780  3.55913  0.12034  3.46085     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     25   2.92780  3.55913  0.12034  3.46085     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     26   3.40067  0.13415  3.45149  2.80532     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     27   3.06030  2.57712  3.10954  0.18331     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     28   3.40067  0.13415  3.45149  2.80532     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     29   2.92780  3.55913  0.12034  3.46085     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     30   3.40067  0.13415  3.45149  2.80532     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     31   2.92780  3.55913  0.12034  3.46085     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     32   3.40067  0.13415  3.45149  2.80532     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     33   3.40067  0.13415  3.45149  2.80532     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     34   3.06030  2.57712  3.10954  0.18331     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     35   3.40067  0.13415  3.45149  2.80532     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     36   2.92780  3.55913  0.12034  3.46085     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     37   0.14567  3.35213  2.78361  3.25115     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     38   3.06030  2.57712  3.10954  0.18331     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     39   2.92780  3.55913  0.12034  3.46085     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     40   0.14567  3.35213  2.78361  3.25115     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     41   0.14567  3.35213  2.78361  3.25115     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     42   2.92780  3.55913  0.12034  3.46085     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     43   2.92780  3.55913  0.12034  3.46085     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     44   0.14567  3.35213  2.78361  3.25115     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     45   3.40067  0.13415  3.45149  2.80532     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01892  3.97708        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_thirteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:28:05 2012
+NSEQ  8
+EFFN  3.175781
+CKSUM 2342198515
+STATS LOCAL MSV       -8.1781  0.71931
+STATS LOCAL VITERBI   -7.7853  0.71931
+STATS LOCAL FORWARD   -4.2608  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21574  1.40301  1.31193  1.66943
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  0.00000        *
+      1   0.14843  3.33206  2.77050  3.22920      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      2   0.14843  3.33206  2.77050  3.22920      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      3   0.14843  3.33206  2.77050  3.22920      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      4   3.37748  0.13704  3.42926  2.78832      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      5   3.04021  2.56430  3.09020  0.18668      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      6   3.37748  0.13704  3.42926  2.78832      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      7   3.04021  2.56430  3.09020  0.18668      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      8   3.37748  0.13704  3.42926  2.78832      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      9   0.14843  3.33206  2.77050  3.22920      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     10   0.14843  3.33206  2.77050  3.22920     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     11   3.37748  0.13704  3.42926  2.78832     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     12   2.91360  3.53861  0.12268  3.43825     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     13   0.14843  3.33206  2.77050  3.22920     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     14   3.04021  2.56430  3.09020  0.18668     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     15   2.91360  3.53861  0.12268  3.43825     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     16   2.91360  3.53861  0.12268  3.43825     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     17   0.14843  3.33206  2.77050  3.22920     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     18   3.04021  2.56430  3.09020  0.18668     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     19   2.91360  3.53861  0.12268  3.43825     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     20   3.37748  0.13704  3.42926  2.78832     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     21   3.37748  0.13704  3.42926  2.78832     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     22   3.04021  2.56430  3.09020  0.18668     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     23   3.37748  0.13704  3.42926  2.78832     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     24   2.91360  3.53861  0.12268  3.43825     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     25   2.91360  3.53861  0.12268  3.43825     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     26   3.37748  0.13704  3.42926  2.78832     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     27   3.04021  2.56430  3.09020  0.18668     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     28   3.37748  0.13704  3.42926  2.78832     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     29   2.91360  3.53861  0.12268  3.43825     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     30   0.14843  3.33206  2.77050  3.22920     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     31   2.91360  3.53861  0.12268  3.43825     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     32   0.14843  3.33206  2.77050  3.22920     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     33   0.14843  3.33206  2.77050  3.22920     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     34   3.04021  2.56430  3.09020  0.18668     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     35   3.37748  0.13704  3.42926  2.78832     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     36   2.91360  3.53861  0.12268  3.43825     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     37   0.14843  3.33206  2.77050  3.22920     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     38   3.04021  2.56430  3.09020  0.18668     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     39   2.91360  3.53861  0.12268  3.43825     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     40   0.14843  3.33206  2.77050  3.22920     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     41   0.14843  3.33206  2.77050  3.22920     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     42   2.91360  3.53861  0.12268  3.43825     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     43   2.91360  3.53861  0.12268  3.43825     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     44   0.14843  3.33206  2.77050  3.22920     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     45   3.37748  0.13704  3.42926  2.78832     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01914  3.96571        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:26:06 2012
+NSEQ  6
+EFFN  3.249023
+CKSUM 954103482
+STATS LOCAL MSV       -8.0739  0.71932
+STATS LOCAL VITERBI   -7.8238  0.71932
+STATS LOCAL FORWARD   -4.1109  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47195  1.61868  1.19247  1.31344
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  0.00000        *
+      1   3.06457  2.57984  3.11364  0.18260      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      2   3.06457  2.57984  3.11364  0.18260      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      3   2.93080  3.56347  0.11985  3.46564      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      4   3.40558  0.13354  3.45619  2.80891      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      5   3.06457  2.57984  3.11364  0.18260      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      6   3.06457  2.57984  3.11364  0.18260      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      7   3.06457  2.57984  3.11364  0.18260      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      8   3.40558  0.13354  3.45619  2.80891      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      9   0.14509  3.35639  2.78639  3.25580      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     10   2.93080  3.56347  0.11985  3.46564     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     11   3.40558  0.13354  3.45619  2.80891     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     12   2.93080  3.56347  0.11985  3.46564     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     13   0.14509  3.35639  2.78639  3.25580     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     14   3.06457  2.57984  3.11364  0.18260     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     15   2.93080  3.56347  0.11985  3.46564     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     16   2.93080  3.56347  0.11985  3.46564     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     17   0.14509  3.35639  2.78639  3.25580     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     18   3.06457  2.57984  3.11364  0.18260     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     19   2.93080  3.56347  0.11985  3.46564     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     20   3.06457  2.57984  3.11364  0.18260     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     21   3.40558  0.13354  3.45619  2.80891     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     22   3.06457  2.57984  3.11364  0.18260     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     23   3.06457  2.57984  3.11364  0.18260     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     24   2.93080  3.56347  0.11985  3.46564     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     25   2.93080  3.56347  0.11985  3.46564     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     26   3.40558  0.13354  3.45619  2.80891     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     27   3.06457  2.57984  3.11364  0.18260     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     28   3.40558  0.13354  3.45619  2.80891     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     29   2.93080  3.56347  0.11985  3.46564     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     30   0.14509  3.35639  2.78639  3.25580     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     31   0.14509  3.35639  2.78639  3.25580     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     32   3.40558  0.13354  3.45619  2.80891     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     33   0.14509  3.35639  2.78639  3.25580     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     34   0.14509  3.35639  2.78639  3.25580     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     35   3.06457  2.57984  3.11364  0.18260     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     36   2.93080  3.56347  0.11985  3.46564     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     37   0.14509  3.35639  2.78639  3.25580     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     38   3.06457  2.57984  3.11364  0.18260     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     39   2.93080  3.56347  0.11985  3.46564     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     40   0.14509  3.35639  2.78639  3.25580     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     41   0.14509  3.35639  2.78639  3.25580     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     42   2.93080  3.56347  0.11985  3.46564     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     43   2.93080  3.56347  0.11985  3.46564     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     44   2.93080  3.56347  0.11985  3.46564     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     45   3.40558  0.13354  3.45619  2.80891     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01887  3.97950        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_twelve_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:27:55 2012
+NSEQ  74
+EFFN  3.410034
+CKSUM 388750452
+STATS LOCAL MSV       -7.4871  0.71933
+STATS LOCAL VITERBI   -7.6504  0.71933
+STATS LOCAL FORWARD   -4.1874  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28425  1.46318  1.36431  1.44356
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  0.00000        *
+      1   0.13831  3.40783  2.81980  3.31211      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+      2   0.13831  3.40783  2.81980  3.31211      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+      3   0.13831  3.40783  2.81980  3.31211      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+      4   3.25133  0.17525  3.30615  2.46070      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+      5   3.11652  2.61288  3.16360  0.17424      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+      6   3.11652  2.61288  3.16360  0.17424      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+      7   3.11652  2.61288  3.16360  0.17424      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+      8   3.46484  0.12649  3.51294  2.85204      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+      9   0.13831  3.40783  2.81980  3.31211      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     10   2.96666  3.61565  0.11415  3.52323     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     11   3.46484  0.12649  3.51294  2.85204     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     12   0.13831  3.40783  2.81980  3.31211     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     13   0.13831  3.40783  2.81980  3.31211     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     14   3.11652  2.61288  3.16360  0.17424     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     15   2.96666  3.61565  0.11415  3.52323     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     16   2.96666  3.61565  0.11415  3.52323     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     17   0.13831  3.40783  2.81980  3.31211     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     18   3.11652  2.61288  3.16360  0.17424     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     19   2.96666  3.61565  0.11415  3.52323     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     20   3.11652  2.61288  3.16360  0.17424     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     21   3.46484  0.12649  3.51294  2.85204     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     22   3.11652  2.61288  3.16360  0.17424     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     23   3.11652  2.61288  3.16360  0.17424     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     24   2.96666  3.61565  0.11415  3.52323     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     25   2.96666  3.61565  0.11415  3.52323     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     26   3.46484  0.12649  3.51294  2.85204     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     27   3.11652  2.61288  3.16360  0.17424     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     28   3.46484  0.12649  3.51294  2.85204     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     29   0.41203  2.75544  1.60231  2.62160     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     30   3.46484  0.12649  3.51294  2.85204     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     31   2.96666  3.61565  0.11415  3.52323     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     32   3.46484  0.12649  3.51294  2.85204     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     33   0.13831  3.40783  2.81980  3.31211     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     34   2.31167  2.32835  2.73359  0.30319     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     35   3.46484  0.12649  3.51294  2.85204     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     36   2.96666  3.61565  0.11415  3.52323     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     37   0.16646  3.30237  2.57918  3.20130     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     38   3.11652  2.61288  3.16360  0.17424     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     39   2.96666  3.61565  0.11415  3.52323     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     40   0.13831  3.40783  2.81980  3.31211     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     41   0.13831  3.40783  2.81980  3.31211     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     42   2.96666  3.61565  0.11415  3.52323     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     43   2.96666  3.61565  0.11415  3.52323     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     44   0.13831  3.40783  2.81980  3.31211     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02714  4.02714  1.46634  0.26236  1.09861  0.40547
+     45   3.46484  0.12649  3.51294  2.85204     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01832  4.00916        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_twoa_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:25:36 2012
+NSEQ  24
+EFFN  3.858398
+CKSUM 3088050842
+STATS LOCAL MSV       -7.0905  0.71932
+STATS LOCAL VITERBI   -7.7638  0.71932
+STATS LOCAL FORWARD   -3.7065  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.35209  1.39088  1.23234  1.60528
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  0.00000        *
+      1   3.61308  0.11065  3.65457  2.95832      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+      2   0.12278  3.53742  2.90323  3.45435      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+      3   0.12278  3.53742  2.90323  3.45435      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+      4   2.85962  0.34778  2.92534  1.69931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+      5   3.02517  2.16151  3.07670  0.23548      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+      6   3.25017  2.69764  3.29205  0.15468      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+      7   3.25017  2.69764  3.29205  0.15468      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+      8   3.61308  0.11065  3.65457  2.95832      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+      9   0.12278  3.53742  2.90323  3.45435      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     10   3.05426  3.74470  0.10134  3.66619     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     11   3.61308  0.11065  3.65457  2.95832     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     12   3.05426  3.74470  0.10134  3.66619     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     13   0.12278  3.53742  2.90323  3.45435     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     14   2.56518  1.23160  2.63342  0.58082     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     15   3.05426  3.74470  0.10134  3.66619     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     16   3.05426  3.74470  0.10134  3.66619     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     17   0.12278  3.53742  2.90323  3.45435     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     18   3.25017  2.69764  3.29205  0.15468     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     19   3.05426  3.74470  0.10134  3.66619     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     20   2.87164  1.85703  2.92932  0.30948     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     21   3.61308  0.11065  3.65457  2.95832     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     22   3.25017  2.69764  3.29205  0.15468     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     23   3.61308  0.11065  3.65457  2.95832     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     24   3.05426  3.74470  0.10134  3.66619     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     25   3.05426  3.74470  0.10134  3.66619     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     26   3.38961  0.15768  3.43962  2.52474     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     27   3.25017  2.69764  3.29205  0.15468     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     28   2.98238  0.28720  3.04518  1.88795     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     29   2.20598  2.99459  0.26627  2.60951     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     30   0.63005  2.64466  1.15619  2.50444     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     31   0.20489  3.24864  2.26976  3.14424     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     32   3.61308  0.11065  3.65457  2.95832     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     33   0.12278  3.53742  2.90323  3.45435     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     34   0.12278  3.53742  2.90323  3.45435     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     35   3.61308  0.11065  3.65457  2.95832     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     36   2.69512  3.58668  0.13413  3.49662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     37   0.12278  3.53742  2.90323  3.45435     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     38   3.25017  2.69764  3.29205  0.15468     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     39   3.05426  3.74470  0.10134  3.66619     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     40   0.12278  3.53742  2.90323  3.45435     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     41   0.12278  3.53742  2.90323  3.45435     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     42   3.05426  3.74470  0.10134  3.66619     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     43   3.05426  3.74470  0.10134  3.66619     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     44   3.05426  3.74470  0.10134  3.66619     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03357  4.10403  4.10403  1.46634  0.26236  1.09861  0.40547
+     45   3.61308  0.11065  3.65457  2.95832     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01693  4.08739        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_twob_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:25:43 2012
+NSEQ  8
+EFFN  3.222656
+CKSUM 2547926137
+STATS LOCAL MSV       -7.7534  0.71932
+STATS LOCAL VITERBI   -7.7335  0.71932
+STATS LOCAL FORWARD   -4.0829  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40323  1.39104  1.31591  1.43906
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  0.00000        *
+      1   3.39555  0.13478  3.44658  2.80157      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      2   0.14627  3.34770  2.78072  3.24630      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      3   0.14627  3.34770  2.78072  3.24630      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      4   3.05586  2.57429  3.10526  0.18405      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      5   3.05586  2.57429  3.10526  0.18405      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      6   3.05586  2.57429  3.10526  0.18405      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      7   3.05586  2.57429  3.10526  0.18405      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      8   3.39555  0.13478  3.44658  2.80157      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      9   0.14627  3.34770  2.78072  3.24630      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     10   2.92468  3.55461  0.12085  3.45586     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     11   3.39555  0.13478  3.44658  2.80157     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     12   2.92468  3.55461  0.12085  3.45586     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     13   0.14627  3.34770  2.78072  3.24630     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     14   3.39555  0.13478  3.44658  2.80157     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     15   2.92468  3.55461  0.12085  3.45586     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     16   2.92468  3.55461  0.12085  3.45586     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     17   0.14627  3.34770  2.78072  3.24630     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     18   3.05586  2.57429  3.10526  0.18405     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     19   0.14627  3.34770  2.78072  3.24630     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     20   3.05586  2.57429  3.10526  0.18405     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     21   3.39555  0.13478  3.44658  2.80157     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     22   3.05586  2.57429  3.10526  0.18405     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     23   3.05586  2.57429  3.10526  0.18405     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     24   2.92468  3.55461  0.12085  3.45586     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     25   2.92468  3.55461  0.12085  3.45586     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     26   3.39555  0.13478  3.44658  2.80157     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     27   3.05586  2.57429  3.10526  0.18405     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     28   3.39555  0.13478  3.44658  2.80157     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     29   2.92468  3.55461  0.12085  3.45586     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     30   0.14627  3.34770  2.78072  3.24630     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     31   2.92468  3.55461  0.12085  3.45586     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     32   3.39555  0.13478  3.44658  2.80157     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     33   0.14627  3.34770  2.78072  3.24630     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     34   3.39555  0.13478  3.44658  2.80157     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     35   3.39555  0.13478  3.44658  2.80157     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     36   3.05586  2.57429  3.10526  0.18405     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     37   0.14627  3.34770  2.78072  3.24630     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     38   3.05586  2.57429  3.10526  0.18405     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     39   2.92468  3.55461  0.12085  3.45586     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     40   0.14627  3.34770  2.78072  3.24630     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     41   0.14627  3.34770  2.78072  3.24630     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     42   2.92468  3.55461  0.12085  3.45586     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     43   2.92468  3.55461  0.12085  3.45586     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     44   2.92468  3.55461  0.12085  3.45586     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     45   3.39555  0.13478  3.44658  2.80157     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01897  3.97456        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_twoc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:25:48 2012
+NSEQ  25
+EFFN  3.573608
+CKSUM 3334689644
+STATS LOCAL MSV       -7.4338  0.71933
+STATS LOCAL VITERBI   -7.6275  0.71933
+STATS LOCAL FORWARD   -3.9955  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54120  1.41879  1.21665  1.39575
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  0.00000        *
+      1   3.52168  0.12012  3.56730  2.89304      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+      2   0.13213  3.45734  2.85176  3.36640      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+      3   0.13213  3.45734  2.85176  3.36640      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+      4   3.52168  0.12012  3.56730  2.89304      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+      5   3.16710  2.64497  3.21222  0.16653      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+      6   3.16710  2.64497  3.21222  0.16653      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+      7   3.16710  2.64497  3.21222  0.16653      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+      8   3.52168  0.12012  3.56730  2.89304      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+      9   0.13213  3.45734  2.85176  3.36640      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     10   3.00056  3.66536  0.10901  3.57823     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     11   2.46586  0.76758  2.53784  0.98915     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     12   3.00056  3.66536  0.10901  3.57823     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     13   0.13213  3.45734  2.85176  3.36640     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     14   3.16710  2.64497  3.21222  0.16653     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     15   3.00056  3.66536  0.10901  3.57823     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     16   3.00056  3.66536  0.10901  3.57823     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     17   0.13213  3.45734  2.85176  3.36640     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     18   3.16710  2.64497  3.21222  0.16653     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     19   0.21940  3.16112  2.23213  3.05081     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     20   3.16710  2.64497  3.21222  0.16653     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     21   3.52168  0.12012  3.56730  2.89304     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     22   3.16710  2.64497  3.21222  0.16653     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     23   3.16710  2.64497  3.21222  0.16653     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     24   3.00056  3.66536  0.10901  3.57823     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     25   3.00056  3.66536  0.10901  3.57823     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     26   3.52168  0.12012  3.56730  2.89304     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     27   3.16710  2.64497  3.21222  0.16653     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     28   3.52168  0.12012  3.56730  2.89304     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     29   2.32922  3.31349  0.19164  3.20305     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     30   2.32922  3.31349  0.19164  3.20305     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     31   3.00056  3.66536  0.10901  3.57823     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     32   3.52168  0.12012  3.56730  2.89304     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     33   0.13213  3.45734  2.85176  3.36640     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     34   3.52168  0.12012  3.56730  2.89304     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     35   3.52168  0.12012  3.56730  2.89304     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     36   3.16710  2.64497  3.21222  0.16653     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     37   2.31883  2.50191  0.47001  1.63638     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     38   3.16710  2.64497  3.21222  0.16653     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     39   3.00056  3.66536  0.10901  3.57823     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     40   0.13213  3.45734  2.85176  3.36640     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     41   0.13213  3.45734  2.85176  3.36640     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     42   3.00056  3.66536  0.10901  3.57823     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     43   3.00056  3.66536  0.10901  3.57823     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     44   3.00056  3.66536  0.10901  3.57823     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03525  4.05588  4.05588  1.46634  0.26236  1.09861  0.40547
+     45   3.52168  0.12012  3.56730  2.89304     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01778  4.03841        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Alveolata_58S_start_twod_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 13:25:53 2012
+NSEQ  12
+EFFN  3.430664
+CKSUM 3640048188
+STATS LOCAL MSV       -7.2425  0.71931
+STATS LOCAL VITERBI   -7.5607  0.71931
+STATS LOCAL FORWARD   -3.7783  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.41933  1.31164  1.25837  1.58655
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  0.00000        *
+      1   3.47220  0.12564  3.51998  2.85737      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+      2   0.13749  3.41422  2.82393  3.31912      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+      3   0.13749  3.41422  2.82393  3.31912      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+      4   3.47220  0.12564  3.51998  2.85737      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+      5   3.12302  2.61701  3.16985  0.17323      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+      6   3.12302  2.61701  3.16985  0.17323      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+      7   3.12302  2.61701  3.16985  0.17323      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+      8   3.47220  0.12564  3.51998  2.85737      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+      9   0.13749  3.41422  2.82393  3.31912      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     10   2.97107  3.62210  0.11347  3.53036     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     11   3.47220  0.12564  3.51998  2.85737     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     12   2.97107  3.62210  0.11347  3.53036     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     13   0.13749  3.41422  2.82393  3.31912     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     14   3.47220  0.12564  3.51998  2.85737     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     15   2.97107  3.62210  0.11347  3.53036     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     16   2.97107  3.62210  0.11347  3.53036     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     17   0.13749  3.41422  2.82393  3.31912     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     18   3.12302  2.61701  3.16985  0.17323     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     19   0.13749  3.41422  2.82393  3.31912     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     20   3.12302  2.61701  3.16985  0.17323     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     21   3.47220  0.12564  3.51998  2.85737     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     22   3.12302  2.61701  3.16985  0.17323     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     23   2.60677  1.53439  2.67234  0.44387     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     24   2.97107  3.62210  0.11347  3.53036     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     25   2.97107  3.62210  0.11347  3.53036     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     26   3.47220  0.12564  3.51998  2.85737     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     27   3.12302  2.61701  3.16985  0.17323     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     28   3.47220  0.12564  3.51998  2.85737     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     29   1.96943  3.04589  0.27579  2.91993     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     30   2.97107  3.62210  0.11347  3.53036     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     31   2.97107  3.62210  0.11347  3.53036     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     32   3.47220  0.12564  3.51998  2.85737     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     33   0.13749  3.41422  2.82393  3.31912     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     34   3.47220  0.12564  3.51998  2.85737     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     35   3.47220  0.12564  3.51998  2.85737     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     36   0.55266  2.36283  2.26915  1.48267     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     37   0.13749  3.41422  2.82393  3.31912     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     38   3.12302  2.61701  3.16985  0.17323     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     39   2.97107  3.62210  0.11347  3.53036     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     40   0.13749  3.41422  2.82393  3.31912     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     41   0.13749  3.41422  2.82393  3.31912     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     42   2.97107  3.62210  0.11347  3.53036     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     43   2.97107  3.62210  0.11347  3.53036     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     44   2.97107  3.62210  0.11347  3.53036     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03081  4.03081  1.46634  0.26236  1.09861  0.40547
+     45   3.47220  0.12564  3.51998  2.85737     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01825  4.01289        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_elevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:41:31 2012
+NSEQ  12
+EFFN  3.272461
+CKSUM 1146151681
+STATS LOCAL MSV       -8.0339  0.71932
+STATS LOCAL VITERBI   -7.7952  0.71932
+STATS LOCAL FORWARD   -4.0279  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47342  1.38843  1.32140  1.36794
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  0.00000        *
+      1   3.07227  2.58474  3.12105  0.18133      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+      2   3.07227  2.58474  3.12105  0.18133      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+      3   3.07227  2.58474  3.12105  0.18133      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+      4   2.93618  3.57128  0.11898  3.47424      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+      5   3.41441  0.13246  3.46466  2.81537      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+      6   3.07227  2.58474  3.12105  0.18133      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+      7   3.41441  0.13246  3.46466  2.81537      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+      8   3.41441  0.13246  3.46466  2.81537      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+      9   3.07227  2.58474  3.12105  0.18133      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     10   2.93618  3.57128  0.11898  3.47424     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     11   0.14405  3.36405  2.79138  3.26418     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     12   2.93618  3.57128  0.11898  3.47424     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     13   0.14405  3.36405  2.79138  3.26418     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     14   3.07227  2.58474  3.12105  0.18133     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     15   3.41441  0.13246  3.46466  2.81537     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     16   2.93618  3.57128  0.11898  3.47424     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     17   2.37276  3.26979  0.19096  3.15593     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     18   2.93618  3.57128  0.11898  3.47424     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     19   3.07227  2.58474  3.12105  0.18133     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     20   2.93618  3.57128  0.11898  3.47424     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     21   0.14405  3.36405  2.79138  3.26418     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     22   2.93618  3.57128  0.11898  3.47424     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     23   2.93618  3.57128  0.11898  3.47424     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     24   3.41441  0.13246  3.46466  2.81537     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     25   3.41441  0.13246  3.46466  2.81537     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     26   0.14405  3.36405  2.79138  3.26418     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     27   3.07227  2.58474  3.12105  0.18133     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     28   3.41441  0.13246  3.46466  2.81537     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     29   3.41441  0.13246  3.46466  2.81537     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     30   2.93618  3.57128  0.11898  3.47424     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     31   3.41441  0.13246  3.46466  2.81537     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     32   3.41441  0.13246  3.46466  2.81537     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     33   2.93618  3.57128  0.11898  3.47424     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     34   0.14405  3.36405  2.79138  3.26418     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     35   0.14405  3.36405  2.79138  3.26418     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     36   3.07227  2.58474  3.12105  0.18133     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     37   3.07227  2.58474  3.12105  0.18133     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     38   3.07227  2.58474  3.12105  0.18133     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     39   0.14405  3.36405  2.79138  3.26418     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     40   0.14405  3.36405  2.79138  3.26418     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     41   2.93618  3.57128  0.11898  3.47424     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     42   3.41441  0.13246  3.46466  2.81537     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     43   0.14405  3.36405  2.79138  3.26418     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     44   3.07227  2.58474  3.12105  0.18133     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     45   0.14405  3.36405  2.79138  3.26418     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01879  3.98387        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_elevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:41:38 2012
+NSEQ  7
+EFFN  3.749512
+CKSUM 2366441104
+STATS LOCAL MSV       -7.0652  0.71931
+STATS LOCAL VITERBI   -7.5685  0.71931
+STATS LOCAL FORWARD   -4.4492  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.38524  1.47412  1.40056  1.29354
+          1.38629  1.38629  1.38629  1.38629
+          0.03419  4.08589  4.08589  1.46634  0.26236  0.00000        *
+      1   1.79493  1.75931  2.34666  0.56914      1 - -
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+     42   3.57922  0.11406  3.62226  2.93422     42 - -
+          1.38629  1.38629  1.38629  1.38629
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+     43   0.12616  3.50768  2.88414  3.42167     43 - -
+          1.38629  1.38629  1.38629  1.38629
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+     44   3.21913  2.67796  3.26222  0.15899     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03419  4.08589  4.08589  1.46634  0.26236  1.09861  0.40547
+     45   0.12616  3.50768  2.88414  3.42167     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01724  4.06894        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_elevenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:41:44 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4069155507
+STATS LOCAL MSV       -7.5533  0.72843
+STATS LOCAL VITERBI   -8.3163  0.72843
+STATS LOCAL FORWARD   -3.8936  0.72843
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45663  1.50989  1.37466  1.22718
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
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+      2   2.81865  0.23582  2.88868  2.35662      2 - -
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+      3   2.57915  2.25909  2.64442  0.28946      3 - -
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+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_elevend_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:41:50 2012
+NSEQ  6
+EFFN  3.483398
+CKSUM 493634052
+STATS LOCAL MSV       -7.4999  0.71933
+STATS LOCAL VITERBI   -7.8190  0.71933
+STATS LOCAL FORWARD   -4.2484  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28412  1.78988  1.37130  1.19617
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  0.00000        *
+      1   3.13947  2.62745  3.18567  0.17069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+      2   3.13947  2.62745  3.18567  0.17069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+      3   0.38809  2.59438  2.41106  1.84999      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+      4   3.13947  2.62745  3.18567  0.17069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+      5   2.98216  3.63834  0.11177  3.54832      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+      6   2.98216  3.63834  0.11177  3.54832      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+      7   3.49075  0.12354  3.53772  2.87077      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+      8   3.49075  0.12354  3.53772  2.87077      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+      9   3.13947  2.62745  3.18567  0.17069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     10   2.98216  3.63834  0.11177  3.54832     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     11   0.13545  3.43036  2.83437  3.33682     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     12   0.13545  3.43036  2.83437  3.33682     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     13   0.13545  3.43036  2.83437  3.33682     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     14   3.13947  2.62745  3.18567  0.17069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     15   3.13947  2.62745  3.18567  0.17069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     16   2.98216  3.63834  0.11177  3.54832     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     17   2.98216  3.63834  0.11177  3.54832     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     18   0.13545  3.43036  2.83437  3.33682     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     19   3.13947  2.62745  3.18567  0.17069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     20   2.98216  3.63834  0.11177  3.54832     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     21   3.13947  2.62745  3.18567  0.17069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     22   2.98216  3.63834  0.11177  3.54832     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     23   0.13545  3.43036  2.83437  3.33682     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     24   2.76674  1.82415  2.82709  0.33325     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     25   2.98216  3.63834  0.11177  3.54832     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     26   0.13545  3.43036  2.83437  3.33682     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     27   3.13947  2.62745  3.18567  0.17069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     28   3.49075  0.12354  3.53772  2.87077     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     29   3.49075  0.12354  3.53772  2.87077     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     30   2.98216  3.63834  0.11177  3.54832     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     31   3.49075  0.12354  3.53772  2.87077     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     32   3.13947  2.62745  3.18567  0.17069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     33   2.98216  3.63834  0.11177  3.54832     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     34   0.13545  3.43036  2.83437  3.33682     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     35   0.13545  3.43036  2.83437  3.33682     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     36   3.13947  2.62745  3.18567  0.17069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     37   3.13947  2.62745  3.18567  0.17069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     38   3.13947  2.62745  3.18567  0.17069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     39   0.13545  3.43036  2.83437  3.33682     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     40   0.13545  3.43036  2.83437  3.33682     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     41   2.98216  3.63834  0.11177  3.54832     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     42   3.49075  0.12354  3.53772  2.87077     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     43   0.13545  3.43036  2.83437  3.33682     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     44   3.13947  2.62745  3.18567  0.17069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03582  4.04013  4.04013  1.46634  0.26236  1.09861  0.40547
+     45   0.13545  3.43036  2.83437  3.33682     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01807  4.02238        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:40:33 2012
+NSEQ  4
+EFFN  3.371094
+CKSUM 2728876017
+STATS LOCAL MSV       -7.6702  0.71933
+STATS LOCAL VITERBI   -7.7190  0.71933
+STATS LOCAL FORWARD   -3.9488  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.14299  1.32265  1.60290  1.54461
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  0.00000        *
+      1   3.10416  2.60503  3.15172  0.17619      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+      2   3.10416  2.60503  3.15172  0.17619      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+      3   3.10416  2.60503  3.15172  0.17619      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+      4   2.95822  3.60333  0.11547  3.50963      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+      5   3.45082  0.12812  3.49952  2.84187      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+      6   0.13988  3.39564  2.81190  3.29876      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+      7   3.45082  0.12812  3.49952  2.84187      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+      8   3.45082  0.12812  3.49952  2.84187      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+      9   3.10416  2.60503  3.15172  0.17619      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     10   2.95822  3.60333  0.11547  3.50963     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     11   0.13988  3.39564  2.81190  3.29876     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     12   0.13988  3.39564  2.81190  3.29876     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     13   3.45082  0.12812  3.49952  2.84187     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     14   0.97314  2.14888  2.16446  0.93987     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     15   3.45082  0.12812  3.49952  2.84187     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     16   0.13988  3.39564  2.81190  3.29876     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     17   0.13988  3.39564  2.81190  3.29876     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     18   2.95822  3.60333  0.11547  3.50963     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     19   3.45082  0.12812  3.49952  2.84187     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     20   0.13988  3.39564  2.81190  3.29876     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     21   0.13988  3.39564  2.81190  3.29876     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     22   2.95822  3.60333  0.11547  3.50963     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     23   0.13988  3.39564  2.81190  3.29876     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     24   3.10416  2.60503  3.15172  0.17619     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     25   2.95822  3.60333  0.11547  3.50963     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     26   0.13988  3.39564  2.81190  3.29876     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     27   3.45082  0.12812  3.49952  2.84187     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     28   3.45082  0.12812  3.49952  2.84187     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     29   3.45082  0.12812  3.49952  2.84187     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     30   2.95822  3.60333  0.11547  3.50963     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     31   3.45082  0.12812  3.49952  2.84187     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     32   3.10416  2.60503  3.15172  0.17619     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     33   2.95822  3.60333  0.11547  3.50963     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     34   0.13988  3.39564  2.81190  3.29876     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     35   0.13988  3.39564  2.81190  3.29876     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     36   3.45082  0.12812  3.49952  2.84187     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     37   3.10416  2.60503  3.15172  0.17619     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     38   3.10416  2.60503  3.15172  0.17619     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     39   0.13988  3.39564  2.81190  3.29876     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     40   0.13988  3.39564  2.81190  3.29876     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     41   2.95822  3.60333  0.11547  3.50963     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     42   3.45082  0.12812  3.49952  2.84187     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     43   0.13988  3.39564  2.81190  3.29876     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     44   3.10416  2.60503  3.15172  0.17619     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     45   0.13988  3.39564  2.81190  3.29876     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01845  4.00206        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:40:26 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 998262845
+STATS LOCAL MSV       -7.6891  0.73003
+STATS LOCAL VITERBI   -8.4068  0.73003
+STATS LOCAL FORWARD   -3.2433  0.73003
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11611  1.39855  1.45506  1.64970
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.15554  1.00938  2.23102  0.88601      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.15554  1.00938  2.23102  0.88601     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.15554  1.00938  2.23102  0.88601     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.92825  2.28391  0.95698  2.13014     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_fourteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:42:14 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 551182428
+STATS LOCAL MSV       -7.6363  0.72784
+STATS LOCAL VITERBI   -8.3274  0.72784
+STATS LOCAL FORWARD   -3.4964  0.72784
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.19067  1.40884  1.42869  1.55148
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_ninea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:41:00 2012
+NSEQ  7
+EFFN  3.790527
+CKSUM 4206231787
+STATS LOCAL MSV       -7.2724  0.71933
+STATS LOCAL VITERBI   -7.6144  0.71933
+STATS LOCAL FORWARD   -4.2349  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.36808  1.51781  1.52107  1.17852
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  0.00000        *
+      1   0.89002  1.69049  2.09997  1.26421      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+      2   2.66645  0.48139  2.73592  1.39537      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+      3   2.88838  1.91919  2.94521  0.29435      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+      4   2.65817  1.47680  2.72315  0.45273      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+      5   3.23093  2.68543  3.27356  0.15734      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+      6   3.23093  2.68543  3.27356  0.15734      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+      7   3.59213  0.11274  3.63458  2.94342      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+      8   3.59213  0.11274  3.63458  2.94342      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+      9   3.23093  2.68543  3.27356  0.15734      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     10   3.04202  3.72657  0.10304  3.64608     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     11   0.12486  3.51901  2.89141  3.43411     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     12   3.04202  3.72657  0.10304  3.64608     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     13   0.12486  3.51901  2.89141  3.43411     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     14   3.23093  2.68543  3.27356  0.15734     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     15   3.04202  3.72657  0.10304  3.64608     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     16   3.23093  2.68543  3.27356  0.15734     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     17   0.12486  3.51901  2.89141  3.43411     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     18   3.59213  0.11274  3.63458  2.94342     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     19   3.04202  3.72657  0.10304  3.64608     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     20   0.12486  3.51901  2.89141  3.43411     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     21   3.04202  3.72657  0.10304  3.64608     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     22   3.04202  3.72657  0.10304  3.64608     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     23   3.59213  0.11274  3.63458  2.94342     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     24   3.23093  2.68543  3.27356  0.15734     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     25   0.12486  3.51901  2.89141  3.43411     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     26   3.23093  2.68543  3.27356  0.15734     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     27   3.59213  0.11274  3.63458  2.94342     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     28   3.59213  0.11274  3.63458  2.94342     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     29   3.04202  3.72657  0.10304  3.64608     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     30   3.59213  0.11274  3.63458  2.94342     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     31   3.23093  2.68543  3.27356  0.15734     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     32   3.04202  3.72657  0.10304  3.64608     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     33   0.12486  3.51901  2.89141  3.43411     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     34   0.12486  3.51901  2.89141  3.43411     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     35   3.23093  2.68543  3.27356  0.15734     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     36   3.23093  2.68543  3.27356  0.15734     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     37   3.23093  2.68543  3.27356  0.15734     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     38   0.12486  3.51901  2.89141  3.43411     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     39   0.12486  3.51901  2.89141  3.43411     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     40   3.04202  3.72657  0.10304  3.64608     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     41   3.59213  0.11274  3.63458  2.94342     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     42   0.12486  3.51901  2.89141  3.43411     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     43   3.23093  2.68543  3.27356  0.15734     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     44   0.12486  3.51901  2.89141  3.43411     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     45   3.23093  2.68543  3.27356  0.15734     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01712  4.07593        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_nineb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:41:05 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3743554959
+STATS LOCAL MSV       -8.1311  0.72123
+STATS LOCAL VITERBI   -7.9839  0.72123
+STATS LOCAL FORWARD   -4.0562  0.72123
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.30454  1.51465  1.59551  1.18413
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.70020  2.19823  2.14894  1.28770      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   3.30705  0.14631  3.36166  2.73626     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.86982  3.47591  0.13017  3.36931     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.97980  2.52563  3.03204  0.19727     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.86982  3.47591  0.13017  3.36931     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.97980  2.52563  3.03204  0.19727     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   0.15719  3.27118  2.73043  3.16274     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.86982  3.47591  0.13017  3.36931     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_onea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:39:33 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 781382756
+STATS LOCAL MSV       -7.5283  0.72797
+STATS LOCAL VITERBI   -8.3724  0.72797
+STATS LOCAL FORWARD   -3.0815  0.72797
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.09830  1.60161  1.42113  1.49812
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_oneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:39:39 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1194618091
+STATS LOCAL MSV       -7.4605  0.72829
+STATS LOCAL VITERBI   -8.3928  0.72829
+STATS LOCAL FORWARD   -3.2424  0.72829
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.09633  1.66831  1.48615  1.38192
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_onec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:39:45 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 620831756
+STATS LOCAL MSV       -7.6900  0.72827
+STATS LOCAL VITERBI   -8.3711  0.72827
+STATS LOCAL FORWARD   -3.1028  0.72827
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.18992  1.52066  1.49124  1.37796
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.81865  0.23582  2.88868  2.35662     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_oned_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:39:50 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3374549336
+STATS LOCAL MSV       -7.6531  0.72839
+STATS LOCAL VITERBI   -8.1622  0.72839
+STATS LOCAL FORWARD   -3.1511  0.72839
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.18847  1.58865  1.48979  1.32542
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:40:49 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3028493390
+STATS LOCAL MSV       -7.5398  0.72776
+STATS LOCAL VITERBI   -8.1250  0.72776
+STATS LOCAL FORWARD   -3.1186  0.72776
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.18774  1.47240  1.36573  1.55818
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   0.23862  2.84929  2.43386  2.70756     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:40:41 2012
+NSEQ  10
+EFFN  3.530273
+CKSUM 1801102075
+STATS LOCAL MSV       -7.6787  0.71931
+STATS LOCAL VITERBI   -7.8111  0.71931
+STATS LOCAL FORWARD   -3.8984  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.05070  1.31736  1.76014  1.55853
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  0.00000        *
+      1   3.15391  2.63661  3.19954  0.16850      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+      2   3.15391  2.63661  3.19954  0.16850      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+      3   1.71207  2.06815  1.14271  0.98314      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+      4   0.23016  3.12439  2.18555  3.01164      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+      5   3.50695  0.12174  3.55321  2.88245      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+      6   0.13370  3.44448  2.84348  3.35230      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+      7   3.50695  0.12174  3.55321  2.88245      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+      8   3.50695  0.12174  3.55321  2.88245      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+      9   3.15391  2.63661  3.19954  0.16850      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     10   2.99181  3.65250  0.11032  3.56399     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     11   0.13370  3.44448  2.84348  3.35230     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     12   0.13370  3.44448  2.84348  3.35230     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     13   0.13370  3.44448  2.84348  3.35230     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     14   3.15391  2.63661  3.19954  0.16850     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     15   3.50695  0.12174  3.55321  2.88245     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     16   0.13370  3.44448  2.84348  3.35230     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     17   0.13370  3.44448  2.84348  3.35230     17 - -
+          1.38629  1.38629  1.38629  1.38629
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+     18   2.99181  3.65250  0.11032  3.56399     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     19   3.50695  0.12174  3.55321  2.88245     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     20   0.13370  3.44448  2.84348  3.35230     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     21   0.13370  3.44448  2.84348  3.35230     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     22   2.99181  3.65250  0.11032  3.56399     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     23   0.13370  3.44448  2.84348  3.35230     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     24   2.07180  2.39292  2.65785  0.33886     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     25   3.50695  0.12174  3.55321  2.88245     25 - -
+          1.38629  1.38629  1.38629  1.38629
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+     26   0.13370  3.44448  2.84348  3.35230     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     27   3.50695  0.12174  3.55321  2.88245     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     28   3.50695  0.12174  3.55321  2.88245     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     29   3.50695  0.12174  3.55321  2.88245     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     30   2.99181  3.65250  0.11032  3.56399     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     31   3.50695  0.12174  3.55321  2.88245     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     32   3.15391  2.63661  3.19954  0.16850     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     33   2.99181  3.65250  0.11032  3.56399     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     34   0.13370  3.44448  2.84348  3.35230     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     35   0.13370  3.44448  2.84348  3.35230     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     36   3.50695  0.12174  3.55321  2.88245     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     37   3.15391  2.63661  3.19954  0.16850     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     38   3.15391  2.63661  3.19954  0.16850     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     39   0.13370  3.44448  2.84348  3.35230     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     40   0.13370  3.44448  2.84348  3.35230     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     41   2.99181  3.65250  0.11032  3.56399     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     42   3.50695  0.12174  3.55321  2.88245     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     43   0.13370  3.44448  2.84348  3.35230     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     44   3.15391  2.63661  3.19954  0.16850     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     45   0.13370  3.44448  2.84348  3.35230     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01792  4.03074        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_ten_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:41:15 2012
+NSEQ  9
+EFFN  3.827637
+CKSUM 3971025725
+STATS LOCAL MSV       -7.3204  0.71932
+STATS LOCAL VITERBI   -7.7155  0.71932
+STATS LOCAL FORWARD   -4.1318  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23642  1.73329  1.50126  1.17110
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  0.00000        *
+      1   3.24149  2.69213  3.28371  0.15587      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+      2   3.24149  2.69213  3.28371  0.15587      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+      3   0.67762  2.30348  2.25602  1.24654      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+      4   3.04875  3.73654  0.10210  3.65714      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+      5   3.24149  2.69213  3.28371  0.15587      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+      6   3.24149  2.69213  3.28371  0.15587      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+      7   3.60365  0.11159  3.64557  2.95161      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+      8   3.16295  0.21850  3.22065  2.17116      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+      9   3.24149  2.69213  3.28371  0.15587      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+     10   3.04875  3.73654  0.10210  3.65714     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+     11   0.12371  3.52912  2.89791  3.44523     11 - -
+          1.38629  1.38629  1.38629  1.38629
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+     12   3.04875  3.73654  0.10210  3.65714     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+     13   0.12371  3.52912  2.89791  3.44523     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
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+     15   3.24149  2.69213  3.28371  0.15587     15 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     17   3.04875  3.73654  0.10210  3.65714     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     21   0.12371  3.52912  2.89791  3.44523     21 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     23   0.21841  3.20443  2.20335  3.09683     23 - -
+          1.38629  1.38629  1.38629  1.38629
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+     25   2.39794  2.30920  1.65829  0.47918     25 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+     32   3.24149  2.69213  3.28371  0.15587     32 - -
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+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+     33   3.04875  3.73654  0.10210  3.65714     33 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     35   0.12371  3.52912  2.89791  3.44523     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+     36   3.24149  2.69213  3.28371  0.15587     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+     37   3.24149  2.69213  3.28371  0.15587     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+     38   3.24149  2.69213  3.28371  0.15587     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     42   3.60365  0.11159  3.64557  2.95161     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+     43   0.12371  3.52912  2.89791  3.44523     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+     44   3.24149  2.69213  3.28371  0.15587     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03374  4.09894  4.09894  1.46634  0.26236  1.09861  0.40547
+     45   0.12371  3.52912  2.89791  3.44523     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01701  4.08221        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_thirteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:42:05 2012
+NSEQ  24
+EFFN  3.893555
+CKSUM 191642901
+STATS LOCAL MSV       -7.2444  0.71933
+STATS LOCAL VITERBI   -7.7058  0.71933
+STATS LOCAL FORWARD   -4.3034  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16586  1.50746  1.51087  1.40179
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  0.00000        *
+      1   1.46824  2.04571  2.31358  0.61346      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+      2   1.05286  2.20903  2.24595  0.83143      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+      3   2.32070  1.97985  2.68818  0.36284      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+      4   0.12173  3.54680  2.90925  3.46466      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+      5   3.06047  3.75390  0.10049  3.67641      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+      6   0.12173  3.54680  2.90925  3.46466      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+      7   3.62373  0.10960  3.66473  2.96588      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+      8   3.62373  0.10960  3.66473  2.96588      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+      9   3.26001  2.70388  3.30149  0.15334      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     10   3.06047  3.75390  0.10049  3.67641     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     11   0.12173  3.54680  2.90925  3.46466     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     12   0.12173  3.54680  2.90925  3.46466     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     13   0.12173  3.54680  2.90925  3.46466     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     14   3.26001  2.70388  3.30149  0.15334     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     15   3.62373  0.10960  3.66473  2.96588     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     16   0.12173  3.54680  2.90925  3.46466     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     17   3.06047  3.75390  0.10049  3.67641     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     18   2.54857  2.39251  1.90817  0.38264     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     19   3.62373  0.10960  3.66473  2.96588     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     20   3.06047  3.75390  0.10049  3.67641     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     21   0.12173  3.54680  2.90925  3.46466     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     22   3.06047  3.75390  0.10049  3.67641     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     23   2.39260  3.42516  0.17435  3.32257     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     24   3.10643  2.32027  3.15457  0.20538     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     25   3.26001  2.70388  3.30149  0.15334     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     26   0.12173  3.54680  2.90925  3.46466     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     27   3.62373  0.10960  3.66473  2.96588     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     28   3.62373  0.10960  3.66473  2.96588     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     29   3.62373  0.10960  3.66473  2.96588     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     30   3.06047  3.75390  0.10049  3.67641     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     31   3.62373  0.10960  3.66473  2.96588     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     32   3.26001  2.70388  3.30149  0.15334     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     33   3.06047  3.75390  0.10049  3.67641     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     34   0.12173  3.54680  2.90925  3.46466     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     35   0.12173  3.54680  2.90925  3.46466     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     36   2.88119  1.85984  2.93863  0.30748     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     37   3.26001  2.70388  3.30149  0.15334     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     38   3.26001  2.70388  3.30149  0.15334     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     39   0.12173  3.54680  2.90925  3.46466     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     40   0.12173  3.54680  2.90925  3.46466     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     41   3.06047  3.75390  0.10049  3.67641     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     42   3.62373  0.10960  3.66473  2.96588     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     43   0.12173  3.54680  2.90925  3.46466     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     44   3.26001  2.70388  3.30149  0.15334     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03337  4.10982  4.10982  1.46634  0.26236  1.09861  0.40547
+     45   0.12173  3.54680  2.90925  3.46466     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01683  4.09327        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Alveolata_4_LSU_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Mar  1 14:39:59 2012
+NSEQ  8
+EFFN  3.683594
+CKSUM 435453820
+STATS LOCAL MSV       -7.5820  0.71933
+STATS LOCAL VITERBI   -7.6593  0.71933
+STATS LOCAL FORWARD   -3.8838  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11795  1.68208  1.35544  1.47302
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  0.00000        *
+      1   3.02205  3.69704  0.10587  3.61333      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+      2   0.98857  1.72053  2.09224  1.12236      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+      3   3.02205  3.69704  0.10587  3.61333      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+      4   0.12832  3.48915  2.87223  3.40132      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+      5   3.02205  3.69704  0.10587  3.61333      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+      6   0.12832  3.48915  2.87223  3.40132      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+      7   3.55808  0.11624  3.60208  2.91913      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+      8   0.12832  3.48915  2.87223  3.40132      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+      9   3.19991  2.66577  3.24376  0.16173      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     10   3.02205  3.69704  0.10587  3.61333     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     11   0.12832  3.48915  2.87223  3.40132     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     12   0.12832  3.48915  2.87223  3.40132     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     13   3.02205  3.69704  0.10587  3.61333     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     14   3.19991  2.66577  3.24376  0.16173     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     15   3.19991  2.66577  3.24376  0.16173     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     16   0.12832  3.48915  2.87223  3.40132     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     17   3.02205  3.69704  0.10587  3.61333     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     18   3.02205  3.69704  0.10587  3.61333     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     19   3.55808  0.11624  3.60208  2.91913     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     20   3.19991  2.66577  3.24376  0.16173     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     21   0.49923  1.63631  2.32597  2.29642     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     22   3.02205  3.69704  0.10587  3.61333     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     23   3.55808  0.11624  3.60208  2.91913     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     24   0.12832  3.48915  2.87223  3.40132     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     25   0.60696  1.83062  2.18714  1.70132     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     26   0.12832  3.48915  2.87223  3.40132     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     27   3.55808  0.11624  3.60208  2.91913     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     28   3.55808  0.11624  3.60208  2.91913     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     29   3.19991  2.66577  3.24376  0.16173     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     30   3.02205  3.69704  0.10587  3.61333     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     31   3.55808  0.11624  3.60208  2.91913     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     32   3.19991  2.66577  3.24376  0.16173     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     33   3.02205  3.69704  0.10587  3.61333     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     34   0.12832  3.48915  2.87223  3.40132     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     35   0.12832  3.48915  2.87223  3.40132     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     36   3.19991  2.66577  3.24376  0.16173     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     37   3.19991  2.66577  3.24376  0.16173     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     38   3.19991  2.66577  3.24376  0.16173     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     39   0.12832  3.48915  2.87223  3.40132     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     40   0.12832  3.48915  2.87223  3.40132     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     41   3.02205  3.69704  0.10587  3.61333     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     42   3.55808  0.11624  3.60208  2.91913     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     43   0.12832  3.48915  2.87223  3.40132     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     44   3.19991  2.66577  3.24376  0.16173     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03458  4.07475  4.07475  1.46634  0.26236  1.09861  0.40547
+     45   0.12832  3.48915  2.87223  3.40132     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01744  4.05761        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Alveolata_1_SSU_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:43:03 2012
+NSEQ  69
+EFFN  3.642883
+CKSUM 3148699463
+STATS LOCAL MSV       -7.4489  0.71932
+STATS LOCAL VITERBI   -7.6281  0.71932
+STATS LOCAL FORWARD   -4.1382  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33776  1.55982  1.24507  1.42932
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  0.00000        *
+      1   0.12970  3.47751  2.86475  3.38854      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+      2   2.93148  3.51149  0.13230  3.20034      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+      3   3.18787  2.65814  3.23219  0.16347      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+      4   3.54478  0.11764  3.58937  2.90961      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+      5   3.01421  3.68548  0.10701  3.60051      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+      6   3.18787  2.65814  3.23219  0.16347      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+      7   0.12970  3.47751  2.86475  3.38854      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+      8   0.12970  3.47751  2.86475  3.38854      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+      9   3.54478  0.11764  3.58937  2.90961      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     10   0.12970  3.47751  2.86475  3.38854     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     11   0.36931  1.96424  2.44668  2.50172     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     12   2.93148  3.51149  0.13230  3.20034     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     13   3.01421  3.68548  0.10701  3.60051     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     14   3.18787  2.65814  3.23219  0.16347     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     15   2.33627  2.48307  2.82552  0.27372     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     16   3.18787  2.65814  3.23219  0.16347     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     17   3.54478  0.11764  3.58937  2.90961     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     18   3.19125  0.20146  3.24795  2.27802     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     19   3.01421  3.68548  0.10701  3.60051     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     20   3.18787  2.65814  3.23219  0.16347     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     21   0.12970  3.47751  2.86475  3.38854     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     22   3.01421  3.68548  0.10701  3.60051     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     23   3.01421  3.68548  0.10701  3.60051     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     24   3.18787  2.65814  3.23219  0.16347     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     25   3.01421  3.68548  0.10701  3.60051     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     26   0.12970  3.47751  2.86475  3.38854     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     27   0.12970  3.47751  2.86475  3.38854     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     28   3.54478  0.11764  3.58937  2.90961     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     29   3.54478  0.11764  3.58937  2.90961     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     30   3.18787  2.65814  3.23219  0.16347     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     31   3.01421  3.68548  0.10701  3.60051     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     32   3.54478  0.11764  3.58937  2.90961     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     33   2.50860  3.43763  0.16147  3.33578     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     34   3.01421  3.68548  0.10701  3.60051     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     35   0.12970  3.47751  2.86475  3.38854     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     36   0.23093  3.00620  2.64834  2.45388     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     37   3.01421  3.68548  0.10701  3.60051     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     38   3.01421  3.68548  0.10701  3.60051     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     39   0.12970  3.47751  2.86475  3.38854     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     40   3.18787  2.65814  3.23219  0.16347     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     41   3.54478  0.11764  3.58937  2.90961     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     42   0.12970  3.47751  2.86475  3.38854     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     43   2.81519  2.59339  3.07078  0.19973     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     44   3.18787  2.65814  3.23219  0.16347     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03483  4.06781  4.06781  1.46634  0.26236  1.09861  0.40547
+     45   2.10397  0.41821  2.56367  1.94643     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01757  4.05055        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Alveolata_1_SSU_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:43:11 2012
+NSEQ  7
+EFFN  3.373535
+CKSUM 347251863
+STATS LOCAL MSV       -7.4282  0.71933
+STATS LOCAL VITERBI   -7.6473  0.71933
+STATS LOCAL FORWARD   -4.1966  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33048  1.59392  1.30706  1.33977
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  0.00000        *
+      1   0.13978  3.39641  2.81240  3.29960      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+      2   2.95876  3.60411  0.11539  3.51048      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+      3   3.10493  2.60552  3.15246  0.17607      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+      4   3.45170  0.12801  3.50037  2.84251      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+      5   2.95876  3.60411  0.11539  3.51048      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+      6   3.10493  2.60552  3.15246  0.17607      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+      7   0.13978  3.39641  2.81240  3.29960      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+      8   0.13978  3.39641  2.81240  3.29960      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+      9   3.45170  0.12801  3.50037  2.84251      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     10   0.13978  3.39641  2.81240  3.29960     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     11   2.43739  1.12083  2.50826  0.68281     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     12   2.95876  3.60411  0.11539  3.51048     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     13   2.95876  3.60411  0.11539  3.51048     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     14   3.10493  2.60552  3.15246  0.17607     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     15   0.13978  3.39641  2.81240  3.29960     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     16   3.10493  2.60552  3.15246  0.17607     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     17   3.45170  0.12801  3.50037  2.84251     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     18   3.10493  2.60552  3.15246  0.17607     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     19   2.95876  3.60411  0.11539  3.51048     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     20   3.10493  2.60552  3.15246  0.17607     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     21   0.13978  3.39641  2.81240  3.29960     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     22   2.95876  3.60411  0.11539  3.51048     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     23   2.95876  3.60411  0.11539  3.51048     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     24   3.10493  2.60552  3.15246  0.17607     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     25   2.95876  3.60411  0.11539  3.51048     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     26   0.13978  3.39641  2.81240  3.29960     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     27   0.13978  3.39641  2.81240  3.29960     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     28   3.45170  0.12801  3.50037  2.84251     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     29   3.45170  0.12801  3.50037  2.84251     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     30   3.10493  2.60552  3.15246  0.17607     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     31   2.95876  3.60411  0.11539  3.51048     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     32   3.45170  0.12801  3.50037  2.84251     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     33   0.13978  3.39641  2.81240  3.29960     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     34   2.95876  3.60411  0.11539  3.51048     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     35   0.13978  3.39641  2.81240  3.29960     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     36   3.10493  2.60552  3.15246  0.17607     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     37   2.95876  3.60411  0.11539  3.51048     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     38   2.95876  3.60411  0.11539  3.51048     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     39   0.13978  3.39641  2.81240  3.29960     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     40   3.10493  2.60552  3.15246  0.17607     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     41   3.45170  0.12801  3.50037  2.84251     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     42   0.13978  3.39641  2.81240  3.29960     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     43   3.10493  2.60552  3.15246  0.17607     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     44   3.10493  2.60552  3.15246  0.17607     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02061  4.02061  1.46634  0.26236  1.09861  0.40547
+     45   3.45170  0.12801  3.50037  2.84251     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01844  4.00251        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/A.hmm.h3f
Binary file ITSx_db/HMMs/A.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/A.hmm.h3i
Binary file ITSx_db/HMMs/A.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/A.hmm.h3m
Binary file ITSx_db/HMMs/A.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/A.hmm.h3p
Binary file ITSx_db/HMMs/A.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/B.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/B.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,2325 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bryophyta_58S_end_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:55:01 2012
+NSEQ  32
+EFFN  3.136719
+CKSUM 2659440974
+STATS LOCAL MSV       -8.2375  0.71932
+STATS LOCAL VITERBI   -7.5917  0.71932
+STATS LOCAL FORWARD   -3.9020  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72251  1.15807  1.14566  1.66454
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  0.00000        *
+      1   3.02702  2.55588  3.07751  0.18893      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+      2   2.90418  3.52505  0.12426  3.42332      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+      3   3.36220  0.13900  3.41461  2.77708      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+      4   2.90418  3.52505  0.12426  3.42332      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+      5   3.36220  0.13900  3.41461  2.77708      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+      6   3.36220  0.13900  3.41461  2.77708      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+      7   3.36220  0.13900  3.41461  2.77708      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+      8   2.90418  3.52505  0.12426  3.42332      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+      9   0.15028  3.31884  2.76184  3.21476      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     10   2.90418  3.52505  0.12426  3.42332     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     11   2.90418  3.52505  0.12426  3.42332     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     12   3.36220  0.13900  3.41461  2.77708     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     13   3.02702  2.55588  3.07751  0.18893     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     14   3.36220  0.13900  3.41461  2.77708     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     15   2.90418  3.52505  0.12426  3.42332     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     16   0.15028  3.31884  2.76184  3.21476     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     17   3.36220  0.13900  3.41461  2.77708     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     18   3.36220  0.13900  3.41461  2.77708     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     19   2.90418  3.52505  0.12426  3.42332     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     20   0.15028  3.31884  2.76184  3.21476     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     21   2.90418  3.52505  0.12426  3.42332     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     22   2.90418  3.52505  0.12426  3.42332     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     23   2.90418  3.52505  0.12426  3.42332     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     24   3.36220  0.13900  3.41461  2.77708     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     25   0.15028  3.31884  2.76184  3.21476     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     26   3.02702  2.55588  3.07751  0.18893     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     27   3.02702  2.55588  3.07751  0.18893     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     28   3.02702  2.55588  3.07751  0.18893     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     29   3.36220  0.13900  3.41461  2.77708     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     30   3.36220  0.13900  3.41461  2.77708     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     31   2.90418  3.52505  0.12426  3.42332     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     32   2.54419  2.45655  2.84459  0.25157     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     33   3.02702  2.55588  3.07751  0.18893     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     34   0.15028  3.31884  2.76184  3.21476     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     35   2.90418  3.52505  0.12426  3.42332     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     36   0.15028  3.31884  2.76184  3.21476     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     37   2.90418  3.52505  0.12426  3.42332     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     38   3.36220  0.13900  3.41461  2.77708     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     39   2.90418  3.52505  0.12426  3.42332     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     40   3.02702  2.55588  3.07751  0.18893     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     41   3.36220  0.13900  3.41461  2.77708     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     42   0.15028  3.31884  2.76184  3.21476     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     43   3.36220  0.13900  3.41461  2.77708     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     44   3.36220  0.13900  3.41461  2.77708     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     45   2.90418  3.52505  0.12426  3.42332     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01928  3.95828        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bryophyta_58S_end_onea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:52:57 2012
+NSEQ  763
+EFFN  3.146374
+CKSUM 3906571075
+STATS LOCAL MSV       -8.0133  0.71932
+STATS LOCAL VITERBI   -7.7300  0.71932
+STATS LOCAL FORWARD   -3.9523  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72681  1.15592  1.20168  1.57653
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  0.00000        *
+      1   3.03029  2.55797  3.08065  0.18837      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+      2   2.90652  3.52842  0.12386  3.42702      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+      3   3.36599  0.13851  3.41824  2.77987      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+      4   2.90652  3.52842  0.12386  3.42702      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+      5   3.36599  0.13851  3.41824  2.77987      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+      6   3.36599  0.13851  3.41824  2.77987      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+      7   3.31429  0.15005  3.36782  2.68075      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+      8   2.90652  3.52842  0.12386  3.42702      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+      9   0.14982  3.32211  2.76398  3.21834      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     10   2.90652  3.52842  0.12386  3.42702     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     11   2.90652  3.52842  0.12386  3.42702     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     12   3.36599  0.13851  3.41824  2.77987     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     13   3.03029  2.55797  3.08065  0.18837     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     14   3.03029  2.55797  3.08065  0.18837     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     15   2.90652  3.52842  0.12386  3.42702     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     16   3.03029  2.55797  3.08065  0.18837     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     17   3.36599  0.13851  3.41824  2.77987     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     18   3.36599  0.13851  3.41824  2.77987     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     19   0.14982  3.32211  2.76398  3.21834     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     20   0.14982  3.32211  2.76398  3.21834     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     21   2.90652  3.52842  0.12386  3.42702     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     22   2.90652  3.52842  0.12386  3.42702     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     23   2.90652  3.52842  0.12386  3.42702     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     24   3.36599  0.13851  3.41824  2.77987     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     25   0.14982  3.32211  2.76398  3.21834     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     26   3.03029  2.55797  3.08065  0.18837     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     27   3.03029  2.55797  3.08065  0.18837     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     28   3.03029  2.55797  3.08065  0.18837     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     29   3.36599  0.13851  3.41824  2.77987     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     30   3.36599  0.13851  3.41824  2.77987     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     31   2.90652  3.52842  0.12386  3.42702     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     32   3.36599  0.13851  3.41824  2.77987     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     33   3.03029  2.55797  3.08065  0.18837     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     34   0.14982  3.32211  2.76398  3.21834     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     35   2.90652  3.52842  0.12386  3.42702     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     36   0.14982  3.32211  2.76398  3.21834     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     37   2.90652  3.52842  0.12386  3.42702     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     38   3.36599  0.13851  3.41824  2.77987     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     39   2.90652  3.52842  0.12386  3.42702     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     40   3.03029  2.55797  3.08065  0.18837     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     41   3.36599  0.13851  3.41824  2.77987     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     42   0.14982  3.32211  2.76398  3.21834     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     43   3.36599  0.13851  3.41824  2.77987     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     44   3.36599  0.13851  3.41824  2.77987     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03813  3.97900  3.97900  1.46634  0.26236  1.09861  0.40547
+     45   2.90652  3.52842  0.12386  3.42702     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01924  3.96012        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bryophyta_58S_end_oneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:53:07 2012
+NSEQ  4
+EFFN  3.128906
+CKSUM 917505709
+STATS LOCAL MSV       -8.0379  0.71931
+STATS LOCAL VITERBI   -7.8725  0.71931
+STATS LOCAL FORWARD   -3.8063  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63717  1.15833  1.20077  1.65811
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  0.00000        *
+      1   3.02437  2.55419  3.07496  0.18939      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      2   2.90228  3.52232  0.12458  3.42031      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      3   3.35912  0.13939  3.41165  2.77481      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      4   2.90228  3.52232  0.12458  3.42031      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      5   3.35912  0.13939  3.41165  2.77481      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      6   3.35912  0.13939  3.41165  2.77481      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      7   3.35912  0.13939  3.41165  2.77481      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      8   2.90228  3.52232  0.12458  3.42031      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      9   0.15066  3.31617  2.76009  3.21184      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     10   2.90228  3.52232  0.12458  3.42031     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     11   2.90228  3.52232  0.12458  3.42031     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     12   3.35912  0.13939  3.41165  2.77481     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     13   3.02437  2.55419  3.07496  0.18939     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     14   3.02437  2.55419  3.07496  0.18939     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     15   2.90228  3.52232  0.12458  3.42031     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     16   0.15066  3.31617  2.76009  3.21184     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     17   3.35912  0.13939  3.41165  2.77481     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     18   3.35912  0.13939  3.41165  2.77481     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     19   0.15066  3.31617  2.76009  3.21184     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     20   0.15066  3.31617  2.76009  3.21184     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     21   2.90228  3.52232  0.12458  3.42031     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     22   2.90228  3.52232  0.12458  3.42031     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     23   2.90228  3.52232  0.12458  3.42031     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     24   3.35912  0.13939  3.41165  2.77481     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     25   0.15066  3.31617  2.76009  3.21184     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     26   3.02437  2.55419  3.07496  0.18939     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     27   3.02437  2.55419  3.07496  0.18939     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     28   3.02437  2.55419  3.07496  0.18939     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     29   3.35912  0.13939  3.41165  2.77481     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     30   3.02437  2.55419  3.07496  0.18939     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     31   2.90228  3.52232  0.12458  3.42031     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     32   3.35912  0.13939  3.41165  2.77481     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     33   3.35912  0.13939  3.41165  2.77481     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     34   0.15066  3.31617  2.76009  3.21184     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     35   2.90228  3.52232  0.12458  3.42031     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     36   0.15066  3.31617  2.76009  3.21184     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     37   2.90228  3.52232  0.12458  3.42031     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     38   3.35912  0.13939  3.41165  2.77481     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     39   2.90228  3.52232  0.12458  3.42031     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     40   3.02437  2.55419  3.07496  0.18939     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     41   3.35912  0.13939  3.41165  2.77481     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     42   0.15066  3.31617  2.76009  3.21184     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     43   3.35912  0.13939  3.41165  2.77481     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     44   3.35912  0.13939  3.41165  2.77481     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     45   2.90228  3.52232  0.12458  3.42031     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01931  3.95679        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bryophyta_58S_end_onec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:53:43 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2795560661
+STATS LOCAL MSV       -7.3318  0.72746
+STATS LOCAL VITERBI   -8.3092  0.72746
+STATS LOCAL FORWARD   -3.2447  0.72746
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66863  1.19517  1.21903  1.54495
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bryophyta_58S_end_oned_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:53:52 2012
+NSEQ  14
+EFFN  3.106934
+CKSUM 2932514730
+STATS LOCAL MSV       -8.1189  0.71931
+STATS LOCAL VITERBI   -7.8598  0.71931
+STATS LOCAL FORWARD   -3.6138  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63809  1.10855  1.20186  1.74310
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  0.00000        *
+      1   3.01688  2.54940  3.06775  0.19069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+      2   2.89688  3.51457  0.12549  3.41179      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+      3   3.35041  0.14052  3.40329  2.76839      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+      4   2.89688  3.51457  0.12549  3.41179      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+      5   3.35041  0.14052  3.40329  2.76839      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+      6   3.35041  0.14052  3.40329  2.76839      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+      7   3.35041  0.14052  3.40329  2.76839      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+      8   2.89688  3.51457  0.12549  3.41179      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+      9   0.15173  3.30864  2.75514  3.20362      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     10   2.89688  3.51457  0.12549  3.41179     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     11   2.89688  3.51457  0.12549  3.41179     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     12   3.35041  0.14052  3.40329  2.76839     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     13   3.01688  2.54940  3.06775  0.19069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     14   3.01688  2.54940  3.06775  0.19069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     15   2.89688  3.51457  0.12549  3.41179     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     16   0.15173  3.30864  2.75514  3.20362     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     17   3.35041  0.14052  3.40329  2.76839     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     18   3.35041  0.14052  3.40329  2.76839     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     19   0.15173  3.30864  2.75514  3.20362     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     20   0.15173  3.30864  2.75514  3.20362     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     21   2.89688  3.51457  0.12549  3.41179     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     22   2.89688  3.51457  0.12549  3.41179     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     23   2.89688  3.51457  0.12549  3.41179     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     24   3.35041  0.14052  3.40329  2.76839     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     25   0.15173  3.30864  2.75514  3.20362     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     26   3.01688  2.54940  3.06775  0.19069     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     27   3.35041  0.14052  3.40329  2.76839     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     28   3.01688  2.54940  3.06775  0.19069     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     29   3.35041  0.14052  3.40329  2.76839     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     30   3.01688  2.54940  3.06775  0.19069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     31   2.89688  3.51457  0.12549  3.41179     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     32   3.35041  0.14052  3.40329  2.76839     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     33   3.35041  0.14052  3.40329  2.76839     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     34   0.15173  3.30864  2.75514  3.20362     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     35   2.89688  3.51457  0.12549  3.41179     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     36   0.15173  3.30864  2.75514  3.20362     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     37   2.89688  3.51457  0.12549  3.41179     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     38   3.35041  0.14052  3.40329  2.76839     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     39   2.89688  3.51457  0.12549  3.41179     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     40   3.01688  2.54940  3.06775  0.19069     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     41   3.35041  0.14052  3.40329  2.76839     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     42   0.15173  3.30864  2.75514  3.20362     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     43   3.35041  0.14052  3.40329  2.76839     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     44   3.35041  0.14052  3.40329  2.76839     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03842  3.97160  3.97160  1.46634  0.26236  1.09861  0.40547
+     45   2.89688  3.51457  0.12549  3.41179     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01939  3.95258        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bryophyta_58S_end_onee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:53:59 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2130174180
+STATS LOCAL MSV       -8.0947  0.71979
+STATS LOCAL VITERBI   -7.8867  0.71979
+STATS LOCAL FORWARD   -3.8117  0.71979
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72110  1.16173  1.14816  1.65566
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bryophyta_58S_end_onef_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:54:06 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 4221773349
+STATS LOCAL MSV       -8.1256  0.72011
+STATS LOCAL VITERBI   -7.8157  0.72011
+STATS LOCAL FORWARD   -3.5545  0.72011
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.69977  1.10910  1.16851  1.73393
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
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+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bryophyta_58S_end_oneg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:54:15 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3511530240
+STATS LOCAL MSV       -7.5261  0.72724
+STATS LOCAL VITERBI   -8.3284  0.72724
+STATS LOCAL FORWARD   -3.2798  0.72724
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.59726  1.15373  1.21894  1.67906
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bryophyta_58S_end_oneh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:54:21 2012
+NSEQ  424
+EFFN  3.179871
+CKSUM 2931873354
+STATS LOCAL MSV       -8.1249  0.71932
+STATS LOCAL VITERBI   -7.7146  0.71932
+STATS LOCAL FORWARD   -3.9901  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82243  1.15677  1.14939  1.57486
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  0.00000        *
+      1   3.04159  2.56518  3.09153  0.18645      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+      2   2.91458  3.54002  0.12252  3.43980      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+      3   3.37907  0.13684  3.43079  2.78949      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+      4   2.91458  3.54002  0.12252  3.43980      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+      5   3.37907  0.13684  3.43079  2.78949      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+      6   3.37907  0.13684  3.43079  2.78949      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+      7   3.37907  0.13684  3.43079  2.78949      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+      8   2.91458  3.54002  0.12252  3.43980      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+      9   0.14824  3.33344  2.77140  3.23071      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     10   2.91458  3.54002  0.12252  3.43980     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     11   2.91458  3.54002  0.12252  3.43980     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     12   3.37907  0.13684  3.43079  2.78949     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     13   3.04159  2.56518  3.09153  0.18645     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     14   3.04159  2.56518  3.09153  0.18645     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     15   2.91458  3.54002  0.12252  3.43980     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     16   3.00846  2.48394  3.05939  0.19808     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     17   3.37907  0.13684  3.43079  2.78949     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     18   3.24260  0.16848  3.29802  2.53787     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     19   2.62119  3.26368  0.17495  3.00507     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     20   0.14824  3.33344  2.77140  3.23071     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     21   2.91458  3.54002  0.12252  3.43980     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     22   2.91458  3.54002  0.12252  3.43980     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     23   2.91458  3.54002  0.12252  3.43980     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     24   3.37907  0.13684  3.43079  2.78949     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     25   0.14824  3.33344  2.77140  3.23071     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     26   3.04159  2.56518  3.09153  0.18645     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     27   3.04159  2.56518  3.09153  0.18645     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     28   3.04159  2.56518  3.09153  0.18645     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     29   3.37907  0.13684  3.43079  2.78949     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     30   3.37907  0.13684  3.43079  2.78949     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     31   2.91458  3.54002  0.12252  3.43980     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     32   3.29792  0.15507  3.35176  2.63575     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     33   3.04159  2.56518  3.09153  0.18645     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     34   0.14824  3.33344  2.77140  3.23071     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     35   2.91458  3.54002  0.12252  3.43980     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     36   0.14824  3.33344  2.77140  3.23071     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     37   2.91458  3.54002  0.12252  3.43980     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     38   3.37907  0.13684  3.43079  2.78949     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     39   2.91458  3.54002  0.12252  3.43980     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     40   3.04159  2.56518  3.09153  0.18645     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     41   3.37907  0.13684  3.43079  2.78949     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     42   0.14824  3.33344  2.77140  3.23071     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     43   3.37907  0.13684  3.43079  2.78949     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     44   3.37907  0.13684  3.43079  2.78949     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03788  3.98525  3.98525  1.46634  0.26236  1.09861  0.40547
+     45   2.91458  3.54002  0.12252  3.43980     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01912  3.96649        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bryophyta_58S_end_threea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:54:43 2012
+NSEQ  21
+EFFN  3.124878
+CKSUM 2929418065
+STATS LOCAL MSV       -8.2559  0.71933
+STATS LOCAL VITERBI   -7.8263  0.71933
+STATS LOCAL FORWARD   -3.7613  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93119  1.10249  1.09529  1.66847
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  0.00000        *
+      1   2.90129  3.52090  0.12475  3.41875      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+      2   3.35753  0.13960  3.41012  2.77364      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+      3   2.90129  3.52090  0.12475  3.41875      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+      4   3.35753  0.13960  3.41012  2.77364      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+      5   3.35753  0.13960  3.41012  2.77364      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+      6   3.35753  0.13960  3.41012  2.77364      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+      7   2.90129  3.52090  0.12475  3.41875      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+      8   0.15086  3.31480  2.75918  3.21034      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+      9   2.90129  3.52090  0.12475  3.41875      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     10   2.90129  3.52090  0.12475  3.41875     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     11   3.35753  0.13960  3.41012  2.77364     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     12   3.02300  2.55331  3.07364  0.18963     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     13   3.02300  2.55331  3.07364  0.18963     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     14   2.90129  3.52090  0.12475  3.41875     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     15   3.02300  2.55331  3.07364  0.18963     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     16   3.35753  0.13960  3.41012  2.77364     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     17   3.35753  0.13960  3.41012  2.77364     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     18   3.35753  0.13960  3.41012  2.77364     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     19   2.90129  3.52090  0.12475  3.41875     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     20   0.15086  3.31480  2.75918  3.21034     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     21   2.90129  3.52090  0.12475  3.41875     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     22   2.90129  3.52090  0.12475  3.41875     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     23   2.90129  3.52090  0.12475  3.41875     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     24   3.35753  0.13960  3.41012  2.77364     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     25   0.15086  3.31480  2.75918  3.21034     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     26   3.02300  2.55331  3.07364  0.18963     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     27   2.90129  3.52090  0.12475  3.41875     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     28   2.79267  2.04724  2.85116  0.28519     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     29   3.35753  0.13960  3.41012  2.77364     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     30   3.02300  2.55331  3.07364  0.18963     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     31   2.90129  3.52090  0.12475  3.41875     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     32   3.35753  0.13960  3.41012  2.77364     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     33   3.35753  0.13960  3.41012  2.77364     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     34   3.02300  2.55331  3.07364  0.18963     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     35   2.90129  3.52090  0.12475  3.41875     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     36   0.15086  3.31480  2.75918  3.21034     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     37   2.90129  3.52090  0.12475  3.41875     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     38   3.35753  0.13960  3.41012  2.77364     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     39   2.90129  3.52090  0.12475  3.41875     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     40   3.02300  2.55331  3.07364  0.18963     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     41   3.35753  0.13960  3.41012  2.77364     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     42   0.15086  3.31480  2.75918  3.21034     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     43   3.35753  0.13960  3.41012  2.77364     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     44   3.35753  0.13960  3.41012  2.77364     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03828  3.97497  3.97497  1.46634  0.26236  1.09861  0.40547
+     45   2.90129  3.52090  0.12475  3.41875     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01932  3.95602        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bryophyta_58S_end_threeb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:54:50 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2625608571
+STATS LOCAL MSV       -7.6293  0.72737
+STATS LOCAL VITERBI   -8.2377  0.72737
+STATS LOCAL FORWARD   -3.4980  0.72737
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74692  1.19578  1.17082  1.54594
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bryophyta_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:54:32 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 4268316376
+STATS LOCAL MSV       -7.9410  0.71971
+STATS LOCAL VITERBI   -7.7402  0.71971
+STATS LOCAL FORWARD   -3.8312  0.71971
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54913  1.27857  1.09139  1.75224
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   0.15719  3.27118  2.73043  3.16274     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   0.15719  3.27118  2.73043  3.16274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   3.30705  0.14631  3.36166  2.73626     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.86982  3.47591  0.13017  3.36931     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Bryophyta_58S_start_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:20:53 2012
+NSEQ  566
+EFFN  3.320724
+CKSUM 3711830997
+STATS LOCAL MSV       -8.0550  0.71933
+STATS LOCAL VITERBI   -7.5860  0.71933
+STATS LOCAL FORWARD   -3.9938  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21886  1.31922  1.52638  1.51518
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  0.00000        *
+      1   3.43239  0.13029  3.48188  2.82847      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+      2   0.15265  3.33865  2.70501  3.23873      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+      3   0.14198  3.37964  2.80152  3.28124      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+      4   3.43239  0.13029  3.48188  2.82847      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+      5   3.08798  2.59474  3.13616  0.17878      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+      6   3.43239  0.13029  3.48188  2.82847      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+      7   3.08798  2.59474  3.13616  0.17878      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+      8   3.43239  0.13029  3.48188  2.82847      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+      9   0.15265  3.33865  2.70501  3.23873      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     10   2.83675  3.53683  0.12761  3.43933     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     11   3.43239  0.13029  3.48188  2.82847     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     12   0.14198  3.37964  2.80152  3.28124     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     13   0.14198  3.37964  2.80152  3.28124     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     14   3.32823  0.14604  3.27780  2.77564     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     15   2.94709  3.58712  0.11723  3.49173     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     16   2.94709  3.58712  0.11723  3.49173     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     17   0.14198  3.37964  2.80152  3.28124     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     18   3.08798  2.59474  3.13616  0.17878     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     19   0.14198  3.37964  2.80152  3.28124     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     20   3.08798  2.59474  3.13616  0.17878     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     21   3.43239  0.13029  3.48188  2.82847     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     22   3.08798  2.59474  3.13616  0.17878     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     23   3.08798  2.59474  3.13616  0.17878     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     24   2.94709  3.58712  0.11723  3.49173     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     25   2.94709  3.58712  0.11723  3.49173     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     26   3.43239  0.13029  3.48188  2.82847     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     27   3.08798  2.59474  3.13616  0.17878     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     28   3.43239  0.13029  3.48188  2.82847     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     29   2.88428  2.13441  2.93989  0.25758     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     30   2.95689  2.28766  3.00975  0.22663     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     31   2.94709  3.58712  0.11723  3.49173     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     32   3.43239  0.13029  3.48188  2.82847     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     33   0.14198  3.37964  2.80152  3.28124     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     34   0.16245  3.26709  2.75306  3.03462     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     35   3.43239  0.13029  3.48188  2.82847     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     36   2.94709  3.58712  0.11723  3.49173     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     37   0.14198  3.37964  2.80152  3.28124     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     38   3.08798  2.59474  3.13616  0.17878     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     39   2.94709  3.58712  0.11723  3.49173     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     40   0.14198  3.37964  2.80152  3.28124     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     41   0.14198  3.37964  2.80152  3.28124     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     42   2.84069  3.53870  0.12722  3.44129     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     43   0.14198  3.37964  2.80152  3.28124     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     44   0.14198  3.37964  2.80152  3.28124     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03690  4.01110  4.01110  1.46634  0.26236  1.09861  0.40547
+     45   3.43239  0.13029  3.48188  2.82847     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01862  3.99282        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Bryophyta_4_LSU_start_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 23:04:06 2012
+NSEQ  571
+EFFN  3.376198
+CKSUM 15171129
+STATS LOCAL MSV       -7.6849  0.71932
+STATS LOCAL VITERBI   -7.6602  0.71932
+STATS LOCAL FORWARD   -3.8754  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.10949  1.39565  1.60122  1.50982
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  0.00000        *
+      1   0.13967  3.39725  2.81295  3.30053      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+      2   2.90725  2.33387  2.85709  0.23443      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+      3   3.45267  0.12790  3.50130  2.84322      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+      4   0.13967  3.39725  2.81295  3.30053      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+      5   2.95934  3.60496  0.11529  3.51143      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+      6   0.13967  3.39725  2.81295  3.30053      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+      7   3.45267  0.12790  3.50130  2.84322      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+      8   3.45267  0.12790  3.50130  2.84322      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+      9   3.10579  2.60606  3.15328  0.17593      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     10   2.93647  0.19916  2.90193  2.62260     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     11   3.10579  2.60606  3.15328  0.17593     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     12   0.16927  3.28718  2.56424  3.18495     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     13   0.13967  3.39725  2.81295  3.30053     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     14   3.10579  2.60606  3.15328  0.17593     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     15   3.45267  0.12790  3.50130  2.84322     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     16   2.69287  3.47774  0.14237  3.37743     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     17   2.95934  3.60496  0.11529  3.51143     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     18   0.18562  3.23206  2.45277  3.12631     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     19   0.13967  3.39725  2.81295  3.30053     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     20   0.13967  3.39725  2.81295  3.30053     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     21   0.13967  3.39725  2.81295  3.30053     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     22   2.95934  3.60496  0.11529  3.51143     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     23   0.13967  3.39725  2.81295  3.30053     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     24   3.38216  0.14287  3.43286  2.70503     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     25   3.07320  2.52400  3.12178  0.18692     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     26   0.13967  3.39725  2.81295  3.30053     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     27   3.45267  0.12790  3.50130  2.84322     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     28   3.45267  0.12790  3.50130  2.84322     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     29   3.45267  0.12790  3.50130  2.84322     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     30   2.95934  3.60496  0.11529  3.51143     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     31   3.45267  0.12790  3.50130  2.84322     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     32   3.10579  2.60606  3.15328  0.17593     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     33   2.95934  3.60496  0.11529  3.51143     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     34   0.13967  3.39725  2.81295  3.30053     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     35   2.95934  3.60496  0.11529  3.51143     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     36   3.10579  2.60606  3.15328  0.17593     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     37   3.10579  2.60606  3.15328  0.17593     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     38   3.10579  2.60606  3.15328  0.17593     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     39   0.13967  3.39725  2.81295  3.30053     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     40   0.13967  3.39725  2.81295  3.30053     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     41   2.95934  3.60496  0.11529  3.51143     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     42   3.45267  0.12790  3.50130  2.84322     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     43   0.13967  3.39725  2.81295  3.30053     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     44   3.10579  2.60606  3.15328  0.17593     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02109  4.02109  1.46634  0.26236  1.09861  0.40547
+     45   0.13967  3.39725  2.81295  3.30053     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01843  4.00300        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Bryophyta_1_SSU_end_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:17:01 2012
+NSEQ  104
+EFFN  3.361084
+CKSUM 3707920726
+STATS LOCAL MSV       -8.0254  0.71932
+STATS LOCAL VITERBI   -7.6516  0.71932
+STATS LOCAL FORWARD   -4.1129  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.32957  1.63353  1.18639  1.44882
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  0.00000        *
+      1   0.16956  3.28379  2.56472  3.18126      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+      2   2.60252  3.17954  0.19430  2.79852      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+      3   2.59843  2.38615  2.17412  0.32862      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+      4   3.09028  0.21945  3.14994  2.21922      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+      5   2.95603  3.60014  0.11581  3.50610      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+      6   3.10096  2.60299  3.14864  0.17670      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+      7   0.14029  3.39248  2.80985  3.29530      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+      8   0.14029  3.39248  2.80985  3.29530      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+      9   3.44718  0.12854  3.49604  2.83923      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     10   0.14029  3.39248  2.80985  3.29530     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     11   0.14029  3.39248  2.80985  3.29530     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     12   2.95603  3.60014  0.11581  3.50610     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     13   2.95603  3.60014  0.11581  3.50610     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     14   3.10096  2.60299  3.14864  0.17670     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     15   3.10096  2.60299  3.14864  0.17670     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     16   3.10096  2.60299  3.14864  0.17670     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     17   3.44718  0.12854  3.49604  2.83923     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     18   3.44718  0.12854  3.49604  2.83923     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     19   2.95603  3.60014  0.11581  3.50610     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     20   3.10096  2.60299  3.14864  0.17670     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     21   0.14029  3.39248  2.80985  3.29530     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     22   2.95603  3.60014  0.11581  3.50610     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     23   2.95603  3.60014  0.11581  3.50610     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     24   3.10096  2.60299  3.14864  0.17670     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     25   2.95603  3.60014  0.11581  3.50610     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     26   0.14029  3.39248  2.80985  3.29530     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     27   0.14029  3.39248  2.80985  3.29530     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     28   3.44718  0.12854  3.49604  2.83923     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     29   3.44718  0.12854  3.49604  2.83923     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     30   3.10096  2.60299  3.14864  0.17670     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     31   2.95603  3.60014  0.11581  3.50610     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     32   3.44718  0.12854  3.49604  2.83923     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     33   2.95603  3.60014  0.11581  3.50610     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     34   2.95603  3.60014  0.11581  3.50610     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     35   0.14029  3.39248  2.80985  3.29530     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     36   0.14029  3.39248  2.80985  3.29530     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     37   2.95603  3.60014  0.11581  3.50610     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     38   2.95603  3.60014  0.11581  3.50610     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     39   0.14029  3.39248  2.80985  3.29530     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     40   3.10096  2.60299  3.14864  0.17670     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     41   3.44718  0.12854  3.49604  2.83923     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     42   0.14029  3.39248  2.80985  3.29530     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     43   3.10096  2.60299  3.14864  0.17670     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     44   3.10096  2.60299  3.14864  0.17670     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01838  4.01838  1.46634  0.26236  1.09861  0.40547
+     45   2.95603  3.60014  0.11581  3.50610     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01848  4.00023        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/B.hmm.h3f
Binary file ITSx_db/HMMs/B.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/B.hmm.h3i
Binary file ITSx_db/HMMs/B.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/B.hmm.h3m
Binary file ITSx_db/HMMs/B.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/B.hmm.h3p
Binary file ITSx_db/HMMs/B.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/C.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/C.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,3100 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bacillariophyta_58S_end_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:42:32 2012
+NSEQ  5
+EFFN  3.325195
+CKSUM 993487011
+STATS LOCAL MSV       -8.1073  0.71931
+STATS LOCAL VITERBI   -7.7843  0.71931
+STATS LOCAL FORWARD   -3.8720  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47720  1.44778  1.45140  1.19603
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  0.00000        *
+      1   2.94809  3.58857  0.11707  3.49333      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      2   3.43404  0.13010  3.48346  2.82967      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      3   2.94809  3.58857  0.11707  3.49333      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      4   3.43404  0.13010  3.48346  2.82967      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      5   3.08942  2.59566  3.13755  0.17855      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      6   0.14179  3.38107  2.80245  3.28281      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      7   3.43404  0.13010  3.48346  2.82967      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      8   3.08942  2.59566  3.13755  0.17855      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      9   2.94809  3.58857  0.11707  3.49333      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     10   0.14179  3.38107  2.80245  3.28281     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     11   2.94809  3.58857  0.11707  3.49333     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     12   3.08942  2.59566  3.13755  0.17855     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     13   0.14179  3.38107  2.80245  3.28281     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     14   0.14179  3.38107  2.80245  3.28281     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     15   3.08942  2.59566  3.13755  0.17855     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     16   3.43404  0.13010  3.48346  2.82967     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     17   3.08942  2.59566  3.13755  0.17855     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     18   3.43404  0.13010  3.48346  2.82967     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     19   0.14179  3.38107  2.80245  3.28281     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     20   2.94809  3.58857  0.11707  3.49333     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     21   3.08942  2.59566  3.13755  0.17855     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     22   0.14179  3.38107  2.80245  3.28281     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     23   2.94809  3.58857  0.11707  3.49333     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     24   3.43404  0.13010  3.48346  2.82967     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     25   0.14179  3.38107  2.80245  3.28281     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     26   3.08942  2.59566  3.13755  0.17855     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     27   2.94809  3.58857  0.11707  3.49333     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     28   3.43404  0.13010  3.48346  2.82967     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     29   3.08942  2.59566  3.13755  0.17855     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     30   3.08942  2.59566  3.13755  0.17855     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     31   0.14179  3.38107  2.80245  3.28281     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     32   3.08942  2.59566  3.13755  0.17855     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     33   3.43404  0.13010  3.48346  2.82967     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     34   3.08942  2.59566  3.13755  0.17855     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     35   2.94809  3.58857  0.11707  3.49333     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     36   0.14179  3.38107  2.80245  3.28281     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     37   2.94809  3.58857  0.11707  3.49333     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     38   3.08942  2.59566  3.13755  0.17855     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     39   2.94809  3.58857  0.11707  3.49333     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     40   3.08942  2.59566  3.13755  0.17855     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     41   3.43404  0.13010  3.48346  2.82967     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     42   3.08942  2.59566  3.13755  0.17855     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     43   3.43404  0.13010  3.48346  2.82967     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     44   3.08942  2.59566  3.13755  0.17855     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     45   0.14179  3.38107  2.80245  3.28281     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01860  3.99364        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bacillariophyta_58S_end_eleven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:42:57 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1905173856
+STATS LOCAL MSV       -7.3409  0.72899
+STATS LOCAL VITERBI   -8.2416  0.72899
+STATS LOCAL FORWARD   -3.1425  0.72899
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.58317  1.38125  1.35645  1.25234
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   1.89532  1.96405  1.06955  1.00436     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bacillariophyta_58S_end_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:42:02 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 890636672
+STATS LOCAL MSV       -7.3435  0.72851
+STATS LOCAL VITERBI   -8.2240  0.72851
+STATS LOCAL FORWARD   -3.2698  0.72851
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.70415  1.39193  1.19561  1.32067
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.92825  2.28391  0.95698  2.13014     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bacillariophyta_58S_end_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:41:55 2012
+NSEQ  10
+EFFN  3.911133
+CKSUM 2203677874
+STATS LOCAL MSV       -6.7587  0.71932
+STATS LOCAL VITERBI   -7.5461  0.71932
+STATS LOCAL FORWARD   -4.0750  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.79364  1.27971  1.26811  1.29402
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  0.00000        *
+      1   3.62901  0.10909  3.66977  2.96962      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+      2   3.06354  3.75846  0.10007  3.68147      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+      3   3.62901  0.10909  3.66977  2.96962      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+      4   3.26490  2.70698  3.30619  0.15268      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+      5   2.30468  2.26386  1.44279  0.57983      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+      6   3.62901  0.10909  3.66977  2.96962      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+      7   3.62901  0.10909  3.66977  2.96962      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+      8   0.43462  2.80486  1.50107  2.67242      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+      9   3.06354  3.75846  0.10007  3.68147      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     10   3.06354  3.75846  0.10007  3.68147     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     11   0.12122  3.55145  2.91224  3.46977     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     12   0.57930  2.38745  2.30805  1.39276     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     13   3.26490  2.70698  3.30619  0.15268     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     14   3.26490  2.70698  3.30619  0.15268     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     15   3.26490  2.70698  3.30619  0.15268     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     16   3.62901  0.10909  3.66977  2.96962     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     17   3.62901  0.10909  3.66977  2.96962     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     18   3.26490  2.70698  3.30619  0.15268     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     19   3.06354  3.75846  0.10007  3.68147     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     20   3.06354  3.75846  0.10007  3.68147     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     21   2.21486  2.22095  1.21311  0.72350     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     22   0.12122  3.55145  2.91224  3.46977     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     23   3.06354  3.75846  0.10007  3.68147     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     24   3.62901  0.10909  3.66977  2.96962     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     25   0.12122  3.55145  2.91224  3.46977     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     26   3.26490  2.70698  3.30619  0.15268     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     27   3.06354  3.75846  0.10007  3.68147     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     28   3.62901  0.10909  3.66977  2.96962     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     29   3.26490  2.70698  3.30619  0.15268     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     30   3.26490  2.70698  3.30619  0.15268     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     31   3.06354  3.75846  0.10007  3.68147     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     32   3.26490  2.70698  3.30619  0.15268     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     33   3.62901  0.10909  3.66977  2.96962     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     34   3.26490  2.70698  3.30619  0.15268     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     35   3.06354  3.75846  0.10007  3.68147     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     36   0.12122  3.55145  2.91224  3.46977     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     37   3.06354  3.75846  0.10007  3.68147     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     38   3.26490  2.70698  3.30619  0.15268     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     39   3.06354  3.75846  0.10007  3.68147     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     40   2.56277  1.19555  2.63128  0.60078     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     41   3.62901  0.10909  3.66977  2.96962     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     42   3.62901  0.10909  3.66977  2.96962     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     43   3.06354  3.75846  0.10007  3.68147     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     44   3.62901  0.10909  3.66977  2.96962     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03327  4.11270  4.11270  1.46634  0.26236  1.09861  0.40547
+     45   0.12122  3.55145  2.91224  3.46977     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01678  4.09620        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bacillariophyta_58S_end_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:42:40 2012
+NSEQ  4
+EFFN  3.261719
+CKSUM 2263622984
+STATS LOCAL MSV       -8.0863  0.71933
+STATS LOCAL VITERBI   -7.4913  0.71933
+STATS LOCAL FORWARD   -4.0857  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55533  1.31636  1.38475  1.30791
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  0.00000        *
+      1   3.41037  0.13295  3.46079  2.81242      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      2   2.93372  3.56771  0.11938  3.47031      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      3   3.41037  0.13295  3.46079  2.81242      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      4   3.06875  2.58250  3.11766  0.18191      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      5   3.06875  2.58250  3.11766  0.18191      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      6   3.06875  2.58250  3.11766  0.18191      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      7   3.06875  2.58250  3.11766  0.18191      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      8   2.93372  3.56771  0.11938  3.47031      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      9   2.93372  3.56771  0.11938  3.47031      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     10   2.93372  3.56771  0.11938  3.47031     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     11   3.06875  2.58250  3.11766  0.18191     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     12   0.14453  3.36055  2.78910  3.26035     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     13   0.14453  3.36055  2.78910  3.26035     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     14   3.06875  2.58250  3.11766  0.18191     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     15   2.93372  3.56771  0.11938  3.47031     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     16   3.41037  0.13295  3.46079  2.81242     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     17   3.41037  0.13295  3.46079  2.81242     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     18   3.41037  0.13295  3.46079  2.81242     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     19   0.14453  3.36055  2.78910  3.26035     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     20   0.14453  3.36055  2.78910  3.26035     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     21   2.93372  3.56771  0.11938  3.47031     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     22   0.14453  3.36055  2.78910  3.26035     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     23   2.93372  3.56771  0.11938  3.47031     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     24   3.41037  0.13295  3.46079  2.81242     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     25   0.14453  3.36055  2.78910  3.26035     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     26   3.06875  2.58250  3.11766  0.18191     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     27   2.93372  3.56771  0.11938  3.47031     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     28   3.41037  0.13295  3.46079  2.81242     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     29   3.06875  2.58250  3.11766  0.18191     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     30   3.41037  0.13295  3.46079  2.81242     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     31   0.14453  3.36055  2.78910  3.26035     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     32   3.06875  2.58250  3.11766  0.18191     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     33   3.41037  0.13295  3.46079  2.81242     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     34   3.06875  2.58250  3.11766  0.18191     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     35   2.93372  3.56771  0.11938  3.47031     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     36   0.14453  3.36055  2.78910  3.26035     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     37   2.93372  3.56771  0.11938  3.47031     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     38   3.06875  2.58250  3.11766  0.18191     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     39   2.93372  3.56771  0.11938  3.47031     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     40   3.06875  2.58250  3.11766  0.18191     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     41   3.06875  2.58250  3.11766  0.18191     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     42   3.41037  0.13295  3.46079  2.81242     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     43   3.41037  0.13295  3.46079  2.81242     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     44   3.41037  0.13295  3.46079  2.81242     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     45   0.14453  3.36055  2.78910  3.26035     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01883  3.98187        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bacillariophyta_58S_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:41:30 2012
+NSEQ  59
+EFFN  3.647888
+CKSUM 3784598376
+STATS LOCAL MSV       -7.5123  0.71931
+STATS LOCAL VITERBI   -7.6643  0.71931
+STATS LOCAL FORWARD   -3.7443  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.05601  1.44140  1.19427  1.10107
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  0.00000        *
+      1   3.41829  0.14399  3.46727  2.65739      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+      2   3.01518  3.68691  0.10686  3.60210      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+      3   3.54642  0.11747  3.59094  2.91079      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+      4   3.18936  2.65909  3.23362  0.16325      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+      5   3.18936  2.65909  3.23362  0.16325      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+      6   3.18936  2.65909  3.23362  0.16325      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+      7   3.54642  0.11747  3.59094  2.91079      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+      8   2.77197  3.57920  0.12898  3.48770      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+      9   3.01518  3.68691  0.10686  3.60210      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     10   3.01518  3.68691  0.10686  3.60210     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.11547  4.06867  2.38648  1.46634  0.26236  1.09861  0.40547
+     11   0.14684  3.34355  2.77801  3.24176     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99086  3.99086  1.46634  0.26236  0.31622  1.30526
+     12   3.18936  2.65909  3.23362  0.16325     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     13   1.98689  2.10855  2.53472  0.41222     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04625  4.06867  3.57210  1.46634  0.26236  1.09861  0.40547
+     14   3.17011  2.64688  3.21512  0.16608     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03519  4.05761  4.05761  1.46634  0.26236  0.79626  0.59968
+     15   3.18936  2.65909  3.23362  0.16325     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     16   3.54642  0.11747  3.59094  2.91079     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     17   3.54642  0.11747  3.59094  2.91079     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     18   3.22867  0.19096  3.28418  2.33560     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     19   3.01518  3.68691  0.10686  3.60210     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     20   2.46891  3.41562  0.16720  3.31221     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     21   2.58996  2.39964  2.06152  0.34677     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     22   0.12953  3.47895  2.86567  3.39012     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     23   3.01518  3.68691  0.10686  3.60210     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     24   3.54642  0.11747  3.59094  2.91079     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04625  4.06867  3.57210  1.46634  0.26236  1.09861  0.40547
+     25   0.13177  3.46027  2.85365  3.36962     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03519  4.05761  4.05761  1.46634  0.26236  0.79626  0.59968
+     26   3.18936  2.65909  3.23362  0.16325     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     27   2.50330  3.43570  0.16214  3.33373     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     28   3.54642  0.11747  3.59094  2.91079     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     29   3.18936  2.65909  3.23362  0.16325     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     30   3.18936  2.65909  3.23362  0.16325     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     31   3.01518  3.68691  0.10686  3.60210     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     32   3.18936  2.65909  3.23362  0.16325     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     33   3.35919  0.15748  3.41028  2.55223     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     34   3.18936  2.65909  3.23362  0.16325     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     35   3.01518  3.68691  0.10686  3.60210     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     36   0.12953  3.47895  2.86567  3.39012     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     37   3.01518  3.68691  0.10686  3.60210     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     38   3.18936  2.65909  3.23362  0.16325     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     39   3.01518  3.68691  0.10686  3.60210     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     40   3.18936  2.65909  3.23362  0.16325     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     41   3.54642  0.11747  3.59094  2.91079     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     42   3.18936  2.65909  3.23362  0.16325     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     43   3.01518  3.68691  0.10686  3.60210     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     44   3.05129  2.32303  3.10110  0.21106     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06867  4.06867  1.46634  0.26236  1.09861  0.40547
+     45   3.01518  3.68691  0.10686  3.60210     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01755  4.05142        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bacillariophyta_58S_end_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:42:22 2012
+NSEQ  7
+EFFN  3.380371
+CKSUM 2693198585
+STATS LOCAL MSV       -7.4165  0.71932
+STATS LOCAL VITERBI   -7.6098  0.71932
+STATS LOCAL FORWARD   -4.0200  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.57825  1.37670  1.37176  1.24621
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  0.00000        *
+      1   3.45418  0.12772  3.50274  2.84431      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+      2   2.96025  3.60628  0.11515  3.51289      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+      3   3.45418  0.12772  3.50274  2.84431      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+      4   3.10711  2.60690  3.15456  0.17572      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+      5   3.10711  2.60690  3.15456  0.17572      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+      6   3.10711  2.60690  3.15456  0.17572      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+      7   3.10711  2.60690  3.15456  0.17572      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+      8   2.96025  3.60628  0.11515  3.51289      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+      9   2.96025  3.60628  0.11515  3.51289      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     10   2.96025  3.60628  0.11515  3.51289     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     11   3.10711  2.60690  3.15456  0.17572     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     12   0.13950  3.39856  2.81379  3.30196     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     13   0.13950  3.39856  2.81379  3.30196     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     14   3.10711  2.60690  3.15456  0.17572     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     15   2.96025  3.60628  0.11515  3.51289     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     16   3.45418  0.12772  3.50274  2.84431     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     17   3.45418  0.12772  3.50274  2.84431     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     18   3.45418  0.12772  3.50274  2.84431     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     19   0.13950  3.39856  2.81379  3.30196     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     20   0.13950  3.39856  2.81379  3.30196     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     21   2.96025  3.60628  0.11515  3.51289     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     22   0.13950  3.39856  2.81379  3.30196     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     23   2.96025  3.60628  0.11515  3.51289     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     24   3.45418  0.12772  3.50274  2.84431     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     25   0.13950  3.39856  2.81379  3.30196     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     26   3.10711  2.60690  3.15456  0.17572     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     27   2.96025  3.60628  0.11515  3.51289     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     28   3.45418  0.12772  3.50274  2.84431     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     29   3.10711  2.60690  3.15456  0.17572     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     30   3.10711  2.60690  3.15456  0.17572     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     31   0.13950  3.39856  2.81379  3.30196     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     32   3.10711  2.60690  3.15456  0.17572     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     33   3.45418  0.12772  3.50274  2.84431     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     34   3.10711  2.60690  3.15456  0.17572     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     35   2.96025  3.60628  0.11515  3.51289     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     36   0.13950  3.39856  2.81379  3.30196     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     37   2.96025  3.60628  0.11515  3.51289     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     38   3.10711  2.60690  3.15456  0.17572     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     39   2.96025  3.60628  0.11515  3.51289     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     40   3.10711  2.60690  3.15456  0.17572     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     41   3.45418  0.12772  3.50274  2.84431     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     42   3.45418  0.12772  3.50274  2.84431     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     43   3.45418  0.12772  3.50274  2.84431     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     44   3.10711  2.60690  3.15456  0.17572     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02184  4.02184  1.46634  0.26236  1.09861  0.40547
+     45   0.44242  2.71377  1.53569  2.57794     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01842  4.00376        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bacillariophyta_58S_end_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:42:15 2012
+NSEQ  23
+EFFN  4.910522
+CKSUM 989768431
+STATS LOCAL MSV       -6.8527  0.71932
+STATS LOCAL VITERBI   -7.7326  0.71932
+STATS LOCAL FORWARD   -4.0652  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.90902  1.42695  1.19558  1.17375
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  0.00000        *
+      1   3.88157  0.08732  3.91039  3.14745      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+      2   3.20993  3.97473  0.08224  3.92175      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+      3   3.88157  0.08732  3.91039  3.14745      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+      4   3.50993  2.86404  3.54157  0.12319      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+      5   3.19216  2.03607  3.24025  0.23671      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+      6   3.19429  0.20047  2.53561  2.78965      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+      7   3.88157  0.08732  3.91039  3.14745      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+      8   1.06582  2.19973  1.26269  1.34006      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+      9   3.20993  3.97473  0.08224  3.92175      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     10   3.20993  3.97473  0.08224  3.92175     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     11   0.09879  3.77800  3.05894  3.71889     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     12   3.50993  2.86404  3.54157  0.12319     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     13   3.50993  2.86404  3.54157  0.12319     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     14   3.50993  2.86404  3.54157  0.12319     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     15   3.50993  2.86404  3.54157  0.12319     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     16   3.88157  0.08732  3.91039  3.14745     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     17   3.88157  0.08732  3.91039  3.14745     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     18   2.70043  0.67997  2.76952  1.01198     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     19   3.20993  3.97473  0.08224  3.92175     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     20   3.20993  3.97473  0.08224  3.92175     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     21   2.59948  1.89052  0.34474  2.71373     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     22   0.09879  3.77800  3.05894  3.71889     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     23   3.20993  3.97473  0.08224  3.92175     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     24   3.88157  0.08732  3.91039  3.14745     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     25   0.09879  3.77800  3.05894  3.71889     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     26   3.50993  2.86404  3.54157  0.12319     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     27   3.20993  3.97473  0.08224  3.92175     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     28   3.88157  0.08732  3.91039  3.14745     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     29   2.24774  2.63840  2.99460  0.25770     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     30   3.37000  2.44529  3.40918  0.16742     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     31   3.20993  3.97473  0.08224  3.92175     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     32   3.50993  2.86404  3.54157  0.12319     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     33   2.70934  0.65669  2.77834  1.04210     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     34   3.50993  2.86404  3.54157  0.12319     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     35   3.20993  3.97473  0.08224  3.92175     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     36   0.09879  3.77800  3.05894  3.71889     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     37   3.20993  3.97473  0.08224  3.92175     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     38   3.50993  2.86404  3.54157  0.12319     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     39   3.20993  3.97473  0.08224  3.92175     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     40   3.50993  2.86404  3.54157  0.12319     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     41   2.94893  0.38481  3.01361  1.52366     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     42   0.39990  2.71590  2.54745  1.68638     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     43   3.20993  3.97473  0.08224  3.92175     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     44   2.83838  1.37814  2.90080  0.45499     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02853  4.26416  4.26416  1.46634  0.26236  1.09861  0.40547
+     45   1.25375  2.88872  0.51876  2.75413     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01437  4.25000        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bacillariophyta_58S_end_ten_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:42:48 2012
+NSEQ  12
+EFFN  3.571289
+CKSUM 3994526417
+STATS LOCAL MSV       -7.4590  0.71932
+STATS LOCAL VITERBI   -7.8349  0.71932
+STATS LOCAL FORWARD   -3.7654  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.69655  1.33242  1.35217  1.22360
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  0.00000        *
+      1   3.52090  0.12021  3.56655  2.89248      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+      2   3.00009  3.66468  0.10908  3.57747      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+      3   3.52090  0.12021  3.56655  2.89248      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+      4   3.16639  2.64453  3.21155  0.16663      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+      5   3.16639  2.64453  3.21155  0.16663      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+      6   3.52090  0.12021  3.56655  2.89248      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+      7   3.16639  2.64453  3.21155  0.16663      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+      8   3.00009  3.66468  0.10908  3.57747      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+      9   3.00009  3.66468  0.10908  3.57747      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     10   3.00009  3.66468  0.10908  3.57747     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     11   3.16639  2.64453  3.21155  0.16663     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     12   3.16639  2.64453  3.21155  0.16663     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     13   0.13221  3.45665  2.85132  3.36565     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     14   3.16639  2.64453  3.21155  0.16663     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     15   3.16639  2.64453  3.21155  0.16663     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     16   3.52090  0.12021  3.56655  2.89248     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     17   3.52090  0.12021  3.56655  2.89248     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     18   3.52090  0.12021  3.56655  2.89248     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     19   0.13221  3.45665  2.85132  3.36565     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     20   3.00009  3.66468  0.10908  3.57747     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     21   3.00009  3.66468  0.10908  3.57747     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     22   0.13221  3.45665  2.85132  3.36565     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     23   3.00009  3.66468  0.10908  3.57747     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     24   3.52090  0.12021  3.56655  2.89248     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     25   0.13221  3.45665  2.85132  3.36565     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     26   3.16639  2.64453  3.21155  0.16663     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     27   0.13221  3.45665  2.85132  3.36565     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     28   3.52090  0.12021  3.56655  2.89248     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     29   3.16639  2.64453  3.21155  0.16663     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     30   3.16639  2.64453  3.21155  0.16663     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     31   0.13221  3.45665  2.85132  3.36565     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     32   3.16639  2.64453  3.21155  0.16663     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     33   3.52090  0.12021  3.56655  2.89248     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     34   3.16639  2.64453  3.21155  0.16663     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     35   3.00009  3.66468  0.10908  3.57747     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     36   0.20546  3.20130  2.30575  3.09377     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     37   3.00009  3.66468  0.10908  3.57747     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     38   3.16639  2.64453  3.21155  0.16663     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     39   3.00009  3.66468  0.10908  3.57747     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     40   3.16639  2.64453  3.21155  0.16663     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     41   3.52090  0.12021  3.56655  2.89248     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     42   3.52090  0.12021  3.56655  2.89248     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     43   2.54971  0.57954  2.62092  1.24131     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     44   3.00009  3.66468  0.10908  3.57747     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05548  4.05548  1.46634  0.26236  1.09861  0.40547
+     45   0.86869  2.55645  0.88355  2.41231     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01779  4.03800        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bacillariophyta_58S_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:41:46 2012
+NSEQ  5
+EFFN  3.647461
+CKSUM 282462996
+STATS LOCAL MSV       -7.4641  0.71933
+STATS LOCAL VITERBI   -7.7880  0.71933
+STATS LOCAL FORWARD   -4.3354  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.78844  1.55757  1.15735  1.17826
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  0.00000        *
+      1   3.54628  0.11749  3.59080  2.91069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      2   3.01510  3.68679  0.10688  3.60196      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      3   3.54628  0.11749  3.59080  2.91069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      4   3.18923  2.65900  3.23350  0.16327      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      5   3.01510  3.68679  0.10688  3.60196      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      6   3.18923  2.65900  3.23350  0.16327      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      7   3.18923  2.65900  3.23350  0.16327      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      8   3.18923  2.65900  3.23350  0.16327      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      9   3.01510  3.68679  0.10688  3.60196      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     10   3.01510  3.68679  0.10688  3.60196     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     11   3.01510  3.68679  0.10688  3.60196     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     12   0.12954  3.47883  2.86559  3.38998     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     13   0.12954  3.47883  2.86559  3.38998     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     14   3.18923  2.65900  3.23350  0.16327     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     15   3.18923  2.65900  3.23350  0.16327     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     16   3.54628  0.11749  3.59080  2.91069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     17   3.54628  0.11749  3.59080  2.91069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     18   3.18923  2.65900  3.23350  0.16327     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     19   3.01510  3.68679  0.10688  3.60196     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     20   3.01510  3.68679  0.10688  3.60196     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     21   3.54628  0.11749  3.59080  2.91069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     22   0.12954  3.47883  2.86559  3.38998     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     23   3.01510  3.68679  0.10688  3.60196     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     24   3.54628  0.11749  3.59080  2.91069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     25   0.12954  3.47883  2.86559  3.38998     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     26   3.18923  2.65900  3.23350  0.16327     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     27   3.01510  3.68679  0.10688  3.60196     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     28   3.18923  2.65900  3.23350  0.16327     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     29   3.18923  2.65900  3.23350  0.16327     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     30   3.18923  2.65900  3.23350  0.16327     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     31   3.01510  3.68679  0.10688  3.60196     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     32   3.18923  2.65900  3.23350  0.16327     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     33   3.54628  0.11749  3.59080  2.91069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     34   3.18923  2.65900  3.23350  0.16327     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     35   3.01510  3.68679  0.10688  3.60196     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     36   0.12954  3.47883  2.86559  3.38998     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     37   3.01510  3.68679  0.10688  3.60196     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     38   2.50462  1.17407  2.57418  0.62929     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     39   3.01510  3.68679  0.10688  3.60196     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     40   3.18923  2.65900  3.23350  0.16327     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     41   2.50462  1.17407  2.57418  0.62929     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     42   0.12954  3.47883  2.86559  3.38998     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     43   3.01510  3.68679  0.10688  3.60196     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     44   3.54628  0.11749  3.59080  2.91069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     45   1.12332  2.61913  0.65802  2.47627     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01755  4.05134        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bacillariophyta_58S_end_twelve_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:43:07 2012
+NSEQ  4
+EFFN  3.191406
+CKSUM 292128274
+STATS LOCAL MSV       -8.0824  0.71931
+STATS LOCAL VITERBI   -7.8114  0.71931
+STATS LOCAL FORWARD   -4.1333  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81883  1.38860  1.09146  1.37581
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  0.00000        *
+      1   3.38354  0.13628  3.43507  2.79277      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      2   2.91732  3.54398  0.12206  3.44415      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      3   3.38354  0.13628  3.43507  2.79277      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      4   3.04545  2.56765  3.09524  0.18579      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      5   3.04545  2.56765  3.09524  0.18579      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      6   3.38354  0.13628  3.43507  2.79277      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      7   3.38354  0.13628  3.43507  2.79277      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      8   2.91732  3.54398  0.12206  3.44415      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      9   2.91732  3.54398  0.12206  3.44415      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     10   2.91732  3.54398  0.12206  3.44415     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     11   0.14770  3.33730  2.77393  3.23493     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     12   0.14770  3.33730  2.77393  3.23493     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     13   0.14770  3.33730  2.77393  3.23493     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     14   3.04545  2.56765  3.09524  0.18579     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     15   2.91732  3.54398  0.12206  3.44415     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     16   3.38354  0.13628  3.43507  2.79277     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     17   3.38354  0.13628  3.43507  2.79277     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     18   3.38354  0.13628  3.43507  2.79277     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     19   2.91732  3.54398  0.12206  3.44415     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     20   2.91732  3.54398  0.12206  3.44415     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     21   3.04545  2.56765  3.09524  0.18579     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     22   0.14770  3.33730  2.77393  3.23493     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     23   2.91732  3.54398  0.12206  3.44415     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     24   3.38354  0.13628  3.43507  2.79277     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     25   0.14770  3.33730  2.77393  3.23493     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     26   3.04545  2.56765  3.09524  0.18579     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     27   2.91732  3.54398  0.12206  3.44415     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     28   3.38354  0.13628  3.43507  2.79277     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     29   3.38354  0.13628  3.43507  2.79277     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     30   3.04545  2.56765  3.09524  0.18579     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     31   2.91732  3.54398  0.12206  3.44415     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     32   2.91732  3.54398  0.12206  3.44415     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     33   3.04545  2.56765  3.09524  0.18579     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     34   3.04545  2.56765  3.09524  0.18579     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     35   2.91732  3.54398  0.12206  3.44415     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     36   0.14770  3.33730  2.77393  3.23493     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     37   2.91732  3.54398  0.12206  3.44415     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     38   3.04545  2.56765  3.09524  0.18579     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     39   2.91732  3.54398  0.12206  3.44415     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     40   3.04545  2.56765  3.09524  0.18579     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     41   3.04545  2.56765  3.09524  0.18579     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     42   3.38354  0.13628  3.43507  2.79277     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     43   2.91732  3.54398  0.12206  3.44415     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     44   3.04545  2.56765  3.09524  0.18579     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     45   2.91732  3.54398  0.12206  3.44415     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01908  3.96867        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Bacillariophyta_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:41:39 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3128468991
+STATS LOCAL MSV       -7.4839  0.72820
+STATS LOCAL VITERBI   -8.3885  0.72820
+STATS LOCAL FORWARD   -3.5934  0.72820
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.65400  1.65338  1.16290  1.18831
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Bacillariophyta_58S_start_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Oct  1 02:11:41 2011
+NSEQ  144
+EFFN  6.077637
+CKSUM 1030745055
+STATS LOCAL MSV       -6.8970  0.71932
+STATS LOCAL VITERBI   -7.5686  0.71932
+STATS LOCAL FORWARD   -4.3787  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22465  1.36279  1.47544  1.50726
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  0.00000        *
+      1   3.99350  0.09233  4.01872  2.96069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+      2   0.26673  2.37689  2.76416  2.54783      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.41614  3.73066  1.46634  0.26236  1.09861  0.40547
+      3   0.08397  3.95853  3.18118  3.91647      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02476  4.40417  4.40417  1.46634  0.26236  0.69698  0.68932
+      4   4.08931  0.07282  4.10855  3.29556      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+      5   3.60874  2.54724  3.63979  0.14115      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+      6   2.81521  2.90569  3.46061  0.15784      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.41614  3.73066  1.46634  0.26236  1.09861  0.40547
+      7   3.71512  3.00075  3.73903  0.10301      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02476  4.40417  4.40417  1.46634  0.26236  0.69698  0.68932
+      8   3.49880  0.21228  3.54875  2.02290      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+      9   0.20606  3.57886  2.05667  3.49231      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     10   2.29832  3.79341  0.15934  3.71548     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     11   3.78938  0.13609  3.82622  2.49087     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     12   0.79345  2.47005  1.14686  1.92755     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     13   0.64077  1.89059  1.47582  2.36937     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     14   3.00490  1.28502  3.06513  0.46655     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     15   3.33504  4.15230  0.07002  4.11774     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     16   3.33504  4.15230  0.07002  4.11774     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     17   0.08289  3.97284  3.19122  3.93205     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     18   3.73173  3.01214  3.75504  0.10152     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     19   3.33504  4.15230  0.07002  4.11774     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     20   3.73173  3.01214  3.75504  0.10152     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     21   4.08931  0.07282  4.10855  3.29556     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     22   2.40870  2.82458  3.26662  0.20752     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     23   0.50152  2.68344  2.57692  1.38607     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     24   2.56134  3.92766  0.12541  3.86462     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     25   3.33504  4.15230  0.07002  4.11774     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     26   1.84788  1.37699  1.54968  0.97345     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     27   3.73173  3.01214  3.75504  0.10152     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     28   3.93022  0.09244  3.54057  3.22740     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     29   3.23546  0.14449  3.66947  2.66353     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     30   3.77053  0.11478  3.15435  3.15272     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     31   0.10083  3.91055  2.90290  3.86225     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     32   2.95075  0.23869  2.49016  2.56212     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     33   0.16976  2.61407  3.00452  3.40117     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     34   0.22861  3.21085  2.88206  2.22547     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     35   3.90913  0.10987  3.93940  2.74061     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     36   2.56134  3.92766  0.12541  3.86462     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     37   0.08289  3.97284  3.19122  3.93205     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     38   3.73173  3.01214  3.75504  0.10152     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02827  4.41614  4.14791  1.46634  0.26236  1.09861  0.40547
+     39   3.22610  3.89440  0.10656  3.19397     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02455  4.41242  4.41242  1.46634  0.26236  0.92801  0.50309
+     40   0.08289  3.97284  3.19122  3.93205     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     41   0.15880  3.55611  2.73128  2.93474     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     42   3.30078  4.06617  0.08187  3.70475     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     43   0.09762  3.87464  3.15684  3.51704     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     44   0.08289  3.97284  3.19122  3.93205     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02446  4.41614  4.41614  1.46634  0.26236  1.09861  0.40547
+     45   3.80347  0.13290  3.83957  2.51762     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01230  4.40399        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Bacillariophyta_4_LSU_start_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:59:52 2012
+NSEQ  5
+EFFN  3.657227
+CKSUM 2111448149
+STATS LOCAL MSV       -7.6920  0.71932
+STATS LOCAL VITERBI   -7.6476  0.71932
+STATS LOCAL FORWARD   -3.8455  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.20593  1.21862  1.62039  1.57443
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  0.00000        *
+      1   3.54949  0.11715  3.59387  2.91298      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+      2   3.54949  0.11715  3.59387  2.91298      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+      3   3.54949  0.11715  3.59387  2.91298      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+      4   3.19213  2.66084  3.23628  0.16285      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+      5   3.01699  3.68957  0.10660  3.60505      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+      6   0.12921  3.48163  2.86740  3.39306      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+      7   3.19213  2.66084  3.23628  0.16285      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+      8   3.54949  0.11715  3.59387  2.91298      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+      9   3.19213  2.66084  3.23628  0.16285      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     10   3.54949  0.11715  3.59387  2.91298     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     11   0.12921  3.48163  2.86740  3.39306     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     12   3.01699  3.68957  0.10660  3.60505     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     13   3.54949  0.11715  3.59387  2.91298     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     14   3.19213  2.66084  3.23628  0.16285     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     15   3.54949  0.11715  3.59387  2.91298     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     16   0.12921  3.48163  2.86740  3.39306     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     17   0.12921  3.48163  2.86740  3.39306     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     18   0.12921  3.48163  2.86740  3.39306     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     19   3.54949  0.11715  3.59387  2.91298     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     20   0.12921  3.48163  2.86740  3.39306     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     21   0.12921  3.48163  2.86740  3.39306     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     22   3.01699  3.68957  0.10660  3.60505     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     23   3.01699  3.68957  0.10660  3.60505     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     24   2.14931  2.23541  0.80168  1.11501     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     25   2.14931  2.23541  0.80168  1.11501     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     26   0.12921  3.48163  2.86740  3.39306     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     27   3.54949  0.11715  3.59387  2.91298     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     28   3.54949  0.11715  3.59387  2.91298     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     29   3.54949  0.11715  3.59387  2.91298     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     30   3.01699  3.68957  0.10660  3.60505     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     31   3.54949  0.11715  3.59387  2.91298     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     32   3.19213  2.66084  3.23628  0.16285     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     33   3.01699  3.68957  0.10660  3.60505     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     34   0.12921  3.48163  2.86740  3.39306     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     35   0.12921  3.48163  2.86740  3.39306     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     36   2.48946  0.73109  2.56123  1.02596     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     37   3.19213  2.66084  3.23628  0.16285     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     38   3.19213  2.66084  3.23628  0.16285     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     39   0.12921  3.48163  2.86740  3.39306     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     40   0.12921  3.48163  2.86740  3.39306     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     41   3.01699  3.68957  0.10660  3.60505     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     42   3.54949  0.11715  3.59387  2.91298     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     43   0.12921  3.48163  2.86740  3.39306     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     44   3.19213  2.66084  3.23628  0.16285     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03474  4.07026  4.07026  1.46634  0.26236  1.09861  0.40547
+     45   0.12921  3.48163  2.86740  3.39306     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01752  4.05304        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Bacillariophyta_4_LSU_start_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:59:43 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3289991583
+STATS LOCAL MSV       -7.5573  0.72794
+STATS LOCAL VITERBI   -8.1212  0.72794
+STATS LOCAL FORWARD   -3.3703  0.72794
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23978  1.40458  1.43017  1.48805
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Bacillariophyta_4_LSU_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:59:19 2012
+NSEQ  40
+EFFN  3.999023
+CKSUM 706348853
+STATS LOCAL MSV       -7.2263  0.71931
+STATS LOCAL VITERBI   -7.6120  0.71931
+STATS LOCAL FORWARD   -3.8186  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.14058  1.36426  1.52942  1.56957
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  0.00000        *
+      1   2.44979  2.56427  2.94985  0.24288      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+      2   2.54426  1.07425  2.61378  0.67992      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+      3   3.50322  0.13678  3.54889  2.67387      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+      4   2.20358  2.29709  0.74699  1.15439      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+      5   3.07859  3.78078  0.09805  3.70627      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+      6   0.15910  3.34062  2.82940  2.94454      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+      7   3.28900  2.72228  3.32934  0.14947      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+      8   3.65491  0.10660  3.69447  2.98796      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+      9   3.28900  2.72228  3.32934  0.14947      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     10   3.65491  0.10660  3.69447  2.98796     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     11   0.11873  3.57431  2.92691  3.49490     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     12   3.07859  3.78078  0.09805  3.70627     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     13   0.30331  2.14137  2.57045  2.69362     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     14   3.28900  2.72228  3.32934  0.14947     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     15   3.65491  0.10660  3.69447  2.98796     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     16   0.11873  3.57431  2.92691  3.49490     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     17   0.11873  3.57431  2.92691  3.49490     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     18   3.07859  3.78078  0.09805  3.70627     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     19   3.43616  0.15164  3.48450  2.55302     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     20   0.11873  3.57431  2.92691  3.49490     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     21   0.11873  3.57431  2.92691  3.49490     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     22   3.07859  3.78078  0.09805  3.70627     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     23   0.14321  3.47772  2.67523  3.39148     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     24   1.21241  2.20089  0.91483  1.65428     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     25   3.07859  3.78078  0.09805  3.70627     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     26   0.11873  3.57431  2.92691  3.49490     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     27   3.65491  0.10660  3.69447  2.98796     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     28   3.65491  0.10660  3.69447  2.98796     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     29   3.65491  0.10660  3.69447  2.98796     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     30   3.07859  3.78078  0.09805  3.70627     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     31   3.65491  0.10660  3.69447  2.98796     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     32   3.18188  0.22051  3.23916  2.14400     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     33   3.07859  3.78078  0.09805  3.70627     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     34   0.11873  3.57431  2.92691  3.49490     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     35   0.11873  3.57431  2.92691  3.49490     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     36   3.28900  2.72228  3.32934  0.14947     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     37   3.28900  2.72228  3.32934  0.14947     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     38   3.28900  2.72228  3.32934  0.14947     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     39   0.11873  3.57431  2.92691  3.49490     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     40   0.11873  3.57431  2.92691  3.49490     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     41   3.07859  3.78078  0.09805  3.70627     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     42   3.65491  0.10660  3.69447  2.98796     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     43   0.11873  3.57431  2.92691  3.49490     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     44   3.28900  2.72228  3.32934  0.14947     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03280  4.12698  4.12698  1.46634  0.26236  1.09861  0.40547
+     45   0.11873  3.57431  2.92691  3.49490     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01653  4.11071        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Bacillariophyta_4_LSU_start_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 12:00:01 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 274407066
+STATS LOCAL MSV       -7.5697  0.72844
+STATS LOCAL VITERBI   -7.9859  0.72844
+STATS LOCAL FORWARD   -3.2875  0.72844
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.14546  1.45292  1.63473  1.37424
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Bacillariophyta_4_LSU_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:59:35 2012
+NSEQ  15
+EFFN  3.643799
+CKSUM 2793155846
+STATS LOCAL MSV       -7.7992  0.71932
+STATS LOCAL VITERBI   -7.4552  0.71932
+STATS LOCAL FORWARD   -3.9887  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.10595  1.60246  1.61822  1.31136
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  0.00000        *
+      1   3.18815  2.65832  3.23245  0.16343      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+      2   0.12967  3.47777  2.86492  3.38883      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+      3   3.18815  2.65832  3.23245  0.16343      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+      4   3.01439  3.68574  0.10698  3.60080      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+      5   1.33274  2.70507  0.52349  2.56483      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+      6   0.12967  3.47777  2.86492  3.38883      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+      7   3.18815  2.65832  3.23245  0.16343      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+      8   3.54508  0.11761  3.58965  2.90982      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+      9   3.18815  2.65832  3.23245  0.16343      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     10   3.54508  0.11761  3.58965  2.90982     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     11   0.12967  3.47777  2.86492  3.38883     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     12   3.01439  3.68574  0.10698  3.60080     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     13   0.12967  3.47777  2.86492  3.38883     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     14   3.18815  2.65832  3.23245  0.16343     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     15   3.18815  2.65832  3.23245  0.16343     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     16   0.51418  2.68429  1.36497  2.54654     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     17   0.12967  3.47777  2.86492  3.38883     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     18   3.01439  3.68574  0.10698  3.60080     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     19   3.18815  2.65832  3.23245  0.16343     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     20   0.12967  3.47777  2.86492  3.38883     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     21   0.12967  3.47777  2.86492  3.38883     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     22   3.01439  3.68574  0.10698  3.60080     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     23   0.12967  3.47777  2.86492  3.38883     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     24   3.54508  0.11761  3.58965  2.90982     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     25   3.18815  2.65832  3.23245  0.16343     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     26   0.12967  3.47777  2.86492  3.38883     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     27   3.54508  0.11761  3.58965  2.90982     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     28   3.54508  0.11761  3.58965  2.90982     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     29   3.54508  0.11761  3.58965  2.90982     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     30   3.01439  3.68574  0.10698  3.60080     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     31   3.54508  0.11761  3.58965  2.90982     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     32   2.74213  1.70504  2.80382  0.36640     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     33   3.01439  3.68574  0.10698  3.60080     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     34   0.12967  3.47777  2.86492  3.38883     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     35   0.12967  3.47777  2.86492  3.38883     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     36   3.18815  2.65832  3.23245  0.16343     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     37   3.18815  2.65832  3.23245  0.16343     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     38   3.18815  2.65832  3.23245  0.16343     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     39   0.12967  3.47777  2.86492  3.38883     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     40   0.12967  3.47777  2.86492  3.38883     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     41   3.01439  3.68574  0.10698  3.60080     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     42   3.54508  0.11761  3.58965  2.90982     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     43   0.12967  3.47777  2.86492  3.38883     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     44   3.18815  2.65832  3.23245  0.16343     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03482  4.06797  4.06797  1.46634  0.26236  1.09861  0.40547
+     45   0.12967  3.47777  2.86492  3.38883     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01756  4.05071        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Bacillariophyta_4_LSU_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 11:59:28 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 53972170
+STATS LOCAL MSV       -7.5197  0.72823
+STATS LOCAL VITERBI   -8.1408  0.72823
+STATS LOCAL FORWARD   -3.1060  0.72823
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.19216  1.39756  1.56314  1.42812
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Bacillariophyta_1_SSU_end_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Oct  1 01:59:06 2011
+NSEQ  44
+EFFN  3.225342
+CKSUM 3533706599
+STATS LOCAL MSV       -8.0048  0.71933
+STATS LOCAL VITERBI   -7.6830  0.71933
+STATS LOCAL FORWARD   -4.1089  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27189  1.62644  1.24659  1.44567
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  0.00000        *
+      1   0.14615  3.34859  2.78130  3.24727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+      2   2.92530  3.55551  0.12075  3.45686      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+      3   3.05675  2.57485  3.10612  0.18390      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+      4   3.39657  0.13465  3.44756  2.80232      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+      5   2.92530  3.55551  0.12075  3.45686      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+      6   3.05675  2.57485  3.10612  0.18390      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+      7   0.14615  3.34859  2.78130  3.24727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+      8   0.14615  3.34859  2.78130  3.24727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+      9   3.39657  0.13465  3.44756  2.80232      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     10   0.14615  3.34859  2.78130  3.24727     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     11   0.14615  3.34859  2.78130  3.24727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     12   2.92530  3.55551  0.12075  3.45686     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     13   2.92530  3.55551  0.12075  3.45686     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     14   3.05675  2.57485  3.10612  0.18390     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     15   3.05675  2.57485  3.10612  0.18390     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     16   3.05675  2.57485  3.10612  0.18390     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     17   3.39657  0.13465  3.44756  2.80232     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     18   3.39657  0.13465  3.44756  2.80232     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     19   2.92530  3.55551  0.12075  3.45686     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     20   3.05675  2.57485  3.10612  0.18390     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     21   0.14615  3.34859  2.78130  3.24727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     22   2.92530  3.55551  0.12075  3.45686     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     23   2.92530  3.55551  0.12075  3.45686     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     24   3.05675  2.57485  3.10612  0.18390     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     25   2.92530  3.55551  0.12075  3.45686     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     26   0.14615  3.34859  2.78130  3.24727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     27   0.14615  3.34859  2.78130  3.24727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     28   3.39657  0.13465  3.44756  2.80232     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     29   3.39657  0.13465  3.44756  2.80232     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     30   3.05675  2.57485  3.10612  0.18390     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     31   2.92530  3.55551  0.12075  3.45686     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     32   3.39657  0.13465  3.44756  2.80232     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     33   2.92530  3.55551  0.12075  3.45686     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     34   2.92530  3.55551  0.12075  3.45686     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     35   0.14615  3.34859  2.78130  3.24727     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     36   0.14615  3.34859  2.78130  3.24727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     37   2.92530  3.55551  0.12075  3.45686     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     38   2.92530  3.55551  0.12075  3.45686     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     39   0.14615  3.34859  2.78130  3.24727     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     40   3.05675  2.57485  3.10612  0.18390     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     41   3.39657  0.13465  3.44756  2.80232     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     42   0.14615  3.34859  2.78130  3.24727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     43   3.05675  2.57485  3.10612  0.18390     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     44   3.05675  2.57485  3.10612  0.18390     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     45   0.14615  3.34859  2.78130  3.24727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01896  3.97506        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/C.hmm.h3f
Binary file ITSx_db/HMMs/C.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/C.hmm.h3i
Binary file ITSx_db/HMMs/C.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/C.hmm.h3m
Binary file ITSx_db/HMMs/C.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/C.hmm.h3p
Binary file ITSx_db/HMMs/C.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/D.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/D.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,3875 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Amoebozoa_58S_end_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 23:03:49 2012
+NSEQ  5
+EFFN  3.198242
+CKSUM 1352929219
+STATS LOCAL MSV       -8.1195  0.71934
+STATS LOCAL VITERBI   -7.8448  0.71934
+STATS LOCAL FORWARD   -3.8579  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.36165  1.09112  1.20867  1.30453
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  0.00000        *
+      1   0.14739  3.33958  2.77542  3.23743      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      2   3.38618  0.13595  3.43760  2.79470      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      3   2.91894  3.54631  0.12180  3.44673      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      4   3.04773  2.56910  3.09744  0.18541      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      5   2.91894  3.54631  0.12180  3.44673      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      6   3.38618  0.13595  3.43760  2.79470      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      7   2.91894  3.54631  0.12180  3.44673      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      8   2.91894  3.54631  0.12180  3.44673      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      9   3.38618  0.13595  3.43760  2.79470      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     10   3.38618  0.13595  3.43760  2.79470     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     11   3.04773  2.56910  3.09744  0.18541     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     12   3.38618  0.13595  3.43760  2.79470     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     13   2.91894  3.54631  0.12180  3.44673     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     14   3.04773  2.56910  3.09744  0.18541     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     15   3.38618  0.13595  3.43760  2.79470     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     16   3.04773  2.56910  3.09744  0.18541     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     17   3.04773  2.56910  3.09744  0.18541     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     18   3.38618  0.13595  3.43760  2.79470     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     19   2.91894  3.54631  0.12180  3.44673     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     20   2.91894  3.54631  0.12180  3.44673     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     21   0.14739  3.33958  2.77542  3.23743     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     22   3.38618  0.13595  3.43760  2.79470     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     23   2.91894  3.54631  0.12180  3.44673     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     24   3.38618  0.13595  3.43760  2.79470     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     25   3.04773  2.56910  3.09744  0.18541     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     26   2.91894  3.54631  0.12180  3.44673     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     27   2.91894  3.54631  0.12180  3.44673     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     28   3.38618  0.13595  3.43760  2.79470     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     29   3.38618  0.13595  3.43760  2.79470     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     30   3.38618  0.13595  3.43760  2.79470     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     31   3.04773  2.56910  3.09744  0.18541     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     32   3.38618  0.13595  3.43760  2.79470     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     33   3.04773  2.56910  3.09744  0.18541     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     34   3.04773  2.56910  3.09744  0.18541     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     35   2.91894  3.54631  0.12180  3.44673     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     36   2.91894  3.54631  0.12180  3.44673     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     37   3.38618  0.13595  3.43760  2.79470     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     38   3.04773  2.56910  3.09744  0.18541     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     39   3.04773  2.56910  3.09744  0.18541     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     40   2.91894  3.54631  0.12180  3.44673     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     41   3.38618  0.13595  3.43760  2.79470     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     42   3.38618  0.13595  3.43760  2.79470     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     43   3.04773  2.56910  3.09744  0.18541     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     44   3.04773  2.56910  3.09744  0.18541     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     45   2.91894  3.54631  0.12180  3.44673     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01905  3.96996        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Amoebozoa_58S_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 23:03:22 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2956303962
+STATS LOCAL MSV       -7.6683  0.72805
+STATS LOCAL VITERBI   -8.2257  0.72805
+STATS LOCAL FORWARD   -3.2732  0.72805
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92481  1.13424  1.33224  1.31474
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.81865  0.23582  2.88868  2.35662     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.53331  3.02441  0.20344  2.88069     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.57915  2.25909  2.64442  0.28946     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.53331  3.02441  0.20344  2.88069     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Amoebozoa_58S_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 23:03:40 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3482197706
+STATS LOCAL MSV       -7.9368  0.72097
+STATS LOCAL VITERBI   -7.9470  0.72097
+STATS LOCAL FORWARD   -3.8220  0.72097
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.16502  1.08740  1.26141  1.32838
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.42796  0.63000  2.50086  1.21343     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   3.30705  0.14631  3.36166  2.73626     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.86982  3.47591  0.13017  3.36931     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.42796  0.63000  2.50086  1.21343     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.97980  2.52563  3.03204  0.19727     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.86982  3.47591  0.13017  3.36931     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Amoebozoa_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 23:03:29 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3221230878
+STATS LOCAL MSV       -8.1908  0.72028
+STATS LOCAL VITERBI   -7.8625  0.72028
+STATS LOCAL FORWARD   -4.0676  0.72028
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.17869  1.14382  1.26619  1.25069
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   3.30705  0.14631  3.36166  2.73626     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.86982  3.47591  0.13017  3.36931     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.97980  2.52563  3.03204  0.19727     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.86982  3.47591  0.13017  3.36931     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Amoebozoa_58S_start_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 22:47:41 2012
+NSEQ  5
+EFFN  3.266602
+CKSUM 3193284995
+STATS LOCAL MSV       -8.0914  0.71931
+STATS LOCAL VITERBI   -7.6850  0.71931
+STATS LOCAL FORWARD   -4.3591  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55227  1.31654  1.38656  1.30845
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  0.00000        *
+      1   3.41221  0.13273  3.46255  2.81376      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+      2   0.14431  3.36214  2.79014  3.26209      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+      3   0.14431  3.36214  2.79014  3.26209      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+      4   3.41221  0.13273  3.46255  2.81376      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+      5   3.07035  2.58352  3.11920  0.18165      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+      6   3.07035  2.58352  3.11920  0.18165      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+      7   3.07035  2.58352  3.11920  0.18165      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+      8   0.14431  3.36214  2.79014  3.26209      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+      9   3.41221  0.13273  3.46255  2.81376      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     10   3.41221  0.13273  3.46255  2.81376     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     11   0.14431  3.36214  2.79014  3.26209     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     12   3.41221  0.13273  3.46255  2.81376     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     13   3.41221  0.13273  3.46255  2.81376     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     14   2.93484  3.56933  0.11920  3.47210     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     15   3.07035  2.58352  3.11920  0.18165     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     16   3.07035  2.58352  3.11920  0.18165     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     17   0.14431  3.36214  2.79014  3.26209     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     18   2.93484  3.56933  0.11920  3.47210     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     19   2.93484  3.56933  0.11920  3.47210     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     20   3.41221  0.13273  3.46255  2.81376     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     21   2.93484  3.56933  0.11920  3.47210     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     22   0.14431  3.36214  2.79014  3.26209     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     23   3.07035  2.58352  3.11920  0.18165     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     24   2.93484  3.56933  0.11920  3.47210     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     25   2.93484  3.56933  0.11920  3.47210     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     26   0.14431  3.36214  2.79014  3.26209     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     27   3.07035  2.58352  3.11920  0.18165     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     28   3.07035  2.58352  3.11920  0.18165     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     29   2.93484  3.56933  0.11920  3.47210     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     30   3.07035  2.58352  3.11920  0.18165     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     31   3.07035  2.58352  3.11920  0.18165     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     32   0.14431  3.36214  2.79014  3.26209     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     33   2.93484  3.56933  0.11920  3.47210     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     34   2.93484  3.56933  0.11920  3.47210     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     35   3.07035  2.58352  3.11920  0.18165     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     36   0.14431  3.36214  2.79014  3.26209     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     37   3.41221  0.13273  3.46255  2.81376     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     38   3.41221  0.13273  3.46255  2.81376     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     39   3.41221  0.13273  3.46255  2.81376     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     40   2.93484  3.56933  0.11920  3.47210     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     41   3.41221  0.13273  3.46255  2.81376     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     42   3.07035  2.58352  3.11920  0.18165     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     43   3.07035  2.58352  3.11920  0.18165     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     44   3.41221  0.13273  3.46255  2.81376     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     45   2.93484  3.56933  0.11920  3.47210     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01881  3.98278        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Amoebozoa_58S_start_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 22:47:33 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3037931376
+STATS LOCAL MSV       -8.1113  0.72021
+STATS LOCAL VITERBI   -7.5925  0.72021
+STATS LOCAL FORWARD   -4.1062  0.72021
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55125  1.20479  1.38724  1.43339
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   3.30705  0.14631  3.36166  2.73626     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.86982  3.47591  0.13017  3.36931     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   3.30705  0.14631  3.36166  2.73626     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.86982  3.47591  0.13017  3.36931     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.97980  2.52563  3.03204  0.19727     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   0.15719  3.27118  2.73043  3.16274     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.86982  3.47591  0.13017  3.36931     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.97980  2.52563  3.03204  0.19727     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   3.30705  0.14631  3.36166  2.73626     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   3.30705  0.14631  3.36166  2.73626     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.86982  3.47591  0.13017  3.36931     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.97980  2.52563  3.03204  0.19727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Amoebozoa_58S_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 22:47:04 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3357680575
+STATS LOCAL MSV       -7.5301  0.72805
+STATS LOCAL VITERBI   -8.1447  0.72805
+STATS LOCAL FORWARD   -3.6436  0.72805
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.52137  1.28488  1.38085  1.37225
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.57915  2.25909  2.64442  0.28946     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.57915  2.25909  2.64442  0.28946     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.81865  0.23582  2.88868  2.35662     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.81865  0.23582  2.88868  2.35662     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.53331  3.02441  0.20344  2.88069     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Amoebozoa_58S_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 22:47:24 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 993253840
+STATS LOCAL MSV       -7.5156  0.72805
+STATS LOCAL VITERBI   -8.1384  0.72805
+STATS LOCAL FORWARD   -3.5209  0.72805
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.52247  1.28387  1.38089  1.37236
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
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+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Amoebozoa_58S_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 22:47:15 2012
+NSEQ  4
+EFFN  3.175781
+CKSUM 253078905
+STATS LOCAL MSV       -8.1442  0.71933
+STATS LOCAL VITERBI   -7.5796  0.71933
+STATS LOCAL FORWARD   -4.2294  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47959  1.15119  1.38788  1.57791
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  0.00000        *
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+      2   0.14843  3.33206  2.77050  3.22920      2 - -
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+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     45   2.91360  3.53861  0.12268  3.43825     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01914  3.96571        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Amoebozoa_4_LSU_start_onea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 23:25:49 2012
+NSEQ  51
+EFFN  3.408508
+CKSUM 3712596225
+STATS LOCAL MSV       -7.7739  0.71932
+STATS LOCAL VITERBI   -7.6712  0.71932
+STATS LOCAL FORWARD   -4.0000  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   0.96530  1.36587  1.68894  1.71893
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  0.00000        *
+      1   2.68706  3.32674  0.16517  3.03111      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+      2   3.46430  0.12655  3.51242  2.85165      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+      3   0.16058  3.32313  2.62437  3.22332      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+      4   0.13837  3.40735  2.81949  3.31159      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+      5   2.96633  3.61517  0.11420  3.52270      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+      6   0.13837  3.40735  2.81949  3.31159      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+      7   3.46430  0.12655  3.51242  2.85165      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+      8   3.46430  0.12655  3.51242  2.85165      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+      9   3.11604  2.61257  3.16314  0.17432      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     10   3.46430  0.12655  3.51242  2.85165     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     11   0.13837  3.40735  2.81949  3.31159     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     12   0.13837  3.40735  2.81949  3.31159     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     13   0.13837  3.40735  2.81949  3.31159     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     14   3.11604  2.61257  3.16314  0.17432     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     15   3.46430  0.12655  3.51242  2.85165     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     16   0.13837  3.40735  2.81949  3.31159     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     17   0.13837  3.40735  2.81949  3.31159     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     18   0.17671  3.20419  2.73061  2.87869     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     19   3.34985  0.15124  3.40150  2.63187     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     20   0.13837  3.40735  2.81949  3.31159     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     21   0.13837  3.40735  2.81949  3.31159     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     22   2.96633  3.61517  0.11420  3.52270     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     23   2.96633  3.61517  0.11420  3.52270     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     24   0.13837  3.40735  2.81949  3.31159     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     25   3.11604  2.61257  3.16314  0.17432     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     26   0.13837  3.40735  2.81949  3.31159     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     27   3.46430  0.12655  3.51242  2.85165     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     28   3.46430  0.12655  3.51242  2.85165     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     29   3.46430  0.12655  3.51242  2.85165     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     30   2.96633  3.61517  0.11420  3.52270     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     31   3.46430  0.12655  3.51242  2.85165     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     32   3.11604  2.61257  3.16314  0.17432     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     33   2.96633  3.61517  0.11420  3.52270     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     34   0.13837  3.40735  2.81949  3.31159     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     35   0.13837  3.40735  2.81949  3.31159     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     36   2.44645  0.73953  2.51879  1.03422     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     37   3.11604  2.61257  3.16314  0.17432     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     38   3.11604  2.61257  3.16314  0.17432     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     39   0.13837  3.40735  2.81949  3.31159     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     40   0.13837  3.40735  2.81949  3.31159     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     41   2.96633  3.61517  0.11420  3.52270     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     42   3.46430  0.12655  3.51242  2.85165     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     43   0.13837  3.40735  2.81949  3.31159     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     44   3.11604  2.61257  3.16314  0.17432     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
+     45   0.13837  3.40735  2.81949  3.31159     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01832  4.00888        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Amoebozoa_4_LSU_start_oneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 23:25:57 2012
+NSEQ  6
+EFFN  3.559570
+CKSUM 4179308964
+STATS LOCAL MSV       -7.6411  0.71932
+STATS LOCAL VITERBI   -7.6553  0.71932
+STATS LOCAL FORWARD   -3.8849  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.09739  1.36145  1.63014  1.54147
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  0.00000        *
+      1   2.09189  1.01591  0.96609  2.01061      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+      2   0.13263  3.45319  2.84909  3.36185      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+      3   3.16284  2.64227  3.20813  0.16716      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+      4   3.51693  0.12064  3.56276  2.88963      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+      5   2.99774  3.66122  0.10943  3.57364      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+      6   0.13263  3.45319  2.84909  3.36185      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+      7   3.51693  0.12064  3.56276  2.88963      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+      8   3.51693  0.12064  3.56276  2.88963      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+      9   3.16284  2.64227  3.20813  0.16716      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     10   3.51693  0.12064  3.56276  2.88963     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     11   0.13263  3.45319  2.84909  3.36185     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     12   0.13263  3.45319  2.84909  3.36185     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     13   0.13263  3.45319  2.84909  3.36185     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     14   3.16284  2.64227  3.20813  0.16716     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     15   3.51693  0.12064  3.56276  2.88963     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     16   0.13263  3.45319  2.84909  3.36185     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     17   0.13263  3.45319  2.84909  3.36185     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     18   2.99774  3.66122  0.10943  3.57364     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     19   3.16284  2.64227  3.20813  0.16716     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     20   2.99774  3.66122  0.10943  3.57364     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     21   0.13263  3.45319  2.84909  3.36185     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     22   2.99774  3.66122  0.10943  3.57364     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     23   0.13263  3.45319  2.84909  3.36185     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     24   2.12338  2.17434  0.99832  0.92082     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     25   3.16284  2.64227  3.20813  0.16716     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     26   0.13263  3.45319  2.84909  3.36185     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     27   3.51693  0.12064  3.56276  2.88963     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     28   3.51693  0.12064  3.56276  2.88963     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     29   3.51693  0.12064  3.56276  2.88963     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     30   2.99774  3.66122  0.10943  3.57364     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     31   3.51693  0.12064  3.56276  2.88963     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     32   3.16284  2.64227  3.20813  0.16716     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     33   2.99774  3.66122  0.10943  3.57364     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     34   0.13263  3.45319  2.84909  3.36185     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     35   0.13263  3.45319  2.84909  3.36185     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     36   3.51693  0.12064  3.56276  2.88963     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     37   3.16284  2.64227  3.20813  0.16716     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     38   3.16284  2.64227  3.20813  0.16716     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     39   0.13263  3.45319  2.84909  3.36185     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     40   0.13263  3.45319  2.84909  3.36185     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     41   2.99774  3.66122  0.10943  3.57364     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     42   3.51693  0.12064  3.56276  2.88963     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     43   0.13263  3.45319  2.84909  3.36185     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     44   3.16284  2.64227  3.20813  0.16716     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     45   0.13263  3.45319  2.84909  3.36185     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01783  4.03593        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Amoebozoa_4_LSU_start_onec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 23:26:03 2012
+NSEQ  63
+EFFN  3.318420
+CKSUM 1512418120
+STATS LOCAL MSV       -8.1399  0.71933
+STATS LOCAL VITERBI   -7.6092  0.71933
+STATS LOCAL FORWARD   -3.8899  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16320  1.31838  1.69977  1.43877
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  0.00000        *
+      1   3.02134  2.43366  3.07178  0.20186      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+      2   3.43153  0.13040  3.48106  2.82785      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+      3   0.14208  3.37890  2.80104  3.28043      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+      4   3.43153  0.13040  3.48106  2.82785      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+      5   2.94658  3.58637  0.11731  3.49090      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+      6   0.14208  3.37890  2.80104  3.28043      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+      7   3.43153  0.13040  3.48106  2.82785      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+      8   3.43153  0.13040  3.48106  2.82785      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+      9   3.08723  2.59426  3.13544  0.17890      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     10   3.43153  0.13040  3.48106  2.82785     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     11   0.14208  3.37890  2.80104  3.28043     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     12   2.73608  2.52824  2.97503  0.21774     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     13   0.14208  3.37890  2.80104  3.28043     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     14   3.02134  2.43366  3.07178  0.20186     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     15   3.43153  0.13040  3.48106  2.82785     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     16   0.14208  3.37890  2.80104  3.28043     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     17   0.14208  3.37890  2.80104  3.28043     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     18   2.94658  3.58637  0.11731  3.49090     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     19   3.08723  2.59426  3.13544  0.17890     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     20   2.94658  3.58637  0.11731  3.49090     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     21   0.14208  3.37890  2.80104  3.28043     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     22   2.94658  3.58637  0.11731  3.49090     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     23   0.14208  3.37890  2.80104  3.28043     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     24   3.08723  2.59426  3.13544  0.17890     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     25   3.08723  2.59426  3.13544  0.17890     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     26   0.14208  3.37890  2.80104  3.28043     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     27   3.43153  0.13040  3.48106  2.82785     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     28   3.43153  0.13040  3.48106  2.82785     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     29   3.43153  0.13040  3.48106  2.82785     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     30   2.94658  3.58637  0.11731  3.49090     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     31   3.43153  0.13040  3.48106  2.82785     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     32   3.08723  2.59426  3.13544  0.17890     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     33   2.94658  3.58637  0.11731  3.49090     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     34   0.14208  3.37890  2.80104  3.28043     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     35   0.14208  3.37890  2.80104  3.28043     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     36   3.43153  0.13040  3.48106  2.82785     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     37   3.08723  2.59426  3.13544  0.17890     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     38   3.08723  2.59426  3.13544  0.17890     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     39   0.14208  3.37890  2.80104  3.28043     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     40   0.14208  3.37890  2.80104  3.28043     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     41   2.89044  3.47872  0.12838  3.37899     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     42   3.43153  0.13040  3.48106  2.82785     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     43   0.14208  3.37890  2.80104  3.28043     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     44   3.08723  2.59426  3.13544  0.17890     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
+     45   0.14208  3.37890  2.80104  3.28043     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01863  3.99239        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Amoebozoa_4_LSU_start_oned_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 23:26:08 2012
+NSEQ  24
+EFFN  3.301758
+CKSUM 3316240930
+STATS LOCAL MSV       -8.1199  0.71932
+STATS LOCAL VITERBI   -7.7229  0.71932
+STATS LOCAL FORWARD   -3.9195  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.06159  1.38916  1.79405  1.43329
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  0.00000        *
+      1   3.08183  2.59083  3.13024  0.17977      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      2   0.14279  3.37354  2.79756  3.27457      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      3   3.08183  2.59083  3.13024  0.17977      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      4   3.42536  0.13114  3.47515  2.82335      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      5   0.14279  3.37354  2.79756  3.27457      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      6   0.14279  3.37354  2.79756  3.27457      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      7   3.42536  0.13114  3.47515  2.82335      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      8   3.42536  0.13114  3.47515  2.82335      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      9   3.08183  2.59083  3.13024  0.17977      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     10   3.42536  0.13114  3.47515  2.82335     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     11   0.14279  3.37354  2.79756  3.27457     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     12   0.14279  3.37354  2.79756  3.27457     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     13   0.14279  3.37354  2.79756  3.27457     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     14   3.08183  2.59083  3.13024  0.17977     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     15   3.42536  0.13114  3.47515  2.82335     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     16   0.14279  3.37354  2.79756  3.27457     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     17   0.14279  3.37354  2.79756  3.27457     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     18   2.94283  3.58093  0.11791  3.48489     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     19   3.08183  2.59083  3.13024  0.17977     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     20   2.94283  3.58093  0.11791  3.48489     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     21   0.14279  3.37354  2.79756  3.27457     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     22   2.94283  3.58093  0.11791  3.48489     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     23   0.14279  3.37354  2.79756  3.27457     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     24   3.08183  2.59083  3.13024  0.17977     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     25   3.08183  2.59083  3.13024  0.17977     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     26   0.14279  3.37354  2.79756  3.27457     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     27   3.42536  0.13114  3.47515  2.82335     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     28   3.42536  0.13114  3.47515  2.82335     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     29   3.42536  0.13114  3.47515  2.82335     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     30   2.94283  3.58093  0.11791  3.48489     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     31   3.42536  0.13114  3.47515  2.82335     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     32   3.08183  2.59083  3.13024  0.17977     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     33   2.94283  3.58093  0.11791  3.48489     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     34   0.14279  3.37354  2.79756  3.27457     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     35   0.14279  3.37354  2.79756  3.27457     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     36   3.42536  0.13114  3.47515  2.82335     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     37   3.08183  2.59083  3.13024  0.17977     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     38   3.08183  2.59083  3.13024  0.17977     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     39   0.14279  3.37354  2.79756  3.27457     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     40   0.14279  3.37354  2.79756  3.27457     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     41   2.94283  3.58093  0.11791  3.48489     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     42   3.42536  0.13114  3.47515  2.82335     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     43   0.14279  3.37354  2.79756  3.27457     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     44   3.08183  2.59083  3.13024  0.17977     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     45   0.14279  3.37354  2.79756  3.27457     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01869  3.98931        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Amoebozoa_4_LSU_start_threea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 23:27:32 2012
+NSEQ  91
+EFFN  3.357513
+CKSUM 3218427169
+STATS LOCAL MSV       -8.0690  0.71933
+STATS LOCAL VITERBI   -7.5442  0.71933
+STATS LOCAL FORWARD   -4.3497  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34181  1.24914  1.80713  1.24565
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  0.00000        *
+      1   0.14044  3.39135  2.80912  3.29407      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+      2   3.09981  2.60227  3.14754  0.17688      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+      3   3.09981  2.60227  3.14754  0.17688      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+      4   3.44588  0.12869  3.49480  2.83829      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+      5   3.44588  0.12869  3.49480  2.83829      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+      6   2.95525  3.59899  0.11594  3.50483      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+      7   3.44588  0.12869  3.49480  2.83829      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+      8   3.44588  0.12869  3.49480  2.83829      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+      9   3.09981  2.60227  3.14754  0.17688      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     10   3.44588  0.12869  3.49480  2.83829     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     11   0.14044  3.39135  2.80912  3.29407     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     12   3.44588  0.12869  3.49480  2.83829     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     13   3.44588  0.12869  3.49480  2.83829     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     14   3.09981  2.60227  3.14754  0.17688     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     15   3.09981  2.60227  3.14754  0.17688     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     16   2.90007  2.52341  2.72811  0.22383     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     17   2.95525  3.59899  0.11594  3.50483     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     18   3.09981  2.60227  3.14754  0.17688     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     19   0.14044  3.39135  2.80912  3.29407     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     20   0.14044  3.39135  2.80912  3.29407     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     21   2.95525  3.59899  0.11594  3.50483     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     22   0.14044  3.39135  2.80912  3.29407     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     23   3.09981  2.60227  3.14754  0.17688     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     24   3.09981  2.60227  3.14754  0.17688     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     25   0.14044  3.39135  2.80912  3.29407     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     26   3.44588  0.12869  3.49480  2.83829     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     27   3.44588  0.12869  3.49480  2.83829     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     28   3.44588  0.12869  3.49480  2.83829     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     29   2.95525  3.59899  0.11594  3.50483     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     30   3.44588  0.12869  3.49480  2.83829     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     31   3.09981  2.60227  3.14754  0.17688     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     32   2.95525  3.59899  0.11594  3.50483     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     33   0.14044  3.39135  2.80912  3.29407     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     34   0.14044  3.39135  2.80912  3.29407     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     35   3.44588  0.12869  3.49480  2.83829     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     36   3.09981  2.60227  3.14754  0.17688     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     37   3.09981  2.60227  3.14754  0.17688     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     38   0.14044  3.39135  2.80912  3.29407     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     39   0.14044  3.39135  2.80912  3.29407     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     40   2.95525  3.59899  0.11594  3.50483     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     41   3.44588  0.12869  3.49480  2.83829     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     42   0.14044  3.39135  2.80912  3.29407     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     43   3.09981  2.60227  3.14754  0.17688     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     44   0.14044  3.39135  2.80912  3.29407     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
+     45   3.09981  2.60227  3.14754  0.17688     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01849  3.99958        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Amoebozoa_4_LSU_start_threeb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 23:27:39 2012
+NSEQ  37
+EFFN  3.355835
+CKSUM 748456799
+STATS LOCAL MSV       -8.0028  0.71934
+STATS LOCAL VITERBI   -7.6102  0.71934
+STATS LOCAL FORWARD   -4.0065  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21748  1.37885  1.69924  1.31180
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  0.00000        *
+      1   0.14051  3.39082  2.80878  3.29348      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+      2   3.09928  2.60192  3.14702  0.17697      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+      3   2.95488  3.59846  0.11600  3.50424      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+      4   3.09928  2.60192  3.14702  0.17697      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+      5   3.09928  2.60192  3.14702  0.17697      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+      6   2.95488  3.59846  0.11600  3.50424      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+      7   3.44527  0.12877  3.49421  2.83784      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+      8   3.44527  0.12877  3.49421  2.83784      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+      9   3.09928  2.60192  3.14702  0.17697      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     10   3.44527  0.12877  3.49421  2.83784     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     11   0.14051  3.39082  2.80878  3.29348     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     12   3.09928  2.60192  3.14702  0.17697     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     13   3.44527  0.12877  3.49421  2.83784     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     14   2.83510  2.01766  2.89263  0.28384     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     15   0.14051  3.39082  2.80878  3.29348     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     16   0.14051  3.39082  2.80878  3.29348     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     17   2.95488  3.59846  0.11600  3.50424     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     18   3.09928  2.60192  3.14702  0.17697     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     19   0.14051  3.39082  2.80878  3.29348     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     20   0.14051  3.39082  2.80878  3.29348     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     21   2.95488  3.59846  0.11600  3.50424     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     22   0.14051  3.39082  2.80878  3.29348     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     23   3.44527  0.12877  3.49421  2.83784     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     24   3.09928  2.60192  3.14702  0.17697     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     25   0.14051  3.39082  2.80878  3.29348     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     26   3.44527  0.12877  3.49421  2.83784     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     27   3.44527  0.12877  3.49421  2.83784     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     28   3.44527  0.12877  3.49421  2.83784     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     29   2.95488  3.59846  0.11600  3.50424     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     30   3.44527  0.12877  3.49421  2.83784     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     31   3.09928  2.60192  3.14702  0.17697     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     32   2.95488  3.59846  0.11600  3.50424     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     33   0.14051  3.39082  2.80878  3.29348     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     34   0.14051  3.39082  2.80878  3.29348     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     35   3.44527  0.12877  3.49421  2.83784     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     36   3.09928  2.60192  3.14702  0.17697     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     37   3.09928  2.60192  3.14702  0.17697     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     38   0.14051  3.39082  2.80878  3.29348     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     39   0.14051  3.39082  2.80878  3.29348     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     40   2.95488  3.59846  0.11600  3.50424     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     41   3.44527  0.12877  3.49421  2.83784     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     42   0.14051  3.39082  2.80878  3.29348     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     43   3.09928  2.60192  3.14702  0.17697     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     44   0.14051  3.39082  2.80878  3.29348     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
+     45   3.09928  2.60192  3.14702  0.17697     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01850  3.99927        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Amoebozoa_4_LSU_start_threec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 23:27:48 2012
+NSEQ  24
+EFFN  3.301758
+CKSUM 2052849582
+STATS LOCAL MSV       -8.0328  0.71932
+STATS LOCAL VITERBI   -7.7296  0.71932
+STATS LOCAL FORWARD   -4.1535  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34051  1.31747  1.61312  1.30486
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  0.00000        *
+      1   0.14279  3.37354  2.79756  3.27457      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      2   3.08183  2.59083  3.13024  0.17977      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      3   2.94283  3.58093  0.11791  3.48489      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      4   3.08183  2.59083  3.13024  0.17977      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      5   3.08183  2.59083  3.13024  0.17977      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      6   2.94283  3.58093  0.11791  3.48489      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      7   3.42536  0.13114  3.47515  2.82335      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      8   3.42536  0.13114  3.47515  2.82335      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      9   3.08183  2.59083  3.13024  0.17977      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     10   3.42536  0.13114  3.47515  2.82335     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     11   0.14279  3.37354  2.79756  3.27457     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     12   3.42536  0.13114  3.47515  2.82335     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     13   3.42536  0.13114  3.47515  2.82335     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     14   3.08183  2.59083  3.13024  0.17977     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     15   3.08183  2.59083  3.13024  0.17977     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     16   2.94283  3.58093  0.11791  3.48489     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     17   2.94283  3.58093  0.11791  3.48489     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     18   3.08183  2.59083  3.13024  0.17977     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     19   0.14279  3.37354  2.79756  3.27457     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     20   0.14279  3.37354  2.79756  3.27457     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     21   2.94283  3.58093  0.11791  3.48489     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     22   0.14279  3.37354  2.79756  3.27457     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     23   3.42536  0.13114  3.47515  2.82335     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     24   3.08183  2.59083  3.13024  0.17977     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     25   0.14279  3.37354  2.79756  3.27457     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     26   3.42536  0.13114  3.47515  2.82335     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     27   3.42536  0.13114  3.47515  2.82335     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     28   3.42536  0.13114  3.47515  2.82335     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     29   2.94283  3.58093  0.11791  3.48489     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     30   3.42536  0.13114  3.47515  2.82335     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     31   3.08183  2.59083  3.13024  0.17977     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     32   2.94283  3.58093  0.11791  3.48489     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     33   0.14279  3.37354  2.79756  3.27457     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     34   0.14279  3.37354  2.79756  3.27457     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     35   3.42536  0.13114  3.47515  2.82335     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     36   3.08183  2.59083  3.13024  0.17977     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     37   3.08183  2.59083  3.13024  0.17977     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     38   0.14279  3.37354  2.79756  3.27457     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     39   0.14279  3.37354  2.79756  3.27457     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     40   2.94283  3.58093  0.11791  3.48489     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     41   3.42536  0.13114  3.47515  2.82335     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     42   0.14279  3.37354  2.79756  3.27457     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     43   3.08183  2.59083  3.13024  0.17977     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     44   0.14279  3.37354  2.79756  3.27457     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     45   3.08183  2.59083  3.13024  0.17977     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01869  3.98931        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Amoebozoa_4_LSU_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 23:27:18 2012
+NSEQ  90
+EFFN  3.589783
+CKSUM 608676318
+STATS LOCAL MSV       -7.8555  0.71932
+STATS LOCAL VITERBI   -7.7531  0.71932
+STATS LOCAL FORWARD   -4.2533  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23957  1.30603  1.77951  1.30608
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  0.00000        *
+      1   0.67175  2.28147  2.23032  1.27454      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+      2   3.17198  2.64807  3.21692  0.16580      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+      3   2.21370  2.19922  1.35245  0.65160      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+      4   3.17198  2.64807  3.21692  0.16580      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+      5   3.52713  0.11953  3.57250  2.89695      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+      6   3.00378  3.67011  0.10853  3.58348      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+      7   3.52713  0.11953  3.57250  2.89695      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+      8   3.52713  0.11953  3.57250  2.89695      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+      9   3.17198  2.64807  3.21692  0.16580      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     10   3.52713  0.11953  3.57250  2.89695     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     11   0.13155  3.46209  2.85482  3.37161     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     12   3.17198  2.64807  3.21692  0.16580     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     13   3.52713  0.11953  3.57250  2.89695     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     14   3.52713  0.11953  3.57250  2.89695     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     15   0.13155  3.46209  2.85482  3.37161     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     16   0.13155  3.46209  2.85482  3.37161     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     17   3.00378  3.67011  0.10853  3.58348     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     18   3.17198  2.64807  3.21692  0.16580     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     19   0.13155  3.46209  2.85482  3.37161     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     20   0.13155  3.46209  2.85482  3.37161     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     21   3.00378  3.67011  0.10853  3.58348     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     22   0.13155  3.46209  2.85482  3.37161     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     23   3.17198  2.64807  3.21692  0.16580     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     24   3.17198  2.64807  3.21692  0.16580     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     25   0.13155  3.46209  2.85482  3.37161     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     26   3.52713  0.11953  3.57250  2.89695     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     27   3.52713  0.11953  3.57250  2.89695     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     28   3.52713  0.11953  3.57250  2.89695     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     29   3.00378  3.67011  0.10853  3.58348     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     30   3.52713  0.11953  3.57250  2.89695     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     31   3.17198  2.64807  3.21692  0.16580     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     32   3.00378  3.67011  0.10853  3.58348     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     33   0.13155  3.46209  2.85482  3.37161     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     34   0.13155  3.46209  2.85482  3.37161     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     35   3.52713  0.11953  3.57250  2.89695     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     36   3.17198  2.64807  3.21692  0.16580     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     37   3.17198  2.64807  3.21692  0.16580     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     38   0.13155  3.46209  2.85482  3.37161     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     39   0.13155  3.46209  2.85482  3.37161     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     40   3.00378  3.67011  0.10853  3.58348     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     41   3.52713  0.11953  3.57250  2.89695     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     42   0.13155  3.46209  2.85482  3.37161     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     43   3.17198  2.64807  3.21692  0.16580     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     44   0.13155  3.46209  2.85482  3.37161     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
+     45   3.17198  2.64807  3.21692  0.16580     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01773  4.04126        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Amoebozoa_1_SSU_end_onea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 22:26:03 2012
+NSEQ  50
+EFFN  3.311157
+CKSUM 580143303
+STATS LOCAL MSV       -8.0808  0.71933
+STATS LOCAL VITERBI   -7.6783  0.71933
+STATS LOCAL FORWARD   -4.0882  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26882  1.71702  1.24405  1.38222
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  0.00000        *
+      1   0.14238  3.37657  2.79952  3.27788      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+      2   2.94495  3.58400  0.11757  3.48828      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+      3   3.01055  2.41279  3.06138  0.20537      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+      4   3.42885  0.13072  3.47849  2.82590      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+      5   2.94495  3.58400  0.11757  3.48828      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+      6   3.01055  2.41279  3.06138  0.20537      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+      7   0.14238  3.37657  2.79952  3.27788      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+      8   0.14238  3.37657  2.79952  3.27788      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+      9   3.42885  0.13072  3.47849  2.82590      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     10   0.14238  3.37657  2.79952  3.27788     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     11   0.14238  3.37657  2.79952  3.27788     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     12   2.94495  3.58400  0.11757  3.48828     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     13   2.94495  3.58400  0.11757  3.48828     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     14   3.08488  2.59277  3.13318  0.17928     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     15   0.14238  3.37657  2.79952  3.27788     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     16   3.08488  2.59277  3.13318  0.17928     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     17   3.08488  2.59277  3.13318  0.17928     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     18   3.24463  0.17310  3.29975  2.48809     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     19   2.94495  3.58400  0.11757  3.48828     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     20   3.08488  2.59277  3.13318  0.17928     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     21   0.14238  3.37657  2.79952  3.27788     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     22   2.94495  3.58400  0.11757  3.48828     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     23   2.94495  3.58400  0.11757  3.48828     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     24   3.08488  2.59277  3.13318  0.17928     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     25   2.94495  3.58400  0.11757  3.48828     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     26   0.14238  3.37657  2.79952  3.27788     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     27   0.14238  3.37657  2.79952  3.27788     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     28   3.42885  0.13072  3.47849  2.82590     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     29   3.42885  0.13072  3.47849  2.82590     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     30   3.01055  2.41279  3.06138  0.20537     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     31   2.94495  3.58400  0.11757  3.48828     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     32   3.31480  0.15590  3.36776  2.60981     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     33   2.94495  3.58400  0.11757  3.48828     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     34   2.94495  3.58400  0.11757  3.48828     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     35   0.14238  3.37657  2.79952  3.27788     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     36   3.08488  2.59277  3.13318  0.17928     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     37   2.94495  3.58400  0.11757  3.48828     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     38   2.94495  3.58400  0.11757  3.48828     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     39   0.14238  3.37657  2.79952  3.27788     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     40   3.08488  2.59277  3.13318  0.17928     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     41   3.42885  0.13072  3.47849  2.82590     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     42   0.14238  3.37657  2.79952  3.27788     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     43   3.08488  2.59277  3.13318  0.17928     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     44   3.08488  2.59277  3.13318  0.17928     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
+     45   0.14238  3.37657  2.79952  3.27788     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01865  3.99105        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Amoebozoa_1_SSU_end_oneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 22:26:13 2012
+NSEQ  12
+EFFN  3.477539
+CKSUM 3078232557
+STATS LOCAL MSV       -7.3971  0.71932
+STATS LOCAL VITERBI   -7.6461  0.71932
+STATS LOCAL FORWARD   -4.1544  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.31721  1.62507  1.26310  1.37656
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  0.00000        *
+      1   0.13568  3.42858  2.83322  3.33486      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+      2   2.98094  3.63655  0.11196  3.54635      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+      3   3.13765  2.62630  3.18392  0.17097      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+      4   3.48870  0.12377  3.53577  2.86929      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+      5   2.98094  3.63655  0.11196  3.54635      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+      6   3.13765  2.62630  3.18392  0.17097      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+      7   0.13568  3.42858  2.83322  3.33486      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+      8   0.13568  3.42858  2.83322  3.33486      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+      9   3.48870  0.12377  3.53577  2.86929      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     10   0.13568  3.42858  2.83322  3.33486     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     11   0.13568  3.42858  2.83322  3.33486     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     12   2.98094  3.63655  0.11196  3.54635     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     13   2.98094  3.63655  0.11196  3.54635     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     14   3.13765  2.62630  3.18392  0.17097     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     15   0.13568  3.42858  2.83322  3.33486     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     16   3.13765  2.62630  3.18392  0.17097     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     17   3.48870  0.12377  3.53577  2.86929     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     18   2.78716  0.27620  2.35451  2.46742     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     19   2.98094  3.63655  0.11196  3.54635     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     20   3.13765  2.62630  3.18392  0.17097     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     21   0.13568  3.42858  2.83322  3.33486     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.32896  4.03910  1.33668  1.46634  0.26236  1.09861  0.40547
+     22   2.56939  3.07022  0.19408  2.92959     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04779  3.75793  3.75793  1.46634  0.26236  0.12583  2.13510
+     23   2.98094  3.63655  0.11196  3.54635     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     24   3.13765  2.62630  3.18392  0.17097     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     25   2.98094  3.63655  0.11196  3.54635     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     26   0.13568  3.42858  2.83322  3.33486     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     27   0.13568  3.42858  2.83322  3.33486     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     28   3.48870  0.12377  3.53577  2.86929     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     29   3.48870  0.12377  3.53577  2.86929     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     30   3.13765  2.62630  3.18392  0.17097     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     31   2.98094  3.63655  0.11196  3.54635     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     32   3.48870  0.12377  3.53577  2.86929     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     33   2.62697  2.44597  0.24485  2.84327     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     34   2.98094  3.63655  0.11196  3.54635     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     35   0.13568  3.42858  2.83322  3.33486     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     36   3.13765  2.62630  3.18392  0.17097     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     37   2.98094  3.63655  0.11196  3.54635     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     38   2.98094  3.63655  0.11196  3.54635     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     39   0.13568  3.42858  2.83322  3.33486     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     40   3.13765  2.62630  3.18392  0.17097     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     41   3.48870  0.12377  3.53577  2.86929     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     42   0.13568  3.42858  2.83322  3.33486     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     43   3.13765  2.62630  3.18392  0.17097     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     44   3.13765  2.62630  3.18392  0.17097     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     45   2.10018  2.39300  2.66436  0.33328     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01809  4.02133        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Amoebozoa_1_SSU_end_onec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 22:26:19 2012
+NSEQ  13
+EFFN  3.240479
+CKSUM 1661502292
+STATS LOCAL MSV       -8.0638  0.71932
+STATS LOCAL VITERBI   -7.7447  0.71932
+STATS LOCAL FORWARD   -4.3884  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34170  1.54513  1.18912  1.51038
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  0.00000        *
+      1   0.14547  3.35358  2.78456  3.25273      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+      2   2.92882  3.56061  0.12017  3.46248      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+      3   3.06176  2.57805  3.11093  0.18307      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+      4   3.40234  0.13394  3.45309  2.80654      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+      5   2.92882  3.56061  0.12017  3.46248      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+      6   3.06176  2.57805  3.11093  0.18307      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+      7   0.14547  3.35358  2.78456  3.25273      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+      8   0.14547  3.35358  2.78456  3.25273      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+      9   3.40234  0.13394  3.45309  2.80654      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     10   0.14547  3.35358  2.78456  3.25273     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     11   0.14547  3.35358  2.78456  3.25273     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     12   2.92882  3.56061  0.12017  3.46248     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     13   2.92882  3.56061  0.12017  3.46248     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     14   3.06176  2.57805  3.11093  0.18307     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     15   3.40234  0.13394  3.45309  2.80654     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     16   3.06176  2.57805  3.11093  0.18307     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     17   3.40234  0.13394  3.45309  2.80654     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     18   3.40234  0.13394  3.45309  2.80654     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     19   2.92882  3.56061  0.12017  3.46248     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     20   3.06176  2.57805  3.11093  0.18307     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     21   0.14547  3.35358  2.78456  3.25273     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     22   2.92882  3.56061  0.12017  3.46248     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     23   2.92882  3.56061  0.12017  3.46248     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     24   3.06176  2.57805  3.11093  0.18307     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     25   2.92882  3.56061  0.12017  3.46248     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     26   0.14547  3.35358  2.78456  3.25273     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     27   0.14547  3.35358  2.78456  3.25273     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     28   3.40234  0.13394  3.45309  2.80654     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     29   3.40234  0.13394  3.45309  2.80654     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     30   3.06176  2.57805  3.11093  0.18307     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     31   2.92882  3.56061  0.12017  3.46248     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     32   3.40234  0.13394  3.45309  2.80654     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     33   2.92882  3.56061  0.12017  3.46248     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     34   2.92882  3.56061  0.12017  3.46248     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     35   0.14547  3.35358  2.78456  3.25273     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     36   2.92882  3.56061  0.12017  3.46248     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     37   2.92882  3.56061  0.12017  3.46248     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     38   2.92882  3.56061  0.12017  3.46248     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     39   0.14547  3.35358  2.78456  3.25273     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     40   3.06176  2.57805  3.11093  0.18307     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     41   3.40234  0.13394  3.45309  2.80654     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     42   0.14547  3.35358  2.78456  3.25273     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     43   3.06176  2.57805  3.11093  0.18307     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     44   3.06176  2.57805  3.11093  0.18307     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
+     45   0.26665  2.85378  2.54466  2.32346     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01890  3.97790        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Amoebozoa_1_SSU_end_oned_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 22:26:33 2012
+NSEQ  14
+EFFN  3.305176
+CKSUM 2249141990
+STATS LOCAL MSV       -8.0858  0.71933
+STATS LOCAL VITERBI   -7.7838  0.71933
+STATS LOCAL FORWARD   -4.1454  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27019  1.70539  1.30694  1.32098
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00827  4.00827  1.46634  0.26236  0.00000        *
+      1   0.14264  3.37464  2.79827  3.27577      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
+      2   2.94360  3.58205  0.11779  3.48613      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
+      3   3.08294  2.59153  3.13131  0.17959      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
+      4   3.42663  0.13098  3.47636  2.82428      4 - -
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
+     44   3.08294  2.59153  3.13131  0.17959     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
+     45   0.14264  3.37464  2.79827  3.27577     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01867  3.98994        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Amoebozoa_1_SSU_end_threea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 22:27:31 2012
+NSEQ  16
+EFFN  3.175781
+CKSUM 572948826
+STATS LOCAL MSV       -8.0370  0.71932
+STATS LOCAL VITERBI   -7.7288  0.71932
+STATS LOCAL FORWARD   -4.0261  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.15962  1.55332  1.24723  1.67370
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  0.00000        *
+      1   0.14843  3.33206  2.77050  3.22920      1 - -
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+          0.07696  3.98449  2.89186  1.46634  0.26236  1.09861  0.40547
+      2   2.86397  3.46759  0.13121  3.36018      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03939  3.94692  3.94692  1.46634  0.26236  0.51322  0.91271
+      3   3.04021  2.56430  3.09020  0.18668      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      4   3.37748  0.13704  3.42926  2.78832      4 - -
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+      5   2.91360  3.53861  0.12268  3.43825      5 - -
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+     45   3.37748  0.13704  3.42926  2.78832     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01914  3.96571        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Amoebozoa_1_SSU_end_threeb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 22:27:37 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 479671279
+STATS LOCAL MSV       -7.9995  0.72030
+STATS LOCAL VITERBI   -7.7571  0.72030
+STATS LOCAL FORWARD   -4.0868  0.72030
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33393  1.61825  1.24860  1.38068
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   0.15719  3.27118  2.73043  3.16274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.86982  3.47591  0.13017  3.36931     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Amoebozoa_1_SSU_end_threec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 22:27:43 2012
+NSEQ  5
+EFFN  3.247070
+CKSUM 3545515269
+STATS LOCAL MSV       -8.0553  0.71931
+STATS LOCAL VITERBI   -7.6960  0.71931
+STATS LOCAL FORWARD   -4.1589  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33344  1.62254  1.24775  1.37878
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  0.00000        *
+      1   0.14518  3.35575  2.78597  3.25510      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      2   2.93035  3.56282  0.11992  3.46492      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      3   3.06393  2.57943  3.11303  0.18271      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      4   3.40484  0.13363  3.45549  2.80837      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      5   2.93035  3.56282  0.11992  3.46492      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      6   3.06393  2.57943  3.11303  0.18271      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      7   0.14518  3.35575  2.78597  3.25510      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      8   0.14518  3.35575  2.78597  3.25510      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      9   3.40484  0.13363  3.45549  2.80837      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     10   0.14518  3.35575  2.78597  3.25510     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     11   0.14518  3.35575  2.78597  3.25510     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     12   2.93035  3.56282  0.11992  3.46492     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     13   2.93035  3.56282  0.11992  3.46492     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     14   3.06393  2.57943  3.11303  0.18271     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     15   0.14518  3.35575  2.78597  3.25510     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     16   3.06393  2.57943  3.11303  0.18271     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     17   3.40484  0.13363  3.45549  2.80837     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     18   3.40484  0.13363  3.45549  2.80837     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     19   2.93035  3.56282  0.11992  3.46492     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     20   3.06393  2.57943  3.11303  0.18271     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     21   0.14518  3.35575  2.78597  3.25510     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     22   2.93035  3.56282  0.11992  3.46492     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     23   2.93035  3.56282  0.11992  3.46492     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     24   3.06393  2.57943  3.11303  0.18271     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     25   2.93035  3.56282  0.11992  3.46492     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     26   0.14518  3.35575  2.78597  3.25510     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     27   0.14518  3.35575  2.78597  3.25510     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     28   3.40484  0.13363  3.45549  2.80837     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     29   3.40484  0.13363  3.45549  2.80837     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     30   3.06393  2.57943  3.11303  0.18271     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     31   2.93035  3.56282  0.11992  3.46492     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     32   3.40484  0.13363  3.45549  2.80837     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     33   2.93035  3.56282  0.11992  3.46492     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     34   2.93035  3.56282  0.11992  3.46492     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     35   0.14518  3.35575  2.78597  3.25510     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     36   3.06393  2.57943  3.11303  0.18271     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     37   2.93035  3.56282  0.11992  3.46492     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     38   2.93035  3.56282  0.11992  3.46492     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     39   0.14518  3.35575  2.78597  3.25510     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     40   3.06393  2.57943  3.11303  0.18271     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     41   3.40484  0.13363  3.45549  2.80837     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     42   0.14518  3.35575  2.78597  3.25510     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     43   3.06393  2.57943  3.11303  0.18271     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     44   3.06393  2.57943  3.11303  0.18271     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     45   3.06393  2.57943  3.11303  0.18271     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97913        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Amoebozoa_1_SSU_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 22:27:08 2012
+NSEQ  71
+EFFN  3.375793
+CKSUM 1469632365
+STATS LOCAL MSV       -7.4121  0.71932
+STATS LOCAL VITERBI   -7.6514  0.71932
+STATS LOCAL FORWARD   -4.1516  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.32611  1.62738  1.24904  1.38123
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  0.00000        *
+      1   0.13969  3.39712  2.81286  3.30038      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+      2   2.95925  3.60483  0.11531  3.51128      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+      3   3.10566  2.60598  3.15316  0.17595      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+      4   3.45252  0.12792  3.50115  2.84311      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+      5   2.95925  3.60483  0.11531  3.51128      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+      6   3.10566  2.60598  3.15316  0.17595      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+      7   0.13969  3.39712  2.81286  3.30038      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+      8   0.13969  3.39712  2.81286  3.30038      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+      9   3.45252  0.12792  3.50115  2.84311      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     10   0.13969  3.39712  2.81286  3.30038     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     11   0.13969  3.39712  2.81286  3.30038     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     12   2.95925  3.60483  0.11531  3.51128     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     13   2.95925  3.60483  0.11531  3.51128     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     14   3.10566  2.60598  3.15316  0.17595     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     15   0.13969  3.39712  2.81286  3.30038     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     16   3.10566  2.60598  3.15316  0.17595     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     17   3.45252  0.12792  3.50115  2.84311     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     18   2.95186  0.22451  2.63110  2.56592     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     19   2.95925  3.60483  0.11531  3.51128     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     20   3.10566  2.60598  3.15316  0.17595     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     21   0.13969  3.39712  2.81286  3.30038     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.05378  4.02102  3.36902  1.46634  0.26236  1.09861  0.40547
+     22   2.93878  3.57505  0.11856  3.47840     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00439  4.00439  1.46634  0.26236  0.71393  0.67279
+     23   2.95925  3.60483  0.11531  3.51128     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     24   3.10566  2.60598  3.15316  0.17595     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     25   2.95925  3.60483  0.11531  3.51128     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     26   0.13969  3.39712  2.81286  3.30038     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     27   0.13969  3.39712  2.81286  3.30038     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     28   3.45252  0.12792  3.50115  2.84311     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     29   3.45252  0.12792  3.50115  2.84311     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     30   3.10566  2.60598  3.15316  0.17595     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     31   2.95925  3.60483  0.11531  3.51128     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     32   3.45252  0.12792  3.50115  2.84311     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     33   2.71968  2.72902  0.19871  3.01523     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     34   2.95925  3.60483  0.11531  3.51128     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     35   0.13969  3.39712  2.81286  3.30038     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     36   3.10566  2.60598  3.15316  0.17595     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     37   2.95925  3.60483  0.11531  3.51128     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     38   2.95925  3.60483  0.11531  3.51128     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     39   0.13969  3.39712  2.81286  3.30038     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     40   3.10566  2.60598  3.15316  0.17595     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     41   3.45252  0.12792  3.50115  2.84311     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     42   0.13969  3.39712  2.81286  3.30038     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     43   3.10566  2.60598  3.15316  0.17595     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     44   3.10566  2.60598  3.15316  0.17595     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
+     45   2.33315  2.44141  2.77551  0.28282     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01843  4.00292        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/D.hmm.h3f
Binary file ITSx_db/HMMs/D.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/D.hmm.h3i
Binary file ITSx_db/HMMs/D.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/D.hmm.h3m
Binary file ITSx_db/HMMs/D.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/D.hmm.h3p
Binary file ITSx_db/HMMs/D.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/E.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/E.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,2170 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Euglenozoa_58S_end_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 21:20:25 2012
+NSEQ  5
+EFFN  3.305664
+CKSUM 1011588078
+STATS LOCAL MSV       -8.1772  0.71930
+STATS LOCAL VITERBI   -7.8656  0.71930
+STATS LOCAL FORWARD   -3.6513  0.71930
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.83104  0.97779  1.32465  1.62094
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  0.00000        *
+      1   3.42681  0.13096  3.47654  2.82441      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      2   3.42681  0.13096  3.47654  2.82441      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      3   3.42681  0.13096  3.47654  2.82441      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      4   3.42681  0.13096  3.47654  2.82441      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      5   2.43822  1.17704  2.50879  0.64793      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      6   3.42681  0.13096  3.47654  2.82441      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      7   2.94371  3.58221  0.11777  3.48630      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      8   2.94371  3.58221  0.11777  3.48630      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      9   2.94371  3.58221  0.11777  3.48630      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     10   2.94371  3.58221  0.11777  3.48630     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     11   2.66304  1.70497  2.72642  0.38121     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     12   3.42681  0.13096  3.47654  2.82441     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     13   0.14262  3.37480  2.79837  3.27595     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     14   3.08310  2.59163  3.13146  0.17957     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     15   3.42681  0.13096  3.47654  2.82441     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     16   3.42681  0.13096  3.47654  2.82441     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     17   3.42681  0.13096  3.47654  2.82441     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     18   3.42681  0.13096  3.47654  2.82441     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     19   2.94371  3.58221  0.11777  3.48630     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     20   3.08310  2.59163  3.13146  0.17957     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     21   2.94371  3.58221  0.11777  3.48630     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     22   3.42681  0.13096  3.47654  2.82441     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     23   0.14262  3.37480  2.79837  3.27595     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     24   3.08310  2.59163  3.13146  0.17957     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     25   2.94371  3.58221  0.11777  3.48630     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     26   3.42681  0.13096  3.47654  2.82441     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     27   3.42681  0.13096  3.47654  2.82441     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     28   2.94371  3.58221  0.11777  3.48630     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     29   3.42681  0.13096  3.47654  2.82441     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     30   0.14262  3.37480  2.79837  3.27595     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     31   2.94371  3.58221  0.11777  3.48630     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     32   3.08310  2.59163  3.13146  0.17957     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     33   3.42681  0.13096  3.47654  2.82441     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     34   3.08310  2.59163  3.13146  0.17957     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     35   3.42681  0.13096  3.47654  2.82441     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     36   0.14262  3.37480  2.79837  3.27595     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     37   2.94371  3.58221  0.11777  3.48630     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     38   3.08310  2.59163  3.13146  0.17957     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     39   2.94371  3.58221  0.11777  3.48630     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     40   3.08310  2.59163  3.13146  0.17957     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     41   3.42681  0.13096  3.47654  2.82441     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     42   2.94371  3.58221  0.11777  3.48630     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     43   0.14262  3.37480  2.79837  3.27595     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     44   0.14262  3.37480  2.79837  3.27595     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     45   3.42681  0.13096  3.47654  2.82441     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01867  3.99003        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Euglenozoa_58S_end_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 21:20:17 2012
+NSEQ  9
+EFFN  3.388184
+CKSUM 4129927598
+STATS LOCAL MSV       -7.5680  0.71933
+STATS LOCAL VITERBI   -7.9086  0.71933
+STATS LOCAL FORWARD   -4.1297  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73272  1.05373  1.47466  1.40362
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  0.00000        *
+      1   3.45700  0.12739  3.50544  2.84636      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+      2   3.45700  0.12739  3.50544  2.84636      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+      3   3.10960  2.60848  3.15695  0.17533      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+      4   3.10960  2.60848  3.15695  0.17533      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+      5   2.51380  0.59068  2.58551  1.23879      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+      6   3.10960  2.60848  3.15695  0.17533      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+      7   2.58534  2.38556  0.26060  2.78052      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+      8   2.96194  3.60876  0.11489  3.51562      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+      9   2.96194  3.60876  0.11489  3.51562      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     10   2.96194  3.60876  0.11489  3.51562     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     11   3.10960  2.60848  3.15695  0.17533     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     12   3.45700  0.12739  3.50544  2.84636     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     13   0.13919  3.40101  2.81538  3.30464     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     14   3.10960  2.60848  3.15695  0.17533     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     15   3.45700  0.12739  3.50544  2.84636     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     16   3.45700  0.12739  3.50544  2.84636     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     17   3.45700  0.12739  3.50544  2.84636     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     18   3.45700  0.12739  3.50544  2.84636     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     19   2.96194  3.60876  0.11489  3.51562     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     20   3.10960  2.60848  3.15695  0.17533     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     21   2.96194  3.60876  0.11489  3.51562     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     22   3.45700  0.12739  3.50544  2.84636     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     23   0.13919  3.40101  2.81538  3.30464     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     24   3.10960  2.60848  3.15695  0.17533     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     25   2.96194  3.60876  0.11489  3.51562     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     26   3.45700  0.12739  3.50544  2.84636     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     27   3.45700  0.12739  3.50544  2.84636     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     28   0.13919  3.40101  2.81538  3.30464     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     29   3.45700  0.12739  3.50544  2.84636     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     30   0.13919  3.40101  2.81538  3.30464     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     31   3.10960  2.60848  3.15695  0.17533     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     32   3.45700  0.12739  3.50544  2.84636     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     33   3.45700  0.12739  3.50544  2.84636     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     34   3.10960  2.60848  3.15695  0.17533     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     35   3.45700  0.12739  3.50544  2.84636     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     36   0.13919  3.40101  2.81538  3.30464     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     37   2.96194  3.60876  0.11489  3.51562     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     38   3.10960  2.60848  3.15695  0.17533     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     39   2.96194  3.60876  0.11489  3.51562     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     40   3.10960  2.60848  3.15695  0.17533     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     41   3.45700  0.12739  3.50544  2.84636     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     42   2.96194  3.60876  0.11489  3.51562     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     43   0.13919  3.40101  2.81538  3.30464     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     44   0.13919  3.40101  2.81538  3.30464     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     45   3.45700  0.12739  3.50544  2.84636     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01839  4.00518        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Euglenozoa_58S_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 21:19:53 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4096091460
+STATS LOCAL MSV       -7.5109  0.72875
+STATS LOCAL VITERBI   -8.2829  0.72875
+STATS LOCAL FORWARD   -3.4193  0.72875
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.64469  1.08655  1.50951  1.39220
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   1.03732  1.95876  1.96551  1.00928      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.81865  0.23582  2.88868  2.35662     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   0.23862  2.84929  2.43386  2.70756     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   0.23862  2.84929  2.43386  2.70756     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.57915  2.25909  2.64442  0.28946     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Euglenozoa_58S_end_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 21:20:40 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2052136868
+STATS LOCAL MSV       -7.3922  0.72832
+STATS LOCAL VITERBI   -8.2890  0.72832
+STATS LOCAL FORWARD   -3.4229  0.72832
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.59740  1.17878  1.51108  1.31211
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.81865  0.23582  2.88868  2.35662     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   0.23862  2.84929  2.43386  2.70756     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.57915  2.25909  2.64442  0.28946     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Euglenozoa_58S_end_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 21:20:34 2012
+NSEQ  7
+EFFN  3.325684
+CKSUM 336432944
+STATS LOCAL MSV       -8.1816  0.71932
+STATS LOCAL VITERBI   -7.9070  0.71932
+STATS LOCAL FORWARD   -4.0754  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.64558  1.08090  1.62591  1.30535
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  0.00000        *
+      1   3.08958  2.59576  3.13770  0.17852      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      2   3.43422  0.13008  3.48363  2.82980      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      3   3.08958  2.59576  3.13770  0.17852      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      4   3.43422  0.13008  3.48363  2.82980      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      5   3.08958  2.59576  3.13770  0.17852      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      6   3.43422  0.13008  3.48363  2.82980      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      7   2.94820  3.58873  0.11705  3.49350      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      8   0.14177  3.38122  2.80255  3.28298      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      9   2.94820  3.58873  0.11705  3.49350      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     10   3.43422  0.13008  3.48363  2.82980     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     11   3.43422  0.13008  3.48363  2.82980     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     12   0.14177  3.38122  2.80255  3.28298     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     13   3.08958  2.59576  3.13770  0.17852     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     14   3.43422  0.13008  3.48363  2.82980     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     15   3.43422  0.13008  3.48363  2.82980     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     16   3.43422  0.13008  3.48363  2.82980     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     17   3.43422  0.13008  3.48363  2.82980     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     18   2.94820  3.58873  0.11705  3.49350     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     19   3.08958  2.59576  3.13770  0.17852     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     20   2.94820  3.58873  0.11705  3.49350     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     21   3.43422  0.13008  3.48363  2.82980     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     22   0.14177  3.38122  2.80255  3.28298     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     23   3.08958  2.59576  3.13770  0.17852     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     24   2.94820  3.58873  0.11705  3.49350     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     25   3.43422  0.13008  3.48363  2.82980     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     26   3.43422  0.13008  3.48363  2.82980     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     27   0.14177  3.38122  2.80255  3.28298     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     28   3.43422  0.13008  3.48363  2.82980     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     29   0.14177  3.38122  2.80255  3.28298     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     30   3.08958  2.59576  3.13770  0.17852     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     31   3.08958  2.59576  3.13770  0.17852     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     32   3.08958  2.59576  3.13770  0.17852     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     33   3.43422  0.13008  3.48363  2.82980     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     34   3.08958  2.59576  3.13770  0.17852     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     35   3.43422  0.13008  3.48363  2.82980     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     36   0.14177  3.38122  2.80255  3.28298     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     37   2.94820  3.58873  0.11705  3.49350     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     38   3.08958  2.59576  3.13770  0.17852     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     39   2.94820  3.58873  0.11705  3.49350     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     40   3.08958  2.59576  3.13770  0.17852     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     41   3.43422  0.13008  3.48363  2.82980     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     42   2.94820  3.58873  0.11705  3.49350     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     43   0.14177  3.38122  2.80255  3.28298     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     44   0.14177  3.38122  2.80255  3.28298     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     45   2.76326  1.89083  2.82328  0.31944     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01860  3.99373        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Euglenozoa_58S_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 21:20:07 2012
+NSEQ  10
+EFFN  3.364258
+CKSUM 1761663145
+STATS LOCAL MSV       -8.0329  0.71931
+STATS LOCAL VITERBI   -7.7753  0.71931
+STATS LOCAL FORWARD   -4.1828  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.64380  1.18343  1.62478  1.19213
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  0.00000        *
+      1   3.44834  0.12841  3.49715  2.84007      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      2   3.10197  2.60364  3.14962  0.17654      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      3   3.44834  0.12841  3.49715  2.84007      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      4   2.85311  2.04951  2.90999  0.27567      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      5   0.14016  3.39348  2.81050  3.29640      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      6   3.10197  2.60364  3.14962  0.17654      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      7   3.10197  2.60364  3.14962  0.17654      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      8   2.95673  3.60115  0.11570  3.50722      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      9   3.10197  2.60364  3.14962  0.17654      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     10   2.95673  3.60115  0.11570  3.50722     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     11   3.10197  2.60364  3.14962  0.17654     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     12   3.44834  0.12841  3.49715  2.84007     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     13   0.14016  3.39348  2.81050  3.29640     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     14   3.10197  2.60364  3.14962  0.17654     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     15   3.44834  0.12841  3.49715  2.84007     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     16   3.44834  0.12841  3.49715  2.84007     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     17   3.44834  0.12841  3.49715  2.84007     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     18   3.44834  0.12841  3.49715  2.84007     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     19   2.95673  3.60115  0.11570  3.50722     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     20   3.10197  2.60364  3.14962  0.17654     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     21   2.95673  3.60115  0.11570  3.50722     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     22   3.44834  0.12841  3.49715  2.84007     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     23   0.14016  3.39348  2.81050  3.29640     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     24   3.10197  2.60364  3.14962  0.17654     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     25   2.95673  3.60115  0.11570  3.50722     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     26   3.44834  0.12841  3.49715  2.84007     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     27   3.44834  0.12841  3.49715  2.84007     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     28   0.14016  3.39348  2.81050  3.29640     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     29   3.10197  2.60364  3.14962  0.17654     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     30   0.14016  3.39348  2.81050  3.29640     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     31   3.10197  2.60364  3.14962  0.17654     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     32   3.10197  2.60364  3.14962  0.17654     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     33   3.44834  0.12841  3.49715  2.84007     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     34   3.10197  2.60364  3.14962  0.17654     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     35   3.44834  0.12841  3.49715  2.84007     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     36   0.14016  3.39348  2.81050  3.29640     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     37   2.95673  3.60115  0.11570  3.50722     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     38   3.10197  2.60364  3.14962  0.17654     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     39   2.95673  3.60115  0.11570  3.50722     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     40   3.10197  2.60364  3.14962  0.17654     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     41   3.44834  0.12841  3.49715  2.84007     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     42   2.95673  3.60115  0.11570  3.50722     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     43   0.14016  3.39348  2.81050  3.29640     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     44   0.14016  3.39348  2.81050  3.29640     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     45   3.44834  0.12841  3.49715  2.84007     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01847  4.00081        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Euglenozoa_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 21:20:00 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1286592291
+STATS LOCAL MSV       -8.1373  0.72009
+STATS LOCAL VITERBI   -7.9096  0.72009
+STATS LOCAL FORWARD   -3.7767  0.72009
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93030  1.04903  1.32920  1.42741
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.97980  2.52563  3.03204  0.19727     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   3.30705  0.14631  3.36166  2.73626     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.86982  3.47591  0.13017  3.36931     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   3.30705  0.14631  3.36166  2.73626     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Euglenozoa_58S_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 20:59:41 2012
+NSEQ  60
+EFFN  3.709717
+CKSUM 2951457206
+STATS LOCAL MSV       -7.0592  0.71932
+STATS LOCAL VITERBI   -7.6953  0.71932
+STATS LOCAL FORWARD   -4.4755  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47506  1.53206  1.31293  1.25137
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  0.00000        *
+      1   2.81230  0.36257  2.87896  1.67210      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+      2   0.15880  3.31741  2.80140  2.99844      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+      3   0.12745  3.49654  2.87698  3.40944      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+      4   3.56652  0.11536  3.61013  2.92516      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+      5   3.02701  3.70437  0.10516  3.62145      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+      6   3.07464  2.34317  3.12362  0.20607      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+      7   3.02701  3.70437  0.10516  3.62145      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+      8   3.20757  2.67063  3.25111  0.16063      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+      9   3.56652  0.11536  3.61013  2.92516      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     10   2.93962  3.51998  0.13184  3.19334     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     11   3.56652  0.11536  3.61013  2.92516     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     12   3.02701  3.70437  0.10516  3.62145     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     13   0.12745  3.49654  2.87698  3.40944     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     14   3.20757  2.67063  3.25111  0.16063     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     15   3.02701  3.70437  0.10516  3.62145     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     16   3.02701  3.70437  0.10516  3.62145     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     17   0.12745  3.49654  2.87698  3.40944     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     18   3.20757  2.67063  3.25111  0.16063     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     19   3.02701  3.70437  0.10516  3.62145     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     20   0.14615  3.42302  2.69379  3.33166     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     21   3.56652  0.11536  3.61013  2.92516     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     22   3.20757  2.67063  3.25111  0.16063     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     23   3.20757  2.67063  3.25111  0.16063     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     24   3.02701  3.70437  0.10516  3.62145     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     25   3.02701  3.70437  0.10516  3.62145     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     26   3.56652  0.11536  3.61013  2.92516     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     27   3.20757  2.67063  3.25111  0.16063     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     28   3.20757  2.67063  3.25111  0.16063     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     29   3.56652  0.11536  3.61013  2.92516     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     30   3.56652  0.11536  3.61013  2.92516     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     31   2.93690  2.05163  2.99156  0.26366     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     32   0.21966  3.18213  2.21242  3.07315     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     33   2.65599  2.43617  2.15637  0.31947     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     34   3.20757  2.67063  3.25111  0.16063     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     35   3.20757  2.67063  3.25111  0.16063     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     36   3.56652  0.11536  3.61013  2.92516     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     37   2.90263  3.44668  0.14401  3.04937     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     38   3.05824  2.30650  3.10791  0.21230     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     39   3.20757  2.67063  3.25111  0.16063     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     40   3.02701  3.70437  0.10516  3.62145     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     41   0.12745  3.49654  2.87698  3.40944     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     42   0.12745  3.49654  2.87698  3.40944     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     43   2.56281  2.78185  0.23222  2.68510     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     44   0.12745  3.49654  2.87698  3.40944     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03443  4.07918  4.07918  1.46634  0.26236  1.09861  0.40547
+     45   0.12745  3.49654  2.87698  3.40944     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01736  4.06212        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Euglenozoa_58S_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 21:01:50 2012
+NSEQ  4
+EFFN  3.214844
+CKSUM 3244284289
+STATS LOCAL MSV       -8.0494  0.71931
+STATS LOCAL VITERBI   -7.8071  0.71931
+STATS LOCAL FORWARD   -4.2819  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33872  1.32622  1.38203  1.50836
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  0.00000        *
+      1   3.39256  0.13515  3.44371  2.79938      1 - -
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+     45   3.39256  0.13515  3.44371  2.79938     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01899  3.97309        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Euglenozoa_4_LSU_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 21:57:31 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1715626233
+STATS LOCAL MSV       -8.0936  0.72023
+STATS LOCAL VITERBI   -7.5457  0.72023
+STATS LOCAL FORWARD   -3.8158  0.72023
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28061  1.32941  1.44863  1.50234
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
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+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Euglenozoa_4_LSU_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 21:57:39 2012
+NSEQ  5
+EFFN  3.129883
+CKSUM 3692703187
+STATS LOCAL MSV       -8.1014  0.71932
+STATS LOCAL VITERBI   -7.6315  0.71932
+STATS LOCAL FORWARD   -3.8081  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28086  1.16099  1.38291  1.84405
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  0.00000        *
+      1   3.35951  0.13934  3.41202  2.77509      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      2   0.15061  3.31651  2.76031  3.21221      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      3   3.35951  0.13934  3.41202  2.77509      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      4   0.15061  3.31651  2.76031  3.21221      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      5   2.90252  3.52266  0.12454  3.42069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      6   0.15061  3.31651  2.76031  3.21221      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      7   3.35951  0.13934  3.41202  2.77509      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      8   3.35951  0.13934  3.41202  2.77509      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      9   3.02470  2.55440  3.07528  0.18933      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     10   2.90252  3.52266  0.12454  3.42069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     11   0.15061  3.31651  2.76031  3.21221     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     12   2.90252  3.52266  0.12454  3.42069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     13   3.35951  0.13934  3.41202  2.77509     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     14   2.90252  3.52266  0.12454  3.42069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     15   3.35951  0.13934  3.41202  2.77509     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     16   2.90252  3.52266  0.12454  3.42069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     17   2.90252  3.52266  0.12454  3.42069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     18   3.35951  0.13934  3.41202  2.77509     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     19   0.15061  3.31651  2.76031  3.21221     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     20   2.90252  3.52266  0.12454  3.42069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     21   2.90252  3.52266  0.12454  3.42069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     22   0.15061  3.31651  2.76031  3.21221     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     23   3.35951  0.13934  3.41202  2.77509     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     24   3.02470  2.55440  3.07528  0.18933     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     25   0.15061  3.31651  2.76031  3.21221     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     26   3.35951  0.13934  3.41202  2.77509     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     27   3.35951  0.13934  3.41202  2.77509     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     28   3.35951  0.13934  3.41202  2.77509     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     29   2.90252  3.52266  0.12454  3.42069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     30   3.35951  0.13934  3.41202  2.77509     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     31   3.35951  0.13934  3.41202  2.77509     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     32   2.90252  3.52266  0.12454  3.42069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     33   0.15061  3.31651  2.76031  3.21221     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     34   0.15061  3.31651  2.76031  3.21221     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     35   3.35951  0.13934  3.41202  2.77509     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     36   3.02470  2.55440  3.07528  0.18933     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     37   3.02470  2.55440  3.07528  0.18933     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     38   0.15061  3.31651  2.76031  3.21221     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     39   0.15061  3.31651  2.76031  3.21221     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     40   2.90252  3.52266  0.12454  3.42069     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     41   3.35951  0.13934  3.41202  2.77509     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     42   0.15061  3.31651  2.76031  3.21221     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     43   3.02470  2.55440  3.07528  0.18933     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     44   0.15061  3.31651  2.76031  3.21221     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     45   3.02470  2.55440  3.07528  0.18933     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01931  3.95697        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Euglenozoa_4_LSU_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 21:57:46 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2807236311
+STATS LOCAL MSV       -7.3996  0.72794
+STATS LOCAL VITERBI   -8.2623  0.72794
+STATS LOCAL FORWARD   -3.4447  0.72794
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23771  1.40555  1.43188  1.48784
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   0.23862  2.84929  2.43386  2.70756     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.53331  3.02441  0.20344  2.88069     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Euglenozoa_1_SSU_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 20:54:59 2012
+NSEQ  19
+EFFN  3.400146
+CKSUM 2809811454
+STATS LOCAL MSV       -7.3985  0.71931
+STATS LOCAL VITERBI   -7.6109  0.71931
+STATS LOCAL FORWARD   -4.3416  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.31740  1.61716  1.24218  1.40668
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  0.00000        *
+      1   0.13870  3.40475  2.81780  3.30874      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+      2   2.96453  3.61254  0.11448  3.51980      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+      3   3.11339  2.61089  3.16060  0.17473      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+      4   3.46130  0.12689  3.50955  2.84948      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+      5   2.96453  3.61254  0.11448  3.51980      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+      6   3.11339  2.61089  3.16060  0.17473      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+      7   0.13870  3.40475  2.81780  3.30874      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+      8   0.13870  3.40475  2.81780  3.30874      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+      9   3.46130  0.12689  3.50955  2.84948      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     10   0.13870  3.40475  2.81780  3.30874     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     11   0.13870  3.40475  2.81780  3.30874     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     12   2.96453  3.61254  0.11448  3.51980     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     13   2.96453  3.61254  0.11448  3.51980     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     14   3.11339  2.61089  3.16060  0.17473     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     15   0.13870  3.40475  2.81780  3.30874     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     16   2.96453  3.61254  0.11448  3.51980     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     17   3.46130  0.12689  3.50955  2.84948     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     18   3.11339  2.61089  3.16060  0.17473     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     19   2.96453  3.61254  0.11448  3.51980     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     20   3.11339  2.61089  3.16060  0.17473     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     21   0.13870  3.40475  2.81780  3.30874     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     22   2.96453  3.61254  0.11448  3.51980     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     23   2.96453  3.61254  0.11448  3.51980     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     24   3.11339  2.61089  3.16060  0.17473     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     25   2.96453  3.61254  0.11448  3.51980     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     26   0.13870  3.40475  2.81780  3.30874     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     27   0.13870  3.40475  2.81780  3.30874     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     28   3.46130  0.12689  3.50955  2.84948     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     29   3.46130  0.12689  3.50955  2.84948     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     30   2.42061  2.46773  2.82739  0.26502     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     31   2.96453  3.61254  0.11448  3.51980     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     32   3.46130  0.12689  3.50955  2.84948     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     33   0.13870  3.40475  2.81780  3.30874     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     34   2.96453  3.61254  0.11448  3.51980     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     35   3.46130  0.12689  3.50955  2.84948     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     36   3.11339  2.61089  3.16060  0.17473     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     37   2.96453  3.61254  0.11448  3.51980     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     38   2.96453  3.61254  0.11448  3.51980     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     39   0.13870  3.40475  2.81780  3.30874     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     40   3.11339  2.61089  3.16060  0.17473     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     41   3.46130  0.12689  3.50955  2.84948     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     42   0.13870  3.40475  2.81780  3.30874     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     43   2.95906  2.25050  3.01199  0.23119     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     44   3.11339  2.61089  3.16060  0.17473     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02538  4.02538  1.46634  0.26236  1.09861  0.40547
+     45   1.62709  2.24353  2.39119  0.50105     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01835  4.00736        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Euglenozoa_1_SSU_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 20:55:06 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 4020611059
+STATS LOCAL MSV       -8.1570  0.72021
+STATS LOCAL VITERBI   -7.7566  0.72021
+STATS LOCAL FORWARD   -4.0990  0.72021
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33642  1.53820  1.24991  1.44428
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   0.15719  3.27118  2.73043  3.16274      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   0.15719  3.27118  2.73043  3.16274      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   0.15719  3.27118  2.73043  3.16274     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   3.30705  0.14631  3.36166  2.73626     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.86982  3.47591  0.13017  3.36931     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   0.15719  3.27118  2.73043  3.16274     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.86982  3.47591  0.13017  3.36931     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/E.hmm.h3f
Binary file ITSx_db/HMMs/E.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/E.hmm.h3i
Binary file ITSx_db/HMMs/E.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/E.hmm.h3m
Binary file ITSx_db/HMMs/E.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/E.hmm.h3p
Binary file ITSx_db/HMMs/E.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/F.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/F.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,65255 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ca_58S_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 14:07:35 2012
+NSEQ  24
+EFFN  3.272461
+CKSUM 1239174981
+STATS LOCAL MSV       -8.1718  0.71931
+STATS LOCAL VITERBI   -7.7338  0.71931
+STATS LOCAL FORWARD   -3.5765  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.36710  1.94048  0.91540  1.60363
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  0.00000        *
+      1   2.93618  3.57128  0.11898  3.47424      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+      2   3.07227  2.58474  3.12105  0.18133      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+      3   2.93618  3.57128  0.11898  3.47424      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+      4   2.93618  3.57128  0.11898  3.47424      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+      5   3.41442  0.13246  3.46466  2.81537      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+      6   2.93618  3.57128  0.11898  3.47424      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+      7   2.93618  3.57128  0.11898  3.47424      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+      8   0.14405  3.36405  2.79138  3.26418      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+      9   2.93618  3.57128  0.11898  3.47424      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     10   2.93618  3.57128  0.11898  3.47424     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     11   0.14405  3.36405  2.79138  3.26418     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     12   3.07227  2.58474  3.12105  0.18133     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     13   2.93618  3.57128  0.11898  3.47424     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     14   0.14405  3.36405  2.79138  3.26418     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     15   0.14405  3.36405  2.79138  3.26418     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     16   2.93618  3.57128  0.11898  3.47424     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     17   0.14405  3.36405  2.79138  3.26418     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     18   3.41442  0.13246  3.46466  2.81537     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     19   0.14405  3.36405  2.79138  3.26418     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     20   0.14405  3.36405  2.79138  3.26418     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     21   2.93618  3.57128  0.11898  3.47424     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     22   2.93618  3.57128  0.11898  3.47424     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     23   2.93618  3.57128  0.11898  3.47424     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     24   3.07227  2.58474  3.12105  0.18133     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     25   0.14405  3.36405  2.79138  3.26418     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     26   3.07227  2.58474  3.12105  0.18133     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     27   3.41442  0.13246  3.46466  2.81537     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     28   3.07227  2.58474  3.12105  0.18133     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     29   3.41442  0.13246  3.46466  2.81537     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     30   3.07227  2.58474  3.12105  0.18133     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     31   2.93618  3.57128  0.11898  3.47424     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     32   2.93618  3.57128  0.11898  3.47424     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     33   3.41442  0.13246  3.46466  2.81537     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     34   2.94687  2.29169  3.00002  0.22738     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     35   2.93618  3.57128  0.11898  3.47424     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     36   0.14405  3.36405  2.79138  3.26418     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     37   2.93618  3.57128  0.11898  3.47424     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     38   2.93618  3.57128  0.11898  3.47424     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     39   2.93618  3.57128  0.11898  3.47424     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     40   3.07227  2.58474  3.12105  0.18133     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     41   0.14405  3.36405  2.79138  3.26418     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     42   0.14405  3.36405  2.79138  3.26418     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     43   3.07227  2.58474  3.12105  0.18133     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     44   2.93618  3.57128  0.11898  3.47424     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00231  4.00231  1.46634  0.26236  1.09861  0.40547
+     45   0.95624  2.51422  0.81844  2.36852     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01879  3.98387        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ca_58S_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 14:07:56 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3084094019
+STATS LOCAL MSV       -7.5104  0.72786
+STATS LOCAL VITERBI   -8.2992  0.72786
+STATS LOCAL FORWARD   -2.7361  0.72786
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.38523  1.76536  1.00666  1.54566
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   1.89532  1.96405  1.06955  1.00436     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.81865  0.23582  2.88868  2.35662     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ca_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 14:07:48 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4134880411
+STATS LOCAL MSV       -7.5386  0.72700
+STATS LOCAL VITERBI   -8.2359  0.72700
+STATS LOCAL FORWARD   -2.9834  0.72700
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28368  1.70239  1.02070  1.71262
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.81865  0.23582  2.88868  2.35662     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Cr_58S_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 13:32:01 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2871339334
+STATS LOCAL MSV       -7.3173  0.72793
+STATS LOCAL VITERBI   -8.3191  0.72793
+STATS LOCAL FORWARD   -3.7044  0.72793
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.64878  1.74213  1.07035  1.23899
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Cr_58S_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 13:32:37 2012
+NSEQ  4
+EFFN  3.402344
+CKSUM 2082718384
+STATS LOCAL MSV       -7.1338  0.71932
+STATS LOCAL VITERBI   -7.7654  0.71932
+STATS LOCAL FORWARD   -4.3570  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62040  1.87208  1.07964  1.17552
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  0.00000        *
+      1   0.13862  3.40543  2.81825  3.30949      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      2   3.11409  2.61134  3.16126  0.17462      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      3   3.11409  2.61134  3.16126  0.17462      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      4   2.96500  3.61323  0.11441  3.52056      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      5   2.96500  3.61323  0.11441  3.52056      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      6   2.96500  3.61323  0.11441  3.52056      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      7   2.96500  3.61323  0.11441  3.52056      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      8   2.96500  3.61323  0.11441  3.52056      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      9   3.11409  2.61134  3.16126  0.17462      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     10   3.11409  2.61134  3.16126  0.17462     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     11   2.96500  3.61323  0.11441  3.52056     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     12   0.13862  3.40543  2.81825  3.30949     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     13   3.46209  0.12680  3.51031  2.85005     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     14   3.11409  2.61134  3.16126  0.17462     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     15   3.46209  0.12680  3.51031  2.85005     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     16   0.13862  3.40543  2.81825  3.30949     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     17   3.11409  2.61134  3.16126  0.17462     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     18   0.13862  3.40543  2.81825  3.30949     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     19   2.96500  3.61323  0.11441  3.52056     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     20   2.96500  3.61323  0.11441  3.52056     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     21   2.96500  3.61323  0.11441  3.52056     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     22   2.96500  3.61323  0.11441  3.52056     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     23   2.96500  3.61323  0.11441  3.52056     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     24   3.11409  2.61134  3.16126  0.17462     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     25   0.13862  3.40543  2.81825  3.30949     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     26   3.46209  0.12680  3.51031  2.85005     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     27   0.13862  3.40543  2.81825  3.30949     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     28   3.11409  2.61134  3.16126  0.17462     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     29   3.46209  0.12680  3.51031  2.85005     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     30   3.11409  2.61134  3.16126  0.17462     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     31   2.96500  3.61323  0.11441  3.52056     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     32   3.11409  2.61134  3.16126  0.17462     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     33   3.11409  2.61134  3.16126  0.17462     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     34   2.41957  0.95497  2.49149  0.81322     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     35   2.96500  3.61323  0.11441  3.52056     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     36   0.13862  3.40543  2.81825  3.30949     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     37   2.96500  3.61323  0.11441  3.52056     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     38   2.96500  3.61323  0.11441  3.52056     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     39   2.96500  3.61323  0.11441  3.52056     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     40   3.11409  2.61134  3.16126  0.17462     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     41   3.46209  0.12680  3.51031  2.85005     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     42   0.13862  3.40543  2.81825  3.30949     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     43   3.11409  2.61134  3.16126  0.17462     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     44   3.11409  2.61134  3.16126  0.17462     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     45   3.11409  2.61134  3.16126  0.17462     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01834  4.00776        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Cr_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 13:32:21 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2696739642
+STATS LOCAL MSV       -7.3238  0.72814
+STATS LOCAL VITERBI   -8.3458  0.72814
+STATS LOCAL FORWARD   -3.6883  0.72814
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.57598  1.82266  1.11290  1.19404
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
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+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
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+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
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+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:12:11 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2243327645
+STATS LOCAL MSV       -7.6365  0.72764
+STATS LOCAL VITERBI   -8.4513  0.72764
+STATS LOCAL FORWARD   -3.1656  0.72764
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40767  1.06102  1.51059  1.66916
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
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+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_eighteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:13:58 2012
+NSEQ  14
+EFFN  3.209473
+CKSUM 1915176416
+STATS LOCAL MSV       -8.0420  0.71931
+STATS LOCAL VITERBI   -7.6843  0.71931
+STATS LOCAL FORWARD   -3.8892  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47838  1.11688  1.31754  1.73216
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  0.00000        *
+      1   2.92158  3.55014  0.12136  3.45094      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      2   3.39050  0.13541  3.44174  2.79787      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      3   0.14687  3.34333  2.77786  3.24152      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      4   3.39050  0.13541  3.44174  2.79787      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      5   3.39050  0.13541  3.44174  2.79787      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      6   3.39050  0.13541  3.44174  2.79787      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      7   3.05148  2.57149  3.10104  0.18478      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      8   3.39050  0.13541  3.44174  2.79787      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      9   3.39050  0.13541  3.44174  2.79787      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     10   3.05148  2.57149  3.10104  0.18478     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     11   3.39050  0.13541  3.44174  2.79787     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     12   0.14687  3.34333  2.77786  3.24152     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     13   3.39050  0.13541  3.44174  2.79787     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     14   0.14687  3.34333  2.77786  3.24152     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     15   0.14687  3.34333  2.77786  3.24152     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     16   2.92158  3.55014  0.12136  3.45094     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     17   2.92158  3.55014  0.12136  3.45094     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     18   2.92158  3.55014  0.12136  3.45094     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     19   0.14687  3.34333  2.77786  3.24152     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     20   2.92158  3.55014  0.12136  3.45094     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     21   0.14687  3.34333  2.77786  3.24152     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     22   2.92158  3.55014  0.12136  3.45094     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     23   2.92158  3.55014  0.12136  3.45094     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     24   3.05148  2.57149  3.10104  0.18478     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     25   0.14687  3.34333  2.77786  3.24152     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     26   3.05148  2.57149  3.10104  0.18478     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     27   2.92158  3.55014  0.12136  3.45094     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     28   2.68235  0.39803  2.75144  1.62901     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     29   3.39050  0.13541  3.44174  2.79787     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     30   3.39050  0.13541  3.44174  2.79787     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     31   3.39050  0.13541  3.44174  2.79787     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     32   3.05148  2.57149  3.10104  0.18478     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     33   2.92158  3.55014  0.12136  3.45094     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     34   3.05148  2.57149  3.10104  0.18478     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     35   2.92158  3.55014  0.12136  3.45094     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     36   0.14687  3.34333  2.77786  3.24152     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     37   2.92158  3.55014  0.12136  3.45094     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     38   3.39050  0.13541  3.44174  2.79787     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     39   2.92158  3.55014  0.12136  3.45094     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     40   3.39050  0.13541  3.44174  2.79787     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     41   0.14687  3.34333  2.77786  3.24152     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     42   3.39050  0.13541  3.44174  2.79787     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     43   3.39050  0.13541  3.44174  2.79787     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     44   3.05148  2.57149  3.10104  0.18478     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     45   0.14687  3.34333  2.77786  3.24152     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01901  3.97208        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_eleven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:12:46 2012
+NSEQ  50
+EFFN  3.207397
+CKSUM 3396287535
+STATS LOCAL MSV       -8.1714  0.71932
+STATS LOCAL VITERBI   -7.6068  0.71932
+STATS LOCAL FORWARD   -4.1918  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.48059  1.14781  1.45890  1.50206
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  0.00000        *
+      1   3.38970  0.13551  3.44098  2.79729      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+      2   0.14697  3.34263  2.77741  3.24076      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+      3   3.38970  0.13551  3.44098  2.79729      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+      4   3.38970  0.13551  3.44098  2.79729      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+      5   2.92110  3.54943  0.12144  3.45016      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+      6   0.14697  3.34263  2.77741  3.24076      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+      7   2.92110  3.54943  0.12144  3.45016      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+      8   3.38970  0.13551  3.44098  2.79729      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+      9   3.05078  2.57105  3.10038  0.18490      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     10   3.38970  0.13551  3.44098  2.79729     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     11   3.05078  2.57105  3.10038  0.18490     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     12   0.14697  3.34263  2.77741  3.24076     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     13   3.38970  0.13551  3.44098  2.79729     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     14   3.38970  0.13551  3.44098  2.79729     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     15   3.38970  0.13551  3.44098  2.79729     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     16   2.92110  3.54943  0.12144  3.45016     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     17   0.14697  3.34263  2.77741  3.24076     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     18   2.92110  3.54943  0.12144  3.45016     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     19   3.38970  0.13551  3.44098  2.79729     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     20   0.14697  3.34263  2.77741  3.24076     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     21   3.38970  0.13551  3.44098  2.79729     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     22   2.92110  3.54943  0.12144  3.45016     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     23   2.92110  3.54943  0.12144  3.45016     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     24   3.05078  2.57105  3.10038  0.18490     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     25   0.14697  3.34263  2.77741  3.24076     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     26   3.05078  2.57105  3.10038  0.18490     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     27   2.92110  3.54943  0.12144  3.45016     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     28   3.05078  2.57105  3.10038  0.18490     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     29   3.38970  0.13551  3.44098  2.79729     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     30   3.38970  0.13551  3.44098  2.79729     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     31   3.38970  0.13551  3.44098  2.79729     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     32   0.14697  3.34263  2.77741  3.24076     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     33   3.05078  2.57105  3.10038  0.18490     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     34   3.05078  2.57105  3.10038  0.18490     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     35   2.92110  3.54943  0.12144  3.45016     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     36   0.14697  3.34263  2.77741  3.24076     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     37   2.92110  3.54943  0.12144  3.45016     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     38   3.38970  0.13551  3.44098  2.79729     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     39   2.92110  3.54943  0.12144  3.45016     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     40   3.38970  0.13551  3.44098  2.79729     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     41   3.05078  2.57105  3.10038  0.18490     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     42   0.14697  3.34263  2.77741  3.24076     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     43   3.05078  2.57105  3.10038  0.18490     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     44   3.05078  2.57105  3.10038  0.18490     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     45   0.14697  3.34263  2.77741  3.24076     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01902  3.97169        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fifteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:13:25 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1052545355
+STATS LOCAL MSV       -8.0961  0.72037
+STATS LOCAL VITERBI   -7.7465  0.72037
+STATS LOCAL FORWARD   -3.8461  0.72037
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72364  1.14592  1.45979  1.30428
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   0.15719  3.27118  2.73043  3.16274      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   3.30705  0.14631  3.36166  2.73626     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fifty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb  9 11:55:14 2012
+NSEQ  19
+EFFN  3.363037
+CKSUM 828620065
+STATS LOCAL MSV       -8.0656  0.71932
+STATS LOCAL VITERBI   -7.8090  0.71932
+STATS LOCAL FORWARD   -3.9545  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.59576  1.19371  1.43722  1.36038
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  0.00000        *
+      1   3.10158  2.60339  3.14924  0.17660      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+      2   3.44789  0.12846  3.49672  2.83975      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+      3   3.44789  0.12846  3.49672  2.83975      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+      4   2.95646  3.60076  0.11575  3.50679      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+      5   2.95646  3.60076  0.11575  3.50679      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+      6   0.14021  3.39310  2.81025  3.29598      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+      7   3.44789  0.12846  3.49672  2.83975      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+      8   2.95646  3.60076  0.11575  3.50679      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+      9   0.14021  3.39310  2.81025  3.29598      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     10   3.44789  0.12846  3.49672  2.83975     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     11   0.14021  3.39310  2.81025  3.29598     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     12   3.44789  0.12846  3.49672  2.83975     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     13   3.44789  0.12846  3.49672  2.83975     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     14   3.44789  0.12846  3.49672  2.83975     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     15   3.44789  0.12846  3.49672  2.83975     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     16   3.44789  0.12846  3.49672  2.83975     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     17   2.95646  3.60076  0.11575  3.50679     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     18   3.10158  2.60339  3.14924  0.17660     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     19   2.95646  3.60076  0.11575  3.50679     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     20   0.14021  3.39310  2.81025  3.29598     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     21   3.10158  2.60339  3.14924  0.17660     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     22   0.14021  3.39310  2.81025  3.29598     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     23   2.95646  3.60076  0.11575  3.50679     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     24   3.10158  2.60339  3.14924  0.17660     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     25   0.14021  3.39310  2.81025  3.29598     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     26   3.10158  2.60339  3.14924  0.17660     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     27   2.95646  3.60076  0.11575  3.50679     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     28   3.44789  0.12846  3.49672  2.83975     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     29   3.44789  0.12846  3.49672  2.83975     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     30   3.44789  0.12846  3.49672  2.83975     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     31   3.44789  0.12846  3.49672  2.83975     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     32   0.67914  2.54834  1.12560  2.40486     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     33   3.10158  2.60339  3.14924  0.17660     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     34   3.10158  2.60339  3.14924  0.17660     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     35   2.95646  3.60076  0.11575  3.50679     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     36   0.14021  3.39310  2.81025  3.29598     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     37   2.95646  3.60076  0.11575  3.50679     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     38   3.44789  0.12846  3.49672  2.83975     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     39   2.95646  3.60076  0.11575  3.50679     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     40   3.10158  2.60339  3.14924  0.17660     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     41   3.10158  2.60339  3.14924  0.17660     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     42   0.14021  3.39310  2.81025  3.29598     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     43   3.10158  2.60339  3.14924  0.17660     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     44   3.10158  2.60339  3.14924  0.17660     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     45   3.10158  2.60339  3.14924  0.17660     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01847  4.00059        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fiftyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb  9 12:54:54 2012
+NSEQ  26
+EFFN  3.348389
+CKSUM 1469927080
+STATS LOCAL MSV       -7.9913  0.71933
+STATS LOCAL VITERBI   -7.6268  0.71933
+STATS LOCAL FORWARD   -4.0718  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47178  1.60222  1.31120  1.20551
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  0.00000        *
+      1   2.95324  3.59606  0.11625  3.50160      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+      2   3.44255  0.12909  3.49161  2.83587      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+      3   0.14082  3.38846  2.80725  3.29090      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+      4   3.44255  0.12909  3.49161  2.83587      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+      5   3.44255  0.12909  3.49161  2.83587      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+      6   3.09689  2.60041  3.14473  0.17735      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+      7   3.09689  2.60041  3.14473  0.17735      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+      8   3.09689  2.60041  3.14473  0.17735      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+      9   3.09689  2.60041  3.14473  0.17735      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     10   2.95324  3.59606  0.11625  3.50160     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     11   2.95324  3.59606  0.11625  3.50160     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     12   3.09689  2.60041  3.14473  0.17735     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     13   0.14082  3.38846  2.80725  3.29090     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     14   3.09689  2.60041  3.14473  0.17735     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     15   3.09689  2.60041  3.14473  0.17735     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     16   3.44255  0.12909  3.49161  2.83587     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     17   3.44255  0.12909  3.49161  2.83587     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     18   2.95324  3.59606  0.11625  3.50160     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     19   0.14082  3.38846  2.80725  3.29090     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     20   0.14082  3.38846  2.80725  3.29090     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     21   0.14082  3.38846  2.80725  3.29090     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     22   2.95324  3.59606  0.11625  3.50160     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     23   2.95324  3.59606  0.11625  3.50160     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     24   3.09689  2.60041  3.14473  0.17735     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     25   0.14082  3.38846  2.80725  3.29090     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     26   2.81926  1.98984  2.87734  0.29122     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     27   2.95324  3.59606  0.11625  3.50160     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     28   3.44255  0.12909  3.49161  2.83587     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     29   3.44255  0.12909  3.49161  2.83587     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     30   3.44255  0.12909  3.49161  2.83587     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     31   2.95324  3.59606  0.11625  3.50160     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     32   2.95324  3.59606  0.11625  3.50160     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     33   3.09689  2.60041  3.14473  0.17735     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     34   3.09689  2.60041  3.14473  0.17735     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     35   2.95324  3.59606  0.11625  3.50160     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     36   0.14082  3.38846  2.80725  3.29090     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     37   2.95324  3.59606  0.11625  3.50160     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     38   3.09689  2.60041  3.14473  0.17735     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     39   0.14082  3.38846  2.80725  3.29090     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     40   3.09689  2.60041  3.14473  0.17735     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     41   3.09689  2.60041  3.14473  0.17735     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     42   0.14082  3.38846  2.80725  3.29090     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     43   3.09689  2.60041  3.14473  0.17735     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     44   2.95324  3.59606  0.11625  3.50160     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     45   0.14082  3.38846  2.80725  3.29090     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01852  3.99790        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fiftyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb  9 11:55:50 2012
+NSEQ  5
+EFFN  3.374023
+CKSUM 1967722645
+STATS LOCAL MSV       -7.4873  0.71933
+STATS LOCAL VITERBI   -7.8126  0.71933
+STATS LOCAL FORWARD   -3.9268  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.53388  1.19326  1.49439  1.35990
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  0.00000        *
+      1   3.10509  2.60562  3.15261  0.17604      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+      2   3.45188  0.12799  3.50054  2.84264      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+      3   3.45188  0.12799  3.50054  2.84264      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+      4   2.95886  3.60427  0.11537  3.51066      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+      5   1.13967  2.57623  0.66135  2.43199      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+      6   0.13976  3.39656  2.81250  3.29977      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+      7   3.45188  0.12799  3.50054  2.84264      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+      8   2.95886  3.60427  0.11537  3.51066      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+      9   0.13976  3.39656  2.81250  3.29977      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     10   3.45188  0.12799  3.50054  2.84264     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     11   0.13976  3.39656  2.81250  3.29977     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     12   3.45188  0.12799  3.50054  2.84264     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     13   3.45188  0.12799  3.50054  2.84264     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     14   3.45188  0.12799  3.50054  2.84264     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     15   3.45188  0.12799  3.50054  2.84264     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     16   3.45188  0.12799  3.50054  2.84264     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     17   2.95886  3.60427  0.11537  3.51066     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     18   3.10509  2.60562  3.15261  0.17604     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     19   2.95886  3.60427  0.11537  3.51066     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     20   0.13976  3.39656  2.81250  3.29977     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     21   3.10509  2.60562  3.15261  0.17604     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     22   0.13976  3.39656  2.81250  3.29977     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     23   2.95886  3.60427  0.11537  3.51066     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     24   3.10509  2.60562  3.15261  0.17604     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     25   0.13976  3.39656  2.81250  3.29977     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     26   3.10509  2.60562  3.15261  0.17604     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     27   2.95886  3.60427  0.11537  3.51066     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     28   3.45188  0.12799  3.50054  2.84264     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     29   3.45188  0.12799  3.50054  2.84264     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     30   3.45188  0.12799  3.50054  2.84264     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     31   3.45188  0.12799  3.50054  2.84264     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     32   0.13976  3.39656  2.81250  3.29977     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     33   3.10509  2.60562  3.15261  0.17604     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     34   3.10509  2.60562  3.15261  0.17604     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     35   2.95886  3.60427  0.11537  3.51066     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     36   0.13976  3.39656  2.81250  3.29977     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     37   2.95886  3.60427  0.11537  3.51066     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     38   3.45188  0.12799  3.50054  2.84264     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     39   2.95886  3.60427  0.11537  3.51066     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     40   3.10509  2.60562  3.15261  0.17604     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     41   3.10509  2.60562  3.15261  0.17604     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     42   0.13976  3.39656  2.81250  3.29977     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     43   3.10509  2.60562  3.15261  0.17604     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     44   3.10509  2.60562  3.15261  0.17604     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02070  4.02070  1.46634  0.26236  1.09861  0.40547
+     45   3.10509  2.60562  3.15261  0.17604     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01844  4.00260        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fiftyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb  9 11:55:22 2012
+NSEQ  4
+EFFN  3.214844
+CKSUM 2866287227
+STATS LOCAL MSV       -7.9504  0.71933
+STATS LOCAL VITERBI   -7.7053  0.71933
+STATS LOCAL FORWARD   -3.9958  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55658  1.20087  1.38656  1.43432
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  0.00000        *
+      1   3.39256  0.13515  3.44371  2.79938      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      2   3.39256  0.13515  3.44371  2.79938      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      3   2.92285  3.55196  0.12115  3.45295      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      4   2.92285  3.55196  0.12115  3.45295      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      5   0.14663  3.34511  2.77903  3.24347      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      6   3.39256  0.13515  3.44371  2.79938      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      7   2.92285  3.55196  0.12115  3.45295      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      8   0.14663  3.34511  2.77903  3.24347      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      9   3.39256  0.13515  3.44371  2.79938      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     10   0.14663  3.34511  2.77903  3.24347     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     11   3.39256  0.13515  3.44371  2.79938     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     12   3.39256  0.13515  3.44371  2.79938     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     13   3.39256  0.13515  3.44371  2.79938     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     14   3.39256  0.13515  3.44371  2.79938     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     15   3.39256  0.13515  3.44371  2.79938     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     16   2.92285  3.55196  0.12115  3.45295     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     17   3.05326  2.57263  3.10276  0.18448     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     18   2.92285  3.55196  0.12115  3.45295     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     19   2.92285  3.55196  0.12115  3.45295     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     20   0.14663  3.34511  2.77903  3.24347     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     21   3.05326  2.57263  3.10276  0.18448     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     22   0.14663  3.34511  2.77903  3.24347     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     23   2.92285  3.55196  0.12115  3.45295     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     24   3.05326  2.57263  3.10276  0.18448     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     25   0.14663  3.34511  2.77903  3.24347     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     26   3.05326  2.57263  3.10276  0.18448     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     27   2.92285  3.55196  0.12115  3.45295     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     28   3.39256  0.13515  3.44371  2.79938     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     29   3.39256  0.13515  3.44371  2.79938     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     30   3.39256  0.13515  3.44371  2.79938     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     31   3.39256  0.13515  3.44371  2.79938     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     32   0.14663  3.34511  2.77903  3.24347     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     33   3.05326  2.57263  3.10276  0.18448     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     34   3.05326  2.57263  3.10276  0.18448     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     35   2.92285  3.55196  0.12115  3.45295     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     36   0.14663  3.34511  2.77903  3.24347     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     37   2.92285  3.55196  0.12115  3.45295     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     38   3.39256  0.13515  3.44371  2.79938     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     39   2.92285  3.55196  0.12115  3.45295     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     40   3.05326  2.57263  3.10276  0.18448     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     41   3.05326  2.57263  3.10276  0.18448     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     42   0.14663  3.34511  2.77903  3.24347     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     43   3.05326  2.57263  3.10276  0.18448     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     44   3.05326  2.57263  3.10276  0.18448     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     45   3.05326  2.57263  3.10276  0.18448     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01899  3.97309        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fiftythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb  9 11:55:39 2012
+NSEQ  41
+EFFN  3.315735
+CKSUM 3014699534
+STATS LOCAL MSV       -7.9548  0.71932
+STATS LOCAL VITERBI   -7.8151  0.71932
+STATS LOCAL FORWARD   -3.9589  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72309  1.19364  1.40154  1.30140
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  0.00000        *
+      1   3.08636  2.59371  3.13460  0.17904      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+      2   3.43054  0.13051  3.48011  2.82713      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+      3   3.43054  0.13051  3.48011  2.82713      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+      4   2.94597  3.58550  0.11741  3.48993      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+      5   2.94597  3.58550  0.11741  3.48993      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+      6   0.14219  3.37804  2.80048  3.27949      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+      7   3.43054  0.13051  3.48011  2.82713      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+      8   2.94597  3.58550  0.11741  3.48993      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+      9   0.14219  3.37804  2.80048  3.27949      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     10   3.43054  0.13051  3.48011  2.82713     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     11   3.08636  2.59371  3.13460  0.17904     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     12   3.43054  0.13051  3.48011  2.82713     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     13   3.43054  0.13051  3.48011  2.82713     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     14   3.43054  0.13051  3.48011  2.82713     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     15   3.43054  0.13051  3.48011  2.82713     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     16   3.43054  0.13051  3.48011  2.82713     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     17   2.94597  3.58550  0.11741  3.48993     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     18   3.08636  2.59371  3.13460  0.17904     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     19   2.94597  3.58550  0.11741  3.48993     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     20   0.14219  3.37804  2.80048  3.27949     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     21   3.08636  2.59371  3.13460  0.17904     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     22   0.14219  3.37804  2.80048  3.27949     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     23   2.94597  3.58550  0.11741  3.48993     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     24   3.08636  2.59371  3.13460  0.17904     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     25   0.14219  3.37804  2.80048  3.27949     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     26   3.08636  2.59371  3.13460  0.17904     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     27   2.94597  3.58550  0.11741  3.48993     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     28   3.43054  0.13051  3.48011  2.82713     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     29   3.43054  0.13051  3.48011  2.82713     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     30   3.43054  0.13051  3.48011  2.82713     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     31   3.43054  0.13051  3.48011  2.82713     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     32   1.97476  3.02349  0.27793  2.89632     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     33   3.08636  2.59371  3.13460  0.17904     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     34   3.08636  2.59371  3.13460  0.17904     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     35   2.94597  3.58550  0.11741  3.48993     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     36   0.14219  3.37804  2.80048  3.27949     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     37   2.94597  3.58550  0.11741  3.48993     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     38   3.08636  2.59371  3.13460  0.17904     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     39   2.94597  3.58550  0.11741  3.48993     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     40   3.08636  2.59371  3.13460  0.17904     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     41   3.43054  0.13051  3.48011  2.82713     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     42   0.14219  3.37804  2.80048  3.27949     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     43   3.08636  2.59371  3.13460  0.17904     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     44   3.08636  2.59371  3.13460  0.17904     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01019  4.01019  1.46634  0.26236  1.09861  0.40547
+     45   3.08636  2.59371  3.13460  0.17904     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01864  3.99189        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fiftytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb  9 11:55:31 2012
+NSEQ  20
+EFFN  3.442383
+CKSUM 2115145974
+STATS LOCAL MSV       -7.3483  0.71933
+STATS LOCAL VITERBI   -7.8184  0.71933
+STATS LOCAL FORWARD   -4.0113  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.61756  1.15897  1.41425  1.40772
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  0.00000        *
+      1   3.12669  2.61934  3.17338  0.17266      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      2   3.47635  0.12517  3.52395  2.86037      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      3   3.47635  0.12517  3.52395  2.86037      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      4   2.97356  3.62574  0.11309  3.53438      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      5   2.97356  3.62574  0.11309  3.53438      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      6   0.13703  3.41783  2.82627  3.32308      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      7   3.47635  0.12517  3.52395  2.86037      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      8   2.97356  3.62574  0.11309  3.53438      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      9   0.13703  3.41783  2.82627  3.32308      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     10   3.47635  0.12517  3.52395  2.86037     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     11   0.13703  3.41783  2.82627  3.32308     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     12   3.47635  0.12517  3.52395  2.86037     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     13   3.47635  0.12517  3.52395  2.86037     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     14   3.47635  0.12517  3.52395  2.86037     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     15   3.47635  0.12517  3.52395  2.86037     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     16   3.47635  0.12517  3.52395  2.86037     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     17   2.97356  3.62574  0.11309  3.53438     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     18   3.12669  2.61934  3.17338  0.17266     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     19   2.97356  3.62574  0.11309  3.53438     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     20   0.13703  3.41783  2.82627  3.32308     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     21   3.12669  2.61934  3.17338  0.17266     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     22   0.13703  3.41783  2.82627  3.32308     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     23   2.97356  3.62574  0.11309  3.53438     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     24   3.12669  2.61934  3.17338  0.17266     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     25   0.13703  3.41783  2.82627  3.32308     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     26   3.12669  2.61934  3.17338  0.17266     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     27   2.97356  3.62574  0.11309  3.53438     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     28   3.47635  0.12517  3.52395  2.86037     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     29   3.47635  0.12517  3.52395  2.86037     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     30   3.47635  0.12517  3.52395  2.86037     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     31   3.47635  0.12517  3.52395  2.86037     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     32   1.28718  2.64642  0.55983  2.50423     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     33   3.12669  2.61934  3.17338  0.17266     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     34   3.12669  2.61934  3.17338  0.17266     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     35   2.97356  3.62574  0.11309  3.53438     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     36   0.13703  3.41783  2.82627  3.32308     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     37   2.97356  3.62574  0.11309  3.53438     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     38   2.56378  0.53516  2.63481  1.32546     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     39   2.97356  3.62574  0.11309  3.53438     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     40   3.12669  2.61934  3.17338  0.17266     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     41   3.47635  0.12517  3.52395  2.86037     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     42   0.13703  3.41783  2.82627  3.32308     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     43   3.12669  2.61934  3.17338  0.17266     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     44   3.12669  2.61934  3.17338  0.17266     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     45   3.12669  2.61934  3.17338  0.17266     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01821  4.01501        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:11:45 2012
+NSEQ  10
+EFFN  3.442383
+CKSUM 3202215516
+STATS LOCAL MSV       -7.6141  0.71932
+STATS LOCAL VITERBI   -7.8353  0.71932
+STATS LOCAL FORWARD   -3.8791  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33684  1.22950  1.61287  1.40417
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  0.00000        *
+      1   3.47635  0.12517  3.52395  2.86037      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      2   0.13703  3.41783  2.82627  3.32308      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      3   3.12669  2.61934  3.17338  0.17266      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      4   3.47635  0.12517  3.52395  2.86037      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      5   2.97356  3.62574  0.11309  3.53438      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      6   0.13703  3.41783  2.82627  3.32308      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      7   3.12669  2.61934  3.17338  0.17266      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      8   3.47635  0.12517  3.52395  2.86037      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      9   3.47635  0.12517  3.52395  2.86037      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     10   3.12669  2.61934  3.17338  0.17266     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     11   3.12669  2.61934  3.17338  0.17266     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     12   0.13703  3.41783  2.82627  3.32308     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     13   2.46479  1.17531  2.53496  0.64058     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     14   3.47635  0.12517  3.52395  2.86037     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     15   3.47635  0.12517  3.52395  2.86037     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     16   0.13703  3.41783  2.82627  3.32308     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     17   2.97356  3.62574  0.11309  3.53438     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     18   2.97356  3.62574  0.11309  3.53438     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     19   0.13703  3.41783  2.82627  3.32308     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     20   0.13703  3.41783  2.82627  3.32308     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     21   3.47635  0.12517  3.52395  2.86037     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     22   2.97356  3.62574  0.11309  3.53438     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     23   0.13703  3.41783  2.82627  3.32308     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     24   3.12669  2.61934  3.17338  0.17266     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     25   0.13703  3.41783  2.82627  3.32308     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     26   3.47635  0.12517  3.52395  2.86037     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     27   2.97356  3.62574  0.11309  3.53438     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     28   3.47635  0.12517  3.52395  2.86037     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     29   3.47635  0.12517  3.52395  2.86037     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     30   3.47635  0.12517  3.52395  2.86037     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     31   2.69763  1.70956  2.76025  0.37337     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     32   0.13703  3.41783  2.82627  3.32308     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     33   3.12669  2.61934  3.17338  0.17266     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     34   3.12669  2.61934  3.17338  0.17266     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     35   2.97356  3.62574  0.11309  3.53438     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     36   0.13703  3.41783  2.82627  3.32308     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     37   2.97356  3.62574  0.11309  3.53438     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     38   3.47635  0.12517  3.52395  2.86037     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     39   2.97356  3.62574  0.11309  3.53438     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     40   3.12669  2.61934  3.17338  0.17266     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     41   3.47635  0.12517  3.52395  2.86037     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     42   0.13703  3.41783  2.82627  3.32308     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     43   3.12669  2.61934  3.17338  0.17266     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     44   3.12669  2.61934  3.17338  0.17266     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     45   0.13703  3.41783  2.82627  3.32308     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01821  4.01501        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_forty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:17:36 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1294487972
+STATS LOCAL MSV       -7.5495  0.72781
+STATS LOCAL VITERBI   -8.3582  0.72781
+STATS LOCAL FORWARD   -3.3793  0.72781
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66359  1.34080  1.21486  1.37771
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fortyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb  9 13:07:22 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2038431029
+STATS LOCAL MSV       -7.5779  0.72812
+STATS LOCAL VITERBI   -8.1520  0.72812
+STATS LOCAL FORWARD   -3.5212  0.72812
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34474  1.28485  1.50199  1.42706
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fortyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:47:22 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 444090394
+STATS LOCAL MSV       -7.5129  0.72759
+STATS LOCAL VITERBI   -8.1287  0.72759
+STATS LOCAL FORWARD   -3.2953  0.72759
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.46346  1.14724  1.38328  1.60795
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
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+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fortyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:47:13 2012
+NSEQ  5
+EFFN  3.129883
+CKSUM 3714924843
+STATS LOCAL MSV       -8.1501  0.71934
+STATS LOCAL VITERBI   -7.8142  0.71934
+STATS LOCAL FORWARD   -3.9377  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40919  1.15917  1.31765  1.74783
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  0.00000        *
+      1   2.90252  3.52266  0.12454  3.42069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      2   3.35951  0.13934  3.41202  2.77509      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      3   0.15061  3.31651  2.76031  3.21221      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      4   3.35951  0.13934  3.41202  2.77509      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      5   3.35951  0.13934  3.41202  2.77509      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      6   3.35951  0.13934  3.41202  2.77509      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      7   3.02470  2.55440  3.07528  0.18933      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      8   3.35951  0.13934  3.41202  2.77509      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      9   3.35951  0.13934  3.41202  2.77509      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     10   3.35951  0.13934  3.41202  2.77509     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     11   3.35951  0.13934  3.41202  2.77509     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     12   0.15061  3.31651  2.76031  3.21221     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     13   3.35951  0.13934  3.41202  2.77509     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     14   0.15061  3.31651  2.76031  3.21221     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     15   0.15061  3.31651  2.76031  3.21221     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     16   2.90252  3.52266  0.12454  3.42069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     17   2.90252  3.52266  0.12454  3.42069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     18   2.90252  3.52266  0.12454  3.42069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     19   0.15061  3.31651  2.76031  3.21221     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     20   2.90252  3.52266  0.12454  3.42069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     21   0.15061  3.31651  2.76031  3.21221     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     22   2.90252  3.52266  0.12454  3.42069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     23   2.90252  3.52266  0.12454  3.42069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     24   3.02470  2.55440  3.07528  0.18933     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     25   0.15061  3.31651  2.76031  3.21221     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     26   3.02470  2.55440  3.07528  0.18933     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     27   2.90252  3.52266  0.12454  3.42069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     28   3.02470  2.55440  3.07528  0.18933     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     29   3.35951  0.13934  3.41202  2.77509     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     30   3.35951  0.13934  3.41202  2.77509     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     31   3.35951  0.13934  3.41202  2.77509     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     32   3.02470  2.55440  3.07528  0.18933     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     33   2.90252  3.52266  0.12454  3.42069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     34   3.02470  2.55440  3.07528  0.18933     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     35   2.90252  3.52266  0.12454  3.42069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     36   0.15061  3.31651  2.76031  3.21221     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     37   2.90252  3.52266  0.12454  3.42069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     38   0.15061  3.31651  2.76031  3.21221     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     39   2.90252  3.52266  0.12454  3.42069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     40   3.35951  0.13934  3.41202  2.77509     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     41   0.15061  3.31651  2.76031  3.21221     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     42   3.35951  0.13934  3.41202  2.77509     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     43   3.35951  0.13934  3.41202  2.77509     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     44   3.02470  2.55440  3.07528  0.18933     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     45   0.15061  3.31651  2.76031  3.21221     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01931  3.95697        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fortynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 15:00:24 2012
+NSEQ  51
+EFFN  3.495667
+CKSUM 201070302
+STATS LOCAL MSV       -7.3682  0.71931
+STATS LOCAL VITERBI   -7.7784  0.71931
+STATS LOCAL FORWARD   -4.2104  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47031  1.38142  1.29850  1.40250
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  0.00000        *
+      1   3.14327  2.62986  3.18932  0.17011      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+      2   3.14327  2.62986  3.18932  0.17011      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+      3   2.98470  3.64207  0.11139  3.55245      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+      4   3.49501  0.12306  3.54180  2.87385      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+      5   0.13499  3.43408  2.83677  3.34089      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+      6   3.49501  0.12306  3.54180  2.87385      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+      7   3.49501  0.12306  3.54180  2.87385      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+      8   2.98470  3.64207  0.11139  3.55245      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+      9   3.49501  0.12306  3.54180  2.87385      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     10   3.49501  0.12306  3.54180  2.87385     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     11   3.49501  0.12306  3.54180  2.87385     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     12   3.14327  2.62986  3.18932  0.17011     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     13   3.14327  2.62986  3.18932  0.17011     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     14   0.93513  2.16955  2.17919  0.96731     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     15   3.14327  2.62986  3.18932  0.17011     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     16   2.98470  3.64207  0.11139  3.55245     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     17   2.98470  3.64207  0.11139  3.55245     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     18   2.98470  3.64207  0.11139  3.55245     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     19   0.13499  3.43408  2.83677  3.34089     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     20   2.98470  3.64207  0.11139  3.55245     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     21   3.14327  2.62986  3.18932  0.17011     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     22   2.98470  3.64207  0.11139  3.55245     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     23   2.98470  3.64207  0.11139  3.55245     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     24   3.14327  2.62986  3.18932  0.17011     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     25   0.13499  3.43408  2.83677  3.34089     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     26   3.49501  0.12306  3.54180  2.87385     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     27   0.52063  2.65612  1.36663  2.51736     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     28   3.49501  0.12306  3.54180  2.87385     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     29   3.49501  0.12306  3.54180  2.87385     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     30   3.49501  0.12306  3.54180  2.87385     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     31   2.64272  3.47874  0.14628  3.37928     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     32   0.13499  3.43408  2.83677  3.34089     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     33   3.14327  2.62986  3.18932  0.17011     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     34   3.14327  2.62986  3.18932  0.17011     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     35   2.98470  3.64207  0.11139  3.55245     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     36   0.13499  3.43408  2.83677  3.34089     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     37   2.98470  3.64207  0.11139  3.55245     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     38   0.13499  3.43408  2.83677  3.34089     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     39   2.98470  3.64207  0.11139  3.55245     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     40   3.14327  2.62986  3.18932  0.17011     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     41   3.49501  0.12306  3.54180  2.87385     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     42   0.13499  3.43408  2.83677  3.34089     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     43   3.14327  2.62986  3.18932  0.17011     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     44   0.13499  3.43408  2.83677  3.34089     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04229  4.04229  1.46634  0.26236  1.09861  0.40547
+     45   0.13499  3.43408  2.83677  3.34089     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01803  4.02458        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fortyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:30:02 2012
+NSEQ  15
+EFFN  3.226318
+CKSUM 297855115
+STATS LOCAL MSV       -8.0137  0.71932
+STATS LOCAL VITERBI   -7.6666  0.71932
+STATS LOCAL FORWARD   -4.1067  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47812  1.20187  1.38574  1.50884
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  0.00000        *
+      1   3.39694  0.13461  3.44792  2.80259      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+      2   0.14611  3.34891  2.78151  3.24762      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+      3   3.05707  2.57506  3.10643  0.18384      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+      4   3.39694  0.13461  3.44792  2.80259      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+      5   2.92553  3.55584  0.12071  3.45723      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+      6   0.14611  3.34891  2.78151  3.24762      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+      7   2.92553  3.55584  0.12071  3.45723      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+      8   3.39694  0.13461  3.44792  2.80259      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+      9   3.05707  2.57506  3.10643  0.18384      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     10   3.05707  2.57506  3.10643  0.18384     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     11   3.05707  2.57506  3.10643  0.18384     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     12   2.92553  3.55584  0.12071  3.45723     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     13   3.39694  0.13461  3.44792  2.80259     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     14   3.39694  0.13461  3.44792  2.80259     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     15   3.39694  0.13461  3.44792  2.80259     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     16   0.14611  3.34891  2.78151  3.24762     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     17   0.14611  3.34891  2.78151  3.24762     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     18   2.92553  3.55584  0.12071  3.45723     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     19   3.39694  0.13461  3.44792  2.80259     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     20   0.14611  3.34891  2.78151  3.24762     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     21   3.39694  0.13461  3.44792  2.80259     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     22   2.92553  3.55584  0.12071  3.45723     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     23   0.14611  3.34891  2.78151  3.24762     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     24   3.05707  2.57506  3.10643  0.18384     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     25   0.14611  3.34891  2.78151  3.24762     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     26   3.39694  0.13461  3.44792  2.80259     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     27   2.92553  3.55584  0.12071  3.45723     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     28   3.39694  0.13461  3.44792  2.80259     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     29   2.92553  3.55584  0.12071  3.45723     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     30   3.05707  2.57506  3.10643  0.18384     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     31   2.87955  2.17293  2.93512  0.25248     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     32   2.92553  3.55584  0.12071  3.45723     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     33   0.14611  3.34891  2.78151  3.24762     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     34   3.05707  2.57506  3.10643  0.18384     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     35   3.39694  0.13461  3.44792  2.80259     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     36   0.14611  3.34891  2.78151  3.24762     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     37   3.39694  0.13461  3.44792  2.80259     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     38   3.39694  0.13461  3.44792  2.80259     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     39   2.92553  3.55584  0.12071  3.45723     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     40   3.39694  0.13461  3.44792  2.80259     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     41   2.92553  3.55584  0.12071  3.45723     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     42   2.92553  3.55584  0.12071  3.45723     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     43   3.05707  2.57506  3.10643  0.18384     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     44   3.05707  2.57506  3.10643  0.18384     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     45   0.14611  3.34891  2.78151  3.24762     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01895  3.97525        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fortyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:53:39 2012
+NSEQ  50
+EFFN  3.207397
+CKSUM 3396287535
+STATS LOCAL MSV       -8.1714  0.71932
+STATS LOCAL VITERBI   -7.6068  0.71932
+STATS LOCAL FORWARD   -4.1918  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.48059  1.14781  1.45890  1.50206
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  0.00000        *
+      1   3.38970  0.13551  3.44098  2.79729      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+      2   0.14697  3.34263  2.77741  3.24076      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+      3   3.38970  0.13551  3.44098  2.79729      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+      4   3.38970  0.13551  3.44098  2.79729      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+      5   2.92110  3.54943  0.12144  3.45016      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+      6   0.14697  3.34263  2.77741  3.24076      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+      7   2.92110  3.54943  0.12144  3.45016      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+      8   3.38970  0.13551  3.44098  2.79729      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+      9   3.05078  2.57105  3.10038  0.18490      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     10   3.38970  0.13551  3.44098  2.79729     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     11   3.05078  2.57105  3.10038  0.18490     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     12   0.14697  3.34263  2.77741  3.24076     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     13   3.38970  0.13551  3.44098  2.79729     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     14   3.38970  0.13551  3.44098  2.79729     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     15   3.38970  0.13551  3.44098  2.79729     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     16   2.92110  3.54943  0.12144  3.45016     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     17   0.14697  3.34263  2.77741  3.24076     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     18   2.92110  3.54943  0.12144  3.45016     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     19   3.38970  0.13551  3.44098  2.79729     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     20   0.14697  3.34263  2.77741  3.24076     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     21   3.38970  0.13551  3.44098  2.79729     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     22   2.92110  3.54943  0.12144  3.45016     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     23   2.92110  3.54943  0.12144  3.45016     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     24   3.05078  2.57105  3.10038  0.18490     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     25   0.14697  3.34263  2.77741  3.24076     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     26   3.05078  2.57105  3.10038  0.18490     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     27   2.92110  3.54943  0.12144  3.45016     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     28   3.05078  2.57105  3.10038  0.18490     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     29   3.38970  0.13551  3.44098  2.79729     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     30   3.38970  0.13551  3.44098  2.79729     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     31   3.38970  0.13551  3.44098  2.79729     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     32   0.14697  3.34263  2.77741  3.24076     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     33   3.05078  2.57105  3.10038  0.18490     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     34   3.05078  2.57105  3.10038  0.18490     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     35   2.92110  3.54943  0.12144  3.45016     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     36   0.14697  3.34263  2.77741  3.24076     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     37   2.92110  3.54943  0.12144  3.45016     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     38   3.38970  0.13551  3.44098  2.79729     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     39   2.92110  3.54943  0.12144  3.45016     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     40   3.38970  0.13551  3.44098  2.79729     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     41   3.05078  2.57105  3.10038  0.18490     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     42   0.14697  3.34263  2.77741  3.24076     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     43   3.05078  2.57105  3.10038  0.18490     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     44   3.05078  2.57105  3.10038  0.18490     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99035  3.99035  1.46634  0.26236  1.09861  0.40547
+     45   0.14697  3.34263  2.77741  3.24076     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01902  3.97169        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fortysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb  9 13:05:06 2012
+NSEQ  9
+EFFN  3.291504
+CKSUM 447960315
+STATS LOCAL MSV       -8.0375  0.71931
+STATS LOCAL VITERBI   -7.7666  0.71931
+STATS LOCAL FORWARD   -4.4115  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81791  1.60663  1.14058  1.14747
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  0.00000        *
+      1   3.07849  2.58870  3.12703  0.18032      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      2   2.94052  3.57756  0.11828  3.48118      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      3   3.42154  0.13160  3.47149  2.82057      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      4   0.14323  3.37023  2.79540  3.27094      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      5   3.42154  0.13160  3.47149  2.82057      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      6   3.07849  2.58870  3.12703  0.18032      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      7   2.94052  3.57756  0.11828  3.48118      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      8   0.14323  3.37023  2.79540  3.27094      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      9   3.42154  0.13160  3.47149  2.82057      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     10   3.07849  2.58870  3.12703  0.18032     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     11   3.42154  0.13160  3.47149  2.82057     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     12   3.42154  0.13160  3.47149  2.82057     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     13   3.42154  0.13160  3.47149  2.82057     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     14   3.07849  2.58870  3.12703  0.18032     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     15   3.07849  2.58870  3.12703  0.18032     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     16   2.94052  3.57756  0.11828  3.48118     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     17   2.94052  3.57756  0.11828  3.48118     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     18   2.94052  3.57756  0.11828  3.48118     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     19   2.94052  3.57756  0.11828  3.48118     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     20   3.07849  2.58870  3.12703  0.18032     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     21   3.07849  2.58870  3.12703  0.18032     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     22   2.94052  3.57756  0.11828  3.48118     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     23   2.94052  3.57756  0.11828  3.48118     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     24   3.07849  2.58870  3.12703  0.18032     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     25   0.14323  3.37023  2.79540  3.27094     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     26   3.07849  2.58870  3.12703  0.18032     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     27   2.94052  3.57756  0.11828  3.48118     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     28   3.07849  2.58870  3.12703  0.18032     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     29   2.94052  3.57756  0.11828  3.48118     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     30   2.94052  3.57756  0.11828  3.48118     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     31   2.94052  3.57756  0.11828  3.48118     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     32   0.14323  3.37023  2.79540  3.27094     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     33   3.07849  2.58870  3.12703  0.18032     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     34   3.07849  2.58870  3.12703  0.18032     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     35   2.94052  3.57756  0.11828  3.48118     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     36   0.14323  3.37023  2.79540  3.27094     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     37   2.94052  3.57756  0.11828  3.48118     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     38   3.42154  0.13160  3.47149  2.82057     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     39   2.94052  3.57756  0.11828  3.48118     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     40   3.07849  2.58870  3.12703  0.18032     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     41   3.42154  0.13160  3.47149  2.82057     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     42   0.14323  3.37023  2.79540  3.27094     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     43   3.07849  2.58870  3.12703  0.18032     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     44   3.07849  2.58870  3.12703  0.18032     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     45   3.07849  2.58870  3.12703  0.18032     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01872  3.98741        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fortythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:47:03 2012
+NSEQ  14
+EFFN  3.209473
+CKSUM 1915176416
+STATS LOCAL MSV       -8.0420  0.71931
+STATS LOCAL VITERBI   -7.6843  0.71931
+STATS LOCAL FORWARD   -3.8892  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47838  1.11688  1.31754  1.73216
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  0.00000        *
+      1   2.92158  3.55014  0.12136  3.45094      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      2   3.39050  0.13541  3.44174  2.79787      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      3   0.14687  3.34333  2.77786  3.24152      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      4   3.39050  0.13541  3.44174  2.79787      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      5   3.39050  0.13541  3.44174  2.79787      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      6   3.39050  0.13541  3.44174  2.79787      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      7   3.05148  2.57149  3.10104  0.18478      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      8   3.39050  0.13541  3.44174  2.79787      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      9   3.39050  0.13541  3.44174  2.79787      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     10   3.05148  2.57149  3.10104  0.18478     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     11   3.39050  0.13541  3.44174  2.79787     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     12   0.14687  3.34333  2.77786  3.24152     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     13   3.39050  0.13541  3.44174  2.79787     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     14   0.14687  3.34333  2.77786  3.24152     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     15   0.14687  3.34333  2.77786  3.24152     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     16   2.92158  3.55014  0.12136  3.45094     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     17   2.92158  3.55014  0.12136  3.45094     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     18   2.92158  3.55014  0.12136  3.45094     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     19   0.14687  3.34333  2.77786  3.24152     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     20   2.92158  3.55014  0.12136  3.45094     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     21   0.14687  3.34333  2.77786  3.24152     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     22   2.92158  3.55014  0.12136  3.45094     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     23   2.92158  3.55014  0.12136  3.45094     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     24   3.05148  2.57149  3.10104  0.18478     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     25   0.14687  3.34333  2.77786  3.24152     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     26   3.05148  2.57149  3.10104  0.18478     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     27   2.92158  3.55014  0.12136  3.45094     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     28   2.68235  0.39803  2.75144  1.62901     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     29   3.39050  0.13541  3.44174  2.79787     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     30   3.39050  0.13541  3.44174  2.79787     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     31   3.39050  0.13541  3.44174  2.79787     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     32   3.05148  2.57149  3.10104  0.18478     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     33   2.92158  3.55014  0.12136  3.45094     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     34   3.05148  2.57149  3.10104  0.18478     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     35   2.92158  3.55014  0.12136  3.45094     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     36   0.14687  3.34333  2.77786  3.24152     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     37   2.92158  3.55014  0.12136  3.45094     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     38   3.39050  0.13541  3.44174  2.79787     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     39   2.92158  3.55014  0.12136  3.45094     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     40   3.39050  0.13541  3.44174  2.79787     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     41   0.14687  3.34333  2.77786  3.24152     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     42   3.39050  0.13541  3.44174  2.79787     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     43   3.39050  0.13541  3.44174  2.79787     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     44   3.05148  2.57149  3.10104  0.18478     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     45   0.14687  3.34333  2.77786  3.24152     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01901  3.97208        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fortytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:44:08 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3660751287
+STATS LOCAL MSV       -8.1845  0.71983
+STATS LOCAL VITERBI   -7.8632  0.71983
+STATS LOCAL FORWARD   -3.7067  0.71983
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55587  1.05969  1.32233  1.73774
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   0.15719  3.27118  2.73043  3.16274     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   0.15719  3.27118  2.73043  3.16274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   3.30705  0.14631  3.36166  2.73626     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:11:38 2012
+NSEQ  143
+EFFN  3.277374
+CKSUM 1216097003
+STATS LOCAL MSV       -8.0025  0.71931
+STATS LOCAL VITERBI   -7.9573  0.71931
+STATS LOCAL FORWARD   -3.8292  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34004  1.15935  1.53083  1.56966
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  0.00000        *
+      1   3.41626  0.13224  3.46643  2.81672      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      2   0.14384  3.36565  2.79242  3.26593      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      3   3.07388  2.58577  3.12260  0.18107      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      4   3.41626  0.13224  3.46643  2.81672      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      5   2.93731  3.57290  0.11880  3.47604      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      6   0.14384  3.36565  2.79242  3.26593      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      7   2.93731  3.57290  0.11880  3.47604      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      8   3.41626  0.13224  3.46643  2.81672      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      9   3.41626  0.13224  3.46643  2.81672      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     10   3.07388  2.58577  3.12260  0.18107     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     11   3.07388  2.58577  3.12260  0.18107     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     12   0.14384  3.36565  2.79242  3.26593     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     13   2.52004  0.32226  2.77460  2.01997     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     14   3.41626  0.13224  3.46643  2.81672     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     15   3.41626  0.13224  3.46643  2.81672     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     16   0.14384  3.36565  2.79242  3.26593     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     17   2.93731  3.57290  0.11880  3.47604     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     18   2.93731  3.57290  0.11880  3.47604     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     19   0.14384  3.36565  2.79242  3.26593     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     20   0.14384  3.36565  2.79242  3.26593     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     21   3.41626  0.13224  3.46643  2.81672     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     22   2.93731  3.57290  0.11880  3.47604     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     23   0.14384  3.36565  2.79242  3.26593     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     24   3.07388  2.58577  3.12260  0.18107     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     25   0.14384  3.36565  2.79242  3.26593     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     26   3.41626  0.13224  3.46643  2.81672     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     27   2.93731  3.57290  0.11880  3.47604     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     28   3.41626  0.13224  3.46643  2.81672     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     29   3.41626  0.13224  3.46643  2.81672     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     30   3.41626  0.13224  3.46643  2.81672     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     31   3.41626  0.13224  3.46643  2.81672     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     32   0.14384  3.36565  2.79242  3.26593     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     33   3.07388  2.58577  3.12260  0.18107     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     34   3.07388  2.58577  3.12260  0.18107     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     35   2.93731  3.57290  0.11880  3.47604     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     36   0.14384  3.36565  2.79242  3.26593     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     37   2.93731  3.57290  0.11880  3.47604     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     38   3.41626  0.13224  3.46643  2.81672     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     39   2.93731  3.57290  0.11880  3.47604     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     40   3.07388  2.58577  3.12260  0.18107     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     41   3.41626  0.13224  3.46643  2.81672     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     42   0.14384  3.36565  2.79242  3.26593     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     43   3.07388  2.58577  3.12260  0.18107     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     44   3.07388  2.58577  3.12260  0.18107     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     45   0.14384  3.36565  2.79242  3.26593     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01877  3.98479        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_fourteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:13:17 2012
+NSEQ  6
+EFFN  3.249023
+CKSUM 2990586436
+STATS LOCAL MSV       -8.2300  0.71932
+STATS LOCAL VITERBI   -7.5586  0.71932
+STATS LOCAL FORWARD   -4.2021  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34169  1.25857  1.53072  1.43483
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  0.00000        *
+      1   3.40558  0.13354  3.45619  2.80891      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      2   0.14509  3.35639  2.78639  3.25580      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      3   3.40558  0.13354  3.45619  2.80891      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      4   3.40558  0.13354  3.45619  2.80891      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      5   2.93080  3.56347  0.11985  3.46564      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      6   0.14509  3.35639  2.78639  3.25580      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      7   2.93080  3.56347  0.11985  3.46564      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      8   2.93080  3.56347  0.11985  3.46564      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      9   0.14509  3.35639  2.78639  3.25580      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     10   3.06457  2.57984  3.11364  0.18260     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     11   3.06457  2.57984  3.11364  0.18260     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     12   2.93080  3.56347  0.11985  3.46564     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     13   3.40558  0.13354  3.45619  2.80891     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     14   3.40558  0.13354  3.45619  2.80891     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     15   3.40558  0.13354  3.45619  2.80891     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     16   0.14509  3.35639  2.78639  3.25580     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     17   3.06457  2.57984  3.11364  0.18260     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     18   3.40558  0.13354  3.45619  2.80891     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     19   3.40558  0.13354  3.45619  2.80891     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     20   0.14509  3.35639  2.78639  3.25580     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     21   3.40558  0.13354  3.45619  2.80891     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     22   2.93080  3.56347  0.11985  3.46564     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     23   2.93080  3.56347  0.11985  3.46564     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     24   3.06457  2.57984  3.11364  0.18260     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     25   0.14509  3.35639  2.78639  3.25580     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     26   3.06457  2.57984  3.11364  0.18260     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     27   0.14509  3.35639  2.78639  3.25580     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     28   3.40558  0.13354  3.45619  2.80891     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     29   3.40558  0.13354  3.45619  2.80891     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     30   0.14509  3.35639  2.78639  3.25580     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     31   3.40558  0.13354  3.45619  2.80891     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     32   0.14509  3.35639  2.78639  3.25580     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     33   3.06457  2.57984  3.11364  0.18260     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     34   3.06457  2.57984  3.11364  0.18260     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     35   2.93080  3.56347  0.11985  3.46564     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     36   0.14509  3.35639  2.78639  3.25580     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     37   2.93080  3.56347  0.11985  3.46564     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     38   3.06457  2.57984  3.11364  0.18260     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     39   2.93080  3.56347  0.11985  3.46564     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     40   3.06457  2.57984  3.11364  0.18260     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     41   3.40558  0.13354  3.45619  2.80891     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     42   0.14509  3.35639  2.78639  3.25580     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     43   3.06457  2.57984  3.11364  0.18260     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     44   3.06457  2.57984  3.11364  0.18260     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     45   0.14509  3.35639  2.78639  3.25580     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01887  3.97950        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:12:19 2012
+NSEQ  20
+EFFN  3.364258
+CKSUM 1686556577
+STATS LOCAL MSV       -8.1341  0.71933
+STATS LOCAL VITERBI   -7.7337  0.71933
+STATS LOCAL FORWARD   -3.8665  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40491  1.22642  1.53082  1.40685
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  0.00000        *
+      1   3.44834  0.12841  3.49715  2.84007      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      2   0.14016  3.39348  2.81050  3.29640      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      3   3.10197  2.60364  3.14962  0.17654      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      4   3.44834  0.12841  3.49715  2.84007      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      5   2.95673  3.60115  0.11570  3.50722      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      6   0.14016  3.39348  2.81050  3.29640      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      7   2.95673  3.60115  0.11570  3.50722      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      8   3.44834  0.12841  3.49715  2.84007      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      9   3.10197  2.60364  3.14962  0.17654      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     10   3.10197  2.60364  3.14962  0.17654     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     11   3.10197  2.60364  3.14962  0.17654     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     12   2.95673  3.60115  0.11570  3.50722     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     13   3.44834  0.12841  3.49715  2.84007     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     14   3.44834  0.12841  3.49715  2.84007     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     15   3.44834  0.12841  3.49715  2.84007     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     16   0.14016  3.39348  2.81050  3.29640     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     17   0.14016  3.39348  2.81050  3.29640     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     18   2.95673  3.60115  0.11570  3.50722     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     19   3.44834  0.12841  3.49715  2.84007     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     20   0.14016  3.39348  2.81050  3.29640     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     21   3.44834  0.12841  3.49715  2.84007     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     22   2.95673  3.60115  0.11570  3.50722     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     23   0.14016  3.39348  2.81050  3.29640     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     24   3.10197  2.60364  3.14962  0.17654     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     25   0.14016  3.39348  2.81050  3.29640     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     26   3.10197  2.60364  3.14962  0.17654     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     27   2.95673  3.60115  0.11570  3.50722     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     28   2.44045  0.73552  2.51288  1.04246     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     29   3.44834  0.12841  3.49715  2.84007     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     30   3.44834  0.12841  3.49715  2.84007     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     31   3.44834  0.12841  3.49715  2.84007     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     32   0.14016  3.39348  2.81050  3.29640     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     33   3.10197  2.60364  3.14962  0.17654     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     34   3.10197  2.60364  3.14962  0.17654     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     35   2.95673  3.60115  0.11570  3.50722     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     36   0.14016  3.39348  2.81050  3.29640     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     37   2.95673  3.60115  0.11570  3.50722     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     38   3.44834  0.12841  3.49715  2.84007     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     39   2.95673  3.60115  0.11570  3.50722     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     40   3.10197  2.60364  3.14962  0.17654     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     41   3.44834  0.12841  3.49715  2.84007     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     42   0.14016  3.39348  2.81050  3.29640     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     43   3.10197  2.60364  3.14962  0.17654     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     44   3.10197  2.60364  3.14962  0.17654     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     45   0.14016  3.39348  2.81050  3.29640     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01847  4.00081        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_nineteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:14:08 2012
+NSEQ  5
+EFFN  3.129883
+CKSUM 3714924843
+STATS LOCAL MSV       -8.1501  0.71934
+STATS LOCAL VITERBI   -7.8142  0.71934
+STATS LOCAL FORWARD   -3.9377  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40919  1.15917  1.31765  1.74783
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  0.00000        *
+      1   2.90252  3.52266  0.12454  3.42069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      2   3.35951  0.13934  3.41202  2.77509      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      3   0.15061  3.31651  2.76031  3.21221      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      4   3.35951  0.13934  3.41202  2.77509      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      5   3.35951  0.13934  3.41202  2.77509      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      6   3.35951  0.13934  3.41202  2.77509      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      7   3.02470  2.55440  3.07528  0.18933      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      8   3.35951  0.13934  3.41202  2.77509      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      9   3.35951  0.13934  3.41202  2.77509      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     10   3.35951  0.13934  3.41202  2.77509     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     11   3.35951  0.13934  3.41202  2.77509     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     12   0.15061  3.31651  2.76031  3.21221     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     13   3.35951  0.13934  3.41202  2.77509     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     14   0.15061  3.31651  2.76031  3.21221     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     15   0.15061  3.31651  2.76031  3.21221     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     16   2.90252  3.52266  0.12454  3.42069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     17   2.90252  3.52266  0.12454  3.42069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     18   2.90252  3.52266  0.12454  3.42069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     19   0.15061  3.31651  2.76031  3.21221     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     20   2.90252  3.52266  0.12454  3.42069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     21   0.15061  3.31651  2.76031  3.21221     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     22   2.90252  3.52266  0.12454  3.42069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     23   2.90252  3.52266  0.12454  3.42069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     24   3.02470  2.55440  3.07528  0.18933     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     25   0.15061  3.31651  2.76031  3.21221     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     26   3.02470  2.55440  3.07528  0.18933     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     27   2.90252  3.52266  0.12454  3.42069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     28   3.02470  2.55440  3.07528  0.18933     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     29   3.35951  0.13934  3.41202  2.77509     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     30   3.35951  0.13934  3.41202  2.77509     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     31   3.35951  0.13934  3.41202  2.77509     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     32   3.02470  2.55440  3.07528  0.18933     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     33   2.90252  3.52266  0.12454  3.42069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     34   3.02470  2.55440  3.07528  0.18933     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     35   2.90252  3.52266  0.12454  3.42069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     36   0.15061  3.31651  2.76031  3.21221     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     37   2.90252  3.52266  0.12454  3.42069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     38   0.15061  3.31651  2.76031  3.21221     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     39   2.90252  3.52266  0.12454  3.42069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     40   3.35951  0.13934  3.41202  2.77509     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     41   0.15061  3.31651  2.76031  3.21221     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     42   3.35951  0.13934  3.41202  2.77509     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     43   3.35951  0.13934  3.41202  2.77509     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     44   3.02470  2.55440  3.07528  0.18933     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     45   0.15061  3.31651  2.76031  3.21221     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01931  3.95697        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:11:06 2012
+NSEQ  93
+EFFN  3.204254
+CKSUM 1376255212
+STATS LOCAL MSV       -8.1180  0.71931
+STATS LOCAL VITERBI   -7.6518  0.71931
+STATS LOCAL FORWARD   -4.1483  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72511  1.09620  1.32910  1.50063
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98977  3.98977  1.46634  0.26236  0.00000        *
+      1   0.14711  3.34159  2.77673  3.23962      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98977  3.98977  1.46634  0.26236  1.09861  0.40547
+      2   3.38849  0.13566  3.43982  2.79640      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98977  3.98977  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
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+     45   2.46029  3.30634  0.17800  3.19434     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01903  3.97109        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:11:59 2012
+NSEQ  23
+EFFN  3.225952
+CKSUM 63160430
+STATS LOCAL MSV       -7.9817  0.71932
+STATS LOCAL VITERBI   -7.8714  0.71932
+STATS LOCAL FORWARD   -3.9916  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34283  1.20350  1.53189  1.50227
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99378  3.99378  1.46634  0.26236  0.00000        *
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+     44   3.05695  2.57498  3.10631  0.18387     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99378  3.99378  1.46634  0.26236  1.09861  0.40547
+     45   0.14612  3.34879  2.78143  3.24749     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01895  3.97518        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_seventeen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:13:41 2012
+NSEQ  39
+EFFN  3.127808
+CKSUM 3719870374
+STATS LOCAL MSV       -8.2144  0.71931
+STATS LOCAL VITERBI   -7.8456  0.71931
+STATS LOCAL FORWARD   -3.7513  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55799  1.05598  1.32230  1.74258
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  0.00000        *
+      1   2.90201  3.52193  0.12462  3.41989      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+      2   3.35869  0.13945  3.41123  2.77449      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+      3   0.15071  3.31580  2.75984  3.21143      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+      4   3.35869  0.13945  3.41123  2.77449      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+      5   3.35869  0.13945  3.41123  2.77449      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+      6   3.35869  0.13945  3.41123  2.77449      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+      7   3.02400  2.55395  3.07460  0.18945      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+      8   3.35869  0.13945  3.41123  2.77449      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+      9   3.35869  0.13945  3.41123  2.77449      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     10   3.35869  0.13945  3.41123  2.77449     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     11   3.35869  0.13945  3.41123  2.77449     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     12   0.15071  3.31580  2.75984  3.21143     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     13   3.35869  0.13945  3.41123  2.77449     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     14   0.15071  3.31580  2.75984  3.21143     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     15   0.15071  3.31580  2.75984  3.21143     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     16   2.90201  3.52193  0.12462  3.41989     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     17   2.90201  3.52193  0.12462  3.41989     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     18   2.90201  3.52193  0.12462  3.41989     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     19   0.15071  3.31580  2.75984  3.21143     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     20   2.90201  3.52193  0.12462  3.41989     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     21   3.02400  2.55395  3.07460  0.18945     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     22   2.90201  3.52193  0.12462  3.41989     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     23   2.90201  3.52193  0.12462  3.41989     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     24   3.02400  2.55395  3.07460  0.18945     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     25   0.15071  3.31580  2.75984  3.21143     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     26   3.02400  2.55395  3.07460  0.18945     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     27   2.90201  3.52193  0.12462  3.41989     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     28   3.35869  0.13945  3.41123  2.77449     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     29   3.35869  0.13945  3.41123  2.77449     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     30   3.35869  0.13945  3.41123  2.77449     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     31   3.35869  0.13945  3.41123  2.77449     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     32   3.02400  2.55395  3.07460  0.18945     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     33   2.90201  3.52193  0.12462  3.41989     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     34   3.02400  2.55395  3.07460  0.18945     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     35   2.90201  3.52193  0.12462  3.41989     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     36   0.15071  3.31580  2.75984  3.21143     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     37   2.90201  3.52193  0.12462  3.41989     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     38   3.35869  0.13945  3.41123  2.77449     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     39   2.90201  3.52193  0.12462  3.41989     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     40   3.35869  0.13945  3.41123  2.77449     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     41   0.15071  3.31580  2.75984  3.21143     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     42   3.35869  0.13945  3.41123  2.77449     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     43   3.35869  0.13945  3.41123  2.77449     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     44   3.02400  2.55395  3.07460  0.18945     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03826  3.97552  3.97552  1.46634  0.26236  1.09861  0.40547
+     45   0.15071  3.31580  2.75984  3.21143     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01931  3.95658        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:11:52 2012
+NSEQ  19
+EFFN  3.251709
+CKSUM 3691037779
+STATS LOCAL MSV       -8.0405  0.71934
+STATS LOCAL VITERBI   -7.8385  0.71934
+STATS LOCAL FORWARD   -3.7527  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34330  1.19986  1.61571  1.43116
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  0.00000        *
+      1   3.40659  0.13342  3.45717  2.80965      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+      2   0.14497  3.35727  2.78696  3.25677      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+      3   3.06546  2.58040  3.11450  0.18245      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+      4   3.40659  0.13342  3.45717  2.80965      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+      5   2.93142  3.56437  0.11975  3.46663      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+      6   0.14497  3.35727  2.78696  3.25677      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+      7   3.06546  2.58040  3.11450  0.18245      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+      8   3.40659  0.13342  3.45717  2.80965      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+      9   3.40659  0.13342  3.45717  2.80965      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     10   3.06546  2.58040  3.11450  0.18245     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     11   3.06546  2.58040  3.11450  0.18245     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     12   0.14497  3.35727  2.78696  3.25677     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     13   3.40659  0.13342  3.45717  2.80965     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     14   3.40659  0.13342  3.45717  2.80965     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     15   3.40659  0.13342  3.45717  2.80965     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     16   0.14497  3.35727  2.78696  3.25677     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     17   2.93142  3.56437  0.11975  3.46663     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     18   2.93142  3.56437  0.11975  3.46663     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     19   0.14497  3.35727  2.78696  3.25677     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     20   0.14497  3.35727  2.78696  3.25677     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     21   3.40659  0.13342  3.45717  2.80965     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     22   2.93142  3.56437  0.11975  3.46663     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     23   0.14497  3.35727  2.78696  3.25677     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     24   3.06546  2.58040  3.11450  0.18245     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     25   0.14497  3.35727  2.78696  3.25677     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     26   3.06546  2.58040  3.11450  0.18245     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     27   2.93142  3.56437  0.11975  3.46663     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     28   3.40659  0.13342  3.45717  2.80965     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     29   3.40659  0.13342  3.45717  2.80965     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     30   3.40659  0.13342  3.45717  2.80965     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     31   3.40659  0.13342  3.45717  2.80965     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     32   0.14497  3.35727  2.78696  3.25677     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     33   3.06546  2.58040  3.11450  0.18245     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     34   3.06546  2.58040  3.11450  0.18245     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     35   2.93142  3.56437  0.11975  3.46663     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     36   0.14497  3.35727  2.78696  3.25677     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     37   2.93142  3.56437  0.11975  3.46663     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     38   3.40659  0.13342  3.45717  2.80965     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     39   2.93142  3.56437  0.11975  3.46663     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     40   3.06546  2.58040  3.11450  0.18245     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     41   3.40659  0.13342  3.45717  2.80965     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     42   0.14497  3.35727  2.78696  3.25677     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     43   3.06546  2.58040  3.11450  0.18245     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     44   3.06546  2.58040  3.11450  0.18245     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     45   0.14497  3.35727  2.78696  3.25677     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01886  3.98000        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_sixteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:13:32 2012
+NSEQ  5
+EFFN  3.198242
+CKSUM 1838760749
+STATS LOCAL MSV       -7.9990  0.71931
+STATS LOCAL VITERBI   -7.7765  0.71931
+STATS LOCAL FORWARD   -4.3208  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55563  1.15040  1.38658  1.50280
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  0.00000        *
+      1   2.91894  3.54631  0.12180  3.44673      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      2   0.14739  3.33958  2.77542  3.23743      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      3   3.38618  0.13595  3.43760  2.79470      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      4   0.14739  3.33958  2.77542  3.23743      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      5   3.38618  0.13595  3.43760  2.79470      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      6   3.38618  0.13595  3.43760  2.79470      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      7   2.91894  3.54631  0.12180  3.44673      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      8   2.91894  3.54631  0.12180  3.44673      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      9   3.38618  0.13595  3.43760  2.79470      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     10   3.04773  2.56910  3.09744  0.18541     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     11   3.38618  0.13595  3.43760  2.79470     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     12   3.04773  2.56910  3.09744  0.18541     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     13   0.14739  3.33958  2.77542  3.23743     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     14   3.04773  2.56910  3.09744  0.18541     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     15   3.38618  0.13595  3.43760  2.79470     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     16   3.38618  0.13595  3.43760  2.79470     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     17   2.91894  3.54631  0.12180  3.44673     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     18   0.14739  3.33958  2.77542  3.23743     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     19   2.91894  3.54631  0.12180  3.44673     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     20   3.38618  0.13595  3.43760  2.79470     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     21   0.14739  3.33958  2.77542  3.23743     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     22   2.91894  3.54631  0.12180  3.44673     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     23   2.91894  3.54631  0.12180  3.44673     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     24   3.04773  2.56910  3.09744  0.18541     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     25   0.14739  3.33958  2.77542  3.23743     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     26   3.04773  2.56910  3.09744  0.18541     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     27   2.91894  3.54631  0.12180  3.44673     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     28   3.38618  0.13595  3.43760  2.79470     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     29   3.38618  0.13595  3.43760  2.79470     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     30   3.38618  0.13595  3.43760  2.79470     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     31   3.38618  0.13595  3.43760  2.79470     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     32   3.04773  2.56910  3.09744  0.18541     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     33   3.04773  2.56910  3.09744  0.18541     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     34   3.04773  2.56910  3.09744  0.18541     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     35   2.91894  3.54631  0.12180  3.44673     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     36   0.14739  3.33958  2.77542  3.23743     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     37   2.91894  3.54631  0.12180  3.44673     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     38   3.38618  0.13595  3.43760  2.79470     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     39   2.91894  3.54631  0.12180  3.44673     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     40   3.38618  0.13595  3.43760  2.79470     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     41   3.38618  0.13595  3.43760  2.79470     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     42   0.14739  3.33958  2.77542  3.23743     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     43   3.04773  2.56910  3.09744  0.18541     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     44   3.04773  2.56910  3.09744  0.18541     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     45   0.14739  3.33958  2.77542  3.23743     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01905  3.96996        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_tena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:12:32 2012
+NSEQ  4
+EFFN  3.269531
+CKSUM 1537044882
+STATS LOCAL MSV       -8.1683  0.71933
+STATS LOCAL VITERBI   -7.7449  0.71933
+STATS LOCAL FORWARD   -3.7123  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40984  1.19690  1.61770  1.36519
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  0.00000        *
+      1   3.41331  0.13259  3.46361  2.81457      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      2   0.14418  3.36310  2.79076  3.26314      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      3   3.07131  2.58413  3.12013  0.18149      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      4   3.41331  0.13259  3.46361  2.81457      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      5   2.93551  3.57031  0.11909  3.47317      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      6   0.14418  3.36310  2.79076  3.26314      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      7   2.93551  3.57031  0.11909  3.47317      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      8   3.41331  0.13259  3.46361  2.81457      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      9   3.07131  2.58413  3.12013  0.18149      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     10   3.07131  2.58413  3.12013  0.18149     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     11   3.07131  2.58413  3.12013  0.18149     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     12   3.07131  2.58413  3.12013  0.18149     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     13   3.41331  0.13259  3.46361  2.81457     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     14   3.41331  0.13259  3.46361  2.81457     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     15   3.41331  0.13259  3.46361  2.81457     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     16   0.14418  3.36310  2.79076  3.26314     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     17   0.14418  3.36310  2.79076  3.26314     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     18   2.93551  3.57031  0.11909  3.47317     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     19   3.41331  0.13259  3.46361  2.81457     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     20   0.14418  3.36310  2.79076  3.26314     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     21   3.41331  0.13259  3.46361  2.81457     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     22   2.93551  3.57031  0.11909  3.47317     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     23   0.14418  3.36310  2.79076  3.26314     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     24   3.07131  2.58413  3.12013  0.18149     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     25   0.14418  3.36310  2.79076  3.26314     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     26   3.07131  2.58413  3.12013  0.18149     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     27   2.93551  3.57031  0.11909  3.47317     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     28   3.41331  0.13259  3.46361  2.81457     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     29   3.41331  0.13259  3.46361  2.81457     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     30   3.41331  0.13259  3.46361  2.81457     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     31   3.41331  0.13259  3.46361  2.81457     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     32   0.14418  3.36310  2.79076  3.26314     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     33   3.07131  2.58413  3.12013  0.18149     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     34   3.07131  2.58413  3.12013  0.18149     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     35   2.93551  3.57031  0.11909  3.47317     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     36   0.14418  3.36310  2.79076  3.26314     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     37   2.93551  3.57031  0.11909  3.47317     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     38   3.41331  0.13259  3.46361  2.81457     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     39   2.93551  3.57031  0.11909  3.47317     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     40   3.07131  2.58413  3.12013  0.18149     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     41   3.41331  0.13259  3.46361  2.81457     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     42   0.14418  3.36310  2.79076  3.26314     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     43   3.07131  2.58413  3.12013  0.18149     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     44   3.07131  2.58413  3.12013  0.18149     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     45   0.14418  3.36310  2.79076  3.26314     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01880  3.98333        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_tenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:12:37 2012
+NSEQ  8
+EFFN  3.238281
+CKSUM 924032037
+STATS LOCAL MSV       -8.2590  0.71932
+STATS LOCAL VITERBI   -7.7692  0.71932
+STATS LOCAL FORWARD   -3.8306  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.48146  1.14497  1.53637  1.43003
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  0.00000        *
+      1   3.40150  0.13404  3.45229  2.80593      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      2   0.14557  3.35286  2.78409  3.25194      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      3   3.06103  2.57758  3.11024  0.18319      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      4   3.40150  0.13404  3.45229  2.80593      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      5   2.92831  3.55987  0.12026  3.46167      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      6   0.14557  3.35286  2.78409  3.25194      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      7   2.92831  3.55987  0.12026  3.46167      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      8   3.40150  0.13404  3.45229  2.80593      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      9   3.06103  2.57758  3.11024  0.18319      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     10   3.06103  2.57758  3.11024  0.18319     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     11   3.06103  2.57758  3.11024  0.18319     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     12   2.92831  3.55987  0.12026  3.46167     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     13   3.40150  0.13404  3.45229  2.80593     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     14   3.40150  0.13404  3.45229  2.80593     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     15   3.40150  0.13404  3.45229  2.80593     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     16   0.14557  3.35286  2.78409  3.25194     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     17   0.14557  3.35286  2.78409  3.25194     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     18   2.92831  3.55987  0.12026  3.46167     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     19   3.40150  0.13404  3.45229  2.80593     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     20   0.14557  3.35286  2.78409  3.25194     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     21   3.40150  0.13404  3.45229  2.80593     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     22   2.92831  3.55987  0.12026  3.46167     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     23   0.14557  3.35286  2.78409  3.25194     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     24   3.06103  2.57758  3.11024  0.18319     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     25   0.14557  3.35286  2.78409  3.25194     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     26   3.06103  2.57758  3.11024  0.18319     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     27   2.92831  3.55987  0.12026  3.46167     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     28   3.40150  0.13404  3.45229  2.80593     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     29   3.40150  0.13404  3.45229  2.80593     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     30   3.40150  0.13404  3.45229  2.80593     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     31   3.40150  0.13404  3.45229  2.80593     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     32   0.14557  3.35286  2.78409  3.25194     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     33   3.06103  2.57758  3.11024  0.18319     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     34   3.06103  2.57758  3.11024  0.18319     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     35   2.92831  3.55987  0.12026  3.46167     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     36   0.14557  3.35286  2.78409  3.25194     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     37   2.92831  3.55987  0.12026  3.46167     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     38   3.40150  0.13404  3.45229  2.80593     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     39   2.92831  3.55987  0.12026  3.46167     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     40   3.06103  2.57758  3.11024  0.18319     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     41   3.40150  0.13404  3.45229  2.80593     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     42   3.40150  0.13404  3.45229  2.80593     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     43   3.06103  2.57758  3.11024  0.18319     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     44   3.06103  2.57758  3.11024  0.18319     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     45   0.14557  3.35286  2.78409  3.25194     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01891  3.97749        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_thirteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:13:07 2012
+NSEQ  15
+EFFN  3.204346
+CKSUM 845325246
+STATS LOCAL MSV       -8.0282  0.71931
+STATS LOCAL VITERBI   -7.6691  0.71931
+STATS LOCAL FORWARD   -4.1195  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47875  1.20479  1.38631  1.50361
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  0.00000        *
+      1   3.38853  0.13565  3.43985  2.79643      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+      2   0.14711  3.34162  2.77675  3.23965      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+      3   3.04977  2.57040  3.09940  0.18507      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+      4   3.38853  0.13565  3.43985  2.79643      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+      5   2.92038  3.54839  0.12156  3.44902      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+      6   0.14711  3.34162  2.77675  3.23965      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+      7   2.92038  3.54839  0.12156  3.44902      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+      8   3.38853  0.13565  3.43985  2.79643      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+      9   3.04977  2.57040  3.09940  0.18507      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     10   3.04977  2.57040  3.09940  0.18507     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     11   3.04977  2.57040  3.09940  0.18507     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     12   2.92038  3.54839  0.12156  3.44902     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     13   3.38853  0.13565  3.43985  2.79643     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     14   3.38853  0.13565  3.43985  2.79643     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     15   3.38853  0.13565  3.43985  2.79643     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     16   0.14711  3.34162  2.77675  3.23965     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     17   0.14711  3.34162  2.77675  3.23965     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     18   2.92038  3.54839  0.12156  3.44902     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     19   3.38853  0.13565  3.43985  2.79643     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     20   0.14711  3.34162  2.77675  3.23965     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     21   3.38853  0.13565  3.43985  2.79643     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     22   2.92038  3.54839  0.12156  3.44902     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     23   0.14711  3.34162  2.77675  3.23965     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     24   3.04977  2.57040  3.09940  0.18507     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     25   0.14711  3.34162  2.77675  3.23965     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     26   3.38853  0.13565  3.43985  2.79643     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     27   2.92038  3.54839  0.12156  3.44902     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     28   3.38853  0.13565  3.43985  2.79643     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     29   2.92038  3.54839  0.12156  3.44902     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     30   3.04977  2.57040  3.09940  0.18507     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     31   3.04977  2.57040  3.09940  0.18507     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     32   2.92038  3.54839  0.12156  3.44902     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     33   0.14711  3.34162  2.77675  3.23965     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     34   3.04977  2.57040  3.09940  0.18507     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     35   3.38853  0.13565  3.43985  2.79643     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     36   0.14711  3.34162  2.77675  3.23965     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     37   3.38853  0.13565  3.43985  2.79643     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     38   3.38853  0.13565  3.43985  2.79643     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     39   2.92038  3.54839  0.12156  3.44902     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     40   3.38853  0.13565  3.43985  2.79643     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     41   2.92038  3.54839  0.12156  3.44902     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     42   2.92038  3.54839  0.12156  3.44902     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     43   3.04977  2.57040  3.09940  0.18507     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     44   3.04977  2.57040  3.09940  0.18507     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     45   0.14711  3.34162  2.77675  3.23965     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01903  3.97111        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_thirty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:16:07 2012
+NSEQ  25
+EFFN  3.347778
+CKSUM 3526474026
+STATS LOCAL MSV       -8.0290  0.71932
+STATS LOCAL VITERBI   -7.6992  0.71932
+STATS LOCAL FORWARD   -3.9563  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.61379  1.45294  1.21414  1.30926
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  0.00000        *
+      1   2.95310  3.59587  0.11628  3.50138      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+      2   3.44233  0.12911  3.49139  2.83570      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+      3   0.14084  3.38826  2.80712  3.29069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+      4   3.44233  0.12911  3.49139  2.83570      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+      5   3.44233  0.12911  3.49139  2.83570      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+      6   3.44233  0.12911  3.49139  2.83570      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+      7   3.09669  2.60028  3.14454  0.17738      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+      8   3.44233  0.12911  3.49139  2.83570      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+      9   3.09669  2.60028  3.14454  0.17738      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     10   2.95310  3.59587  0.11628  3.50138     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     11   2.95310  3.59587  0.11628  3.50138     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     12   3.09669  2.60028  3.14454  0.17738     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     13   0.14084  3.38826  2.80712  3.29069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     14   3.09669  2.60028  3.14454  0.17738     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     15   3.09669  2.60028  3.14454  0.17738     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     16   3.44233  0.12911  3.49139  2.83570     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     17   3.44233  0.12911  3.49139  2.83570     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     18   2.95310  3.59587  0.11628  3.50138     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     19   2.95310  3.59587  0.11628  3.50138     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     20   0.14084  3.38826  2.80712  3.29069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     21   2.95310  3.59587  0.11628  3.50138     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     22   2.95310  3.59587  0.11628  3.50138     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     23   2.95310  3.59587  0.11628  3.50138     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     24   3.09669  2.60028  3.14454  0.17738     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     25   0.14084  3.38826  2.80712  3.29069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     26   3.09669  2.60028  3.14454  0.17738     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     27   2.95310  3.59587  0.11628  3.50138     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     28   3.44233  0.12911  3.49139  2.83570     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     29   3.44233  0.12911  3.49139  2.83570     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     30   3.44233  0.12911  3.49139  2.83570     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     31   2.95310  3.59587  0.11628  3.50138     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     32   2.95310  3.59587  0.11628  3.50138     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     33   3.09669  2.60028  3.14454  0.17738     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     34   3.09669  2.60028  3.14454  0.17738     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     35   2.95310  3.59587  0.11628  3.50138     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     36   0.14084  3.38826  2.80712  3.29069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     37   2.95310  3.59587  0.11628  3.50138     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     38   3.09669  2.60028  3.14454  0.17738     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     39   0.14084  3.38826  2.80712  3.29069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     40   3.09669  2.60028  3.14454  0.17738     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     41   3.09669  2.60028  3.14454  0.17738     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     42   0.14084  3.38826  2.80712  3.29069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     43   3.09669  2.60028  3.14454  0.17738     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     44   1.40241  2.68354  0.49922  2.54249     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01598  4.01598  1.46634  0.26236  1.09861  0.40547
+     45   0.14084  3.38826  2.80712  3.29069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01853  3.99779        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_thirtyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:17:18 2012
+NSEQ  32
+EFFN  3.394531
+CKSUM 2669063487
+STATS LOCAL MSV       -7.3665  0.71932
+STATS LOCAL VITERBI   -7.8105  0.71932
+STATS LOCAL FORWARD   -4.2491  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54470  1.47761  1.25273  1.29932
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  0.00000        *
+      1   2.96332  3.61077  0.11467  3.51784      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+      2   3.45928  0.12713  3.50762  2.84801      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+      3   0.13893  3.40299  2.81667  3.30682      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+      4   3.45928  0.12713  3.50762  2.84801      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+      5   3.45928  0.12713  3.50762  2.84801      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+      6   3.11161  2.60976  3.15889  0.17501      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+      7   3.11161  2.60976  3.15889  0.17501      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+      8   3.45928  0.12713  3.50762  2.84801      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+      9   3.45928  0.12713  3.50762  2.84801      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     10   0.13893  3.40299  2.81667  3.30682     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     11   2.96332  3.61077  0.11467  3.51784     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     12   3.11161  2.60976  3.15889  0.17501     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     13   0.13893  3.40299  2.81667  3.30682     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     14   2.60089  0.48729  2.67136  1.41739     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     15   3.11161  2.60976  3.15889  0.17501     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     16   3.45928  0.12713  3.50762  2.84801     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     17   3.11161  2.60976  3.15889  0.17501     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     18   2.96332  3.61077  0.11467  3.51784     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     19   2.96332  3.61077  0.11467  3.51784     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     20   0.13893  3.40299  2.81667  3.30682     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     21   2.50443  3.37772  0.16702  3.27104     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     22   2.96332  3.61077  0.11467  3.51784     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     23   2.96332  3.61077  0.11467  3.51784     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     24   3.11161  2.60976  3.15889  0.17501     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     25   0.13893  3.40299  2.81667  3.30682     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     26   3.00916  2.36348  3.06014  0.21110     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     27   2.96332  3.61077  0.11467  3.51784     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     28   3.45928  0.12713  3.50762  2.84801     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     29   3.45928  0.12713  3.50762  2.84801     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     30   3.45928  0.12713  3.50762  2.84801     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     31   2.96332  3.61077  0.11467  3.51784     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     32   2.96332  3.61077  0.11467  3.51784     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     33   3.11161  2.60976  3.15889  0.17501     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     34   3.11161  2.60976  3.15889  0.17501     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     35   2.96332  3.61077  0.11467  3.51784     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     36   0.13893  3.40299  2.81667  3.30682     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     37   2.96332  3.61077  0.11467  3.51784     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     38   3.11161  2.60976  3.15889  0.17501     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     39   0.13893  3.40299  2.81667  3.30682     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     40   3.11161  2.60976  3.15889  0.17501     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     41   3.11161  2.60976  3.15889  0.17501     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     42   0.13893  3.40299  2.81667  3.30682     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     43   3.11161  2.60976  3.15889  0.17501     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     44   2.96332  3.61077  0.11467  3.51784     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     45   0.13893  3.40299  2.81667  3.30682     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01837  4.00634        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_thirtyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:16:49 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1660645666
+STATS LOCAL MSV       -7.4478  0.72784
+STATS LOCAL VITERBI   -8.1116  0.72784
+STATS LOCAL FORWARD   -3.4035  0.72784
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73811  1.39517  1.16676  1.32810
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_thirtyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:16:41 2012
+NSEQ  4
+EFFN  3.222656
+CKSUM 1259449570
+STATS LOCAL MSV       -7.9923  0.71933
+STATS LOCAL VITERBI   -7.7382  0.71933
+STATS LOCAL FORWARD   -3.9022  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71972  1.45669  1.14122  1.31509
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  0.00000        *
+      1   2.92468  3.55461  0.12085  3.45586      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      2   3.39555  0.13478  3.44658  2.80157      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      3   0.14627  3.34770  2.78072  3.24630      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      4   3.39555  0.13478  3.44658  2.80157      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      5   3.39555  0.13478  3.44658  2.80157      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      6   3.39555  0.13478  3.44658  2.80157      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      7   3.05586  2.57429  3.10526  0.18405      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      8   3.39555  0.13478  3.44658  2.80157      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      9   3.05586  2.57429  3.10526  0.18405      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     10   2.92468  3.55461  0.12085  3.45586     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     11   2.92468  3.55461  0.12085  3.45586     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     12   3.05586  2.57429  3.10526  0.18405     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     13   0.14627  3.34770  2.78072  3.24630     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     14   3.05586  2.57429  3.10526  0.18405     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     15   3.05586  2.57429  3.10526  0.18405     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     16   3.39555  0.13478  3.44658  2.80157     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     17   3.39555  0.13478  3.44658  2.80157     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     18   2.92468  3.55461  0.12085  3.45586     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     19   2.92468  3.55461  0.12085  3.45586     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     20   0.14627  3.34770  2.78072  3.24630     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     21   2.92468  3.55461  0.12085  3.45586     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     22   2.92468  3.55461  0.12085  3.45586     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     23   2.92468  3.55461  0.12085  3.45586     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     24   3.05586  2.57429  3.10526  0.18405     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     25   0.14627  3.34770  2.78072  3.24630     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     26   3.05586  2.57429  3.10526  0.18405     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     27   2.92468  3.55461  0.12085  3.45586     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     28   3.39555  0.13478  3.44658  2.80157     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     29   3.39555  0.13478  3.44658  2.80157     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     30   3.39555  0.13478  3.44658  2.80157     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     31   2.92468  3.55461  0.12085  3.45586     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     32   2.92468  3.55461  0.12085  3.45586     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     33   3.05586  2.57429  3.10526  0.18405     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     34   3.05586  2.57429  3.10526  0.18405     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     35   2.92468  3.55461  0.12085  3.45586     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     36   0.14627  3.34770  2.78072  3.24630     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     37   2.92468  3.55461  0.12085  3.45586     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     38   0.14627  3.34770  2.78072  3.24630     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     39   2.92468  3.55461  0.12085  3.45586     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     40   3.05586  2.57429  3.10526  0.18405     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     41   3.05586  2.57429  3.10526  0.18405     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     42   3.05586  2.57429  3.10526  0.18405     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     43   3.05586  2.57429  3.10526  0.18405     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     44   2.92468  3.55461  0.12085  3.45586     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     45   0.14627  3.34770  2.78072  3.24630     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01897  3.97456        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_thirtynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:17:27 2012
+NSEQ  19
+EFFN  3.279541
+CKSUM 3111235166
+STATS LOCAL MSV       -8.0224  0.71934
+STATS LOCAL VITERBI   -7.8055  0.71934
+STATS LOCAL FORWARD   -4.1423  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62916  1.38347  1.26067  1.31032
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  0.00000        *
+      1   2.93780  3.57362  0.11872  3.47683      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+      2   3.41707  0.13214  3.46721  2.81731      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+      3   0.14375  3.36635  2.79288  3.26670      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+      4   3.41707  0.13214  3.46721  2.81731      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+      5   3.41707  0.13214  3.46721  2.81731      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+      6   3.07459  2.58622  3.12328  0.18095      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+      7   3.07459  2.58622  3.12328  0.18095      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+      8   3.41707  0.13214  3.46721  2.81731      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+      9   3.41707  0.13214  3.46721  2.81731      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     10   0.14375  3.36635  2.79288  3.26670     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     11   2.93780  3.57362  0.11872  3.47683     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     12   3.07459  2.58622  3.12328  0.18095     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     13   3.41707  0.13214  3.46721  2.81731     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     14   3.41707  0.13214  3.46721  2.81731     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     15   3.07459  2.58622  3.12328  0.18095     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     16   3.41707  0.13214  3.46721  2.81731     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     17   3.07459  2.58622  3.12328  0.18095     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     18   2.93780  3.57362  0.11872  3.47683     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     19   2.93780  3.57362  0.11872  3.47683     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     20   0.14375  3.36635  2.79288  3.26670     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     21   2.26575  3.20451  0.21069  3.08687     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     22   2.93780  3.57362  0.11872  3.47683     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     23   2.93780  3.57362  0.11872  3.47683     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     24   3.07459  2.58622  3.12328  0.18095     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     25   0.14375  3.36635  2.79288  3.26670     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     26   3.07459  2.58622  3.12328  0.18095     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     27   2.93780  3.57362  0.11872  3.47683     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     28   3.41707  0.13214  3.46721  2.81731     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     29   3.41707  0.13214  3.46721  2.81731     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     30   3.41707  0.13214  3.46721  2.81731     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     31   2.93780  3.57362  0.11872  3.47683     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     32   2.93780  3.57362  0.11872  3.47683     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     33   3.07459  2.58622  3.12328  0.18095     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     34   3.07459  2.58622  3.12328  0.18095     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     35   2.93780  3.57362  0.11872  3.47683     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     36   0.14375  3.36635  2.79288  3.26670     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     37   2.93780  3.57362  0.11872  3.47683     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     38   3.07459  2.58622  3.12328  0.18095     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     39   0.14375  3.36635  2.79288  3.26670     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     40   3.07459  2.58622  3.12328  0.18095     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     41   3.07459  2.58622  3.12328  0.18095     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     42   0.14375  3.36635  2.79288  3.26670     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     43   3.07459  2.58622  3.12328  0.18095     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     44   2.93780  3.57362  0.11872  3.47683     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     45   0.14375  3.36635  2.79288  3.26670     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01876  3.98519        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_thirtyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:16:14 2012
+NSEQ  18
+EFFN  3.414551
+CKSUM 3741154468
+STATS LOCAL MSV       -7.2657  0.71931
+STATS LOCAL VITERBI   -7.6184  0.71931
+STATS LOCAL FORWARD   -4.2095  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.51580  1.52525  1.28730  1.24902
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  0.00000        *
+      1   2.96763  3.61706  0.11400  3.52480      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+      2   3.46646  0.12630  3.51449  2.85321      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+      3   0.13813  3.40923  2.82071  3.31365      3 - -
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+          1.38629  1.38629  1.38629  1.38629
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+     44   0.85781  2.53043  0.90573  2.38555     44 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   0.13813  3.40923  2.82071  3.31365     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01830  4.00998        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_thirtyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:17:06 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1321984136
+STATS LOCAL MSV       -7.4429  0.72764
+STATS LOCAL VITERBI   -8.5008  0.72764
+STATS LOCAL FORWARD   -3.4219  0.72764
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73928  1.39858  1.11995  1.38188
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
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+      2   2.81865  0.23582  2.88868  2.35662      2 - -
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+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_thirtysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:16:59 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 364489921
+STATS LOCAL MSV       -7.3526  0.72796
+STATS LOCAL VITERBI   -8.1188  0.72796
+STATS LOCAL FORWARD   -3.4089  0.72796
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73627  1.45221  1.16577  1.27982
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_thirtythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:16:31 2012
+NSEQ  69
+EFFN  3.213318
+CKSUM 2306375096
+STATS LOCAL MSV       -8.0120  0.71932
+STATS LOCAL VITERBI   -7.5875  0.71932
+STATS LOCAL FORWARD   -3.9698  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63354  1.38837  1.19565  1.37525
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  0.00000        *
+      1   2.92249  3.55144  0.12121  3.45238      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+      2   3.39197  0.13522  3.44315  2.79895      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+      3   2.92249  3.55144  0.12121  3.45238      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+      4   3.39197  0.13522  3.44315  2.79895      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+      5   3.39197  0.13522  3.44315  2.79895      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+      6   3.39197  0.13522  3.44315  2.79895      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+      7   3.05276  2.57231  3.10227  0.18457      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+      8   3.39197  0.13522  3.44315  2.79895      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+      9   3.05276  2.57231  3.10227  0.18457      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     10   2.92249  3.55144  0.12121  3.45238     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     11   2.92249  3.55144  0.12121  3.45238     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     12   3.05276  2.57231  3.10227  0.18457     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     13   0.14670  3.34460  2.77870  3.24291     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     14   3.05276  2.57231  3.10227  0.18457     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     15   3.05276  2.57231  3.10227  0.18457     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     16   3.39197  0.13522  3.44315  2.79895     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     17   3.39197  0.13522  3.44315  2.79895     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     18   2.92249  3.55144  0.12121  3.45238     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     19   2.92249  3.55144  0.12121  3.45238     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     20   0.14670  3.34460  2.77870  3.24291     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     21   2.92249  3.55144  0.12121  3.45238     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     22   0.14670  3.34460  2.77870  3.24291     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     23   2.92249  3.55144  0.12121  3.45238     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     24   3.39197  0.13522  3.44315  2.79895     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     25   0.14670  3.34460  2.77870  3.24291     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     26   3.05276  2.57231  3.10227  0.18457     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     27   2.92249  3.55144  0.12121  3.45238     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     28   3.39197  0.13522  3.44315  2.79895     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     29   3.39197  0.13522  3.44315  2.79895     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     30   3.39197  0.13522  3.44315  2.79895     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     31   2.92249  3.55144  0.12121  3.45238     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     32   2.92249  3.55144  0.12121  3.45238     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     33   3.05276  2.57231  3.10227  0.18457     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     34   3.05276  2.57231  3.10227  0.18457     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     35   2.92249  3.55144  0.12121  3.45238     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     36   0.14670  3.34460  2.77870  3.24291     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     37   2.92249  3.55144  0.12121  3.45238     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     38   3.05276  2.57231  3.10227  0.18457     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     39   0.14670  3.34460  2.77870  3.24291     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     40   3.05276  2.57231  3.10227  0.18457     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     41   3.05276  2.57231  3.10227  0.18457     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     42   0.14670  3.34460  2.77870  3.24291     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     43   3.05276  2.57231  3.10227  0.18457     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     44   2.92249  3.55144  0.12121  3.45238     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99145  3.99145  1.46634  0.26236  1.09861  0.40547
+     45   0.14670  3.34460  2.77870  3.24291     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01900  3.97280        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_thirtytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:16:23 2012
+NSEQ  26
+EFFN  3.348389
+CKSUM 1469927080
+STATS LOCAL MSV       -7.9913  0.71933
+STATS LOCAL VITERBI   -7.6268  0.71933
+STATS LOCAL FORWARD   -4.0718  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47178  1.60222  1.31120  1.20551
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  0.00000        *
+      1   2.95324  3.59606  0.11625  3.50160      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+      2   3.44255  0.12909  3.49161  2.83587      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+      3   0.14082  3.38846  2.80725  3.29090      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+      4   3.44255  0.12909  3.49161  2.83587      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+      5   3.44255  0.12909  3.49161  2.83587      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+      6   3.09689  2.60041  3.14473  0.17735      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+      7   3.09689  2.60041  3.14473  0.17735      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+      8   3.09689  2.60041  3.14473  0.17735      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+      9   3.09689  2.60041  3.14473  0.17735      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     10   2.95324  3.59606  0.11625  3.50160     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     11   2.95324  3.59606  0.11625  3.50160     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     12   3.09689  2.60041  3.14473  0.17735     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     13   0.14082  3.38846  2.80725  3.29090     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     14   3.09689  2.60041  3.14473  0.17735     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     15   3.09689  2.60041  3.14473  0.17735     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     16   3.44255  0.12909  3.49161  2.83587     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     17   3.44255  0.12909  3.49161  2.83587     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     18   2.95324  3.59606  0.11625  3.50160     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     19   0.14082  3.38846  2.80725  3.29090     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     20   0.14082  3.38846  2.80725  3.29090     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     21   0.14082  3.38846  2.80725  3.29090     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     22   2.95324  3.59606  0.11625  3.50160     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     23   2.95324  3.59606  0.11625  3.50160     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     24   3.09689  2.60041  3.14473  0.17735     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     25   0.14082  3.38846  2.80725  3.29090     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     26   2.81926  1.98984  2.87734  0.29122     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     27   2.95324  3.59606  0.11625  3.50160     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     28   3.44255  0.12909  3.49161  2.83587     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     29   3.44255  0.12909  3.49161  2.83587     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     30   3.44255  0.12909  3.49161  2.83587     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     31   2.95324  3.59606  0.11625  3.50160     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     32   2.95324  3.59606  0.11625  3.50160     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     33   3.09689  2.60041  3.14473  0.17735     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     34   3.09689  2.60041  3.14473  0.17735     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     35   2.95324  3.59606  0.11625  3.50160     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     36   0.14082  3.38846  2.80725  3.29090     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     37   2.95324  3.59606  0.11625  3.50160     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     38   3.09689  2.60041  3.14473  0.17735     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     39   0.14082  3.38846  2.80725  3.29090     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     40   3.09689  2.60041  3.14473  0.17735     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     41   3.09689  2.60041  3.14473  0.17735     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     42   0.14082  3.38846  2.80725  3.29090     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     43   3.09689  2.60041  3.14473  0.17735     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     44   2.95324  3.59606  0.11625  3.50160     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01609  4.01609  1.46634  0.26236  1.09861  0.40547
+     45   0.14082  3.38846  2.80725  3.29090     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01852  3.99790        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:11:27 2012
+NSEQ  636
+EFFN  3.265594
+CKSUM 2208061849
+STATS LOCAL MSV       -8.2045  0.71934
+STATS LOCAL VITERBI   -7.6650  0.71934
+STATS LOCAL FORWARD   -4.0510  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82584  1.09130  1.32417  1.43922
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  0.00000        *
+      1   0.14436  3.36181  2.78992  3.26173      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+      2   3.41183  0.13277  3.46219  2.81348      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+      3   3.41183  0.13277  3.46219  2.81348      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+      4   2.93461  3.56900  0.11923  3.47173      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+      5   3.35814  0.14439  3.40995  2.70893      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+      6   2.93461  3.56900  0.11923  3.47173      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+      7   3.41183  0.13277  3.46219  2.81348      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+      8   3.41183  0.13277  3.46219  2.81348      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+      9   3.30907  0.14855  3.26307  2.76113      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     10   3.07002  2.58331  3.11889  0.18170     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     11   0.14436  3.36181  2.78992  3.26173     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     12   0.14436  3.36181  2.78992  3.26173     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     13   2.62631  1.89691  2.74803  0.33748     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     14   3.41183  0.13277  3.46219  2.81348     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     15   3.35255  0.14564  3.40452  2.69844     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     16   2.93461  3.56900  0.11923  3.47173     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     17   2.93461  3.56900  0.11923  3.47173     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     18   3.41183  0.13277  3.46219  2.81348     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     19   3.07002  2.58331  3.11889  0.18170     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     20   2.93461  3.56900  0.11923  3.47173     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     21   3.33581  0.14941  3.38826  2.66738     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     22   2.93461  3.56900  0.11923  3.47173     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     23   2.93461  3.56900  0.11923  3.47173     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     24   3.07002  2.58331  3.11889  0.18170     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     25   0.14436  3.36181  2.78992  3.26173     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     26   3.07002  2.58331  3.11889  0.18170     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     27   2.93461  3.56900  0.11923  3.47173     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     28   3.41183  0.13277  3.46219  2.81348     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     29   3.41183  0.13277  3.46219  2.81348     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     30   3.41183  0.13277  3.46219  2.81348     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     31   3.41183  0.13277  3.46219  2.81348     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     32   3.07002  2.58331  3.11889  0.18170     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     33   3.07002  2.58331  3.11889  0.18170     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     34   3.07002  2.58331  3.11889  0.18170     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     35   2.93461  3.56900  0.11923  3.47173     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     36   0.14436  3.36181  2.78992  3.26173     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     37   2.93461  3.56900  0.11923  3.47173     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     38   3.41183  0.13277  3.46219  2.81348     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     39   2.93461  3.56900  0.11923  3.47173     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     40   3.07002  2.58331  3.11889  0.18170     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     41   3.41183  0.13277  3.46219  2.81348     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     42   0.14436  3.36181  2.78992  3.26173     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     43   3.07002  2.58331  3.11889  0.18170     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     44   3.07002  2.58331  3.11889  0.18170     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00106  4.00106  1.46634  0.26236  1.09861  0.40547
+     45   2.93461  3.56900  0.11923  3.47173     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01881  3.98259        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_twelve_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:12:56 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 636756772
+STATS LOCAL MSV       -7.4971  0.72788
+STATS LOCAL VITERBI   -8.4794  0.72788
+STATS LOCAL FORWARD   -3.2172  0.72788
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34726  1.19087  1.50491  1.54153
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_twenty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:14:20 2012
+NSEQ  53
+EFFN  3.251038
+CKSUM 1432045110
+STATS LOCAL MSV       -8.1636  0.71933
+STATS LOCAL VITERBI   -7.6438  0.71933
+STATS LOCAL FORWARD   -4.2586  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63423  1.38479  1.25605  1.31027
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  0.00000        *
+      1   3.06524  2.58026  3.11428  0.18249      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+      2   3.06524  2.58026  3.11428  0.18249      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+      3   2.93127  3.56415  0.11978  3.46638      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+      4   3.40634  0.13345  3.45692  2.80947      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+      5   0.14500  3.35705  2.78682  3.25652      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+      6   3.40634  0.13345  3.45692  2.80947      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+      7   3.40634  0.13345  3.45692  2.80947      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+      8   2.93127  3.56415  0.11978  3.46638      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+      9   3.40634  0.13345  3.45692  2.80947      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     10   3.40634  0.13345  3.45692  2.80947     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     11   3.40634  0.13345  3.45692  2.80947     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     12   3.06524  2.58026  3.11428  0.18249     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     13   3.06524  2.58026  3.11428  0.18249     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     14   3.06524  2.58026  3.11428  0.18249     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     15   3.06524  2.58026  3.11428  0.18249     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     16   2.93127  3.56415  0.11978  3.46638     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     17   2.93127  3.56415  0.11978  3.46638     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     18   2.93127  3.56415  0.11978  3.46638     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     19   0.14500  3.35705  2.78682  3.25652     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     20   2.93127  3.56415  0.11978  3.46638     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     21   3.06524  2.58026  3.11428  0.18249     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     22   2.93127  3.56415  0.11978  3.46638     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     23   2.93127  3.56415  0.11978  3.46638     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     24   3.06524  2.58026  3.11428  0.18249     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     25   0.14500  3.35705  2.78682  3.25652     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     26   3.40634  0.13345  3.45692  2.80947     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     27   2.93127  3.56415  0.11978  3.46638     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     28   3.40634  0.13345  3.45692  2.80947     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     29   3.40634  0.13345  3.45692  2.80947     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     30   3.40634  0.13345  3.45692  2.80947     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     31   2.93127  3.56415  0.11978  3.46638     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     32   0.14500  3.35705  2.78682  3.25652     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     33   3.06524  2.58026  3.11428  0.18249     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     34   3.06524  2.58026  3.11428  0.18249     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     35   2.93127  3.56415  0.11978  3.46638     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     36   0.14500  3.35705  2.78682  3.25652     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     37   2.93127  3.56415  0.11978  3.46638     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     38   3.06524  2.58026  3.11428  0.18249     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     39   2.93127  3.56415  0.11978  3.46638     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     40   2.99219  2.40457  3.04365  0.20843     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     41   3.40634  0.13345  3.45692  2.80947     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     42   0.14500  3.35705  2.78682  3.25652     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     43   3.06524  2.58026  3.11428  0.18249     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     44   0.14500  3.35705  2.78682  3.25652     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99839  3.99839  1.46634  0.26236  1.09861  0.40547
+     45   0.14500  3.35705  2.78682  3.25652     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01886  3.97988        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_twentyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:15:40 2012
+NSEQ  21
+EFFN  3.237671
+CKSUM 2025506789
+STATS LOCAL MSV       -7.9023  0.71932
+STATS LOCAL VITERBI   -7.6088  0.71932
+STATS LOCAL FORWARD   -4.2034  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63136  1.45616  1.19549  1.31434
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  0.00000        *
+      1   2.92817  3.55967  0.12028  3.46144      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+      2   3.40127  0.13407  3.45207  2.80576      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+      3   0.14560  3.35266  2.78396  3.25172      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+      4   3.40127  0.13407  3.45207  2.80576      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+      5   3.40127  0.13407  3.45207  2.80576      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+      6   3.40127  0.13407  3.45207  2.80576      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+      7   3.06083  2.57745  3.11004  0.18322      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+      8   3.40127  0.13407  3.45207  2.80576      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+      9   3.06083  2.57745  3.11004  0.18322      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     10   0.14560  3.35266  2.78396  3.25172     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     11   2.92817  3.55967  0.12028  3.46144     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     12   3.06083  2.57745  3.11004  0.18322     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     13   0.14560  3.35266  2.78396  3.25172     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     14   3.06083  2.57745  3.11004  0.18322     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     15   3.06083  2.57745  3.11004  0.18322     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     16   3.40127  0.13407  3.45207  2.80576     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     17   3.06083  2.57745  3.11004  0.18322     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     18   2.92817  3.55967  0.12028  3.46144     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     19   2.92817  3.55967  0.12028  3.46144     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     20   0.14560  3.35266  2.78396  3.25172     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     21   2.92817  3.55967  0.12028  3.46144     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     22   2.92817  3.55967  0.12028  3.46144     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     23   2.92817  3.55967  0.12028  3.46144     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     24   3.06083  2.57745  3.11004  0.18322     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     25   0.14560  3.35266  2.78396  3.25172     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     26   3.06083  2.57745  3.11004  0.18322     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     27   2.92817  3.55967  0.12028  3.46144     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     28   3.40127  0.13407  3.45207  2.80576     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     29   3.40127  0.13407  3.45207  2.80576     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     30   3.40127  0.13407  3.45207  2.80576     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     31   2.92817  3.55967  0.12028  3.46144     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     32   2.92817  3.55967  0.12028  3.46144     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     33   3.06083  2.57745  3.11004  0.18322     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     34   3.06083  2.57745  3.11004  0.18322     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     35   2.92817  3.55967  0.12028  3.46144     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     36   0.14560  3.35266  2.78396  3.25172     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     37   2.92817  3.55967  0.12028  3.46144     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     38   3.06083  2.57745  3.11004  0.18322     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     39   2.92817  3.55967  0.12028  3.46144     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     40   3.06083  2.57745  3.11004  0.18322     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     41   3.40127  0.13407  3.45207  2.80576     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     42   0.14560  3.35266  2.78396  3.25172     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     43   3.06083  2.57745  3.11004  0.18322     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     44   2.92817  3.55967  0.12028  3.46144     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99594  3.99594  1.46634  0.26236  1.09861  0.40547
+     45   0.14560  3.35266  2.78396  3.25172     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01891  3.97737        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_twentyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:15:06 2012
+NSEQ  4
+EFFN  3.214844
+CKSUM 2866287227
+STATS LOCAL MSV       -7.9504  0.71933
+STATS LOCAL VITERBI   -7.7053  0.71933
+STATS LOCAL FORWARD   -3.9958  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55658  1.20087  1.38656  1.43432
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  0.00000        *
+      1   3.39256  0.13515  3.44371  2.79938      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      2   3.39256  0.13515  3.44371  2.79938      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      3   2.92285  3.55196  0.12115  3.45295      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      4   2.92285  3.55196  0.12115  3.45295      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      5   0.14663  3.34511  2.77903  3.24347      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      6   3.39256  0.13515  3.44371  2.79938      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      7   2.92285  3.55196  0.12115  3.45295      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      8   0.14663  3.34511  2.77903  3.24347      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      9   3.39256  0.13515  3.44371  2.79938      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     10   0.14663  3.34511  2.77903  3.24347     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     11   3.39256  0.13515  3.44371  2.79938     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     12   3.39256  0.13515  3.44371  2.79938     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     13   3.39256  0.13515  3.44371  2.79938     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     14   3.39256  0.13515  3.44371  2.79938     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     15   3.39256  0.13515  3.44371  2.79938     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     16   2.92285  3.55196  0.12115  3.45295     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     17   3.05326  2.57263  3.10276  0.18448     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     18   2.92285  3.55196  0.12115  3.45295     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     19   2.92285  3.55196  0.12115  3.45295     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     20   0.14663  3.34511  2.77903  3.24347     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     21   3.05326  2.57263  3.10276  0.18448     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     22   0.14663  3.34511  2.77903  3.24347     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     23   2.92285  3.55196  0.12115  3.45295     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     24   3.05326  2.57263  3.10276  0.18448     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     25   0.14663  3.34511  2.77903  3.24347     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     26   3.05326  2.57263  3.10276  0.18448     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     27   2.92285  3.55196  0.12115  3.45295     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     28   3.39256  0.13515  3.44371  2.79938     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     29   3.39256  0.13515  3.44371  2.79938     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     30   3.39256  0.13515  3.44371  2.79938     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     31   3.39256  0.13515  3.44371  2.79938     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     32   0.14663  3.34511  2.77903  3.24347     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     33   3.05326  2.57263  3.10276  0.18448     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     34   3.05326  2.57263  3.10276  0.18448     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     35   2.92285  3.55196  0.12115  3.45295     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     36   0.14663  3.34511  2.77903  3.24347     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     37   2.92285  3.55196  0.12115  3.45295     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     38   3.39256  0.13515  3.44371  2.79938     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     39   2.92285  3.55196  0.12115  3.45295     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     40   3.05326  2.57263  3.10276  0.18448     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     41   3.05326  2.57263  3.10276  0.18448     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     42   0.14663  3.34511  2.77903  3.24347     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     43   3.05326  2.57263  3.10276  0.18448     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     44   3.05326  2.57263  3.10276  0.18448     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     45   3.05326  2.57263  3.10276  0.18448     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01899  3.97309        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_twentyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:14:58 2012
+NSEQ  80
+EFFN  3.725586
+CKSUM 164171626
+STATS LOCAL MSV       -6.7851  0.71931
+STATS LOCAL VITERBI   -7.7642  0.71931
+STATS LOCAL FORWARD   -4.0342  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.67686  1.18328  1.40275  1.34382
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  0.00000        *
+      1   3.21219  2.67356  3.25556  0.15997      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+      2   3.57161  0.11484  3.61499  2.92879      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+      3   3.57161  0.11484  3.61499  2.92879      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+      4   3.03000  3.70879  0.10473  3.62635      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+      5   3.03000  3.70879  0.10473  3.62635      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+      6   0.12693  3.50100  2.87985  3.41433      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+      7   3.57161  0.11484  3.61499  2.92879      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+      8   3.03000  3.70879  0.10473  3.62635      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+      9   0.12693  3.50100  2.87985  3.41433      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     10   3.57161  0.11484  3.61499  2.92879     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     11   0.96974  2.19283  2.21176  0.91702     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     12   3.57161  0.11484  3.61499  2.92879     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     13   3.57161  0.11484  3.61499  2.92879     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     14   3.57161  0.11484  3.61499  2.92879     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     15   3.57161  0.11484  3.61499  2.92879     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     16   3.57161  0.11484  3.61499  2.92879     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     17   3.03000  3.70879  0.10473  3.62635     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     18   3.21219  2.67356  3.25556  0.15997     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     19   3.03000  3.70879  0.10473  3.62635     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     20   0.12693  3.50100  2.87985  3.41433     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     21   3.21219  2.67356  3.25556  0.15997     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     22   0.12693  3.50100  2.87985  3.41433     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     23   3.03000  3.70879  0.10473  3.62635     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     24   3.21219  2.67356  3.25556  0.15997     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     25   0.12693  3.50100  2.87985  3.41433     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     26   3.21219  2.67356  3.25556  0.15997     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     27   3.03000  3.70879  0.10473  3.62635     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     28   3.57161  0.11484  3.61499  2.92879     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     29   3.57161  0.11484  3.61499  2.92879     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     30   3.57161  0.11484  3.61499  2.92879     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     31   3.57161  0.11484  3.61499  2.92879     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     32   1.47566  2.79589  0.44584  2.65889     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     33   3.21219  2.67356  3.25556  0.15997     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     34   3.21219  2.67356  3.25556  0.15997     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     35   3.03000  3.70879  0.10473  3.62635     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     36   0.12693  3.50100  2.87985  3.41433     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     37   3.03000  3.70879  0.10473  3.62635     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     38   2.51005  1.14063  2.57971  0.64756     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     39   3.03000  3.70879  0.10473  3.62635     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     40   3.21219  2.67356  3.25556  0.15997     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     41   2.74743  0.40640  2.81541  1.56072     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     42   0.12693  3.50100  2.87985  3.41433     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     43   3.21219  2.67356  3.25556  0.15997     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     44   3.21219  2.67356  3.25556  0.15997     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03433  4.08186  4.08186  1.46634  0.26236  1.09861  0.40547
+     45   3.21219  2.67356  3.25556  0.15997     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01731  4.06484        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_twentynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:15:49 2012
+NSEQ  21
+EFFN  3.273560
+CKSUM 227994029
+STATS LOCAL MSV       -8.0538  0.71932
+STATS LOCAL VITERBI   -7.6828  0.71932
+STATS LOCAL FORWARD   -3.9064  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54913  1.52902  1.25194  1.25573
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  0.00000        *
+      1   2.93644  3.57164  0.11894  3.47464      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+      2   3.41483  0.13241  3.46506  2.81567      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+      3   0.14401  3.36441  2.79161  3.26457      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+      4   3.41483  0.13241  3.46506  2.81567      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+      5   3.41483  0.13241  3.46506  2.81567      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+      6   3.07263  2.58497  3.12140  0.18127      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+      7   3.07263  2.58497  3.12140  0.18127      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+      8   3.41483  0.13241  3.46506  2.81567      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+      9   3.07263  2.58497  3.12140  0.18127      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     10   2.93644  3.57164  0.11894  3.47464     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     11   2.93644  3.57164  0.11894  3.47464     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     12   3.07263  2.58497  3.12140  0.18127     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     13   0.14401  3.36441  2.79161  3.26457     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     14   3.07263  2.58497  3.12140  0.18127     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     15   3.07263  2.58497  3.12140  0.18127     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     16   3.41483  0.13241  3.46506  2.81567     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     17   3.41483  0.13241  3.46506  2.81567     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     18   2.93644  3.57164  0.11894  3.47464     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     19   2.93644  3.57164  0.11894  3.47464     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     20   0.14401  3.36441  2.79161  3.26457     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     21   0.14401  3.36441  2.79161  3.26457     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     22   2.93644  3.57164  0.11894  3.47464     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     23   2.93644  3.57164  0.11894  3.47464     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     24   3.07263  2.58497  3.12140  0.18127     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     25   0.14401  3.36441  2.79161  3.26457     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     26   3.07263  2.58497  3.12140  0.18127     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     27   2.93644  3.57164  0.11894  3.47464     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     28   3.41483  0.13241  3.46506  2.81567     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     29   3.41483  0.13241  3.46506  2.81567     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     30   3.41483  0.13241  3.46506  2.81567     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     31   2.93644  3.57164  0.11894  3.47464     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     32   2.93644  3.57164  0.11894  3.47464     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     33   3.07263  2.58497  3.12140  0.18127     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     34   3.07263  2.58497  3.12140  0.18127     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     35   2.93644  3.57164  0.11894  3.47464     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     36   0.14401  3.36441  2.79161  3.26457     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     37   2.93644  3.57164  0.11894  3.47464     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     38   3.07263  2.58497  3.12140  0.18127     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     39   0.14401  3.36441  2.79161  3.26457     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     40   3.07263  2.58497  3.12140  0.18127     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     41   3.07263  2.58497  3.12140  0.18127     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     42   0.14401  3.36441  2.79161  3.26457     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     43   3.07263  2.58497  3.12140  0.18127     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     44   2.93644  3.57164  0.11894  3.47464     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00251  4.00251  1.46634  0.26236  1.09861  0.40547
+     45   0.14401  3.36441  2.79161  3.26457     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01878  3.98408        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_twentyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:14:27 2012
+NSEQ  34
+EFFN  3.233154
+CKSUM 1154514765
+STATS LOCAL MSV       -8.0542  0.71933
+STATS LOCAL VITERBI   -7.6005  0.71933
+STATS LOCAL FORWARD   -4.1707  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63509  1.32112  1.25696  1.37156
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  0.00000        *
+      1   3.05933  2.57650  3.10860  0.18347      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+      2   3.05933  2.57650  3.10860  0.18347      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+      3   2.92712  3.55815  0.12045  3.45977      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+      4   3.39955  0.13428  3.45042  2.80450      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+      5   0.14580  3.35117  2.78298  3.25009      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+      6   3.39955  0.13428  3.45042  2.80450      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+      7   3.39955  0.13428  3.45042  2.80450      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+      8   2.92712  3.55815  0.12045  3.45977      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+      9   3.39955  0.13428  3.45042  2.80450      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     10   3.39955  0.13428  3.45042  2.80450     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     11   3.39955  0.13428  3.45042  2.80450     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     12   3.05933  2.57650  3.10860  0.18347     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     13   3.39955  0.13428  3.45042  2.80450     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     14   3.05933  2.57650  3.10860  0.18347     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     15   3.39955  0.13428  3.45042  2.80450     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     16   2.92712  3.55815  0.12045  3.45977     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     17   2.92712  3.55815  0.12045  3.45977     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     18   2.92712  3.55815  0.12045  3.45977     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     19   0.14580  3.35117  2.78298  3.25009     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     20   2.92712  3.55815  0.12045  3.45977     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     21   3.05933  2.57650  3.10860  0.18347     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     22   2.92712  3.55815  0.12045  3.45977     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     23   2.92712  3.55815  0.12045  3.45977     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     24   3.05933  2.57650  3.10860  0.18347     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     25   0.14580  3.35117  2.78298  3.25009     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     26   3.39955  0.13428  3.45042  2.80450     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     27   2.92712  3.55815  0.12045  3.45977     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     28   3.05933  2.57650  3.10860  0.18347     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     29   3.39955  0.13428  3.45042  2.80450     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     30   3.39955  0.13428  3.45042  2.80450     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     31   2.92712  3.55815  0.12045  3.45977     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     32   0.14580  3.35117  2.78298  3.25009     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     33   3.05933  2.57650  3.10860  0.18347     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     34   3.05933  2.57650  3.10860  0.18347     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     35   2.92712  3.55815  0.12045  3.45977     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     36   0.14580  3.35117  2.78298  3.25009     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     37   2.92712  3.55815  0.12045  3.45977     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     38   2.96228  2.34704  3.01482  0.21866     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     39   2.92712  3.55815  0.12045  3.45977     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     40   3.05933  2.57650  3.10860  0.18347     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     41   3.39955  0.13428  3.45042  2.80450     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     42   0.14580  3.35117  2.78298  3.25009     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     43   3.05933  2.57650  3.10860  0.18347     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     44   0.14580  3.35117  2.78298  3.25009     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03751  3.99510  3.99510  1.46634  0.26236  1.09861  0.40547
+     45   0.14580  3.35117  2.78298  3.25009     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01893  3.97653        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_twentyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:15:29 2012
+NSEQ  46
+EFFN  3.203491
+CKSUM 3710830813
+STATS LOCAL MSV       -7.9651  0.71931
+STATS LOCAL VITERBI   -7.6060  0.71931
+STATS LOCAL FORWARD   -3.9595  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72063  1.38893  1.14226  1.37592
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98963  3.98963  1.46634  0.26236  0.00000        *
+      1   2.92018  3.54810  0.12159  3.44870      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98963  3.98963  1.46634  0.26236  1.09861  0.40547
+      2   3.38820  0.13570  3.43954  2.79618      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98963  3.98963  1.46634  0.26236  1.09861  0.40547
+      3   0.14715  3.34133  2.77656  3.23934      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98963  3.98963  1.46634  0.26236  1.09861  0.40547
+      4   3.38820  0.13570  3.43954  2.79618      4 - -
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     43   3.04948  2.57022  3.09913  0.18511     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98963  3.98963  1.46634  0.26236  1.09861  0.40547
+     44   2.92018  3.54810  0.12159  3.44870     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98963  3.98963  1.46634  0.26236  1.09861  0.40547
+     45   0.14715  3.34133  2.77656  3.23934     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01904  3.97095        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_twentysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:15:14 2012
+NSEQ  79
+EFFN  3.167908
+CKSUM 3550214454
+STATS LOCAL MSV       -7.9545  0.71932
+STATS LOCAL VITERBI   -7.8082  0.71932
+STATS LOCAL FORWARD   -3.9919  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81952  1.32635  1.09128  1.44112
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  0.00000        *
+      1   2.91171  3.53590  0.12300  3.43526      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+      2   3.37442  0.13743  3.42633  2.78607      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+      3   2.91171  3.53590  0.12300  3.43526      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+      4   3.37442  0.13743  3.42633  2.78607      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+      5   3.37442  0.13743  3.42633  2.78607      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+      6   3.37442  0.13743  3.42633  2.78607      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+      7   3.03756  2.56262  3.08766  0.18713      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+      8   3.37442  0.13743  3.42633  2.78607      8 - -
+          1.38629  1.38629  1.38629  1.38629
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+      9   3.03756  2.56262  3.08766  0.18713      9 - -
+          1.38629  1.38629  1.38629  1.38629
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+     10   2.91171  3.53590  0.12300  3.43526     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+     11   2.91171  3.53590  0.12300  3.43526     11 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+     13   0.14880  3.32941  2.76876  3.22630     13 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+     36   0.14880  3.32941  2.76876  3.22630     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+     37   2.91171  3.53590  0.12300  3.43526     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+     38   3.03756  2.56262  3.08766  0.18713     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+     39   2.91171  3.53590  0.12300  3.43526     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+     40   3.03756  2.56262  3.08766  0.18713     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+     41   3.37442  0.13743  3.42633  2.78607     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+     42   0.14880  3.32941  2.76876  3.22630     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+     43   3.03756  2.56262  3.08766  0.18713     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+     44   2.91171  3.53590  0.12300  3.43526     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98302  3.98302  1.46634  0.26236  1.09861  0.40547
+     45   0.14880  3.32941  2.76876  3.22630     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01917  3.96422        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_twentythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:14:49 2012
+NSEQ  9
+EFFN  3.291504
+CKSUM 447960315
+STATS LOCAL MSV       -8.0375  0.71931
+STATS LOCAL VITERBI   -7.7666  0.71931
+STATS LOCAL FORWARD   -4.4115  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81791  1.60663  1.14058  1.14747
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  0.00000        *
+      1   3.07849  2.58870  3.12703  0.18032      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      2   2.94052  3.57756  0.11828  3.48118      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      3   3.42154  0.13160  3.47149  2.82057      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      4   0.14323  3.37023  2.79540  3.27094      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      5   3.42154  0.13160  3.47149  2.82057      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      6   3.07849  2.58870  3.12703  0.18032      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      7   2.94052  3.57756  0.11828  3.48118      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      8   0.14323  3.37023  2.79540  3.27094      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      9   3.42154  0.13160  3.47149  2.82057      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     10   3.07849  2.58870  3.12703  0.18032     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     11   3.42154  0.13160  3.47149  2.82057     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     12   3.42154  0.13160  3.47149  2.82057     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     13   3.42154  0.13160  3.47149  2.82057     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     14   3.07849  2.58870  3.12703  0.18032     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     15   3.07849  2.58870  3.12703  0.18032     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     16   2.94052  3.57756  0.11828  3.48118     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     17   2.94052  3.57756  0.11828  3.48118     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     18   2.94052  3.57756  0.11828  3.48118     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     19   2.94052  3.57756  0.11828  3.48118     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     20   3.07849  2.58870  3.12703  0.18032     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     21   3.07849  2.58870  3.12703  0.18032     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     22   2.94052  3.57756  0.11828  3.48118     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     23   2.94052  3.57756  0.11828  3.48118     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     24   3.07849  2.58870  3.12703  0.18032     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     25   0.14323  3.37023  2.79540  3.27094     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     26   3.07849  2.58870  3.12703  0.18032     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     27   2.94052  3.57756  0.11828  3.48118     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     28   3.07849  2.58870  3.12703  0.18032     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     29   2.94052  3.57756  0.11828  3.48118     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     30   2.94052  3.57756  0.11828  3.48118     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     31   2.94052  3.57756  0.11828  3.48118     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     32   0.14323  3.37023  2.79540  3.27094     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     33   3.07849  2.58870  3.12703  0.18032     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     34   3.07849  2.58870  3.12703  0.18032     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     35   2.94052  3.57756  0.11828  3.48118     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     36   0.14323  3.37023  2.79540  3.27094     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     37   2.94052  3.57756  0.11828  3.48118     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     38   3.42154  0.13160  3.47149  2.82057     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     39   2.94052  3.57756  0.11828  3.48118     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     40   3.07849  2.58870  3.12703  0.18032     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     41   3.42154  0.13160  3.47149  2.82057     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     42   0.14323  3.37023  2.79540  3.27094     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     43   3.07849  2.58870  3.12703  0.18032     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     44   3.07849  2.58870  3.12703  0.18032     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     45   3.07849  2.58870  3.12703  0.18032     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01872  3.98741        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_twentytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:14:41 2012
+NSEQ  26
+EFFN  3.354736
+CKSUM 4045893695
+STATS LOCAL MSV       -8.1217  0.71933
+STATS LOCAL VITERBI   -7.7415  0.71933
+STATS LOCAL FORWARD   -4.1202  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45440  1.38814  1.28009  1.43168
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  0.00000        *
+      1   3.09893  2.60170  3.14669  0.17702      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+      2   3.09893  2.60170  3.14669  0.17702      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+      3   2.95464  3.59810  0.11603  3.50385      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+      4   3.44487  0.12881  3.49383  2.83755      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+      5   0.14055  3.39047  2.80855  3.29310      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+      6   3.44487  0.12881  3.49383  2.83755      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+      7   3.44487  0.12881  3.49383  2.83755      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+      8   2.95464  3.59810  0.11603  3.50385      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+      9   3.44487  0.12881  3.49383  2.83755      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     10   3.44487  0.12881  3.49383  2.83755     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     11   3.44487  0.12881  3.49383  2.83755     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     12   3.09893  2.60170  3.14669  0.17702     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     13   3.09893  2.60170  3.14669  0.17702     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     14   0.14055  3.39047  2.80855  3.29310     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     15   3.09893  2.60170  3.14669  0.17702     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     16   2.95464  3.59810  0.11603  3.50385     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     17   2.95464  3.59810  0.11603  3.50385     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     18   2.95464  3.59810  0.11603  3.50385     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     19   0.14055  3.39047  2.80855  3.29310     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     20   2.95464  3.59810  0.11603  3.50385     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     21   3.09893  2.60170  3.14669  0.17702     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     22   2.95464  3.59810  0.11603  3.50385     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     23   2.95464  3.59810  0.11603  3.50385     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     24   3.09893  2.60170  3.14669  0.17702     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     25   0.14055  3.39047  2.80855  3.29310     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     26   3.44487  0.12881  3.49383  2.83755     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     27   1.32523  2.64731  0.54172  2.50509     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     28   3.44487  0.12881  3.49383  2.83755     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     29   3.44487  0.12881  3.49383  2.83755     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     30   3.44487  0.12881  3.49383  2.83755     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     31   2.41850  3.31730  0.18128  3.20662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     32   0.14055  3.39047  2.80855  3.29310     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     33   3.09893  2.60170  3.14669  0.17702     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     34   3.09893  2.60170  3.14669  0.17702     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     35   2.95464  3.59810  0.11603  3.50385     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     36   0.14055  3.39047  2.80855  3.29310     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     37   2.95464  3.59810  0.11603  3.50385     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     38   0.14055  3.39047  2.80855  3.29310     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     39   2.95464  3.59810  0.11603  3.50385     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     40   3.09893  2.60170  3.14669  0.17702     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     41   3.44487  0.12881  3.49383  2.83755     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     42   0.14055  3.39047  2.80855  3.29310     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     43   3.09893  2.60170  3.14669  0.17702     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     44   0.14055  3.39047  2.80855  3.29310     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01724  4.01724  1.46634  0.26236  1.09861  0.40547
+     45   0.14055  3.39047  2.80855  3.29310     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01850  3.99907        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Tu_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 14:11:19 2012
+NSEQ  46
+EFFN  3.293335
+CKSUM 771223492
+STATS LOCAL MSV       -8.2205  0.71933
+STATS LOCAL VITERBI   -7.6567  0.71933
+STATS LOCAL FORWARD   -4.0365  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81845  1.08779  1.39104  1.37855
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  0.00000        *
+      1   0.14315  3.37082  2.79579  3.27159      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+      2   3.42222  0.13151  3.47214  2.82107      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+      3   3.42222  0.13151  3.47214  2.82107      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+      4   2.94093  3.57817  0.11821  3.48184      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+      5   3.42222  0.13151  3.47214  2.82107      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+      6   2.94093  3.57817  0.11821  3.48184      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+      7   3.42222  0.13151  3.47214  2.82107      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+      8   3.42222  0.13151  3.47214  2.82107      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+      9   3.42222  0.13151  3.47214  2.82107      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     10   3.07909  2.58908  3.12761  0.18022     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     11   0.14315  3.37082  2.79579  3.27159     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     12   0.14315  3.37082  2.79579  3.27159     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     13   1.85450  2.29279  2.49389  0.41567     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     14   3.42222  0.13151  3.47214  2.82107     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     15   3.42222  0.13151  3.47214  2.82107     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     16   2.94093  3.57817  0.11821  3.48184     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     17   2.94093  3.57817  0.11821  3.48184     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     18   3.42222  0.13151  3.47214  2.82107     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     19   3.07909  2.58908  3.12761  0.18022     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     20   2.94093  3.57817  0.11821  3.48184     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     21   3.42222  0.13151  3.47214  2.82107     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     22   2.94093  3.57817  0.11821  3.48184     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     23   2.94093  3.57817  0.11821  3.48184     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     24   3.07909  2.58908  3.12761  0.18022     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     25   0.14315  3.37082  2.79579  3.27159     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     26   3.07909  2.58908  3.12761  0.18022     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     27   2.94093  3.57817  0.11821  3.48184     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     28   3.42222  0.13151  3.47214  2.82107     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     29   3.42222  0.13151  3.47214  2.82107     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     30   3.42222  0.13151  3.47214  2.82107     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     31   3.42222  0.13151  3.47214  2.82107     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     32   3.07909  2.58908  3.12761  0.18022     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     33   3.07909  2.58908  3.12761  0.18022     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     34   3.07909  2.58908  3.12761  0.18022     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     35   2.94093  3.57817  0.11821  3.48184     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     36   0.14315  3.37082  2.79579  3.27159     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     37   2.94093  3.57817  0.11821  3.48184     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     38   3.42222  0.13151  3.47214  2.82107     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     39   2.94093  3.57817  0.11821  3.48184     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     40   3.07909  2.58908  3.12761  0.18022     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     41   3.42222  0.13151  3.47214  2.82107     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     42   0.14315  3.37082  2.79579  3.27159     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     43   3.07909  2.58908  3.12761  0.18022     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     44   3.07909  2.58908  3.12761  0.18022     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     45   3.07909  2.58908  3.12761  0.18022     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01872  3.98775        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:46:28 2012
+NSEQ  15
+EFFN  3.555908
+CKSUM 3307981999
+STATS LOCAL MSV       -7.3697  0.71932
+STATS LOCAL VITERBI   -7.7916  0.71932
+STATS LOCAL FORWARD   -4.0667  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.84066  1.25168  1.24640  1.31779
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  0.00000        *
+      1   2.99700  3.66014  0.10954  3.57244      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+      2   3.51569  0.12078  3.56157  2.88874      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+      3   2.99700  3.66014  0.10954  3.57244      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+      4   3.51569  0.12078  3.56157  2.88874      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+      5   3.51569  0.12078  3.56157  2.88874      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+      6   3.51569  0.12078  3.56157  2.88874      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+      7   2.99700  3.66014  0.10954  3.57244      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+      8   2.65175  0.46251  2.72141  1.45248      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+      9   2.83612  1.92482  2.89418  0.30097      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     10   0.13276  3.45211  2.84839  3.36066     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     11   2.99700  3.66014  0.10954  3.57244     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     12   2.97860  2.21233  3.03114  0.23391     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     13   0.13276  3.45211  2.84839  3.36066     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     14   2.74011  1.74021  2.80161  0.35776     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     15   3.16173  2.64157  3.20706  0.16733     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     16   3.51569  0.12078  3.56157  2.88874     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     17   3.16173  2.64157  3.20706  0.16733     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     18   0.25542  3.06338  2.07018  2.94663     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     19   2.99700  3.66014  0.10954  3.57244     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     20   3.51569  0.12078  3.56157  2.88874     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     21   2.99700  3.66014  0.10954  3.57244     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     22   2.99700  3.66014  0.10954  3.57244     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     23   2.99700  3.66014  0.10954  3.57244     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     24   3.51569  0.12078  3.56157  2.88874     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     25   0.13276  3.45211  2.84839  3.36066     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     26   3.16173  2.64157  3.20706  0.16733     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     27   2.99700  3.66014  0.10954  3.57244     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     28   3.51569  0.12078  3.56157  2.88874     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     29   3.51569  0.12078  3.56157  2.88874     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     30   3.16173  2.64157  3.20706  0.16733     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     31   2.99700  3.66014  0.10954  3.57244     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     32   3.16173  2.64157  3.20706  0.16733     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     33   2.98253  2.22067  3.03491  0.23228     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     34   3.51569  0.12078  3.56157  2.88874     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     35   2.99700  3.66014  0.10954  3.57244     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     36   0.13276  3.45211  2.84839  3.36066     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     37   2.99700  3.66014  0.10954  3.57244     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     38   3.51569  0.12078  3.56157  2.88874     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     39   2.99700  3.66014  0.10954  3.57244     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     40   3.16173  2.64157  3.20706  0.16733     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     41   3.51569  0.12078  3.56157  2.88874     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     42   0.13276  3.45211  2.84839  3.36066     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     43   3.16173  2.64157  3.20706  0.16733     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     44   3.16173  2.64157  3.20706  0.16733     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03536  4.05281  4.05281  1.46634  0.26236  1.09861  0.40547
+     45   3.16173  2.64157  3.20706  0.16733     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01784  4.03529        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_eighteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:49:12 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1724843271
+STATS LOCAL MSV       -7.7061  0.72856
+STATS LOCAL VITERBI   -8.2545  0.72856
+STATS LOCAL FORWARD   -3.5133  0.72856
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63446  1.33409  1.26157  1.35351
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.81865  0.23582  2.88868  2.35662     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   1.03732  1.95876  1.96551  1.00928     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_eighty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:08:50 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1633184760
+STATS LOCAL MSV       -7.5886  0.72993
+STATS LOCAL VITERBI   -8.4622  0.72993
+STATS LOCAL FORWARD   -3.2104  0.72993
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21109  1.87672  1.59719  1.05967
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.92825  2.28391  0.95698  2.13014     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_eightyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:08:58 2012
+NSEQ  7
+EFFN  3.120605
+CKSUM 2942515715
+STATS LOCAL MSV       -8.0916  0.71933
+STATS LOCAL VITERBI   -7.6121  0.71933
+STATS LOCAL FORWARD   -4.1184  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71913  1.33450  1.04070  1.58825
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  0.00000        *
+      1   2.90025  3.51940  0.12492  3.41710      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+      2   3.35584  0.13982  3.40850  2.77239      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+      3   2.90025  3.51940  0.12492  3.41710      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+      4   3.35584  0.13982  3.40850  2.77239      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+      5   2.90025  3.51940  0.12492  3.41710      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+      6   2.90025  3.51940  0.12492  3.41710      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+      7   3.02155  2.55238  3.07224  0.18988      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+      8   0.15106  3.31333  2.75822  3.20874      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+      9   3.02155  2.55238  3.07224  0.18988      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     10   2.90025  3.51940  0.12492  3.41710     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     11   2.90025  3.51940  0.12492  3.41710     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     12   3.35584  0.13982  3.40850  2.77239     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     13   0.15106  3.31333  2.75822  3.20874     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     14   3.02155  2.55238  3.07224  0.18988     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     15   3.02155  2.55238  3.07224  0.18988     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     16   3.35584  0.13982  3.40850  2.77239     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     17   3.35584  0.13982  3.40850  2.77239     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     18   2.90025  3.51940  0.12492  3.41710     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     19   3.02155  2.55238  3.07224  0.18988     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     20   0.15106  3.31333  2.75822  3.20874     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     21   3.35584  0.13982  3.40850  2.77239     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     22   3.35584  0.13982  3.40850  2.77239     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     23   2.90025  3.51940  0.12492  3.41710     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     24   3.35584  0.13982  3.40850  2.77239     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     25   0.15106  3.31333  2.75822  3.20874     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     26   3.35584  0.13982  3.40850  2.77239     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     27   2.90025  3.51940  0.12492  3.41710     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     28   2.90025  3.51940  0.12492  3.41710     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     29   0.15106  3.31333  2.75822  3.20874     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     30   3.02155  2.55238  3.07224  0.18988     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     31   2.90025  3.51940  0.12492  3.41710     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     32   2.90025  3.51940  0.12492  3.41710     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     33   0.15106  3.31333  2.75822  3.20874     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     34   2.90025  3.51940  0.12492  3.41710     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     35   2.90025  3.51940  0.12492  3.41710     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     36   0.15106  3.31333  2.75822  3.20874     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     37   2.90025  3.51940  0.12492  3.41710     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     38   3.35584  0.13982  3.40850  2.77239     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     39   2.90025  3.51940  0.12492  3.41710     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     40   3.02155  2.55238  3.07224  0.18988     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     41   2.90025  3.51940  0.12492  3.41710     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     42   3.02155  2.55238  3.07224  0.18988     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     43   3.02155  2.55238  3.07224  0.18988     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     44   3.35584  0.13982  3.40850  2.77239     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     45   3.35584  0.13982  3.40850  2.77239     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01934  3.95520        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_eleven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:47:03 2012
+NSEQ  16
+EFFN  4.003906
+CKSUM 372857925
+STATS LOCAL MSV       -7.0006  0.71932
+STATS LOCAL VITERBI   -7.7597  0.71932
+STATS LOCAL FORWARD   -4.1325  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.68630  1.38129  1.35092  1.18895
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  0.00000        *
+      1   3.07941  3.78200  0.09794  3.70762      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+      2   3.65632  0.10647  3.69581  2.98897      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+      3   3.07941  3.78200  0.09794  3.70762      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+      4   3.65632  0.10647  3.69581  2.98897      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+      5   3.65632  0.10647  3.69581  2.98897      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+      6   3.29032  2.72312  3.33061  0.14929      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+      7   0.37762  2.89581  1.62725  2.76799      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+      8   0.38115  2.89050  1.61829  2.76239      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+      9   2.58702  1.21331  2.65504  0.58474      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     10   0.17862  3.35385  2.40641  3.25741     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     11   3.07941  3.78200  0.09794  3.70762     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     12   3.29032  2.72312  3.33061  0.14929     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     13   0.11859  3.57556  2.92772  3.49628     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     14   3.29032  2.72312  3.33061  0.14929     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     15   3.29032  2.72312  3.33061  0.14929     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     16   3.65632  0.10647  3.69581  2.98897     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     17   3.09042  2.23013  3.13963  0.21852     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     18   3.07941  3.78200  0.09794  3.70762     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     19   2.73240  1.53230  2.79555  0.41883     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     20   2.73627  1.53977  2.79930  0.41566     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     21   0.11859  3.57556  2.92772  3.49628     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     22   3.07941  3.78200  0.09794  3.70762     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     23   3.07941  3.78200  0.09794  3.70762     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     24   3.65632  0.10647  3.69581  2.98897     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     25   0.11859  3.57556  2.92772  3.49628     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     26   3.29032  2.72312  3.33061  0.14929     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     27   3.07941  3.78200  0.09794  3.70762     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     28   3.65632  0.10647  3.69581  2.98897     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     29   3.65632  0.10647  3.69581  2.98897     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     30   3.29032  2.72312  3.33061  0.14929     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     31   3.07941  3.78200  0.09794  3.70762     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     32   3.29032  2.72312  3.33061  0.14929     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     33   2.73240  1.53230  2.79555  0.41883     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     34   3.65632  0.10647  3.69581  2.98897     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     35   3.07941  3.78200  0.09794  3.70762     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     36   0.11859  3.57556  2.92772  3.49628     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     37   3.07941  3.78200  0.09794  3.70762     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     38   3.65632  0.10647  3.69581  2.98897     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     39   3.07941  3.78200  0.09794  3.70762     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     40   3.29032  2.72312  3.33061  0.14929     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     41   3.65632  0.10647  3.69581  2.98897     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     42   0.11859  3.57556  2.92772  3.49628     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     43   3.29032  2.72312  3.33061  0.14929     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     44   3.29032  2.72312  3.33061  0.14929     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03277  4.12776  4.12776  1.46634  0.26236  1.09861  0.40547
+     45   3.29032  2.72312  3.33061  0.14929     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01652  4.11151        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fifteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:48:27 2012
+NSEQ  4
+EFFN  3.238281
+CKSUM 701941785
+STATS LOCAL MSV       -8.1331  0.71932
+STATS LOCAL VITERBI   -7.7042  0.71932
+STATS LOCAL FORWARD   -4.0851  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82956  1.19546  1.32376  1.30631
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  0.00000        *
+      1   3.40150  0.13404  3.45229  2.80593      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      2   2.92831  3.55987  0.12026  3.46167      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      3   3.40150  0.13404  3.45229  2.80593      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      4   3.40150  0.13404  3.45229  2.80593      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      5   3.06103  2.57758  3.11024  0.18319      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      6   2.92831  3.55987  0.12026  3.46167      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      7   3.40150  0.13404  3.45229  2.80593      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      8   3.06103  2.57758  3.11024  0.18319      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      9   2.92831  3.55987  0.12026  3.46167      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     10   2.92831  3.55987  0.12026  3.46167     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     11   3.40150  0.13404  3.45229  2.80593     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     12   3.06103  2.57758  3.11024  0.18319     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     13   0.14557  3.35286  2.78409  3.25194     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     14   3.06103  2.57758  3.11024  0.18319     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     15   3.06103  2.57758  3.11024  0.18319     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     16   3.40150  0.13404  3.45229  2.80593     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     17   3.06103  2.57758  3.11024  0.18319     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     18   0.14557  3.35286  2.78409  3.25194     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     19   2.92831  3.55987  0.12026  3.46167     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     20   3.40150  0.13404  3.45229  2.80593     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     21   0.14557  3.35286  2.78409  3.25194     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     22   2.92831  3.55987  0.12026  3.46167     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     23   2.92831  3.55987  0.12026  3.46167     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     24   3.40150  0.13404  3.45229  2.80593     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     25   0.14557  3.35286  2.78409  3.25194     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     26   3.06103  2.57758  3.11024  0.18319     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     27   2.92831  3.55987  0.12026  3.46167     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     28   3.40150  0.13404  3.45229  2.80593     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     29   3.40150  0.13404  3.45229  2.80593     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     30   3.06103  2.57758  3.11024  0.18319     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     31   2.92831  3.55987  0.12026  3.46167     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     32   3.06103  2.57758  3.11024  0.18319     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     33   3.40150  0.13404  3.45229  2.80593     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     34   3.40150  0.13404  3.45229  2.80593     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     35   2.92831  3.55987  0.12026  3.46167     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     36   0.14557  3.35286  2.78409  3.25194     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     37   2.92831  3.55987  0.12026  3.46167     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     38   3.40150  0.13404  3.45229  2.80593     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     39   2.92831  3.55987  0.12026  3.46167     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     40   3.06103  2.57758  3.11024  0.18319     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     41   3.40150  0.13404  3.45229  2.80593     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     42   0.14557  3.35286  2.78409  3.25194     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     43   3.06103  2.57758  3.11024  0.18319     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     44   3.06103  2.57758  3.11024  0.18319     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     45   3.06103  2.57758  3.11024  0.18319     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01891  3.97749        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fifty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:00:25 2012
+NSEQ  5
+EFFN  3.276367
+CKSUM 1997056284
+STATS LOCAL MSV       -7.8981  0.71932
+STATS LOCAL VITERBI   -7.7982  0.71932
+STATS LOCAL FORWARD   -3.9718  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.69966  1.20121  1.19694  1.54034
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  0.00000        *
+      1   3.41588  0.13228  3.46607  2.81644      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      2   3.07355  2.58556  3.12228  0.18112      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      3   3.41588  0.13228  3.46607  2.81644      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      4   3.41588  0.13228  3.46607  2.81644      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      5   3.07355  2.58556  3.12228  0.18112      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      6   2.93708  3.57257  0.11883  3.47567      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      7   2.93708  3.57257  0.11883  3.47567      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      8   0.14388  3.36532  2.79221  3.26557      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      9   3.41588  0.13228  3.46607  2.81644      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     10   3.07355  2.58556  3.12228  0.18112     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     11   3.07355  2.58556  3.12228  0.18112     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     12   1.16980  2.13382  2.18471  0.77941     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     13   3.41588  0.13228  3.46607  2.81644     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     14   0.14388  3.36532  2.79221  3.26557     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     15   3.07355  2.58556  3.12228  0.18112     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     16   3.41588  0.13228  3.46607  2.81644     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     17   3.41588  0.13228  3.46607  2.81644     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     18   2.93708  3.57257  0.11883  3.47567     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     19   2.93708  3.57257  0.11883  3.47567     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     20   0.14388  3.36532  2.79221  3.26557     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     21   2.93708  3.57257  0.11883  3.47567     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     22   0.14388  3.36532  2.79221  3.26557     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     23   2.93708  3.57257  0.11883  3.47567     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     24   3.41588  0.13228  3.46607  2.81644     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     25   0.14388  3.36532  2.79221  3.26557     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     26   3.07355  2.58556  3.12228  0.18112     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     27   2.93708  3.57257  0.11883  3.47567     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     28   3.41588  0.13228  3.46607  2.81644     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     29   3.41588  0.13228  3.46607  2.81644     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     30   3.07355  2.58556  3.12228  0.18112     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     31   2.93708  3.57257  0.11883  3.47567     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     32   3.07355  2.58556  3.12228  0.18112     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     33   3.41588  0.13228  3.46607  2.81644     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     34   3.07355  2.58556  3.12228  0.18112     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     35   2.93708  3.57257  0.11883  3.47567     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     36   0.14388  3.36532  2.79221  3.26557     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     37   2.93708  3.57257  0.11883  3.47567     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     38   2.93708  3.57257  0.11883  3.47567     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     39   2.93708  3.57257  0.11883  3.47567     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     40   3.41588  0.13228  3.46607  2.81644     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     41   3.41588  0.13228  3.46607  2.81644     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     42   2.93708  3.57257  0.11883  3.47567     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     43   3.41588  0.13228  3.46607  2.81644     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     44   2.93708  3.57257  0.11883  3.47567     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     45   0.14388  3.36532  2.79221  3.26557     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01878  3.98460        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fiftyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:01:50 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1699613320
+STATS LOCAL MSV       -7.6318  0.72711
+STATS LOCAL VITERBI   -8.2020  0.72711
+STATS LOCAL FORWARD   -3.3903  0.72711
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74442  1.24775  1.07836  1.61972
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fiftyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:01:18 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1683601753
+STATS LOCAL MSV       -7.3424  0.72822
+STATS LOCAL VITERBI   -8.3200  0.72822
+STATS LOCAL FORWARD   -3.5354  0.72822
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.51481  1.45293  1.31923  1.27682
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.81865  0.23582  2.88868  2.35662     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fiftyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:01:08 2012
+NSEQ  18
+EFFN  3.792480
+CKSUM 1836593675
+STATS LOCAL MSV       -7.5573  0.71932
+STATS LOCAL VITERBI   -7.7354  0.71932
+STATS LOCAL FORWARD   -4.1258  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22706  1.98680  1.67801  0.95980
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  0.00000        *
+      1   0.12480  3.51954  2.89175  3.43470      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+      2   3.59274  0.11268  3.63516  2.94385      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+      3   3.23149  2.68579  3.27409  0.15726      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+      4   3.23149  2.68579  3.27409  0.15726      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+      5   3.23149  2.68579  3.27409  0.15726      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+      6   3.23149  2.68579  3.27409  0.15726      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+      7   2.66915  1.49817  2.73378  0.44289      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+      8   3.23149  2.68579  3.27409  0.15726      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+      9   0.22785  3.17257  2.16193  3.06277      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     10   3.04238  3.72710  0.10299  3.64667     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     11   3.23149  2.68579  3.27409  0.15726     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     12   3.23149  2.68579  3.27409  0.15726     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     13   3.23149  2.68579  3.27409  0.15726     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     14   0.12480  3.51954  2.89175  3.43470     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     15   3.59274  0.11268  3.63516  2.94385     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     16   2.93327  2.00594  2.98835  0.27198     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     17   0.12480  3.51954  2.89175  3.43470     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     18   0.40741  2.82094  1.57420  2.68965     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     19   0.12480  3.51954  2.89175  3.43470     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     20   0.12480  3.51954  2.89175  3.43470     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     21   0.12480  3.51954  2.89175  3.43470     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     22   0.12480  3.51954  2.89175  3.43470     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     23   3.04238  3.72710  0.10299  3.64667     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     24   3.23149  2.68579  3.27409  0.15726     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     25   0.12480  3.51954  2.89175  3.43470     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     26   3.23149  2.68579  3.27409  0.15726     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     27   3.04238  3.72710  0.10299  3.64667     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     28   3.23149  2.68579  3.27409  0.15726     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     29   3.59274  0.11268  3.63516  2.94385     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     30   3.23149  2.68579  3.27409  0.15726     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     31   3.04238  3.72710  0.10299  3.64667     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     32   3.23149  2.68579  3.27409  0.15726     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     33   3.23149  2.68579  3.27409  0.15726     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     34   3.23149  2.68579  3.27409  0.15726     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     35   3.04238  3.72710  0.10299  3.64667     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     36   0.12480  3.51954  2.89175  3.43470     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     37   3.04238  3.72710  0.10299  3.64667     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     38   3.23149  2.68579  3.27409  0.15726     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     39   0.12480  3.51954  2.89175  3.43470     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     40   3.23149  2.68579  3.27409  0.15726     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     41   3.59274  0.11268  3.63516  2.94385     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     42   0.12480  3.51954  2.89175  3.43470     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     43   3.04238  3.72710  0.10299  3.64667     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     44   3.23149  2.68579  3.27409  0.15726     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03394  4.09309  4.09309  1.46634  0.26236  1.09861  0.40547
+     45   0.12480  3.51954  2.89175  3.43470     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01712  4.07626        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fiftynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:02:07 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4233284767
+STATS LOCAL MSV       -7.5002  0.72906
+STATS LOCAL VITERBI   -8.3932  0.72906
+STATS LOCAL FORWARD   -3.4475  0.72906
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62242  1.33410  1.22570  1.40393
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   1.89532  1.96405  1.06955  1.00436     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.92825  2.28391  0.95698  2.13014     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.57915  2.25909  2.64442  0.28946     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.81865  0.23582  2.88868  2.35662     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   0.23862  2.84929  2.43386  2.70756     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fiftyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:00:39 2012
+NSEQ  13
+EFFN  3.265869
+CKSUM 2943553555
+STATS LOCAL MSV       -8.1085  0.71931
+STATS LOCAL VITERBI   -7.6873  0.71931
+STATS LOCAL FORWARD   -3.9961  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62800  1.32403  1.11179  1.56711
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  0.00000        *
+      1   3.41194  0.13276  3.46229  2.81356      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+      2   3.41194  0.13276  3.46229  2.81356      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+      3   3.41194  0.13276  3.46229  2.81356      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+      4   2.16492  2.29577  0.63252  1.37316      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+      5   2.93468  3.56909  0.11922  3.47183      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+      6   3.41194  0.13276  3.46229  2.81356      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+      7   0.14434  3.36190  2.78998  3.26183      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+      8   2.93468  3.56909  0.11922  3.47183      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+      9   0.14434  3.36190  2.78998  3.26183      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     10   3.07011  2.58337  3.11897  0.18169     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     11   3.41194  0.13276  3.46229  2.81356     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     12   3.07011  2.58337  3.11897  0.18169     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     13   0.14434  3.36190  2.78998  3.26183     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     14   0.14434  3.36190  2.78998  3.26183     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     15   3.07011  2.58337  3.11897  0.18169     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     16   3.41194  0.13276  3.46229  2.81356     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     17   3.07011  2.58337  3.11897  0.18169     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     18   2.93468  3.56909  0.11922  3.47183     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     19   2.93468  3.56909  0.11922  3.47183     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     20   2.93468  3.56909  0.11922  3.47183     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     21   2.93468  3.56909  0.11922  3.47183     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     22   0.14434  3.36190  2.78998  3.26183     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     23   2.93468  3.56909  0.11922  3.47183     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     24   3.41194  0.13276  3.46229  2.81356     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     25   0.14434  3.36190  2.78998  3.26183     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     26   3.07011  2.58337  3.11897  0.18169     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     27   2.93468  3.56909  0.11922  3.47183     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     28   3.41194  0.13276  3.46229  2.81356     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     29   3.41194  0.13276  3.46229  2.81356     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     30   3.07011  2.58337  3.11897  0.18169     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     31   2.93468  3.56909  0.11922  3.47183     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     32   3.07011  2.58337  3.11897  0.18169     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     33   3.07011  2.58337  3.11897  0.18169     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     34   3.07011  2.58337  3.11897  0.18169     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     35   2.93468  3.56909  0.11922  3.47183     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     36   0.14434  3.36190  2.78998  3.26183     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     37   2.93468  3.56909  0.11922  3.47183     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     38   2.93468  3.56909  0.11922  3.47183     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     39   2.93468  3.56909  0.11922  3.47183     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     40   3.41194  0.13276  3.46229  2.81356     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     41   3.41194  0.13276  3.46229  2.81356     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     42   2.93468  3.56909  0.11922  3.47183     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     43   3.41194  0.13276  3.46229  2.81356     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     44   2.93468  3.56909  0.11922  3.47183     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00111  4.00111  1.46634  0.26236  1.09861  0.40547
+     45   0.14434  3.36190  2.78998  3.26183     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01881  3.98264        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fiftysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:01:32 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 296474965
+STATS LOCAL MSV       -7.2604  0.72972
+STATS LOCAL VITERBI   -8.2681  0.72972
+STATS LOCAL FORWARD   -3.5433  0.72972
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.42271  1.70465  1.46723  1.05975
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.92825  2.28391  0.95698  2.13014     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fiftythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:00:58 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2990168005
+STATS LOCAL MSV       -7.1646  0.72994
+STATS LOCAL VITERBI   -8.3625  0.72994
+STATS LOCAL FORWARD   -3.7526  0.72994
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.36617  1.47616  1.53354  1.20187
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.15554  1.00938  2.23102  0.88601     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.92825  2.28391  0.95698  2.13014     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   0.23862  2.84929  2.43386  2.70756     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fiftytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:00:49 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 142863865
+STATS LOCAL MSV       -7.7925  0.72071
+STATS LOCAL VITERBI   -7.6709  0.72071
+STATS LOCAL FORWARD   -4.2236  0.72071
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47110  1.51619  1.44961  1.15164
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   0.15719  3.27118  2.73043  3.16274     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.97980  2.52563  3.03204  0.19727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:45:56 2012
+NSEQ  11
+EFFN  3.536865
+CKSUM 2650403741
+STATS LOCAL MSV       -7.3857  0.71932
+STATS LOCAL VITERBI   -7.7979  0.71932
+STATS LOCAL FORWARD   -4.0496  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.61642  1.36997  1.33622  1.25724
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  0.00000        *
+      1   2.99315  3.65447  0.11011  3.56617      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+      2   3.50920  0.12149  3.55537  2.88407      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+      3   2.99315  3.65447  0.11011  3.56617      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+      4   3.50920  0.12149  3.55537  2.88407      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+      5   3.50920  0.12149  3.55537  2.88407      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+      6   3.50920  0.12149  3.55537  2.88407      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+      7   0.22094  3.15089  2.22952  3.03991      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+      8   3.15592  2.63789  3.20148  0.16820      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+      9   3.15592  2.63789  3.20148  0.16820      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     10   0.13346  3.44645  2.84474  3.35445     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     11   2.99315  3.65447  0.11011  3.56617     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     12   3.15592  2.63789  3.20148  0.16820     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     13   0.13346  3.44645  2.84474  3.35445     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     14   3.15592  2.63789  3.20148  0.16820     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     15   3.15592  2.63789  3.20148  0.16820     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     16   3.50920  0.12149  3.55537  2.88407     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     17   3.15592  2.63789  3.20148  0.16820     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     18   0.13346  3.44645  2.84474  3.35445     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     19   2.99315  3.65447  0.11011  3.56617     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     20   2.90372  2.06730  2.95916  0.26554     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     21   2.99315  3.65447  0.11011  3.56617     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     22   2.99315  3.65447  0.11011  3.56617     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     23   2.99315  3.65447  0.11011  3.56617     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     24   3.50920  0.12149  3.55537  2.88407     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     25   0.13346  3.44645  2.84474  3.35445     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     26   3.15592  2.63789  3.20148  0.16820     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     27   2.99315  3.65447  0.11011  3.56617     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     28   3.50920  0.12149  3.55537  2.88407     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     29   3.50920  0.12149  3.55537  2.88407     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     30   3.15592  2.63789  3.20148  0.16820     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     31   1.25961  2.65175  0.57195  2.50977     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     32   3.15592  2.63789  3.20148  0.16820     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     33   3.15592  2.63789  3.20148  0.16820     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     34   3.50920  0.12149  3.55537  2.88407     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     35   2.99315  3.65447  0.11011  3.56617     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     36   0.13346  3.44645  2.84474  3.35445     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     37   2.99315  3.65447  0.11011  3.56617     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     38   3.50920  0.12149  3.55537  2.88407     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     39   2.99315  3.65447  0.11011  3.56617     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     40   3.15592  2.63789  3.20148  0.16820     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     41   3.50920  0.12149  3.55537  2.88407     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     42   0.13346  3.44645  2.84474  3.35445     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     43   3.15592  2.63789  3.20148  0.16820     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     44   2.17823  2.42417  2.71887  0.31162     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03548  4.04950  4.04950  1.46634  0.26236  1.09861  0.40547
+     45   0.13346  3.44645  2.84474  3.35445     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01790  4.03191        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_forty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:57:43 2012
+NSEQ  11
+EFFN  3.327393
+CKSUM 695266694
+STATS LOCAL MSV       -8.0825  0.71933
+STATS LOCAL VITERBI   -7.7536  0.71933
+STATS LOCAL FORWARD   -4.0569  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81021  1.37900  1.19427  1.26719
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  0.00000        *
+      1   2.94858  3.58928  0.11699  3.49411      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+      2   3.43485  0.13000  3.48423  2.83026      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+      3   2.94858  3.58928  0.11699  3.49411      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+      4   3.43485  0.13000  3.48423  2.83026      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+      5   3.43485  0.13000  3.48423  2.83026      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+      6   3.43485  0.13000  3.48423  2.83026      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+      7   3.43485  0.13000  3.48423  2.83026      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+      8   3.09013  2.59611  3.13823  0.17843      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+      9   3.09013  2.59611  3.13823  0.17843      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     10   2.94858  3.58928  0.11699  3.49411     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     11   2.94858  3.58928  0.11699  3.49411     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     12   3.09013  2.59611  3.13823  0.17843     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     13   0.14170  3.38177  2.80290  3.28358     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     14   3.09013  2.59611  3.13823  0.17843     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     15   3.09013  2.59611  3.13823  0.17843     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     16   3.43485  0.13000  3.48423  2.83026     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     17   3.43485  0.13000  3.48423  2.83026     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     18   2.94858  3.58928  0.11699  3.49411     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     19   0.14170  3.38177  2.80290  3.28358     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     20   2.94858  3.58928  0.11699  3.49411     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     21   2.94858  3.58928  0.11699  3.49411     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     22   2.94858  3.58928  0.11699  3.49411     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     23   2.94858  3.58928  0.11699  3.49411     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     24   3.43485  0.13000  3.48423  2.83026     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     25   0.14170  3.38177  2.80290  3.28358     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     26   3.09013  2.59611  3.13823  0.17843     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     27   2.94858  3.58928  0.11699  3.49411     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     28   3.43485  0.13000  3.48423  2.83026     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     29   3.43485  0.13000  3.48423  2.83026     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     30   3.09013  2.59611  3.13823  0.17843     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     31   2.94858  3.58928  0.11699  3.49411     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     32   3.09013  2.59611  3.13823  0.17843     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     33   3.09013  2.59611  3.13823  0.17843     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     34   3.09013  2.59611  3.13823  0.17843     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     35   2.94858  3.58928  0.11699  3.49411     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     36   0.14170  3.38177  2.80290  3.28358     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     37   2.94858  3.58928  0.11699  3.49411     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     38   3.09013  2.59611  3.13823  0.17843     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     39   2.94858  3.58928  0.11699  3.49411     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     40   3.09013  2.59611  3.13823  0.17843     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     41   3.43485  0.13000  3.48423  2.83026     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     42   0.14170  3.38177  2.80290  3.28358     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     43   3.09013  2.59611  3.13823  0.17843     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     44   1.74282  2.26541  2.43923  0.45577     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     45   0.14170  3.38177  2.80290  3.28358     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01860  3.99404        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fortyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:59:54 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2333109231
+STATS LOCAL MSV       -8.0117  0.72056
+STATS LOCAL VITERBI   -7.6901  0.72056
+STATS LOCAL FORWARD   -4.1581  0.72056
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.80981  1.37298  1.32209  1.15078
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   3.30705  0.14631  3.36166  2.73626     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.97980  2.52563  3.03204  0.19727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fortyfivea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:58:56 2012
+NSEQ  4
+EFFN  3.339844
+CKSUM 628225450
+STATS LOCAL MSV       -8.0851  0.71931
+STATS LOCAL VITERBI   -7.7586  0.71931
+STATS LOCAL FORWARD   -4.0151  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93398  1.36716  1.19656  1.20943
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  0.00000        *
+      1   2.95135  3.59331  0.11655  3.49856      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      2   3.43942  0.12946  3.48861  2.83359      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      3   2.95135  3.59331  0.11655  3.49856      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      4   3.43942  0.12946  3.48861  2.83359      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      5   3.43942  0.12946  3.48861  2.83359      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      6   3.43942  0.12946  3.48861  2.83359      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      7   3.43942  0.12946  3.48861  2.83359      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      8   3.09414  2.59866  3.14209  0.17779      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      9   2.60190  1.56681  2.66737  0.43429      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     10   2.95135  3.59331  0.11655  3.49856     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     11   2.95135  3.59331  0.11655  3.49856     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     12   3.09414  2.59866  3.14209  0.17779     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     13   0.14117  3.38574  2.80548  3.28793     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     14   3.09414  2.59866  3.14209  0.17779     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     15   3.09414  2.59866  3.14209  0.17779     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     16   3.43942  0.12946  3.48861  2.83359     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     17   3.43942  0.12946  3.48861  2.83359     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     18   2.95135  3.59331  0.11655  3.49856     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     19   0.14117  3.38574  2.80548  3.28793     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     20   2.95135  3.59331  0.11655  3.49856     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     21   2.95135  3.59331  0.11655  3.49856     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     22   2.95135  3.59331  0.11655  3.49856     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     23   2.95135  3.59331  0.11655  3.49856     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     24   3.43942  0.12946  3.48861  2.83359     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     25   0.14117  3.38574  2.80548  3.28793     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     26   3.09414  2.59866  3.14209  0.17779     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     27   2.95135  3.59331  0.11655  3.49856     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     28   3.43942  0.12946  3.48861  2.83359     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     29   3.43942  0.12946  3.48861  2.83359     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     30   3.09414  2.59866  3.14209  0.17779     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     31   2.95135  3.59331  0.11655  3.49856     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     32   3.09414  2.59866  3.14209  0.17779     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     33   3.09414  2.59866  3.14209  0.17779     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     34   3.09414  2.59866  3.14209  0.17779     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     35   2.95135  3.59331  0.11655  3.49856     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     36   0.14117  3.38574  2.80548  3.28793     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     37   2.95135  3.59331  0.11655  3.49856     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     38   3.09414  2.59866  3.14209  0.17779     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     39   2.95135  3.59331  0.11655  3.49856     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     40   3.09414  2.59866  3.14209  0.17779     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     41   3.43942  0.12946  3.48861  2.83359     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     42   0.14117  3.38574  2.80548  3.28793     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     43   3.09414  2.59866  3.14209  0.17779     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     44   3.09414  2.59866  3.14209  0.17779     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     45   3.09414  2.59866  3.14209  0.17779     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01855  3.99634        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fortyfiveb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:59:07 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3206328775
+STATS LOCAL MSV       -7.4469  0.72804
+STATS LOCAL VITERBI   -8.2249  0.72804
+STATS LOCAL FORWARD   -3.6506  0.72804
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66019  1.45155  1.21279  1.27898
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fortyfivec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:59:14 2012
+NSEQ  5
+EFFN  3.442383
+CKSUM 2359152773
+STATS LOCAL MSV       -7.4894  0.71932
+STATS LOCAL VITERBI   -7.8319  0.71932
+STATS LOCAL FORWARD   -3.8690  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.89797  1.25101  1.15079  1.39625
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  0.00000        *
+      1   2.97356  3.62574  0.11309  3.53438      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      2   3.47635  0.12517  3.52395  2.86037      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      3   2.97356  3.62574  0.11309  3.53438      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      4   3.47635  0.12517  3.52395  2.86037      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      5   3.12669  2.61934  3.17338  0.17266      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      6   3.47635  0.12517  3.52395  2.86037      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      7   3.47635  0.12517  3.52395  2.86037      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      8   3.12669  2.61934  3.17338  0.17266      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      9   3.47635  0.12517  3.52395  2.86037      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     10   2.97356  3.62574  0.11309  3.53438     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     11   2.97356  3.62574  0.11309  3.53438     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     12   3.12669  2.61934  3.17338  0.17266     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     13   0.13703  3.41783  2.82627  3.32308     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     14   3.12669  2.61934  3.17338  0.17266     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     15   3.12669  2.61934  3.17338  0.17266     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     16   3.47635  0.12517  3.52395  2.86037     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     17   3.47635  0.12517  3.52395  2.86037     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     18   2.97356  3.62574  0.11309  3.53438     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     19   0.13703  3.41783  2.82627  3.32308     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     20   2.97356  3.62574  0.11309  3.53438     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     21   2.97356  3.62574  0.11309  3.53438     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     22   0.13703  3.41783  2.82627  3.32308     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     23   2.97356  3.62574  0.11309  3.53438     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     24   3.47635  0.12517  3.52395  2.86037     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     25   0.13703  3.41783  2.82627  3.32308     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     26   3.12669  2.61934  3.17338  0.17266     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     27   2.97356  3.62574  0.11309  3.53438     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     28   3.47635  0.12517  3.52395  2.86037     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     29   3.47635  0.12517  3.52395  2.86037     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     30   3.12669  2.61934  3.17338  0.17266     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     31   2.97356  3.62574  0.11309  3.53438     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     32   3.12669  2.61934  3.17338  0.17266     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     33   3.47635  0.12517  3.52395  2.86037     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     34   3.12669  2.61934  3.17338  0.17266     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     35   2.97356  3.62574  0.11309  3.53438     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     36   0.13703  3.41783  2.82627  3.32308     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     37   2.97356  3.62574  0.11309  3.53438     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     38   3.47635  0.12517  3.52395  2.86037     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     39   2.97356  3.62574  0.11309  3.53438     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     40   3.12669  2.61934  3.17338  0.17266     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     41   3.47635  0.12517  3.52395  2.86037     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     42   3.12669  2.61934  3.17338  0.17266     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     43   2.14202  2.15832  1.20639  0.75974     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     44   2.97356  3.62574  0.11309  3.53438     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     45   1.13214  2.58592  0.66292  2.44201     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01821  4.01501        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fortyfived_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:59:20 2012
+NSEQ  237
+EFFN  4.343216
+CKSUM 1406720538
+STATS LOCAL MSV       -7.1463  0.71933
+STATS LOCAL VITERBI   -7.6347  0.71933
+STATS LOCAL FORWARD   -4.1955  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82086  1.40125  1.21727  1.21811
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  0.00000        *
+      1   3.13300  3.86151  0.09111  3.79598      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+      2   3.74895  0.09809  3.78408  3.05426      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+      3   3.00887  3.81913  0.09960  3.75029      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+      4   3.74895  0.09809  3.78408  3.05426      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+      5   3.26041  2.45402  3.30291  0.17566      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+      6   3.74895  0.09809  3.78408  3.05426      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+      7   3.58538  0.12986  3.62786  2.69593      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+      8   3.07910  2.55111  3.25758  0.17731      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+      9   2.97155  1.84019  3.02700  0.29904      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     10   3.13300  3.86151  0.09111  3.79598     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     11   3.05937  3.69704  0.11322  3.34288     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     12   3.14091  2.64393  3.30396  0.16377     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     13   0.16429  3.45399  2.46122  3.36524     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     14   2.89131  2.31177  3.11591  0.22180     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     15   3.37835  2.77920  3.41516  0.13819     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     16   3.74895  0.09809  3.78408  3.05426     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     17   3.74895  0.09809  3.78408  3.05426     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     18   2.70375  3.69075  0.12665  3.60999     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     19   0.15792  3.40368  2.70862  3.07468     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     20   2.59264  3.46092  0.16187  3.14123     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     21   3.13300  3.86151  0.09111  3.79598     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     22   0.15669  3.26950  2.63689  3.34050     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     23   3.13300  3.86151  0.09111  3.79598     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     24   3.69541  0.10804  3.73291  2.92530     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     25   0.11007  3.65796  2.98073  3.58691     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     26   3.33869  2.66189  3.37735  0.15017     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     27   3.13300  3.86151  0.09111  3.79598     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     28   3.74895  0.09809  3.78408  3.05426     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     29   3.74895  0.09809  3.78408  3.05426     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     30   3.37835  2.77920  3.41516  0.13819     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     31   3.13300  3.86151  0.09111  3.79598     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     32   3.37835  2.77920  3.41516  0.13819     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     33   3.26363  2.46207  3.30597  0.17456     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     34   3.31871  2.60619  3.35834  0.15643     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     35   3.13300  3.86151  0.09111  3.79598     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     36   0.11007  3.65796  2.98073  3.58691     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     37   3.13300  3.86151  0.09111  3.79598     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     38   3.15847  2.21629  3.20584  0.21323     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     39   2.97835  3.80788  0.10189  3.73805     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     40   3.37835  2.77920  3.41516  0.13819     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     41   3.69022  0.10903  3.72796  2.91353     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     42   0.24784  2.84456  2.25029  2.88269     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     43   2.35553  2.22018  2.09188  0.39584     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     44   2.19479  1.49182  2.25461  0.58207     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03104  4.18101  4.18101  1.46634  0.26236  1.09861  0.40547
+     45   1.24696  2.09307  1.09101  1.37263     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01564  4.16561        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fortyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:58:34 2012
+NSEQ  5
+EFFN  3.706055
+CKSUM 2367162579
+STATS LOCAL MSV       -7.0831  0.71933
+STATS LOCAL VITERBI   -7.6331  0.71933
+STATS LOCAL FORWARD   -4.0281  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.69348  1.53610  1.27583  1.13412
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  0.00000        *
+      1   3.56534  0.11549  3.60901  2.92432      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+      2   3.02632  3.70335  0.10526  3.62032      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+      3   3.56534  0.11549  3.60901  2.92432      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+      4   3.20650  2.66995  3.25008  0.16079      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+      5   3.56534  0.11549  3.60901  2.92432      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+      6   3.20650  2.66995  3.25008  0.16079      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+      7   2.49931  0.72471  2.57096  1.03020      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+      8   3.20650  2.66995  3.25008  0.16079      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+      9   0.12757  3.49551  2.87632  3.40830      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     10   3.02632  3.70335  0.10526  3.62032     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     11   3.20650  2.66995  3.25008  0.16079     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     12   2.51864  1.18254  2.58793  0.62035     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     13   0.12757  3.49551  2.87632  3.40830     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     14   3.20650  2.66995  3.25008  0.16079     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     15   3.20650  2.66995  3.25008  0.16079     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     16   3.56534  0.11549  3.60901  2.92432     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     17   3.20650  2.66995  3.25008  0.16079     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     18   3.02632  3.70335  0.10526  3.62032     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     19   1.12884  2.63120  0.65089  2.48870     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     20   0.12757  3.49551  2.87632  3.40830     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     21   3.02632  3.70335  0.10526  3.62032     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     22   0.12757  3.49551  2.87632  3.40830     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     23   3.02632  3.70335  0.10526  3.62032     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     24   3.56534  0.11549  3.60901  2.92432     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     25   0.12757  3.49551  2.87632  3.40830     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     26   3.20650  2.66995  3.25008  0.16079     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     27   3.02632  3.70335  0.10526  3.62032     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     28   3.56534  0.11549  3.60901  2.92432     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     29   3.20650  2.66995  3.25008  0.16079     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     30   3.20650  2.66995  3.25008  0.16079     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     31   3.02632  3.70335  0.10526  3.62032     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     32   3.20650  2.66995  3.25008  0.16079     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     33   3.20650  2.66995  3.25008  0.16079     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     34   3.20650  2.66995  3.25008  0.16079     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     35   3.02632  3.70335  0.10526  3.62032     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     36   0.12757  3.49551  2.87632  3.40830     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     37   3.02632  3.70335  0.10526  3.62032     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     38   3.20650  2.66995  3.25008  0.16079     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     39   3.02632  3.70335  0.10526  3.62032     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     40   3.20650  2.66995  3.25008  0.16079     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     41   3.56534  0.11549  3.60901  2.92432     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     42   3.02632  3.70335  0.10526  3.62032     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     43   3.56534  0.11549  3.60901  2.92432     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     44   3.02632  3.70335  0.10526  3.62032     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03445  4.07856  4.07856  1.46634  0.26236  1.09861  0.40547
+     45   0.12757  3.49551  2.87632  3.40830     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01737  4.06149        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fortynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:00:11 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3905070046
+STATS LOCAL MSV       -7.3577  0.72818
+STATS LOCAL VITERBI   -8.3397  0.72818
+STATS LOCAL FORWARD   -3.7433  0.72818
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45948  1.39088  1.37523  1.32425
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fortyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:57:51 2012
+NSEQ  114
+EFFN  3.816467
+CKSUM 4093321362
+STATS LOCAL MSV       -7.3279  0.71933
+STATS LOCAL VITERBI   -7.6194  0.71933
+STATS LOCAL FORWARD   -4.0794  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.84227  1.42693  1.13304  1.27495
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  0.00000        *
+      1   3.04674  3.73356  0.10238  3.65383      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+      2   3.60020  0.11193  3.64228  2.94916      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+      3   2.86625  3.65924  0.11731  3.57469      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+      4   3.60020  0.11193  3.64228  2.94916      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04199  4.09709  3.70919  1.46634  0.26236  1.09861  0.40547
+      5   2.85101  1.85702  2.90918  0.31258      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08918  4.08918  1.46634  0.26236  0.85738  0.55212
+      6   3.50961  0.12985  3.55506  2.76011      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+      7   3.49787  0.13228  3.54377  2.73735      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+      8   3.23832  2.69012  3.28066  0.15631      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+      9   2.98382  2.09614  3.03694  0.25040      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     10   3.04674  3.73356  0.10238  3.65383     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     11   3.04674  3.73356  0.10238  3.65383     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     12   2.49295  1.97733  2.76597  0.33410     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     13   0.12406  3.52609  2.89596  3.44190     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     14   2.77946  2.61153  3.08419  0.19999     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     15   3.23832  2.69012  3.28066  0.15631     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     16   3.52346  0.12702  3.56837  2.78741     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     17   3.60020  0.11193  3.64228  2.94916     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     18   3.04674  3.73356  0.10238  3.65383     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     19   0.12406  3.52609  2.89596  3.44190     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     20   3.04674  3.73356  0.10238  3.65383     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     21   3.04674  3.73356  0.10238  3.65383     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     22   0.19858  3.26107  2.31025  3.15768     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     23   3.04674  3.73356  0.10238  3.65383     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     24   3.46008  0.14032  3.50742  2.66615     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     25   0.12406  3.52609  2.89596  3.44190     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     26   3.19075  2.56329  3.23500  0.17144     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     27   2.88953  3.66950  0.11520  3.58570     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     28   3.60020  0.11193  3.64228  2.94916     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     29   3.60020  0.11193  3.64228  2.94916     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     30   3.23832  2.69012  3.28066  0.15631     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     31   3.04674  3.73356  0.10238  3.65383     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     32   3.23832  2.69012  3.28066  0.15631     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     33   3.13026  2.41511  3.17713  0.19209     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     34   3.23832  2.69012  3.28066  0.15631     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     35   3.04674  3.73356  0.10238  3.65383     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     36   0.12406  3.52609  2.89596  3.44190     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     37   2.96364  3.55624  0.12756  3.22935     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     38   2.40425  2.32499  2.82843  0.28399     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     39   3.04674  3.73356  0.10238  3.65383     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     40   3.13575  2.42806  3.18238  0.19015     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     41   3.60020  0.11193  3.64228  2.94916     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     42   2.41976  3.42442  0.17150  3.32179     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     43   3.13398  2.42388  3.18069  0.19077     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     44   2.88166  3.40579  0.12806  3.47437     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03381  4.09709  4.09709  1.46634  0.26236  1.09861  0.40547
+     45   0.35392  2.58103  2.40647  2.02315     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01705  4.08033        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fortyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:59:40 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 905611248
+STATS LOCAL MSV       -7.4613  0.72901
+STATS LOCAL VITERBI   -8.2183  0.72901
+STATS LOCAL FORWARD   -3.4166  0.72901
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.65473  1.62821  1.37318  1.02367
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fortysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:59:31 2012
+NSEQ  5
+EFFN  3.432617
+CKSUM 522699309
+STATS LOCAL MSV       -7.3872  0.71931
+STATS LOCAL VITERBI   -7.7485  0.71931
+STATS LOCAL FORWARD   -4.0809  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81895  1.59853  1.21075  1.08579
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  0.00000        *
+      1   2.97148  3.62270  0.11341  3.53103      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+      2   3.47289  0.12556  3.52064  2.85787      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+      3   0.13742  3.41482  2.82432  3.31978      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+      4   3.47289  0.12556  3.52064  2.85787      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+      5   3.12363  2.61740  3.17044  0.17313      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+      6   3.12363  2.61740  3.17044  0.17313      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+      7   2.97148  3.62270  0.11341  3.53103      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+      8   2.97148  3.62270  0.11341  3.53103      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+      9   3.12363  2.61740  3.17044  0.17313      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     10   2.97148  3.62270  0.11341  3.53103     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     11   2.97148  3.62270  0.11341  3.53103     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     12   3.12363  2.61740  3.17044  0.17313     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     13   0.13742  3.41482  2.82432  3.31978     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     14   3.12363  2.61740  3.17044  0.17313     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     15   3.12363  2.61740  3.17044  0.17313     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     16   3.47289  0.12556  3.52064  2.85787     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     17   3.47289  0.12556  3.52064  2.85787     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     18   2.97148  3.62270  0.11341  3.53103     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     19   3.47289  0.12556  3.52064  2.85787     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     20   3.47289  0.12556  3.52064  2.85787     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     21   0.13742  3.41482  2.82432  3.31978     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     22   0.13742  3.41482  2.82432  3.31978     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     23   2.97148  3.62270  0.11341  3.53103     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     24   3.12363  2.61740  3.17044  0.17313     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     25   0.13742  3.41482  2.82432  3.31978     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     26   3.12363  2.61740  3.17044  0.17313     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     27   2.97148  3.62270  0.11341  3.53103     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     28   3.47289  0.12556  3.52064  2.85787     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     29   3.12363  2.61740  3.17044  0.17313     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     30   3.12363  2.61740  3.17044  0.17313     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     31   2.97148  3.62270  0.11341  3.53103     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     32   3.12363  2.61740  3.17044  0.17313     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     33   3.12363  2.61740  3.17044  0.17313     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     34   3.12363  2.61740  3.17044  0.17313     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     35   2.97148  3.62270  0.11341  3.53103     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     36   0.13742  3.41482  2.82432  3.31978     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     37   2.97148  3.62270  0.11341  3.53103     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     38   3.12363  2.61740  3.17044  0.17313     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     39   2.97148  3.62270  0.11341  3.53103     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     40   3.12363  2.61740  3.17044  0.17313     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     41   3.47289  0.12556  3.52064  2.85787     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     42   3.12363  2.61740  3.17044  0.17313     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     43   2.35654  2.56629  0.41889  1.76812     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     44   3.12363  2.61740  3.17044  0.17313     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     45   2.97148  3.62270  0.11341  3.53103     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01824  4.01325        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fortythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:58:24 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 528169609
+STATS LOCAL MSV       -7.5878  0.72793
+STATS LOCAL VITERBI   -8.4387  0.72793
+STATS LOCAL FORWARD   -3.3910  0.72793
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92254  1.12847  1.17052  1.51399
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.15554  1.00938  2.23102  0.88601      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fortytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:57:59 2012
+NSEQ  4
+EFFN  3.402344
+CKSUM 3056681829
+STATS LOCAL MSV       -7.1674  0.71931
+STATS LOCAL VITERBI   -7.7681  0.71931
+STATS LOCAL FORWARD   -4.4347  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82368  1.50734  1.25418  1.10334
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  0.00000        *
+      1   3.11409  2.61134  3.16126  0.17462      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      2   2.96500  3.61323  0.11441  3.52056      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      3   3.46209  0.12680  3.51031  2.85005      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      4   3.11409  2.61134  3.16126  0.17462      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      5   3.46209  0.12680  3.51031  2.85005      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      6   3.46209  0.12680  3.51031  2.85005      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      7   3.11409  2.61134  3.16126  0.17462      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      8   3.11409  2.61134  3.16126  0.17462      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      9   2.96500  3.61323  0.11441  3.52056      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     10   2.96500  3.61323  0.11441  3.52056     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     11   2.96500  3.61323  0.11441  3.52056     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     12   3.11409  2.61134  3.16126  0.17462     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     13   2.61679  1.56804  2.68196  0.43066     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     14   0.13862  3.40543  2.81825  3.30949     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     15   3.46209  0.12680  3.51031  2.85005     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     16   3.46209  0.12680  3.51031  2.85005     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     17   3.11409  2.61134  3.16126  0.17462     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     18   0.13862  3.40543  2.81825  3.30949     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     19   3.11409  2.61134  3.16126  0.17462     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     20   2.96500  3.61323  0.11441  3.52056     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     21   2.96500  3.61323  0.11441  3.52056     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     22   0.13862  3.40543  2.81825  3.30949     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     23   2.96500  3.61323  0.11441  3.52056     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     24   3.46209  0.12680  3.51031  2.85005     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     25   0.13862  3.40543  2.81825  3.30949     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     26   3.11409  2.61134  3.16126  0.17462     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     27   2.96500  3.61323  0.11441  3.52056     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     28   3.46209  0.12680  3.51031  2.85005     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     29   3.46209  0.12680  3.51031  2.85005     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     30   3.11409  2.61134  3.16126  0.17462     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     31   2.96500  3.61323  0.11441  3.52056     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     32   3.11409  2.61134  3.16126  0.17462     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     33   3.11409  2.61134  3.16126  0.17462     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     34   3.11409  2.61134  3.16126  0.17462     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     35   2.96500  3.61323  0.11441  3.52056     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     36   0.13862  3.40543  2.81825  3.30949     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     37   2.96500  3.61323  0.11441  3.52056     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     38   3.11409  2.61134  3.16126  0.17462     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     39   2.96500  3.61323  0.11441  3.52056     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     40   3.11409  2.61134  3.16126  0.17462     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     41   3.46209  0.12680  3.51031  2.85005     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     42   0.13862  3.40543  2.81825  3.30949     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     43   3.11409  2.61134  3.16126  0.17462     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     44   2.96500  3.61323  0.11441  3.52056     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     45   3.11409  2.61134  3.16126  0.17462     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01834  4.00776        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_foura_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:45:37 2012
+NSEQ  401
+EFFN  6.335991
+CKSUM 1616265713
+STATS LOCAL MSV       -6.6662  0.71932
+STATS LOCAL VITERBI   -7.7272  0.71932
+STATS LOCAL FORWARD   -4.1740  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.85227  1.27715  1.25943  1.27128
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  0.00000        *
+      1   3.35863  4.18442  0.06799  4.15287      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+      2   4.12655  0.07047  4.14418  3.32280      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+      3   2.88761  4.06444  0.09525  4.01882      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+      4   4.12655  0.07047  4.14418  3.32280      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+      5   4.01577  0.09372  4.04050  2.92167      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+      6   3.81002  0.13885  3.84658  2.45175      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+      7   0.97552  1.85015  1.43386  1.48102      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+      8   2.84789  1.28575  2.74126  0.50899      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+      9   3.21019  1.55931  3.26306  0.34094      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     10   0.44754  3.13787  1.31527  3.01539     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     11   3.35863  4.18442  0.06799  4.15287     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     12   3.34079  1.79332  3.38771  0.26867     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     13   0.08022  4.00886  3.21676  3.97120     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     14   3.03263  2.27231  3.13698  0.21651     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     15   3.73510  2.86704  3.75942  0.10985     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     16   4.12655  0.07047  4.14418  3.32280     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     17   3.04926  1.28375  3.10866  0.46053     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     18   1.00485  2.87612  0.67686  2.66876     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     19   1.76285  2.70264  0.39893  2.40376     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     20   1.52951  1.43029  1.84828  0.95034     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     21   2.53311  3.95443  0.12666  3.89293     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     22   3.01957  4.11694  0.08565  4.07661     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     23   3.35863  4.18442  0.06799  4.15287     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     24   3.88673  0.11089  3.71524  2.81166     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02508  4.44688  4.33899  1.46634  0.26236  1.09861  0.40547
+     25   0.09132  3.66353  3.19121  3.88696     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02374  4.44554  4.44554  1.46634  0.26236  1.02800  0.44274
+     26   3.74065  2.89065  3.76462  0.10809     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     27   3.15299  4.14692  0.07789  4.11067     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     28   4.12655  0.07047  4.14418  3.32280     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     29   4.08773  0.07863  4.10785  3.16060     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     30   3.73164  2.85257  3.75619  0.11096     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     31   2.57812  3.97378  0.12179  3.91464     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     32   3.77374  3.04121  3.79557  0.09785     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     33   3.43589  1.98554  3.47803  0.22361     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     34   4.08928  0.07831  4.10931  3.16655     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     35   3.28921  3.62754  0.09103  3.76610     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     36   0.09824  3.89102  3.17571  3.46158     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     37   3.35863  4.18442  0.06799  4.15287     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     38   3.97412  0.09467  3.79725  3.01398     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     39   3.35863  4.18442  0.06799  4.15287     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     40   3.73533  2.86803  3.75964  0.10978     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     41   4.12655  0.07047  4.14418  3.32280     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     42   0.09241  3.96785  3.00350  3.92518     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     43   3.71035  2.76693  3.73629  0.11785     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     44   3.31793  2.54031  3.57427  0.15444     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02371  4.44688  4.44688  1.46634  0.26236  1.09861  0.40547
+     45   1.28162  2.43337  2.32598  0.62179     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01192  4.43509        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fourb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:45:46 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4155459657
+STATS LOCAL MSV       -7.6825  0.72815
+STATS LOCAL VITERBI   -8.4704  0.72815
+STATS LOCAL FORWARD   -3.4801  0.72815
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.88707  1.17400  1.16732  1.47773
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   1.01448  1.11006  1.95471  1.79419     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fourteena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:48:05 2012
+NSEQ  5
+EFFN  3.442383
+CKSUM 1670456327
+STATS LOCAL MSV       -7.3397  0.71933
+STATS LOCAL VITERBI   -7.6574  0.71933
+STATS LOCAL FORWARD   -4.1134  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.69613  1.28590  1.21959  1.40709
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  0.00000        *
+      1   2.97356  3.62574  0.11309  3.53438      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      2   3.47635  0.12517  3.52395  2.86037      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      3   2.97356  3.62574  0.11309  3.53438      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      4   3.47635  0.12517  3.52395  2.86037      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      5   3.47635  0.12517  3.52395  2.86037      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      6   3.47635  0.12517  3.52395  2.86037      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      7   3.12669  2.61934  3.17338  0.17266      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      8   2.45295  0.73643  2.52520  1.03536      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      9   3.12669  2.61934  3.17338  0.17266      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     10   2.97356  3.62574  0.11309  3.53438     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     11   2.97356  3.62574  0.11309  3.53438     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     12   3.12669  2.61934  3.17338  0.17266     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     13   0.13703  3.41783  2.82627  3.32308     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     14   3.12669  2.61934  3.17338  0.17266     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     15   3.12669  2.61934  3.17338  0.17266     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     16   3.47635  0.12517  3.52395  2.86037     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     17   3.47635  0.12517  3.52395  2.86037     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     18   2.97356  3.62574  0.11309  3.53438     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     19   1.13214  2.58592  0.66292  2.44201     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     20   0.13703  3.41783  2.82627  3.32308     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     21   2.97356  3.62574  0.11309  3.53438     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     22   2.97356  3.62574  0.11309  3.53438     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     23   2.97356  3.62574  0.11309  3.53438     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     24   3.47635  0.12517  3.52395  2.86037     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     25   0.13703  3.41783  2.82627  3.32308     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     26   3.12669  2.61934  3.17338  0.17266     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     27   2.97356  3.62574  0.11309  3.53438     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     28   3.47635  0.12517  3.52395  2.86037     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     29   3.47635  0.12517  3.52395  2.86037     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     30   3.12669  2.61934  3.17338  0.17266     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     31   2.97356  3.62574  0.11309  3.53438     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     32   3.12669  2.61934  3.17338  0.17266     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     33   3.47635  0.12517  3.52395  2.86037     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     34   3.12669  2.61934  3.17338  0.17266     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     35   2.97356  3.62574  0.11309  3.53438     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     36   0.13703  3.41783  2.82627  3.32308     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     37   2.97356  3.62574  0.11309  3.53438     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     38   3.47635  0.12517  3.52395  2.86037     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     39   2.97356  3.62574  0.11309  3.53438     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     40   3.12669  2.61934  3.17338  0.17266     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     41   3.47635  0.12517  3.52395  2.86037     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     42   0.13703  3.41783  2.82627  3.32308     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     43   0.13703  3.41783  2.82627  3.32308     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     44   3.12669  2.61934  3.17338  0.17266     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     45   0.13703  3.41783  2.82627  3.32308     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01821  4.01501        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_fourteenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:48:13 2012
+NSEQ  136
+EFFN  6.661377
+CKSUM 3498924441
+STATS LOCAL MSV       -6.8627  0.71932
+STATS LOCAL VITERBI   -7.6122  0.71932
+STATS LOCAL FORWARD   -4.1891  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.88747  1.31457  1.23606  1.23984
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  0.00000        *
+      1   3.38680  4.22210  0.06568  4.19392      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+      2   4.17003  0.06782  4.18585  3.35501      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+      3   2.25794  3.86541  0.16026  3.79165      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+      4   4.17003  0.06782  4.18585  3.35501      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+      5   3.89517  0.12843  3.92817  2.51941      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+      6   3.15443  0.40495  3.21632  1.38540      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+      7   2.56668  1.30992  2.57154  0.55000      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+      8   2.03249  1.12973  1.94624  0.90867      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+      9   3.17124  1.99262  2.81252  0.27226      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     10   2.80398  4.09874  0.09929  4.05359     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     11   3.38680  4.22210  0.06568  4.19392     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     12   3.67603  2.47625  3.70587  0.14382     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     13   0.07718  4.05139  3.24746  4.01727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     14   3.78219  2.87688  3.80507  0.10685     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     15   3.82368  3.07628  3.84379  0.09364     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     16   4.17003  0.06782  4.18585  3.35501     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     17   3.99951  0.10506  4.02641  2.75568     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02873  4.48429  4.07231  1.46634  0.26236  1.09861  0.40547
+     18   0.66154  2.67714  1.05690  2.69334     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02296  4.47852  4.47852  1.46634  0.26236  0.84358  0.56241
+     19   1.81129  2.07222  0.53899  2.06108     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     20   0.74476  2.47584  1.05075  2.39270     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     21   1.61301  3.40920  0.31383  3.29679     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     22   2.57911  4.02068  0.11963  3.96518     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     23   3.38680  4.22210  0.06568  4.19392     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     24   3.69828  0.17693  3.74126  2.17443     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     25   0.07718  4.05139  3.24746  4.01727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     26   3.47691  1.95472  3.51832  0.22584     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     27   2.33371  3.90720  0.14916  3.83805     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     28   4.17003  0.06782  4.18585  3.35501     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     29   4.05797  0.09229  4.08120  2.91898     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     30   3.82368  3.07628  3.84379  0.09364     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     31   3.38680  4.22210  0.06568  4.19392     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     32   3.82368  3.07628  3.84379  0.09364     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     33   3.69533  2.54030  3.72394  0.13676     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     34   3.27474  1.57116  3.32598  0.33068     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     35   3.38680  4.22210  0.06568  4.19392     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     36   0.07718  4.05139  3.24746  4.01727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     37   3.38680  4.22210  0.06568  4.19392     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     38   3.56830  0.08643  4.04779  3.29307     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     39   3.38680  4.22210  0.06568  4.19392     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     40   3.47691  1.95472  3.51832  0.22584     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     41   4.06558  0.08095  3.72281  3.31199     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     42   0.09467  3.99534  2.94229  3.95393     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     43   3.63489  3.01641  3.15558  0.12554     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     44   3.31282  2.73159  3.65261  0.13634     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02283  4.48429  4.48429  1.46634  0.26236  1.09861  0.40547
+     45   1.57980  2.38712  2.18055  0.52914     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01148  4.47294        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:46:38 2012
+NSEQ  12
+EFFN  3.495117
+CKSUM 2912909677
+STATS LOCAL MSV       -7.2906  0.71932
+STATS LOCAL VITERBI   -7.8807  0.71932
+STATS LOCAL FORWARD   -3.9592  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.94391  1.18493  1.17611  1.41628
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  0.00000        *
+      1   2.98459  3.64191  0.11140  3.55227      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+      2   3.49482  0.12308  3.54162  2.87371      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+      3   2.98459  3.64191  0.11140  3.55227      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+      4   3.49482  0.12308  3.54162  2.87371      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+      5   3.49482  0.12308  3.54162  2.87371      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+      6   3.49482  0.12308  3.54162  2.87371      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+      7   2.98459  3.64191  0.11140  3.55227      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+      8   3.49482  0.12308  3.54162  2.87371      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+      9   3.14310  2.62975  3.18915  0.17014      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     10   2.98459  3.64191  0.11140  3.55227     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     11   2.98459  3.64191  0.11140  3.55227     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     12   0.82494  2.19657  2.18333  1.08504     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     13   0.13501  3.43391  2.83666  3.34071     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     14   3.14310  2.62975  3.18915  0.17014     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     15   3.14310  2.62975  3.18915  0.17014     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     16   3.49482  0.12308  3.54162  2.87371     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     17   3.49482  0.12308  3.54162  2.87371     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     18   0.66288  2.57492  1.13742  2.43235     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     19   2.98459  3.64191  0.11140  3.55227     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     20   3.49482  0.12308  3.54162  2.87371     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     21   2.98459  3.64191  0.11140  3.55227     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     22   2.98459  3.64191  0.11140  3.55227     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     23   2.98459  3.64191  0.11140  3.55227     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     24   3.49482  0.12308  3.54162  2.87371     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     25   0.13501  3.43391  2.83666  3.34071     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     26   3.14310  2.62975  3.18915  0.17014     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     27   2.98459  3.64191  0.11140  3.55227     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     28   3.49482  0.12308  3.54162  2.87371     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     29   3.49482  0.12308  3.54162  2.87371     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     30   2.76573  1.81685  2.82615  0.33506     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     31   2.98459  3.64191  0.11140  3.55227     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     32   3.14310  2.62975  3.18915  0.17014     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     33   3.14310  2.62975  3.18915  0.17014     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     34   3.49482  0.12308  3.54162  2.87371     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     35   2.98459  3.64191  0.11140  3.55227     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     36   0.13501  3.43391  2.83666  3.34071     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     37   2.98459  3.64191  0.11140  3.55227     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     38   3.49482  0.12308  3.54162  2.87371     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     39   2.98459  3.64191  0.11140  3.55227     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     40   3.14310  2.62975  3.18915  0.17014     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     41   3.49482  0.12308  3.54162  2.87371     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     42   0.13501  3.43391  2.83666  3.34071     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     43   3.14310  2.62975  3.18915  0.17014     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     44   3.14310  2.62975  3.18915  0.17014     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     45   3.14310  2.62975  3.18915  0.17014     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01803  4.02448        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_nineteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:49:22 2012
+NSEQ  4
+EFFN  3.316406
+CKSUM 1909354714
+STATS LOCAL MSV       -8.1253  0.71932
+STATS LOCAL VITERBI   -7.6550  0.71932
+STATS LOCAL FORWARD   -4.2395  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.91627  1.25412  1.19820  1.32508
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  0.00000        *
+      1   3.08658  2.59385  3.13481  0.17900      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+      2   3.08658  2.59385  3.13481  0.17900      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+      3   2.94613  3.58571  0.11738  3.49017      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+      4   3.43079  0.13048  3.48035  2.82731      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+      5   2.94613  3.58571  0.11738  3.49017      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+      6   3.43079  0.13048  3.48035  2.82731      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+      7   3.43079  0.13048  3.48035  2.82731      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+      8   3.08658  2.59385  3.13481  0.17900      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+      9   3.43079  0.13048  3.48035  2.82731      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     10   3.43079  0.13048  3.48035  2.82731     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     11   2.94613  3.58571  0.11738  3.49017     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     12   2.94613  3.58571  0.11738  3.49017     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     13   3.08658  2.59385  3.13481  0.17900     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     14   0.14216  3.37825  2.80062  3.27973     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     15   2.94613  3.58571  0.11738  3.49017     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     16   3.43079  0.13048  3.48035  2.82731     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     17   3.08658  2.59385  3.13481  0.17900     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     18   3.43079  0.13048  3.48035  2.82731     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     19   2.94613  3.58571  0.11738  3.49017     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     20   2.94613  3.58571  0.11738  3.49017     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     21   0.14216  3.37825  2.80062  3.27973     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     22   2.94613  3.58571  0.11738  3.49017     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     23   2.94613  3.58571  0.11738  3.49017     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     24   3.43079  0.13048  3.48035  2.82731     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     25   0.14216  3.37825  2.80062  3.27973     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     26   3.08658  2.59385  3.13481  0.17900     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     27   2.94613  3.58571  0.11738  3.49017     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     28   3.43079  0.13048  3.48035  2.82731     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     29   3.43079  0.13048  3.48035  2.82731     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     30   3.08658  2.59385  3.13481  0.17900     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     31   2.94613  3.58571  0.11738  3.49017     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     32   3.08658  2.59385  3.13481  0.17900     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     33   3.43079  0.13048  3.48035  2.82731     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     34   3.08658  2.59385  3.13481  0.17900     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     35   2.94613  3.58571  0.11738  3.49017     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     36   0.14216  3.37825  2.80062  3.27973     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     37   2.94613  3.58571  0.11738  3.49017     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     38   3.43079  0.13048  3.48035  2.82731     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     39   2.94613  3.58571  0.11738  3.49017     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     40   3.08658  2.59385  3.13481  0.17900     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     41   3.43079  0.13048  3.48035  2.82731     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     42   0.14216  3.37825  2.80062  3.27973     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     43   3.08658  2.59385  3.13481  0.17900     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     44   3.08658  2.59385  3.13481  0.17900     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01031  4.01031  1.46634  0.26236  1.09861  0.40547
+     45   1.52558  2.20399  2.32694  0.55417     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01863  3.99202        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_onea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:43:52 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4063162399
+STATS LOCAL MSV       -7.4155  0.72875
+STATS LOCAL VITERBI   -8.2840  0.72875
+STATS LOCAL FORWARD   -3.5006  0.72875
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.70272  1.26741  1.19420  1.45540
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.92825  2.28391  0.95698  2.13014      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.15554  1.00938  2.23102  0.88601     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_oneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:44:00 2012
+NSEQ  4
+EFFN  3.167969
+CKSUM 3370876521
+STATS LOCAL MSV       -8.1196  0.71932
+STATS LOCAL VITERBI   -7.8523  0.71932
+STATS LOCAL FORWARD   -3.8556  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93279  1.20454  1.14657  1.43674
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  0.00000        *
+      1   2.91173  3.53592  0.12299  3.43528      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      2   3.37444  0.13743  3.42635  2.78609      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      3   2.91173  3.53592  0.12299  3.43528      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      4   3.37444  0.13743  3.42635  2.78609      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      5   3.37444  0.13743  3.42635  2.78609      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      6   3.37444  0.13743  3.42635  2.78609      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      7   3.37444  0.13743  3.42635  2.78609      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      8   3.03758  2.56263  3.08768  0.18713      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      9   3.03758  2.56263  3.08768  0.18713      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     10   2.91173  3.53592  0.12299  3.43528     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     11   2.91173  3.53592  0.12299  3.43528     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     12   3.03758  2.56263  3.08768  0.18713     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     13   0.14880  3.32943  2.76878  3.22633     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     14   3.03758  2.56263  3.08768  0.18713     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     15   3.03758  2.56263  3.08768  0.18713     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     16   3.37444  0.13743  3.42635  2.78609     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     17   3.37444  0.13743  3.42635  2.78609     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     18   2.91173  3.53592  0.12299  3.43528     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     19   0.14880  3.32943  2.76878  3.22633     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     20   2.91173  3.53592  0.12299  3.43528     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     21   2.91173  3.53592  0.12299  3.43528     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     22   2.91173  3.53592  0.12299  3.43528     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     23   2.91173  3.53592  0.12299  3.43528     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     24   3.37444  0.13743  3.42635  2.78609     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     25   0.14880  3.32943  2.76878  3.22633     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     26   3.03758  2.56263  3.08768  0.18713     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     27   2.91173  3.53592  0.12299  3.43528     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     28   3.37444  0.13743  3.42635  2.78609     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     29   3.37444  0.13743  3.42635  2.78609     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     30   3.03758  2.56263  3.08768  0.18713     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     31   2.91173  3.53592  0.12299  3.43528     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     32   3.03758  2.56263  3.08768  0.18713     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     33   3.03758  2.56263  3.08768  0.18713     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     34   3.37444  0.13743  3.42635  2.78609     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     35   2.91173  3.53592  0.12299  3.43528     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     36   0.14880  3.32943  2.76878  3.22633     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     37   2.91173  3.53592  0.12299  3.43528     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     38   3.37444  0.13743  3.42635  2.78609     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     39   2.91173  3.53592  0.12299  3.43528     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     40   3.03758  2.56263  3.08768  0.18713     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     41   3.37444  0.13743  3.42635  2.78609     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     42   2.91173  3.53592  0.12299  3.43528     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     43   3.03758  2.56263  3.08768  0.18713     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     44   3.37444  0.13743  3.42635  2.78609     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     45   0.14880  3.32943  2.76878  3.22633     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01917  3.96423        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_onec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:44:06 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3677974914
+STATS LOCAL MSV       -7.5987  0.72786
+STATS LOCAL VITERBI   -8.3454  0.72786
+STATS LOCAL FORWARD   -3.2444  0.72786
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82499  1.22407  1.12070  1.52006
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.15554  1.00938  2.23102  0.88601      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_oned_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:44:13 2012
+NSEQ  7
+EFFN  3.284668
+CKSUM 4274358060
+STATS LOCAL MSV       -8.0943  0.71931
+STATS LOCAL VITERBI   -7.9636  0.71931
+STATS LOCAL FORWARD   -3.6962  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.18504  1.06747  1.09179  1.57006
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  0.00000        *
+      1   2.93897  3.57531  0.11853  3.47870      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+      2   3.41899  0.13190  3.46904  2.81871      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+      3   2.93897  3.57531  0.11853  3.47870      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+      4   3.41899  0.13190  3.46904  2.81871      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+      5   3.41899  0.13190  3.46904  2.81871      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+      6   3.41899  0.13190  3.46904  2.81871      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+      7   3.41899  0.13190  3.46904  2.81871      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+      8   3.41899  0.13190  3.46904  2.81871      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+      9   3.07626  2.58729  3.12489  0.18068      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     10   2.93897  3.57531  0.11853  3.47870     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     11   2.93897  3.57531  0.11853  3.47870     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     12   3.41899  0.13190  3.46904  2.81871     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     13   0.14352  3.36802  2.79396  3.26852     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     14   3.07626  2.58729  3.12489  0.18068     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     15   3.07626  2.58729  3.12489  0.18068     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     16   3.41899  0.13190  3.46904  2.81871     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     17   3.41899  0.13190  3.46904  2.81871     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     18   2.08216  3.08691  0.25099  2.96289     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     19   2.93897  3.57531  0.11853  3.47870     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     20   2.93897  3.57531  0.11853  3.47870     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     21   2.93897  3.57531  0.11853  3.47870     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     22   2.93897  3.57531  0.11853  3.47870     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     23   2.93897  3.57531  0.11853  3.47870     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     24   3.41899  0.13190  3.46904  2.81871     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     25   0.14352  3.36802  2.79396  3.26852     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     26   3.07626  2.58729  3.12489  0.18068     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     27   2.93897  3.57531  0.11853  3.47870     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     28   3.41899  0.13190  3.46904  2.81871     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     29   3.41899  0.13190  3.46904  2.81871     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     30   3.07626  2.58729  3.12489  0.18068     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     31   2.93897  3.57531  0.11853  3.47870     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     32   3.07626  2.58729  3.12489  0.18068     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     33   3.07626  2.58729  3.12489  0.18068     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     34   3.41899  0.13190  3.46904  2.81871     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     35   2.93897  3.57531  0.11853  3.47870     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     36   0.14352  3.36802  2.79396  3.26852     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     37   2.93897  3.57531  0.11853  3.47870     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     38   3.41899  0.13190  3.46904  2.81871     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     39   2.93897  3.57531  0.11853  3.47870     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     40   3.07626  2.58729  3.12489  0.18068     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     41   2.20805  0.61730  1.50175  2.05614     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     42   3.07626  2.58729  3.12489  0.18068     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     43   3.41899  0.13190  3.46904  2.81871     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     44   3.41899  0.13190  3.46904  2.81871     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
+     45   2.93897  3.57531  0.11853  3.47870     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01875  3.98614        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_onee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:44:23 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1794853889
+STATS LOCAL MSV       -7.6406  0.72821
+STATS LOCAL VITERBI   -8.3627  0.72821
+STATS LOCAL FORWARD   -3.2752  0.72821
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.78798  1.17856  1.10257  1.64524
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.15554  1.00938  2.23102  0.88601      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.92825  2.28391  0.95698  2.13014     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_onef_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:44:30 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 871522140
+STATS LOCAL MSV       -7.9021  0.72092
+STATS LOCAL VITERBI   -7.9162  0.72092
+STATS LOCAL FORWARD   -3.9268  0.72092
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.69363  1.37423  1.34081  1.19905
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   1.34853  2.58976  0.54705  2.44542     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   3.30705  0.14631  3.36166  2.73626     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_oneg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:44:36 2012
+NSEQ  1561
+EFFN  6.684198
+CKSUM 3418821788
+STATS LOCAL MSV       -6.8053  0.71932
+STATS LOCAL VITERBI   -7.7544  0.71932
+STATS LOCAL FORWARD   -4.0381  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.97205  1.21424  1.17150  1.37045
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  0.00000        *
+      1   3.38872  4.22464  0.06553  4.19668      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+      2   4.17295  0.06764  4.18865  3.35719      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+      3   2.89526  3.68676  0.10461  3.96380      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+      4   4.17295  0.06764  4.18865  3.35719      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+      5   3.85825  0.08969  4.06504  3.04656      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+      6   3.36357  0.20071  3.57790  2.12607      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+      7   2.66581  0.74063  2.69178  0.95222      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02306  4.48686  4.46190  1.46634  0.26236  1.09861  0.40547
+      8   2.28437  1.01909  2.24032  0.84208      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02302  4.48658  4.46598  1.46634  0.26236  1.08204  0.41386
+      9   2.97925  1.83733  2.84485  0.31227      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48663  4.48663  1.46634  0.26236  1.08493  0.41238
+     10   3.03887  3.92884  0.08838  4.07273     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     11   3.38872  4.22464  0.06553  4.19668     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     12   2.98855  1.89219  3.15990  0.27909     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     13   0.09188  4.00662  2.98284  3.96657     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     14   3.49000  2.67023  3.53001  0.13816     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     15   3.50719  2.75819  3.71821  0.12518     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     16   4.10315  0.07635  3.85632  3.32876     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     17   4.05120  0.09430  4.07494  2.88963     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     18   2.18701  2.95611  0.29521  2.39306     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     19   1.42864  2.08368  0.85039  1.56711     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     20   1.57113  2.81477  0.41755  2.60891     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     21   2.33950  3.91375  0.14818  3.84520     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     22   3.07612  3.94759  0.08936  3.90985     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     23   3.24064  4.20152  0.07209  4.17061     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     24   3.91745  0.11158  3.71715  2.79057     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     25   0.08944  3.98919  3.12678  3.76436     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     26   3.67416  2.45932  3.70423  0.14558     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02320  4.48686  4.45044  1.46634  0.26236  1.09861  0.40547
+     27   2.74732  4.08357  0.10382  4.03621     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02278  4.48644  4.48644  1.46634  0.26236  1.07448  0.41775
+     28   4.03214  0.09171  3.87842  3.01168     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     29   4.13245  0.07658  4.15085  3.17186     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     30   3.70007  2.76771  3.55871  0.12330     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     31   3.20711  4.15474  0.07885  3.92905     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     32   3.76183  2.77666  3.78620  0.11448     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     33   3.45457  1.89935  3.49725  0.23768     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     34   4.03057  0.09881  4.05562  2.83032     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     35   3.21941  4.19413  0.07359  4.14267     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     36   0.07697  4.05426  3.24956  4.02037     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     37   3.23927  4.20128  0.07216  4.17034     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     38   3.54766  0.09882  3.98351  3.06432     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     39   3.25398  3.76065  0.08620  3.87757     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     40   3.51808  2.77215  3.72403  0.12366     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     41   4.12740  0.07768  4.14614  3.15136     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     42   0.12508  3.63349  2.86702  3.37326     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     43   2.85545  2.30195  2.67557  0.25678     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     44   2.26787  2.17381  2.46789  0.35959     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02277  4.48686  4.48686  1.46634  0.26236  1.09861  0.40547
+     45   0.95398  2.27139  1.55190  1.20470     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01145  4.47554        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:46:16 2012
+NSEQ  246
+EFFN  3.629791
+CKSUM 3456989883
+STATS LOCAL MSV       -7.3471  0.71931
+STATS LOCAL VITERBI   -7.8229  0.71931
+STATS LOCAL FORWARD   -4.0682  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.94630  1.16064  1.18801  1.43093
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  0.00000        *
+      1   3.01166  3.68172  0.10738  3.59634      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+      2   3.54046  0.11810  3.58524  2.90651      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+      3   3.01166  3.68172  0.10738  3.59634      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+      4   3.54046  0.11810  3.58524  2.90651      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+      5   3.54046  0.11810  3.58524  2.90651      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+      6   3.54046  0.11810  3.58524  2.90651      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+      7   3.01166  3.68172  0.10738  3.59634      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+      8   3.45729  0.13499  3.50490  2.73790      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+      9   3.17518  0.20565  3.23237  2.25734      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     10   0.17094  3.32124  2.51132  3.22234     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     11   3.01166  3.68172  0.10738  3.59634     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     12   2.53869  1.28344  2.60705  0.56178     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     13   0.14070  3.43181  2.75675  3.34041     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     14   2.67631  1.58398  2.74020  0.41329     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     15   3.12781  2.51145  3.17441  0.18246     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     16   3.54046  0.11810  3.58524  2.90651     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     17   3.04838  2.32596  3.09826  0.21103     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     18   3.01166  3.68172  0.10738  3.59634     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     19   3.01166  3.68172  0.10738  3.59634     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     20   3.54046  0.11810  3.58524  2.90651     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     21   3.01166  3.68172  0.10738  3.59634     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     22   3.01166  3.68172  0.10738  3.59634     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     23   3.01166  3.68172  0.10738  3.59634     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     24   3.48300  0.12963  3.52971  2.78795     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     25   0.13015  3.47373  2.86232  3.38439     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     26   3.18398  2.65567  3.22844  0.16404     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     27   3.01166  3.68172  0.10738  3.59634     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     28   3.54046  0.11810  3.58524  2.90651     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     29   3.54046  0.11810  3.58524  2.90651     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     30   3.18398  2.65567  3.22844  0.16404     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     31   3.01166  3.68172  0.10738  3.59634     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     32   3.11701  2.48512  3.16405  0.18616     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     33   2.52911  1.25786  2.59778  0.57702     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     34   3.42784  0.14130  3.47650  2.68241     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     35   3.01166  3.68172  0.10738  3.59634     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     36   0.13015  3.47373  2.86232  3.38439     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     37   3.01166  3.68172  0.10738  3.59634     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     38   3.54046  0.11810  3.58524  2.90651     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     39   3.01166  3.68172  0.10738  3.59634     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     40   3.18398  2.65567  3.22844  0.16404     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     41   3.54046  0.11810  3.58524  2.90651     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     42   0.14087  3.43115  2.75517  3.33971     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     43   3.18398  2.65567  3.22844  0.16404     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     44   3.12582  2.50656  3.17250  0.18314     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06557  4.06557  1.46634  0.26236  1.09861  0.40547
+     45   3.14435  2.55255  3.19029  0.17690     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01761  4.04826        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_seventeen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:49:00 2012
+NSEQ  5
+EFFN  3.354492
+CKSUM 4109630378
+STATS LOCAL MSV       -8.1285  0.71931
+STATS LOCAL VITERBI   -7.7585  0.71931
+STATS LOCAL FORWARD   -4.1769  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63493  1.51780  1.38270  1.09380
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  0.00000        *
+      1   2.95458  3.59803  0.11604  3.50376      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+      2   3.44478  0.12882  3.49374  2.83749      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+      3   0.14056  3.39039  2.80850  3.29302      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+      4   3.44478  0.12882  3.49374  2.83749      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+      5   3.09885  2.60165  3.14661  0.17704      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+      6   3.09885  2.60165  3.14661  0.17704      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+      7   3.09885  2.60165  3.14661  0.17704      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+      8   2.95458  3.59803  0.11604  3.50376      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+      9   2.95458  3.59803  0.11604  3.50376      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     10   2.95458  3.59803  0.11604  3.50376     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     11   2.95458  3.59803  0.11604  3.50376     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     12   3.09885  2.60165  3.14661  0.17704     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     13   0.14056  3.39039  2.80850  3.29302     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     14   3.09885  2.60165  3.14661  0.17704     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     15   3.44478  0.12882  3.49374  2.83749     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     16   3.44478  0.12882  3.49374  2.83749     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     17   3.44478  0.12882  3.49374  2.83749     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     18   3.44478  0.12882  3.49374  2.83749     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     19   3.44478  0.12882  3.49374  2.83749     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     20   0.14056  3.39039  2.80850  3.29302     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     21   0.14056  3.39039  2.80850  3.29302     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     22   0.14056  3.39039  2.80850  3.29302     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     23   2.95458  3.59803  0.11604  3.50376     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     24   3.09885  2.60165  3.14661  0.17704     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     25   0.14056  3.39039  2.80850  3.29302     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     26   3.09885  2.60165  3.14661  0.17704     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     27   0.14056  3.39039  2.80850  3.29302     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     28   3.44478  0.12882  3.49374  2.83749     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     29   3.09885  2.60165  3.14661  0.17704     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     30   3.09885  2.60165  3.14661  0.17704     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     31   2.95458  3.59803  0.11604  3.50376     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     32   3.09885  2.60165  3.14661  0.17704     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     33   3.09885  2.60165  3.14661  0.17704     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     34   3.09885  2.60165  3.14661  0.17704     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     35   2.95458  3.59803  0.11604  3.50376     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     36   0.14056  3.39039  2.80850  3.29302     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     37   2.95458  3.59803  0.11604  3.50376     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     38   3.44478  0.12882  3.49374  2.83749     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     39   2.95458  3.59803  0.11604  3.50376     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     40   3.09885  2.60165  3.14661  0.17704     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     41   3.09885  2.60165  3.14661  0.17704     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     42   2.95458  3.59803  0.11604  3.50376     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     43   3.09885  2.60165  3.14661  0.17704     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     44   3.09885  2.60165  3.14661  0.17704     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03667  4.01719  4.01719  1.46634  0.26236  1.09861  0.40547
+     45   3.09885  2.60165  3.14661  0.17704     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01850  3.99902        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_seventyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:08:27 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3825338534
+STATS LOCAL MSV       -7.6685  0.72872
+STATS LOCAL VITERBI   -8.3299  0.72872
+STATS LOCAL FORWARD   -3.4225  0.72872
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66125  1.37506  1.44213  1.13678
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_seventyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:07:44 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2006638932
+STATS LOCAL MSV       -7.3995  0.72872
+STATS LOCAL VITERBI   -8.2859  0.72872
+STATS LOCAL FORWARD   -3.5964  0.72872
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66127  1.37480  1.44227  1.13688
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.81865  0.23582  2.88868  2.35662     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_seventyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:07:34 2012
+NSEQ  5
+EFFN  3.383789
+CKSUM 3789775781
+STATS LOCAL MSV       -7.5808  0.71931
+STATS LOCAL VITERBI   -7.7977  0.71931
+STATS LOCAL FORWARD   -3.6708  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.42062  1.37585  1.52146  1.24681
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  0.00000        *
+      1   3.45541  0.12758  3.50392  2.84521      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      2   2.96099  3.60737  0.11504  3.51408      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      3   3.45541  0.12758  3.50392  2.84521      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      4   3.45541  0.12758  3.50392  2.84521      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      5   3.10820  2.60760  3.15560  0.17555      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      6   0.13936  3.39963  2.81449  3.30313      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      7   2.96099  3.60737  0.11504  3.51408      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      8   3.10820  2.60760  3.15560  0.17555      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      9   0.13936  3.39963  2.81449  3.30313      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     10   2.96099  3.60737  0.11504  3.51408     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     11   3.10820  2.60760  3.15560  0.17555     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     12   3.45541  0.12758  3.50392  2.84521     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     13   0.13936  3.39963  2.81449  3.30313     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     14   0.13936  3.39963  2.81449  3.30313     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     15   3.10820  2.60760  3.15560  0.17555     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     16   3.45541  0.12758  3.50392  2.84521     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     17   3.10820  2.60760  3.15560  0.17555     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     18   0.33147  2.87530  1.82228  2.74770     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     19   3.45541  0.12758  3.50392  2.84521     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     20   3.10820  2.60760  3.15560  0.17555     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     21   0.13936  3.39963  2.81449  3.30313     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     22   2.96099  3.60737  0.11504  3.51408     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     23   2.96099  3.60737  0.11504  3.51408     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     24   3.45541  0.12758  3.50392  2.84521     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     25   0.13936  3.39963  2.81449  3.30313     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     26   3.45541  0.12758  3.50392  2.84521     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     27   0.13936  3.39963  2.81449  3.30313     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     28   2.96099  3.60737  0.11504  3.51408     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     29   3.10820  2.60760  3.15560  0.17555     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     30   3.10820  2.60760  3.15560  0.17555     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     31   2.96099  3.60737  0.11504  3.51408     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     32   3.10820  2.60760  3.15560  0.17555     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     33   3.10820  2.60760  3.15560  0.17555     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     34   3.10820  2.60760  3.15560  0.17555     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     35   3.45541  0.12758  3.50392  2.84521     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     36   0.13936  3.39963  2.81449  3.30313     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     37   2.96099  3.60737  0.11504  3.51408     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     38   3.10820  2.60760  3.15560  0.17555     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     39   0.13936  3.39963  2.81449  3.30313     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     40   3.10820  2.60760  3.15560  0.17555     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     41   3.45541  0.12758  3.50392  2.84521     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     42   3.10820  2.60760  3.15560  0.17555     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     43   2.96099  3.60737  0.11504  3.51408     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     44   3.45541  0.12758  3.50392  2.84521     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     45   0.13936  3.39963  2.81449  3.30313     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01840  4.00438        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_seventynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:08:38 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3300810471
+STATS LOCAL MSV       -8.0023  0.72044
+STATS LOCAL VITERBI   -7.7611  0.72044
+STATS LOCAL FORWARD   -4.2969  0.72044
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.80885  1.37759  1.26060  1.20234
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   0.15719  3.27118  2.73043  3.16274      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.86982  3.47591  0.13017  3.36931     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.97980  2.52563  3.03204  0.19727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_seventyonea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:06:29 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1074163483
+STATS LOCAL MSV       -7.9489  0.72046
+STATS LOCAL VITERBI   -7.8068  0.72046
+STATS LOCAL FORWARD   -4.0882  0.72046
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40598  1.38391  1.44710  1.31295
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_seventyoneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:06:37 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2036981238
+STATS LOCAL MSV       -7.6653  0.72065
+STATS LOCAL VITERBI   -7.8035  0.72065
+STATS LOCAL FORWARD   -3.9699  0.72065
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27918  1.44870  1.59917  1.25598
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_seventyonec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:06:45 2012
+NSEQ  4
+EFFN  3.558594
+CKSUM 2902108556
+STATS LOCAL MSV       -7.5600  0.71932
+STATS LOCAL VITERBI   -7.8244  0.71932
+STATS LOCAL FORWARD   -4.2647  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33114  1.39430  1.54074  1.29611
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  0.00000        *
+      1   2.99754  3.66093  0.10946  3.57332      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+      2   3.51660  0.12068  3.56245  2.88939      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+      3   2.99754  3.66093  0.10946  3.57332      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+      4   2.32216  0.52913  1.62865  2.14876      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+      5   3.16254  2.64208  3.20785  0.16721      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+      6   3.51660  0.12068  3.56245  2.88939      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+      7   0.13267  3.45290  2.84891  3.36153      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+      8   0.13267  3.45290  2.84891  3.36153      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+      9   3.16254  2.64208  3.20785  0.16721      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     10   2.99754  3.66093  0.10946  3.57332     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     11   2.99754  3.66093  0.10946  3.57332     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     12   3.16254  2.64208  3.20785  0.16721     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     13   0.13267  3.45290  2.84891  3.36153     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     14   3.16254  2.64208  3.20785  0.16721     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     15   3.16254  2.64208  3.20785  0.16721     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     16   3.51660  0.12068  3.56245  2.88939     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     17   3.51660  0.12068  3.56245  2.88939     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     18   0.13267  3.45290  2.84891  3.36153     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     19   3.16254  2.64208  3.20785  0.16721     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     20   3.16254  2.64208  3.20785  0.16721     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     21   2.99754  3.66093  0.10946  3.57332     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     22   0.13267  3.45290  2.84891  3.36153     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     23   2.29468  1.69642  0.48124  2.32432     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     24   3.51660  0.12068  3.56245  2.88939     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     25   0.13267  3.45290  2.84891  3.36153     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     26   3.51660  0.12068  3.56245  2.88939     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     27   2.99754  3.66093  0.10946  3.57332     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     28   3.51660  0.12068  3.56245  2.88939     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     29   3.51660  0.12068  3.56245  2.88939     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     30   3.16254  2.64208  3.20785  0.16721     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     31   2.99754  3.66093  0.10946  3.57332     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     32   3.16254  2.64208  3.20785  0.16721     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     33   3.16254  2.64208  3.20785  0.16721     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     34   3.16254  2.64208  3.20785  0.16721     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     35   3.51660  0.12068  3.56245  2.88939     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     36   0.13267  3.45290  2.84891  3.36153     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     37   2.99754  3.66093  0.10946  3.57332     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     38   3.16254  2.64208  3.20785  0.16721     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     39   0.13267  3.45290  2.84891  3.36153     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     40   3.16254  2.64208  3.20785  0.16721     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     41   3.51660  0.12068  3.56245  2.88939     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     42   0.13267  3.45290  2.84891  3.36153     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     43   0.13267  3.45290  2.84891  3.36153     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     44   0.13267  3.45290  2.84891  3.36153     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05328  4.05328  1.46634  0.26236  1.09861  0.40547
+     45   0.13267  3.45290  2.84891  3.36153     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01783  4.03576        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_seventyoned_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:06:51 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4171626406
+STATS LOCAL MSV       -7.3070  0.72827
+STATS LOCAL VITERBI   -8.3870  0.72827
+STATS LOCAL FORWARD   -3.5109  0.72827
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39995  1.39200  1.43261  1.32379
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_seventyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:08:16 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 650888368
+STATS LOCAL MSV       -7.3946  0.72790
+STATS LOCAL VITERBI   -8.2462  0.72790
+STATS LOCAL FORWARD   -3.2358  0.72790
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.51987  1.39755  1.26525  1.37877
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_seventysixa_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:07:54 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 118054322
+STATS LOCAL MSV       -7.9824  0.72074
+STATS LOCAL VITERBI   -7.7979  0.72074
+STATS LOCAL FORWARD   -3.7823  0.72074
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47365  1.44202  1.52325  1.15055
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_seventysixb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:08:02 2012
+NSEQ  4
+EFFN  3.402344
+CKSUM 1924703099
+STATS LOCAL MSV       -7.5718  0.71933
+STATS LOCAL VITERBI   -7.7518  0.71933
+STATS LOCAL FORWARD   -3.9502  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33919  1.51570  1.70167  1.09091
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  0.00000        *
+      1   2.96500  3.61323  0.11441  3.52056      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      2   3.46209  0.12680  3.51031  2.85005      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      3   0.13862  3.40543  2.81825  3.30949      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      4   3.46209  0.12680  3.51031  2.85005      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      5   3.11409  2.61134  3.16126  0.17462      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      6   3.46209  0.12680  3.51031  2.85005      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      7   3.11409  2.61134  3.16126  0.17462      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      8   3.11409  2.61134  3.16126  0.17462      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      9   3.11409  2.61134  3.16126  0.17462      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     10   2.96500  3.61323  0.11441  3.52056     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     11   2.96500  3.61323  0.11441  3.52056     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     12   3.11409  2.61134  3.16126  0.17462     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     13   0.13862  3.40543  2.81825  3.30949     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     14   3.11409  2.61134  3.16126  0.17462     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     15   3.11409  2.61134  3.16126  0.17462     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     16   3.46209  0.12680  3.51031  2.85005     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     17   3.46209  0.12680  3.51031  2.85005     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     18   0.13862  3.40543  2.81825  3.30949     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     19   0.13862  3.40543  2.81825  3.30949     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     20   0.13862  3.40543  2.81825  3.30949     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     21   2.96500  3.61323  0.11441  3.52056     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     22   0.13862  3.40543  2.81825  3.30949     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     23   2.96500  3.61323  0.11441  3.52056     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     24   3.11409  2.61134  3.16126  0.17462     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     25   0.13862  3.40543  2.81825  3.30949     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     26   3.46209  0.12680  3.51031  2.85005     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     27   0.13862  3.40543  2.81825  3.30949     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     28   3.46209  0.12680  3.51031  2.85005     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     29   3.11409  2.61134  3.16126  0.17462     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     30   3.11409  2.61134  3.16126  0.17462     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     31   2.96500  3.61323  0.11441  3.52056     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     32   3.11409  2.61134  3.16126  0.17462     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     33   3.11409  2.61134  3.16126  0.17462     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     34   3.11409  2.61134  3.16126  0.17462     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     35   3.46209  0.12680  3.51031  2.85005     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     36   0.13862  3.40543  2.81825  3.30949     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     37   2.96500  3.61323  0.11441  3.52056     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     38   3.11409  2.61134  3.16126  0.17462     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     39   0.13862  3.40543  2.81825  3.30949     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     40   3.11409  2.61134  3.16126  0.17462     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     41   3.46209  0.12680  3.51031  2.85005     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     42   0.13862  3.40543  2.81825  3.30949     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     43   3.11409  2.61134  3.16126  0.17462     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     44   0.13862  3.40543  2.81825  3.30949     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     45   3.11409  2.61134  3.16126  0.17462     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01834  4.00776        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_seventythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:07:24 2012
+NSEQ  9
+EFFN  3.414551
+CKSUM 983694200
+STATS LOCAL MSV       -7.3651  0.71931
+STATS LOCAL VITERBI   -7.7205  0.71931
+STATS LOCAL FORWARD   -4.0936  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.64507  1.37067  1.39072  1.19017
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  0.00000        *
+      1   2.96763  3.61706  0.11400  3.52480      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+      2   3.46646  0.12630  3.51449  2.85321      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+      3   0.13813  3.40923  2.82071  3.31365      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+      4   3.46646  0.12630  3.51449  2.85321      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+      5   3.11794  2.61378  3.16497  0.17402      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+      6   3.46646  0.12630  3.51449  2.85321      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+      7   0.13813  3.40923  2.82071  3.31365      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+      8   3.46646  0.12630  3.51449  2.85321      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+      9   3.11794  2.61378  3.16497  0.17402      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     10   2.96763  3.61706  0.11400  3.52480     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     11   2.96763  3.61706  0.11400  3.52480     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     12   3.11794  2.61378  3.16497  0.17402     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     13   0.13813  3.40923  2.82071  3.31365     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     14   3.11794  2.61378  3.16497  0.17402     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     15   3.11794  2.61378  3.16497  0.17402     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     16   3.46646  0.12630  3.51449  2.85321     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     17   3.46646  0.12630  3.51449  2.85321     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     18   2.96763  3.61706  0.11400  3.52480     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     19   2.96763  3.61706  0.11400  3.52480     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     20   3.11794  2.61378  3.16497  0.17402     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     21   2.96763  3.61706  0.11400  3.52480     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     22   0.13813  3.40923  2.82071  3.31365     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     23   2.96763  3.61706  0.11400  3.52480     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     24   3.11794  2.61378  3.16497  0.17402     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     25   0.13813  3.40923  2.82071  3.31365     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     26   3.46646  0.12630  3.51449  2.85321     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     27   2.59250  2.39120  0.25845  2.79036     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     28   3.46646  0.12630  3.51449  2.85321     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     29   3.46646  0.12630  3.51449  2.85321     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     30   3.11794  2.61378  3.16497  0.17402     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     31   2.96763  3.61706  0.11400  3.52480     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     32   3.11794  2.61378  3.16497  0.17402     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     33   3.11794  2.61378  3.16497  0.17402     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     34   3.11794  2.61378  3.16497  0.17402     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     35   3.46646  0.12630  3.51449  2.85321     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     36   0.13813  3.40923  2.82071  3.31365     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     37   2.96763  3.61706  0.11400  3.52480     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     38   3.11794  2.61378  3.16497  0.17402     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     39   0.13813  3.40923  2.82071  3.31365     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     40   3.11794  2.61378  3.16497  0.17402     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     41   3.46646  0.12630  3.51449  2.85321     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     42   0.23681  3.08800  2.17059  2.97293     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     43   3.11794  2.61378  3.16497  0.17402     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     44   3.11794  2.61378  3.16497  0.17402     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02795  4.02795  1.46634  0.26236  1.09861  0.40547
+     45   2.96763  3.61706  0.11400  3.52480     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01830  4.00998        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_seventytwoa_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:07:05 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2846805506
+STATS LOCAL MSV       -7.2822  0.72899
+STATS LOCAL VITERBI   -8.3416  0.72899
+STATS LOCAL FORWARD   -3.6624  0.72899
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45871  1.37330  1.64708  1.13450
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_seventytwob_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:07:12 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2867399312
+STATS LOCAL MSV       -7.3807  0.72839
+STATS LOCAL VITERBI   -8.4535  0.72839
+STATS LOCAL FORWARD   -3.5163  0.72839
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39695  1.44760  1.43519  1.27495
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:46:07 2012
+NSEQ  8
+EFFN  3.238281
+CKSUM 2893228350
+STATS LOCAL MSV       -8.0085  0.71933
+STATS LOCAL VITERBI   -7.8922  0.71933
+STATS LOCAL FORWARD   -3.9366  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.95135  1.19921  1.19729  1.36856
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  0.00000        *
+      1   2.92831  3.55987  0.12026  3.46167      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      2   3.40150  0.13404  3.45229  2.80593      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      3   2.92831  3.55987  0.12026  3.46167      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      4   3.40150  0.13404  3.45229  2.80593      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      5   3.40150  0.13404  3.45229  2.80593      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      6   3.40150  0.13404  3.45229  2.80593      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      7   2.92831  3.55987  0.12026  3.46167      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      8   3.40150  0.13404  3.45229  2.80593      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      9   3.06103  2.57758  3.11024  0.18319      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     10   2.92831  3.55987  0.12026  3.46167     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     11   2.92831  3.55987  0.12026  3.46167     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     12   3.06103  2.57758  3.11024  0.18319     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     13   0.14557  3.35286  2.78409  3.25194     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     14   3.06103  2.57758  3.11024  0.18319     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     15   3.06103  2.57758  3.11024  0.18319     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     16   3.40150  0.13404  3.45229  2.80593     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     17   3.40150  0.13404  3.45229  2.80593     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     18   0.26026  3.00055  2.09347  2.88010     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     19   2.92831  3.55987  0.12026  3.46167     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     20   3.40150  0.13404  3.45229  2.80593     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     21   2.92831  3.55987  0.12026  3.46167     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     22   2.92831  3.55987  0.12026  3.46167     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     23   2.92831  3.55987  0.12026  3.46167     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     24   3.40150  0.13404  3.45229  2.80593     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     25   0.14557  3.35286  2.78409  3.25194     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     26   3.06103  2.57758  3.11024  0.18319     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     27   2.92831  3.55987  0.12026  3.46167     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     28   3.40150  0.13404  3.45229  2.80593     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     29   3.40150  0.13404  3.45229  2.80593     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     30   3.06103  2.57758  3.11024  0.18319     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     31   2.92831  3.55987  0.12026  3.46167     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     32   3.06103  2.57758  3.11024  0.18319     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     33   3.06103  2.57758  3.11024  0.18319     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     34   3.40150  0.13404  3.45229  2.80593     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     35   2.92831  3.55987  0.12026  3.46167     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     36   0.14557  3.35286  2.78409  3.25194     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     37   2.92831  3.55987  0.12026  3.46167     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     38   3.40150  0.13404  3.45229  2.80593     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     39   2.92831  3.55987  0.12026  3.46167     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     40   3.06103  2.57758  3.11024  0.18319     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     41   3.40150  0.13404  3.45229  2.80593     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     42   0.14557  3.35286  2.78409  3.25194     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     43   3.06103  2.57758  3.11024  0.18319     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     44   3.06103  2.57758  3.11024  0.18319     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     45   3.06103  2.57758  3.11024  0.18319     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01891  3.97749        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:48:43 2012
+NSEQ  6
+EFFN  3.383789
+CKSUM 1847283196
+STATS LOCAL MSV       -7.4356  0.71933
+STATS LOCAL VITERBI   -7.5824  0.71933
+STATS LOCAL FORWARD   -4.2129  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72596  1.34056  1.31756  1.22925
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  0.00000        *
+      1   3.10820  2.60760  3.15560  0.17555      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      2   3.10820  2.60760  3.15560  0.17555      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      3   2.96099  3.60737  0.11504  3.51408      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      4   3.45541  0.12758  3.50392  2.84521      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      5   2.96099  3.60737  0.11504  3.51408      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      6   3.45541  0.12758  3.50392  2.84521      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      7   3.45541  0.12758  3.50392  2.84521      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      8   3.10820  2.60760  3.15560  0.17555      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      9   3.45541  0.12758  3.50392  2.84521      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     10   2.50867  0.59747  2.58044  1.22867     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     11   0.13936  3.39963  2.81449  3.30313     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     12   2.96099  3.60737  0.11504  3.51408     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     13   3.10820  2.60760  3.15560  0.17555     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     14   0.13936  3.39963  2.81449  3.30313     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     15   0.13936  3.39963  2.81449  3.30313     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     16   3.45541  0.12758  3.50392  2.84521     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     17   3.10820  2.60760  3.15560  0.17555     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     18   3.10820  2.60760  3.15560  0.17555     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     19   2.96099  3.60737  0.11504  3.51408     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     20   2.96099  3.60737  0.11504  3.51408     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     21   0.13936  3.39963  2.81449  3.30313     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     22   2.96099  3.60737  0.11504  3.51408     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     23   2.96099  3.60737  0.11504  3.51408     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     24   3.45541  0.12758  3.50392  2.84521     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     25   0.13936  3.39963  2.81449  3.30313     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     26   3.10820  2.60760  3.15560  0.17555     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     27   2.96099  3.60737  0.11504  3.51408     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     28   3.45541  0.12758  3.50392  2.84521     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     29   3.45541  0.12758  3.50392  2.84521     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     30   3.10820  2.60760  3.15560  0.17555     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     31   2.96099  3.60737  0.11504  3.51408     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     32   3.10820  2.60760  3.15560  0.17555     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     33   3.45541  0.12758  3.50392  2.84521     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     34   3.10820  2.60760  3.15560  0.17555     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     35   2.96099  3.60737  0.11504  3.51408     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     36   0.13936  3.39963  2.81449  3.30313     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     37   2.96099  3.60737  0.11504  3.51408     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     38   3.45541  0.12758  3.50392  2.84521     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     39   2.96099  3.60737  0.11504  3.51408     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     40   3.10820  2.60760  3.15560  0.17555     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     41   3.45541  0.12758  3.50392  2.84521     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     42   0.13936  3.39963  2.81449  3.30313     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     43   3.10820  2.60760  3.15560  0.17555     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     44   3.10820  2.60760  3.15560  0.17555     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     45   3.10820  2.60760  3.15560  0.17555     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01840  4.00438        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixtya_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:03:56 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4213980350
+STATS LOCAL MSV       -7.3882  0.72825
+STATS LOCAL VITERBI   -8.1786  0.72825
+STATS LOCAL FORWARD   -3.4656  0.72825
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.58659  1.50986  1.26375  1.23153
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.57915  2.25909  2.64442  0.28946     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixtyb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:04:06 2012
+NSEQ  5
+EFFN  3.334961
+CKSUM 2251782121
+STATS LOCAL MSV       -8.1797  0.71932
+STATS LOCAL VITERBI   -7.7108  0.71932
+STATS LOCAL FORWARD   -4.2099  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.69817  1.31618  1.22414  1.36722
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  0.00000        *
+      1   3.43763  0.12967  3.48690  2.83229      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      2   2.95026  3.59174  0.11672  3.49682      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      3   3.43763  0.12967  3.48690  2.83229      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      4   3.09257  2.59766  3.14057  0.17804      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      5   3.43763  0.12967  3.48690  2.83229      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      6   3.09257  2.59766  3.14057  0.17804      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      7   3.43763  0.12967  3.48690  2.83229      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      8   2.95026  3.59174  0.11672  3.49682      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      9   2.95026  3.59174  0.11672  3.49682      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     10   2.95026  3.59174  0.11672  3.49682     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     11   0.14138  3.38419  2.80447  3.28622     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     12   3.09257  2.59766  3.14057  0.17804     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     13   0.14138  3.38419  2.80447  3.28622     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     14   2.95026  3.59174  0.11672  3.49682     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     15   2.95026  3.59174  0.11672  3.49682     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     16   3.43763  0.12967  3.48690  2.83229     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     17   3.43763  0.12967  3.48690  2.83229     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     18   3.09257  2.59766  3.14057  0.17804     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     19   2.95026  3.59174  0.11672  3.49682     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     20   1.13995  2.56932  0.66342  2.42486     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     21   2.95026  3.59174  0.11672  3.49682     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     22   0.14138  3.38419  2.80447  3.28622     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     23   2.95026  3.59174  0.11672  3.49682     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     24   3.43763  0.12967  3.48690  2.83229     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     25   0.14138  3.38419  2.80447  3.28622     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     26   3.43763  0.12967  3.48690  2.83229     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     27   2.95026  3.59174  0.11672  3.49682     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     28   3.43763  0.12967  3.48690  2.83229     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     29   3.43763  0.12967  3.48690  2.83229     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     30   3.09257  2.59766  3.14057  0.17804     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     31   3.43763  0.12967  3.48690  2.83229     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     32   3.09257  2.59766  3.14057  0.17804     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     33   3.09257  2.59766  3.14057  0.17804     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     34   3.09257  2.59766  3.14057  0.17804     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     35   2.95026  3.59174  0.11672  3.49682     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     36   0.14138  3.38419  2.80447  3.28622     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     37   2.95026  3.59174  0.11672  3.49682     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     38   3.09257  2.59766  3.14057  0.17804     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     39   0.14138  3.38419  2.80447  3.28622     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     40   3.09257  2.59766  3.14057  0.17804     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     41   3.43763  0.12967  3.48690  2.83229     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     42   2.95026  3.59174  0.11672  3.49682     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     43   0.14138  3.38419  2.80447  3.28622     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     44   3.09257  2.59766  3.14057  0.17804     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     45   3.09257  2.59766  3.14057  0.17804     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01857  3.99544        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixtyc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:04:12 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 106256701
+STATS LOCAL MSV       -8.1740  0.72051
+STATS LOCAL VITERBI   -7.8223  0.72051
+STATS LOCAL FORWARD   -3.8706  0.72051
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62782  1.44610  1.31712  1.20314
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
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+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
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+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
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+     14   2.86982  3.47591  0.13017  3.36931     14 - -
+          1.38629  1.38629  1.38629  1.38629
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+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
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+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
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+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
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+     19   2.86982  3.47591  0.13017  3.36931     19 - -
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+          1.38629  1.38629  1.38629  1.38629
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+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
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+     22   0.15719  3.27118  2.73043  3.16274     22 - -
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+          1.38629  1.38629  1.38629  1.38629
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+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
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+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
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+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
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+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
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+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
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+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
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+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
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+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
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+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixtyd_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:04:18 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3321474794
+STATS LOCAL MSV       -8.1205  0.72037
+STATS LOCAL VITERBI   -7.9782  0.72037
+STATS LOCAL FORWARD   -4.0244  0.72037
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71608  1.38098  1.25796  1.25644
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     15   2.86982  3.47591  0.13017  3.36931     15 - -
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixtye_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:04:24 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4026532220
+STATS LOCAL MSV       -7.5442  0.72823
+STATS LOCAL VITERBI   -8.2751  0.72823
+STATS LOCAL FORWARD   -3.5228  0.72823
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74044  1.38541  1.26840  1.22739
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.81865  0.23582  2.88868  2.35662     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixtyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:06:04 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2512108983
+STATS LOCAL MSV       -7.2279  0.72955
+STATS LOCAL VITERBI   -8.2899  0.72955
+STATS LOCAL FORWARD   -3.6203  0.72955
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.36963  1.56055  1.53680  1.13723
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.92825  2.28391  0.95698  2.13014     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   0.23862  2.84929  2.43386  2.70756     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixtyf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:04:31 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2040754891
+STATS LOCAL MSV       -7.4428  0.72807
+STATS LOCAL VITERBI   -8.2000  0.72807
+STATS LOCAL FORWARD   -3.1630  0.72807
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74642  1.22971  1.32523  1.31870
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixtyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:05:34 2012
+NSEQ  6
+EFFN  3.372070
+CKSUM 2895015578
+STATS LOCAL MSV       -7.3878  0.71932
+STATS LOCAL VITERBI   -7.6194  0.71932
+STATS LOCAL FORWARD   -4.0728  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72201  1.29060  1.31826  1.27802
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  0.00000        *
+      1   0.13984  3.39595  2.81210  3.29910      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+      2   3.45117  0.12807  3.49986  2.84213      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+      3   2.95844  3.60364  0.11544  3.50997      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+      4   3.45117  0.12807  3.49986  2.84213      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+      5   0.13984  3.39595  2.81210  3.29910      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+      6   0.13984  3.39595  2.81210  3.29910      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+      7   3.45117  0.12807  3.49986  2.84213      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+      8   3.10447  2.60522  3.15201  0.17614      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+      9   3.10447  2.60522  3.15201  0.17614      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     10   2.95844  3.60364  0.11544  3.50997     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     11   3.45117  0.12807  3.49986  2.84213     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     12   2.95844  3.60364  0.11544  3.50997     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     13   3.45117  0.12807  3.49986  2.84213     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     14   3.45117  0.12807  3.49986  2.84213     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     15   3.10447  2.60522  3.15201  0.17614     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     16   3.45117  0.12807  3.49986  2.84213     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     17   3.10447  2.60522  3.15201  0.17614     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     18   2.41418  0.95592  2.48617  0.81447     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     19   3.10447  2.60522  3.15201  0.17614     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     20   2.95844  3.60364  0.11544  3.50997     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     21   0.13984  3.39595  2.81210  3.29910     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     22   2.95844  3.60364  0.11544  3.50997     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     23   2.95844  3.60364  0.11544  3.50997     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     24   3.45117  0.12807  3.49986  2.84213     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     25   0.13984  3.39595  2.81210  3.29910     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     26   3.10447  2.60522  3.15201  0.17614     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     27   2.95844  3.60364  0.11544  3.50997     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     28   3.10447  2.60522  3.15201  0.17614     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     29   3.45117  0.12807  3.49986  2.84213     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     30   3.10447  2.60522  3.15201  0.17614     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     31   2.95844  3.60364  0.11544  3.50997     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     32   3.10447  2.60522  3.15201  0.17614     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     33   3.10447  2.60522  3.15201  0.17614     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     34   3.10447  2.60522  3.15201  0.17614     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     35   2.95844  3.60364  0.11544  3.50997     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     36   0.13984  3.39595  2.81210  3.29910     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     37   2.95844  3.60364  0.11544  3.50997     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     38   3.10447  2.60522  3.15201  0.17614     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     39   2.95844  3.60364  0.11544  3.50997     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     40   3.45117  0.12807  3.49986  2.84213     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     41   3.45117  0.12807  3.49986  2.84213     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     42   2.95844  3.60364  0.11544  3.50997     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     43   3.45117  0.12807  3.49986  2.84213     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     44   0.13984  3.39595  2.81210  3.29910     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02035  4.02035  1.46634  0.26236  1.09861  0.40547
+     45   3.10447  2.60522  3.15201  0.17614     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01844  4.00224        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixtyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:05:18 2012
+NSEQ  36
+EFFN  4.047363
+CKSUM 1196295191
+STATS LOCAL MSV       -7.3702  0.71933
+STATS LOCAL VITERBI   -7.7286  0.71933
+STATS LOCAL FORWARD   -4.4133  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45008  1.51155  1.41786  1.19518
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  0.00000        *
+      1   3.08666  3.79275  0.09699  3.71956      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+      2   3.51109  0.13660  3.55646  2.66963      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+      3   0.41290  2.85272  1.53771  2.72243      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+      4   3.49070  0.14100  3.53691  2.63205      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+      5   3.66881  0.10529  3.70772  2.99779      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+      6   3.18168  2.41552  3.22691  0.18695      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+      7   3.30202  2.73055  3.34185  0.14776      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+      8   3.30202  2.73055  3.34185  0.14776      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+      9   3.30202  2.73055  3.34185  0.14776      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     10   2.73819  3.64770  0.12680  3.56306     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     11   3.08666  3.79275  0.09699  3.71956     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     12   3.30202  2.73055  3.34185  0.14776     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     13   0.16988  3.29195  2.81025  2.83259     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     14   2.30047  2.53317  2.87742  0.26905     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     15   3.30202  2.73055  3.34185  0.14776     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     16   3.66881  0.10529  3.70772  2.99779     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     17   3.49070  0.14100  3.53691  2.63205     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     18   0.17663  3.36716  2.41372  3.27172     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     19   0.18146  3.35134  2.38258  3.25459     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     20   0.19522  3.30777  2.29970  3.20751     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     21   0.15072  3.45717  2.60401  3.36926     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     22   3.08666  3.79275  0.09699  3.71956     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     23   3.08666  3.79275  0.09699  3.71956     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     24   2.75196  1.55178  2.81459  0.40887     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     25   0.11741  3.58662  2.93481  3.50843     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     26   3.49070  0.14100  3.53691  2.63205     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04815  4.13474  3.47371  1.46634  0.26236  1.09861  0.40547
+     27   0.37011  2.89964  1.65146  2.77218     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03304  4.11964  4.11964  1.46634  0.26236  0.70933  0.67722
+     28   3.66881  0.10529  3.70772  2.99779     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     29   3.66881  0.10529  3.70772  2.99779     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     30   3.30202  2.73055  3.34185  0.14776     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     31   3.08666  3.79275  0.09699  3.71956     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     32   3.30202  2.73055  3.34185  0.14776     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     33   3.30202  2.73055  3.34185  0.14776     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     34   3.30202  2.73055  3.34185  0.14776     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     35   3.08666  3.79275  0.09699  3.71956     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     36   0.11741  3.58662  2.93481  3.50843     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     37   2.53333  3.54105  0.15106  3.44742     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     38   3.30202  2.73055  3.34185  0.14776     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     39   3.08666  3.79275  0.09699  3.71956     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     40   3.30202  2.73055  3.34185  0.14776     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     41   3.66881  0.10529  3.70772  2.99779     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     42   0.11741  3.58662  2.93481  3.50843     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     43   3.10336  2.23715  3.15214  0.21619     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     44   3.08666  3.79275  0.09699  3.71956     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03254  4.13474  4.13474  1.46634  0.26236  1.09861  0.40547
+     45   0.11741  3.58662  2.93481  3.50843     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01640  4.11861        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixtynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:06:15 2012
+NSEQ  4
+EFFN  3.371094
+CKSUM 3562108835
+STATS LOCAL MSV       -7.3552  0.71933
+STATS LOCAL VITERBI   -7.6469  0.71933
+STATS LOCAL FORWARD   -4.1958  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33267  1.69151  1.30646  1.26866
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  0.00000        *
+      1   3.10416  2.60503  3.15172  0.17619      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+      2   2.95822  3.60333  0.11547  3.50963      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+      3   2.95822  3.60333  0.11547  3.50963      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+      4   3.45082  0.12812  3.49952  2.84187      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+      5   0.13988  3.39564  2.81190  3.29876      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+      6   3.45082  0.12812  3.49952  2.84187      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+      7   3.10416  2.60503  3.15172  0.17619      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+      8   2.95822  3.60333  0.11547  3.50963      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+      9   3.10416  2.60503  3.15172  0.17619      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     10   3.10416  2.60503  3.15172  0.17619     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     11   0.13988  3.39564  2.81190  3.29876     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     12   3.45082  0.12812  3.49952  2.84187     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     13   2.95822  3.60333  0.11547  3.50963     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     14   2.60936  1.56743  2.67468  0.43246     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     15   0.13988  3.39564  2.81190  3.29876     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     16   0.13988  3.39564  2.81190  3.29876     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     17   2.95822  3.60333  0.11547  3.50963     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     18   3.10416  2.60503  3.15172  0.17619     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     19   0.13988  3.39564  2.81190  3.29876     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     20   2.95822  3.60333  0.11547  3.50963     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     21   3.45082  0.12812  3.49952  2.84187     21 - -
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+     22   0.13988  3.39564  2.81190  3.29876     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     23   2.95822  3.60333  0.11547  3.50963     23 - -
+          1.38629  1.38629  1.38629  1.38629
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+     24   3.10416  2.60503  3.15172  0.17619     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     25   0.13988  3.39564  2.81190  3.29876     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     26   3.10416  2.60503  3.15172  0.17619     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     27   2.95822  3.60333  0.11547  3.50963     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     28   3.10416  2.60503  3.15172  0.17619     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     29   3.45082  0.12812  3.49952  2.84187     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     30   3.10416  2.60503  3.15172  0.17619     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     31   2.95822  3.60333  0.11547  3.50963     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     32   3.10416  2.60503  3.15172  0.17619     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     35   2.95822  3.60333  0.11547  3.50963     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     37   2.95822  3.60333  0.11547  3.50963     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     40   3.10416  2.60503  3.15172  0.17619     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     41   3.45082  0.12812  3.49952  2.84187     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     43   3.45082  0.12812  3.49952  2.84187     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     44   0.13988  3.39564  2.81190  3.29876     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02018  4.02018  1.46634  0.26236  1.09861  0.40547
+     45   0.13988  3.39564  2.81190  3.29876     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01845  4.00206        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixtyonea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:04:41 2012
+NSEQ  18
+EFFN  3.370605
+CKSUM 568229740
+STATS LOCAL MSV       -7.4719  0.71932
+STATS LOCAL VITERBI   -7.5989  0.71932
+STATS LOCAL FORWARD   -3.9398  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82049  1.21053  1.25453  1.36726
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  0.00000        *
+      1   2.95812  3.60318  0.11549  3.50945      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+      2   3.45064  0.12814  3.49935  2.84174      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+      3   2.95812  3.60318  0.11549  3.50945      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+      4   3.45064  0.12814  3.49935  2.84174      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+      5   3.10400  2.60493  3.15157  0.17622      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+      6   2.98908  0.25519  3.05145  2.05883      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+      7   2.81899  1.97861  2.87714  0.29333      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+      8   3.10400  2.60493  3.15157  0.17622      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+      9   2.95812  3.60318  0.11549  3.50945      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     10   2.95812  3.60318  0.11549  3.50945     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     13   0.13990  3.39548  2.81180  3.29859     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     14   2.95812  3.60318  0.11549  3.50945     14 - -
+          1.38629  1.38629  1.38629  1.38629
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+     15   3.45064  0.12814  3.49935  2.84174     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
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+     19   0.13990  3.39548  2.81180  3.29859     19 - -
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+     25   0.13990  3.39548  2.81180  3.29859     25 - -
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
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+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     36   0.13990  3.39548  2.81180  3.29859     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     42   2.95812  3.60318  0.11549  3.50945     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     43   2.95812  3.60318  0.11549  3.50945     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     44   3.10400  2.60493  3.15157  0.17622     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     45   3.10400  2.60493  3.15157  0.17622     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01845  4.00197        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixtyoneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:04:47 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2470891325
+STATS LOCAL MSV       -7.7856  0.72100
+STATS LOCAL VITERBI   -7.7575  0.72100
+STATS LOCAL FORWARD   -3.5066  0.72100
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.78234  1.29954  1.30321  1.24674
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   1.21118  1.33798  1.26855  1.84174     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixtyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:05:53 2012
+NSEQ  4
+EFFN  3.363281
+CKSUM 2919012323
+STATS LOCAL MSV       -8.0713  0.71931
+STATS LOCAL VITERBI   -7.6572  0.71931
+STATS LOCAL FORWARD   -4.3356  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27137  1.60274  1.37248  1.32905
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  0.00000        *
+      1   2.95651  3.60084  0.11574  3.50687      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      2   3.44798  0.12845  3.49681  2.83981      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      3   0.14020  3.39317  2.81030  3.29606      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      4   3.44798  0.12845  3.49681  2.83981      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      5   3.44798  0.12845  3.49681  2.83981      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      6   2.95651  3.60084  0.11574  3.50687      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      7   3.10166  2.60344  3.14932  0.17659      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      8   0.14020  3.39317  2.81030  3.29606      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      9   3.10166  2.60344  3.14932  0.17659      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     10   2.95651  3.60084  0.11574  3.50687     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     11   0.14020  3.39317  2.81030  3.29606     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     12   2.95651  3.60084  0.11574  3.50687     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     13   3.44798  0.12845  3.49681  2.83981     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     14   0.14020  3.39317  2.81030  3.29606     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     15   0.14020  3.39317  2.81030  3.29606     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     16   3.10166  2.60344  3.14932  0.17659     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     17   2.60750  1.56728  2.67285  0.43292     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     18   2.95651  3.60084  0.11574  3.50687     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     19   3.10166  2.60344  3.14932  0.17659     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     20   0.14020  3.39317  2.81030  3.29606     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     21   3.44798  0.12845  3.49681  2.83981     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     22   2.95651  3.60084  0.11574  3.50687     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     23   2.95651  3.60084  0.11574  3.50687     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     24   3.10166  2.60344  3.14932  0.17659     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     25   0.14020  3.39317  2.81030  3.29606     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     26   3.10166  2.60344  3.14932  0.17659     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     27   0.14020  3.39317  2.81030  3.29606     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     28   3.44798  0.12845  3.49681  2.83981     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     29   3.44798  0.12845  3.49681  2.83981     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     30   3.10166  2.60344  3.14932  0.17659     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     31   2.95651  3.60084  0.11574  3.50687     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     32   3.10166  2.60344  3.14932  0.17659     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     33   3.10166  2.60344  3.14932  0.17659     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     34   3.10166  2.60344  3.14932  0.17659     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     35   2.95651  3.60084  0.11574  3.50687     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     36   0.14020  3.39317  2.81030  3.29606     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     37   2.95651  3.60084  0.11574  3.50687     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     38   0.14020  3.39317  2.81030  3.29606     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     39   0.14020  3.39317  2.81030  3.29606     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     40   3.10166  2.60344  3.14932  0.17659     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     41   3.44798  0.12845  3.49681  2.83981     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     42   2.95651  3.60084  0.11574  3.50687     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     43   3.10166  2.60344  3.14932  0.17659     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     44   0.14020  3.39317  2.81030  3.29606     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     45   0.14020  3.39317  2.81030  3.29606     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01847  4.00063        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixtysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:05:43 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1917973089
+STATS LOCAL MSV       -8.1034  0.72042
+STATS LOCAL VITERBI   -7.7772  0.72042
+STATS LOCAL FORWARD   -4.1239  0.72042
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47252  1.25359  1.31506  1.52917
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   0.15719  3.27118  2.73043  3.16274      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   0.15719  3.27118  2.73043  3.16274      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   3.30705  0.14631  3.36166  2.73626     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   0.15719  3.27118  2.73043  3.16274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.43088  1.34923  2.50068  0.56112     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   3.30705  0.14631  3.36166  2.73626     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixtythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:05:08 2012
+NSEQ  4
+EFFN  3.378906
+CKSUM 2825794943
+STATS LOCAL MSV       -7.6252  0.71932
+STATS LOCAL VITERBI   -7.7478  0.71932
+STATS LOCAL FORWARD   -3.8213  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93667  1.28772  1.25559  1.22074
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  0.00000        *
+      1   2.95993  3.60582  0.11520  3.51237      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      2   3.45365  0.12778  3.50223  2.84393      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      3   2.95993  3.60582  0.11520  3.51237      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      4   3.45365  0.12778  3.50223  2.84393      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      5   3.45365  0.12778  3.50223  2.84393      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      6   3.10665  2.60661  3.15411  0.17580      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      7   3.10665  2.60661  3.15411  0.17580      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      8   3.45365  0.12778  3.50223  2.84393      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      9   0.13956  3.39810  2.81350  3.30145      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     10   2.95993  3.60582  0.11520  3.51237     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     11   2.95993  3.60582  0.11520  3.51237     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     12   3.10665  2.60661  3.15411  0.17580     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     13   2.41540  0.95570  2.48737  0.81419     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     14   3.10665  2.60661  3.15411  0.17580     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     15   0.13956  3.39810  2.81350  3.30145     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     16   3.45365  0.12778  3.50223  2.84393     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     17   3.45365  0.12778  3.50223  2.84393     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     18   3.10665  2.60661  3.15411  0.17580     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     19   2.95993  3.60582  0.11520  3.51237     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     20   2.95993  3.60582  0.11520  3.51237     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     21   0.13956  3.39810  2.81350  3.30145     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     22   2.95993  3.60582  0.11520  3.51237     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     23   2.95993  3.60582  0.11520  3.51237     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     24   3.45365  0.12778  3.50223  2.84393     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     25   0.13956  3.39810  2.81350  3.30145     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     26   3.45365  0.12778  3.50223  2.84393     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     27   2.95993  3.60582  0.11520  3.51237     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     28   3.10665  2.60661  3.15411  0.17580     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     29   3.10665  2.60661  3.15411  0.17580     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     30   3.10665  2.60661  3.15411  0.17580     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     31   3.45365  0.12778  3.50223  2.84393     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     32   3.10665  2.60661  3.15411  0.17580     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     33   3.45365  0.12778  3.50223  2.84393     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     34   3.10665  2.60661  3.15411  0.17580     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     35   3.45365  0.12778  3.50223  2.84393     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     36   0.13956  3.39810  2.81350  3.30145     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     37   2.95993  3.60582  0.11520  3.51237     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     38   3.10665  2.60661  3.15411  0.17580     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     39   2.95993  3.60582  0.11520  3.51237     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     40   3.10665  2.60661  3.15411  0.17580     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     41   3.45365  0.12778  3.50223  2.84393     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     42   2.95993  3.60582  0.11520  3.51237     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     43   2.95993  3.60582  0.11520  3.51237     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     44   3.10665  2.60661  3.15411  0.17580     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     45   3.10665  2.60661  3.15411  0.17580     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01842  4.00349        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_sixtytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 13:04:58 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3005825472
+STATS LOCAL MSV       -8.0324  0.72049
+STATS LOCAL VITERBI   -7.7537  0.72049
+STATS LOCAL FORWARD   -3.8382  0.72049
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71460  1.37701  1.32043  1.20194
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_ten_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:46:47 2012
+NSEQ  107
+EFFN  5.469513
+CKSUM 3702920810
+STATS LOCAL MSV       -6.9710  0.71932
+STATS LOCAL VITERBI   -7.6991  0.71932
+STATS LOCAL FORWARD   -4.0948  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.96459  1.17069  1.18806  1.40721
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  0.00000        *
+      1   3.27426  4.06740  0.07563  4.02433      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+      2   3.99023  0.07941  4.01394  3.22430      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+      3   2.84791  3.94781  0.10280  3.89080      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+      4   3.99023  0.07941  4.01394  3.22430      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+      5   3.80539  0.11576  3.83955  2.72476      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+      6   3.90184  0.09641  3.93063  2.95505      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+      7   2.36951  3.72816  0.15506  3.64689      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+      8   2.18561  0.67019  1.37666  2.09103      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+      9   2.90642  0.48164  2.97253  1.28595      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     10   0.41086  3.06468  1.43776  2.94138     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     11   3.27426  4.06740  0.07563  4.02433     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     12   2.63635  1.45385  2.85884  0.45040     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     13   0.09024  3.87871  3.12622  3.82931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     14   3.24015  1.90941  3.28830  0.25443     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     15   3.51655  2.57190  3.55012  0.14481     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     16   3.99023  0.07941  4.01394  3.22430     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     17   2.94055  1.36918  3.00114  0.44143     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     18   2.52055  3.80899  0.13517  3.73608     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     19   2.19668  1.40915  0.63741  2.15572     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     20   3.55650  0.17290  3.60266  2.27313     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     21   2.90697  3.96805  0.09819  3.91349     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     22   2.79322  3.92785  0.10736  3.86845     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     23   3.27426  4.06740  0.07563  4.02433     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     24   3.83135  0.11045  3.86411  2.78217     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     25   0.10702  3.76582  3.08529  3.42258     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     26   3.57586  2.76328  3.60593  0.12583     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     27   3.27426  4.06740  0.07563  4.02433     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     28   3.99023  0.07941  4.01394  3.22430     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     29   3.99023  0.07941  4.01394  3.22430     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     30   3.52926  2.61077  3.56209  0.14062     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     31   3.01979  4.00315  0.09022  3.95285     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     32   3.57586  2.76328  3.60593  0.12583     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     33   2.89367  1.28100  2.95598  0.48639     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     34   3.80211  0.11644  3.83645  2.71770     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     35   3.01692  4.00231  0.09041  3.95191     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     36   0.09024  3.87871  3.12622  3.82931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     37   3.27426  4.06740  0.07563  4.02433     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     38   3.99023  0.07941  4.01394  3.22430     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     39   3.27426  4.06740  0.07563  4.02433     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     40   3.62336  2.93877  3.65065  0.11160     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     41   3.59049  0.10504  3.84397  2.98140     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     42   0.20299  3.01956  2.85242  2.56154     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     43   3.37743  2.71282  3.05366  0.15978     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     44   3.36967  2.72811  3.02203  0.16069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02642  4.33984  4.33984  1.46634  0.26236  1.09861  0.40547
+     45   1.65173  2.45270  2.44628  0.45318     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01330  4.32671        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:47:49 2012
+NSEQ  6
+EFFN  3.436523
+CKSUM 1296343504
+STATS LOCAL MSV       -7.3313  0.71932
+STATS LOCAL VITERBI   -7.8780  0.71932
+STATS LOCAL FORWARD   -4.0002  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72424  1.37103  1.34814  1.17725
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  0.00000        *
+      1   2.97231  3.62392  0.11328  3.53237      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      2   3.47427  0.12540  3.52197  2.85887      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      3   2.97231  3.62392  0.11328  3.53237      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      4   3.47427  0.12540  3.52197  2.85887      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      5   3.47427  0.12540  3.52197  2.85887      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      6   3.47427  0.12540  3.52197  2.85887      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      7   0.13726  3.41603  2.82510  3.32110      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      8   3.12486  2.61817  3.17162  0.17294      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      9   3.12486  2.61817  3.17162  0.17294      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     10   0.13726  3.41603  2.82510  3.32110     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     11   2.97231  3.62392  0.11328  3.53237     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     12   3.12486  2.61817  3.17162  0.17294     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     13   0.13726  3.41603  2.82510  3.32110     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     14   3.12486  2.61817  3.17162  0.17294     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     15   3.12486  2.61817  3.17162  0.17294     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     16   3.47427  0.12540  3.52197  2.85887     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     17   3.12486  2.61817  3.17162  0.17294     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     18   0.13726  3.41603  2.82510  3.32110     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     19   2.16537  2.28347  0.67203  1.29942     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     20   3.12486  2.61817  3.17162  0.17294     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     21   2.97231  3.62392  0.11328  3.53237     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     22   2.97231  3.62392  0.11328  3.53237     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     23   2.97231  3.62392  0.11328  3.53237     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     24   3.47427  0.12540  3.52197  2.85887     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     25   0.13726  3.41603  2.82510  3.32110     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     26   3.12486  2.61817  3.17162  0.17294     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     27   2.97231  3.62392  0.11328  3.53237     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     28   3.47427  0.12540  3.52197  2.85887     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     29   3.47427  0.12540  3.52197  2.85887     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     30   3.12486  2.61817  3.17162  0.17294     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     31   2.97231  3.62392  0.11328  3.53237     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     32   3.12486  2.61817  3.17162  0.17294     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     33   3.12486  2.61817  3.17162  0.17294     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     34   3.47427  0.12540  3.52197  2.85887     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     35   2.97231  3.62392  0.11328  3.53237     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     36   0.13726  3.41603  2.82510  3.32110     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     37   2.97231  3.62392  0.11328  3.53237     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     38   3.47427  0.12540  3.52197  2.85887     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     39   2.97231  3.62392  0.11328  3.53237     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     40   3.12486  2.61817  3.17162  0.17294     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     41   3.47427  0.12540  3.52197  2.85887     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     42   0.13726  3.41603  2.82510  3.32110     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     43   3.12486  2.61817  3.17162  0.17294     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     44   3.12486  2.61817  3.17162  0.17294     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     45   3.12486  2.61817  3.17162  0.17294     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01823  4.01395        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:53:25 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2677580612
+STATS LOCAL MSV       -7.5949  0.72867
+STATS LOCAL VITERBI   -8.2619  0.72867
+STATS LOCAL FORWARD   -3.4585  0.72867
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45253  1.64256  1.36949  1.14476
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirtyeighta_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:56:46 2012
+NSEQ  68
+EFFN  4.262451
+CKSUM 3743148177
+STATS LOCAL MSV       -7.0952  0.71932
+STATS LOCAL VITERBI   -7.6154  0.71932
+STATS LOCAL FORWARD   -4.2218  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74392  1.31676  1.19767  1.36544
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  0.00000        *
+      1   0.11195  3.63913  2.96859  3.56620      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+      2   3.72789  0.09993  3.76402  3.03945      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+      3   3.12084  3.84347  0.09261  3.77593      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+      4   3.72789  0.09993  3.76402  3.03945      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+      5   3.35808  2.76624  3.39568  0.14066      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+      6   3.72789  0.09993  3.76402  3.03945      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+      7   3.72789  0.09993  3.76402  3.03945      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+      8   2.69244  0.52841  2.76163  1.27455      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+      9   3.28812  2.56823  3.32899  0.16231      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     10   3.12084  3.84347  0.09261  3.77593     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     11   3.12084  3.84347  0.09261  3.77593     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     12   3.13996  2.21391  3.18787  0.21544     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     13   0.11195  3.63913  2.96859  3.56620     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     14   3.35808  2.76624  3.39568  0.14066     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     15   3.35808  2.76624  3.39568  0.14066     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     16   3.62514  0.11947  3.66577  2.80710     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     17   3.63143  0.11823  3.67179  2.82018     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     18   3.00740  3.59699  0.12731  3.15331     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     19   1.12237  2.72393  0.62845  2.58418     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     20   2.83544  3.73509  0.11467  3.65848     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     21   3.12084  3.84347  0.09261  3.77593     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     22   0.11195  3.63913  2.96859  3.56620     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     23   3.12084  3.84347  0.09261  3.77593     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     24   3.72789  0.09993  3.76402  3.03945     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     25   0.11195  3.63913  2.96859  3.56620     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     26   2.80234  0.42376  2.86956  1.47830     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     27   2.30378  3.45032  0.18240  3.34915     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     28   3.63668  0.11719  3.67680  2.83117     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     29   3.72789  0.09993  3.76402  3.03945     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     30   3.35808  2.76624  3.39568  0.14066     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     31   3.12084  3.84347  0.09261  3.77593     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     32   3.35808  2.76624  3.39568  0.14066     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     33   3.35808  2.76624  3.39568  0.14066     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     34   2.58185  0.74573  2.65233  0.96893     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     35   3.12084  3.84347  0.09261  3.77593     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     36   0.11195  3.63913  2.96859  3.56620     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     37   3.12084  3.84347  0.09261  3.77593     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     38   3.18860  2.32282  3.23426  0.19676     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     39   3.12084  3.84347  0.09261  3.77593     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     40   3.35808  2.76624  3.39568  0.14066     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     41   3.53123  0.13892  3.57597  2.62487     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     42   0.87476  2.51732  0.91467  2.28562     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     43   3.23315  2.42844  3.27668  0.18076     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     44   2.76473  3.56651  0.13835  3.27126     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03144  4.16859  4.16859  1.46634  0.26236  1.09861  0.40547
+     45   0.12988  3.56731  2.76407  3.48889     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01584  4.15300        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirtyeightb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:56:54 2012
+NSEQ  8
+EFFN  3.378906
+CKSUM 1843230565
+STATS LOCAL MSV       -7.3773  0.71931
+STATS LOCAL VITERBI   -7.6045  0.71931
+STATS LOCAL FORWARD   -4.3772  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.56462  1.52276  1.31393  1.19086
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  0.00000        *
+      1   0.13956  3.39810  2.81350  3.30145      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      2   3.45365  0.12778  3.50223  2.84393      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      3   2.95993  3.60582  0.11520  3.51237      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      4   3.45365  0.12778  3.50223  2.84393      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      5   3.10665  2.60661  3.15411  0.17580      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      6   3.45365  0.12778  3.50223  2.84393      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      7   3.10665  2.60661  3.15411  0.17580      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      8   3.10665  2.60661  3.15411  0.17580      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      9   3.10665  2.60661  3.15411  0.17580      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     10   2.95993  3.60582  0.11520  3.51237     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     11   2.95993  3.60582  0.11520  3.51237     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     12   3.10665  2.60661  3.15411  0.17580     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     13   0.13956  3.39810  2.81350  3.30145     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     14   3.10665  2.60661  3.15411  0.17580     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     15   3.10665  2.60661  3.15411  0.17580     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     16   3.45365  0.12778  3.50223  2.84393     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     17   3.45365  0.12778  3.50223  2.84393     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     18   2.95993  3.60582  0.11520  3.51237     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     19   0.13956  3.39810  2.81350  3.30145     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     20   0.13956  3.39810  2.81350  3.30145     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     21   2.95993  3.60582  0.11520  3.51237     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     22   0.13956  3.39810  2.81350  3.30145     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     23   2.95993  3.60582  0.11520  3.51237     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     24   3.45365  0.12778  3.50223  2.84393     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     25   0.13956  3.39810  2.81350  3.30145     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     26   3.10665  2.60661  3.15411  0.17580     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     27   2.95993  3.60582  0.11520  3.51237     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     28   3.45365  0.12778  3.50223  2.84393     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     29   3.45365  0.12778  3.50223  2.84393     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     30   3.10665  2.60661  3.15411  0.17580     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     31   2.95993  3.60582  0.11520  3.51237     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     32   3.10665  2.60661  3.15411  0.17580     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     33   3.10665  2.60661  3.15411  0.17580     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     34   3.10665  2.60661  3.15411  0.17580     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     35   2.95993  3.60582  0.11520  3.51237     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     36   0.13956  3.39810  2.81350  3.30145     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     37   2.95993  3.60582  0.11520  3.51237     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     38   3.10665  2.60661  3.15411  0.17580     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     39   2.95993  3.60582  0.11520  3.51237     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     40   3.10665  2.60661  3.15411  0.17580     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     41   3.45365  0.12778  3.50223  2.84393     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     42   0.13956  3.39810  2.81350  3.30145     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     43   3.10665  2.60661  3.15411  0.17580     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     44   2.95993  3.60582  0.11520  3.51237     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     45   0.33107  2.69976  2.46700  2.04189     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01842  4.00349        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirtyfivea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:55:18 2012
+NSEQ  21
+EFFN  3.791382
+CKSUM 3821025216
+STATS LOCAL MSV       -6.9002  0.71932
+STATS LOCAL VITERBI   -7.6925  0.71932
+STATS LOCAL FORWARD   -4.2802  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.78024  1.42041  1.17666  1.26769
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  0.00000        *
+      1   3.04218  3.72681  0.10302  3.64634      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+      2   3.59240  0.11272  3.63484  2.94361      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+      3   2.33472  3.36657  0.18602  3.25981      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+      4   3.59240  0.11272  3.63484  2.94361      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+      5   3.59240  0.11272  3.63484  2.94361      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+      6   3.59240  0.11272  3.63484  2.94361      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+      7   3.23117  2.68559  3.27379  0.15730      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+      8   2.49098  0.98188  2.56176  0.76487      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+      9   3.23117  2.68559  3.27379  0.15730      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     10   3.04218  3.72681  0.10302  3.64634     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     11   3.04218  3.72681  0.10302  3.64634     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     12   3.23117  2.68559  3.27379  0.15730     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     13   0.12483  3.51924  2.89156  3.43437     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     14   3.23117  2.68559  3.27379  0.15730     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     15   3.23117  2.68559  3.27379  0.15730     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     16   3.59240  0.11272  3.63484  2.94361     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     17   3.59240  0.11272  3.63484  2.94361     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     18   3.04218  3.72681  0.10302  3.64634     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     19   0.80163  2.59293  0.94079  2.45010     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     20   0.12483  3.51924  2.89156  3.43437     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     21   3.04218  3.72681  0.10302  3.64634     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     22   3.04218  3.72681  0.10302  3.64634     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     23   3.04218  3.72681  0.10302  3.64634     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     24   3.17214  0.21391  3.22953  2.19739     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     25   0.12483  3.51924  2.89156  3.43437     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     26   2.87950  1.90169  2.93667  0.29911     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     27   2.12059  3.22754  0.22833  3.11169     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     28   3.59240  0.11272  3.63484  2.94361     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     29   3.59240  0.11272  3.63484  2.94361     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     30   3.23117  2.68559  3.27379  0.15730     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     31   3.04218  3.72681  0.10302  3.64634     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     32   3.23117  2.68559  3.27379  0.15730     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     33   3.23117  2.68559  3.27379  0.15730     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     34   3.23117  2.68559  3.27379  0.15730     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     35   3.04218  3.72681  0.10302  3.64634     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     36   0.12483  3.51924  2.89156  3.43437     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     37   3.04218  3.72681  0.10302  3.64634     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     38   3.23117  2.68559  3.27379  0.15730     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     39   3.04218  3.72681  0.10302  3.64634     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     40   3.23117  2.68559  3.27379  0.15730     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     41   3.59240  0.11272  3.63484  2.94361     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     42   0.12483  3.51924  2.89156  3.43437     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     43   3.23117  2.68559  3.27379  0.15730     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     44   3.04218  3.72681  0.10302  3.64634     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03395  4.09291  4.09291  1.46634  0.26236  1.09861  0.40547
+     45   0.25867  2.92988  2.61643  2.28816     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01712  4.07608        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirtyfiveb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:55:28 2012
+NSEQ  7
+EFFN  3.790527
+CKSUM 754801534
+STATS LOCAL MSV       -7.0218  0.71932
+STATS LOCAL VITERBI   -7.6312  0.71932
+STATS LOCAL FORWARD   -4.4210  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62204  1.50143  1.29548  1.18441
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  0.00000        *
+      1   3.04202  3.72657  0.10304  3.64608      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+      2   3.59213  0.11274  3.63458  2.94342      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+      3   0.12486  3.51901  2.89141  3.43411      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+      4   3.59213  0.11274  3.63458  2.94342      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+      5   3.59213  0.11274  3.63458  2.94342      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+      6   3.59213  0.11274  3.63458  2.94342      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+      7   3.23093  2.68543  3.27356  0.15734      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+      8   3.23093  2.68543  3.27356  0.15734      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+      9   3.23093  2.68543  3.27356  0.15734      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     10   3.04202  3.72657  0.10304  3.64608     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     11   3.04202  3.72657  0.10304  3.64608     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     12   2.65666  1.47373  2.72170  0.45415     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     13   0.12486  3.51901  2.89141  3.43411     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     14   3.23093  2.68543  3.27356  0.15734     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     15   3.23093  2.68543  3.27356  0.15734     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     16   3.59213  0.11274  3.63458  2.94342     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     17   3.59213  0.11274  3.63458  2.94342     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     18   1.53840  2.84493  0.41462  2.70981     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     19   0.12486  3.51901  2.89141  3.43411     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     20   0.12486  3.51901  2.89141  3.43411     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     21   3.04202  3.72657  0.10304  3.64608     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     22   3.04202  3.72657  0.10304  3.64608     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     23   3.04202  3.72657  0.10304  3.64608     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     24   3.23093  2.68543  3.27356  0.15734     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     25   0.12486  3.51901  2.89141  3.43411     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     26   3.23093  2.68543  3.27356  0.15734     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     27   3.04202  3.72657  0.10304  3.64608     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     28   3.59213  0.11274  3.63458  2.94342     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     29   3.59213  0.11274  3.63458  2.94342     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     30   3.23093  2.68543  3.27356  0.15734     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     31   3.04202  3.72657  0.10304  3.64608     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     32   3.23093  2.68543  3.27356  0.15734     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     33   3.23093  2.68543  3.27356  0.15734     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     34   3.23093  2.68543  3.27356  0.15734     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     35   3.04202  3.72657  0.10304  3.64608     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     36   0.12486  3.51901  2.89141  3.43411     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     37   3.04202  3.72657  0.10304  3.64608     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     38   3.23093  2.68543  3.27356  0.15734     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     39   1.03179  2.61695  0.72078  2.47415     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     40   3.23093  2.68543  3.27356  0.15734     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     41   3.59213  0.11274  3.63458  2.94342     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     42   0.56349  2.38971  2.30337  1.43044     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     43   3.23093  2.68543  3.27356  0.15734     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     44   3.04202  3.72657  0.10304  3.64608     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09276  4.09276  1.46634  0.26236  1.09861  0.40547
+     45   0.12486  3.51901  2.89141  3.43411     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01712  4.07593        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirtyfivec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:55:34 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1704710249
+STATS LOCAL MSV       -7.3363  0.72800
+STATS LOCAL VITERBI   -8.2242  0.72800
+STATS LOCAL FORWARD   -3.5530  0.72800
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66396  1.33666  1.26647  1.32401
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.81865  0.23582  2.88868  2.35662     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirtyfived_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:55:40 2012
+NSEQ  110
+EFFN  6.764221
+CKSUM 1981618649
+STATS LOCAL MSV       -6.9716  0.71932
+STATS LOCAL VITERBI   -7.5695  0.71932
+STATS LOCAL FORWARD   -4.4100  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.84900  1.43502  1.19807  1.19495
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  0.00000        *
+      1   3.39538  4.23343  0.06500  4.20623      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+      2   4.08480  0.08881  4.10667  2.96253      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+      3   2.40193  3.46095  0.15875  3.69508      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+      4   4.18305  0.06704  4.19835  3.36476      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+      5   2.95261  0.85562  3.01756  0.74685      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+      6   3.69215  0.18213  3.73568  2.13932      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+      7   2.40789  1.30046  1.71361  0.78225      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+      8   2.46629  1.01170  2.75821  0.71724      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+      9   3.71365  2.55209  3.74161  0.13470      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     10   3.05401  4.17442  0.08174  4.13917     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     11   3.39538  4.23343  0.06500  4.20623     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     12   3.69066  2.47453  3.72010  0.14317     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     13   0.07628  4.06423  3.25686  4.03114     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     14   3.75561  2.70729  3.78082  0.11981     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     15   3.72623  2.59666  3.75338  0.13016     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     16   4.18305  0.06704  4.19835  3.36476     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     17   3.96381  0.11560  3.99323  2.63469     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     18   3.06377  4.17648  0.08117  4.14153     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     19   0.62591  3.05731  1.00865  2.92803     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     20   0.85700  1.75114  1.19938  2.29651     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     21   3.07763  4.17938  0.08037  4.14484     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     22   0.75860  3.02601  0.84899  2.89453     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     23   3.06377  4.17648  0.08117  4.14153     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     24   3.86707  0.13787  3.90195  2.43426     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     25   0.07628  4.06423  3.25686  4.03114     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     26   3.75147  2.69109  3.77695  0.12124     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     27   3.39538  4.23343  0.06500  4.20623     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     28   3.69252  0.18203  3.73604  2.13990     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     29   4.18305  0.06704  4.19835  3.36476     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     30   3.79015  2.85117  3.81304  0.10809     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     31   3.39538  4.23343  0.06500  4.20623     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     32   3.83882  3.08703  3.85842  0.09240     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     33   3.83882  3.08703  3.85842  0.09240     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     34   3.83882  3.08703  3.85842  0.09240     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     35   3.36455  3.75967  0.07712  4.11318     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     36   0.07628  4.06423  3.25686  4.03114     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     37   3.39538  4.23343  0.06500  4.20623     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     38   3.07105  2.54345  3.53138  0.16751     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     39   3.16523  3.48098  0.09597  3.98832     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     40   3.72814  2.60356  3.75516  0.12948     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     41   4.12618  0.07970  4.14529  3.10947     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     42   0.31693  3.07546  2.01098  2.39039     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     43   3.63765  2.86603  3.24732  0.13024     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     44   2.43294  2.32232  0.94151  0.85770     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02256  4.49583  4.49583  1.46634  0.26236  1.09861  0.40547
+     45   0.44786  2.46019  1.97075  1.99337     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01135  4.48461        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirtyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:55:05 2012
+NSEQ  14
+EFFN  3.674316
+CKSUM 4026790460
+STATS LOCAL MSV       -7.4351  0.71933
+STATS LOCAL VITERBI   -7.6455  0.71933
+STATS LOCAL FORWARD   -4.2563  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.85672  1.35730  1.23154  1.22207
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  0.00000        *
+      1   3.02027  3.69442  0.10613  3.61043      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+      2   3.55507  0.11656  3.59920  2.91697      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+      3   3.02027  3.69442  0.10613  3.61043      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+      4   3.55507  0.11656  3.59920  2.91697      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+      5   2.83767  1.87380  2.89604  0.31108      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+      6   3.55507  0.11656  3.59920  2.91697      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+      7   3.55507  0.11656  3.59920  2.91697      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+      8   1.40213  2.22571  2.32864  0.60055      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+      9   3.00169  2.20197  3.05363  0.23253      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     10   3.02027  3.69442  0.10613  3.61043     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     11   3.02027  3.69442  0.10613  3.61043     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     12   3.19718  2.66404  3.24113  0.16212     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     13   0.12863  3.48651  2.87054  3.39842     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     14   3.19718  2.66404  3.24113  0.16212     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     15   3.19718  2.66404  3.24113  0.16212     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     16   3.55507  0.11656  3.59920  2.91697     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     17   3.55507  0.11656  3.59920  2.91697     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     18   0.45681  2.74344  1.47534  2.60848     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     19   3.19718  2.66404  3.24113  0.16212     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     20   3.02027  3.69442  0.10613  3.61043     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     21   3.02027  3.69442  0.10613  3.61043     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     22   0.26587  3.05720  2.01313  2.93987     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     23   3.02027  3.69442  0.10613  3.61043     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     24   3.55507  0.11656  3.59920  2.91697     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     25   0.12863  3.48651  2.87054  3.39842     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     26   3.00540  2.20984  3.05718  0.23100     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     27   3.02027  3.69442  0.10613  3.61043     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     28   3.55507  0.11656  3.59920  2.91697     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     29   3.55507  0.11656  3.59920  2.91697     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     30   3.19718  2.66404  3.24113  0.16212     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     31   3.02027  3.69442  0.10613  3.61043     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     32   3.19718  2.66404  3.24113  0.16212     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     33   3.19718  2.66404  3.24113  0.16212     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     34   3.19718  2.66404  3.24113  0.16212     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     35   3.02027  3.69442  0.10613  3.61043     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     36   0.12863  3.48651  2.87054  3.39842     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     37   3.02027  3.69442  0.10613  3.61043     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     38   3.19718  2.66404  3.24113  0.16212     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     39   3.02027  3.69442  0.10613  3.61043     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     40   3.19718  2.66404  3.24113  0.16212     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     41   3.55507  0.11656  3.59920  2.91697     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     42   0.12863  3.48651  2.87054  3.39842     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     43   3.55507  0.11656  3.59920  2.91697     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     44   3.02027  3.69442  0.10613  3.61043     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07317  4.07317  1.46634  0.26236  1.09861  0.40547
+     45   3.19718  2.66404  3.24113  0.16212     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01747  4.05601        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirtyninea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:57:08 2012
+NSEQ  19
+EFFN  3.465088
+CKSUM 264407544
+STATS LOCAL MSV       -7.2989  0.71933
+STATS LOCAL VITERBI   -7.6666  0.71933
+STATS LOCAL FORWARD   -4.3058  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.64354  1.34640  1.31031  1.28449
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  0.00000        *
+      1   3.48434  0.12426  3.53160  2.86615      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+      2   2.97834  3.63274  0.11235  3.54213      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+      3   3.48434  0.12426  3.53160  2.86615      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+      4   3.48434  0.12426  3.53160  2.86615      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+      5   3.48434  0.12426  3.53160  2.86615      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+      6   2.85357  2.00168  2.91071  0.28393      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+      7   3.13378  2.62384  3.18020  0.17156      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+      8   3.13378  2.62384  3.18020  0.17156      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+      9   2.97834  3.63274  0.11235  3.54213      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     10   2.97834  3.63274  0.11235  3.54213     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     11   3.48434  0.12426  3.53160  2.86615     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     12   2.42998  0.91705  2.50191  0.84319     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     13   0.13615  3.42479  2.83077  3.33071     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     14   3.13378  2.62384  3.18020  0.17156     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     15   3.13378  2.62384  3.18020  0.17156     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     16   3.48434  0.12426  3.53160  2.86615     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     17   3.48434  0.12426  3.53160  2.86615     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     18   2.97834  3.63274  0.11235  3.54213     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     19   0.13615  3.42479  2.83077  3.33071     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     20   0.23841  3.09191  2.15619  2.97707     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     21   2.97834  3.63274  0.11235  3.54213     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     22   2.97834  3.63274  0.11235  3.54213     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     23   2.97834  3.63274  0.11235  3.54213     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     24   3.48434  0.12426  3.53160  2.86615     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     25   0.13615  3.42479  2.83077  3.33071     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     26   3.13378  2.62384  3.18020  0.17156     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     27   2.97834  3.63274  0.11235  3.54213     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     28   3.48434  0.12426  3.53160  2.86615     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     29   3.48434  0.12426  3.53160  2.86615     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     30   3.13378  2.62384  3.18020  0.17156     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     31   2.97834  3.63274  0.11235  3.54213     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     32   3.13378  2.62384  3.18020  0.17156     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     33   3.13378  2.62384  3.18020  0.17156     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     34   3.13378  2.62384  3.18020  0.17156     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     35   2.97834  3.63274  0.11235  3.54213     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     36   0.13615  3.42479  2.83077  3.33071     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     37   2.97834  3.63274  0.11235  3.54213     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     38   3.13378  2.62384  3.18020  0.17156     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     39   0.13615  3.42479  2.83077  3.33071     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     40   3.13378  2.62384  3.18020  0.17156     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     41   3.48434  0.12426  3.53160  2.86615     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     42   0.13615  3.42479  2.83077  3.33071     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     43   3.13378  2.62384  3.18020  0.17156     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     44   2.97834  3.63274  0.11235  3.54213     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03594  4.03691  4.03691  1.46634  0.26236  1.09861  0.40547
+     45   0.13615  3.42479  2.83077  3.33071     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01813  4.01910        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirtynineb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:57:19 2012
+NSEQ  5
+EFFN  3.422852
+CKSUM 1805487762
+STATS LOCAL MSV       -7.4783  0.71932
+STATS LOCAL VITERBI   -7.7773  0.71932
+STATS LOCAL FORWARD   -4.3698  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.67734  1.37211  1.36623  1.18911
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  0.00000        *
+      1   3.46942  0.12596  3.51732  2.85535      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+      2   2.96940  3.61966  0.11373  3.52767      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+      3   3.46942  0.12596  3.51732  2.85535      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+      4   3.12056  2.61545  3.16749  0.17361      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+      5   3.46942  0.12596  3.51732  2.85535      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+      6   3.12056  2.61545  3.16749  0.17361      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+      7   3.12056  2.61545  3.16749  0.17361      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+      8   3.12056  2.61545  3.16749  0.17361      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+      9   2.96940  3.61966  0.11373  3.52767      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     10   2.96940  3.61966  0.11373  3.52767     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     11   3.46942  0.12596  3.51732  2.85535     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     12   3.46942  0.12596  3.51732  2.85535     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     13   0.13780  3.41180  2.82237  3.31647     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     14   3.12056  2.61545  3.16749  0.17361     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     15   3.12056  2.61545  3.16749  0.17361     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     16   3.46942  0.12596  3.51732  2.85535     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     17   3.46942  0.12596  3.51732  2.85535     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     18   0.63322  2.57555  1.18661  2.43321     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     19   0.13780  3.41180  2.82237  3.31647     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     20   0.13780  3.41180  2.82237  3.31647     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     21   2.96940  3.61966  0.11373  3.52767     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     22   0.13780  3.41180  2.82237  3.31647     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     23   2.96940  3.61966  0.11373  3.52767     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     24   3.46942  0.12596  3.51732  2.85535     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     25   0.13780  3.41180  2.82237  3.31647     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     26   3.12056  2.61545  3.16749  0.17361     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     27   2.96940  3.61966  0.11373  3.52767     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     28   3.46942  0.12596  3.51732  2.85535     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     29   3.46942  0.12596  3.51732  2.85535     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     30   3.12056  2.61545  3.16749  0.17361     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     31   2.96940  3.61966  0.11373  3.52767     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     32   3.12056  2.61545  3.16749  0.17361     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     33   3.12056  2.61545  3.16749  0.17361     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     34   3.12056  2.61545  3.16749  0.17361     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     35   2.96940  3.61966  0.11373  3.52767     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     36   0.13780  3.41180  2.82237  3.31647     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     37   2.96940  3.61966  0.11373  3.52767     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     38   3.12056  2.61545  3.16749  0.17361     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     39   2.96940  3.61966  0.11373  3.52767     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     40   3.12056  2.61545  3.16749  0.17361     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     41   3.46942  0.12596  3.51732  2.85535     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     42   0.13780  3.41180  2.82237  3.31647     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     43   3.12056  2.61545  3.16749  0.17361     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     44   3.12056  2.61545  3.16749  0.17361     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03622  4.02942  4.02942  1.46634  0.26236  1.09861  0.40547
+     45   2.96940  3.61966  0.11373  3.52767     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01827  4.01148        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirtyninec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:57:25 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1983370454
+STATS LOCAL MSV       -7.5108  0.72845
+STATS LOCAL VITERBI   -8.3051  0.72845
+STATS LOCAL FORWARD   -3.5039  0.72845
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.58494  1.50446  1.31973  1.18517
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
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+          1.38629  1.38629  1.38629  1.38629
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+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirtyonea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:53:36 2012
+NSEQ  7
+EFFN  3.339355
+CKSUM 1527527692
+STATS LOCAL MSV       -8.2684  0.71933
+STATS LOCAL VITERBI   -7.6857  0.71933
+STATS LOCAL FORWARD   -4.0354  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81911  1.43203  1.13792  1.27827
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01446  4.01446  1.46634  0.26236  0.00000        *
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+      2   3.43924  0.12948  3.48844  2.83346      2 - -
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+     42   2.95124  3.59315  0.11657  3.49839     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01446  4.01446  1.46634  0.26236  1.09861  0.40547
+     43   3.09399  2.59856  3.14194  0.17781     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01446  4.01446  1.46634  0.26236  1.09861  0.40547
+     44   2.95124  3.59315  0.11657  3.49839     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01446  4.01446  1.46634  0.26236  1.09861  0.40547
+     45   0.14119  3.38559  2.80538  3.28775     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01856  3.99625        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirtyoneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:54:01 2012
+NSEQ  831
+EFFN  4.384129
+CKSUM 3394769104
+STATS LOCAL MSV       -7.4985  0.71932
+STATS LOCAL VITERBI   -7.6585  0.71932
+STATS LOCAL FORWARD   -4.1886  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.79128  1.43153  1.21796  1.20906
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  0.00000        *
+      1   3.13904  3.87045  0.09038  3.80592      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+      2   3.75608  0.09779  3.79086  3.05308      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+      3   2.72620  3.70942  0.12383  3.63037      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+      4   3.75939  0.09719  3.79403  3.06160      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+      5   3.06989  2.01298  3.12140  0.25375      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+      6   3.58135  0.13191  3.62407  2.67267      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+      7   3.10440  0.16267  3.40840  2.62855      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+      8   3.25839  2.42797  3.30114  0.17854      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+      9   3.33177  2.61945  3.37088  0.15424      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     10   3.00040  3.82338  0.09984  3.75507     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     11   3.13904  3.87045  0.09038  3.80592     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     12   3.07664  2.47074  3.24129  0.18603     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     13   0.12364  3.57253  2.95000  3.32761     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     14   3.10851  2.60497  3.28751  0.16951     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     15   3.35477  2.68459  3.39276  0.14709     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     16   3.75939  0.09719  3.79403  3.06160     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     17   3.51541  0.14626  3.56098  2.55202     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     18   2.88519  3.68950  0.11947  3.44891     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     19   0.13245  3.57492  2.72183  3.49718     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     20   2.83309  3.55397  0.13948  3.15252     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     21   2.93763  3.79982  0.10467  3.72936     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     22   0.20844  3.32059  2.18860  3.22022     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     23   3.13904  3.87045  0.09038  3.80592     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     24   3.54916  0.13880  3.59329  2.61267     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     25   0.11726  3.63430  2.88505  3.56177     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     26   3.32391  2.59783  3.36342  0.15673     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     27   3.02164  3.83104  0.09829  3.76340     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     28   3.69439  0.10930  3.73196  2.90532     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     29   3.68441  0.11121  3.72244  2.88307     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     30   3.31159  2.56450  3.35171  0.16069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     31   3.13904  3.87045  0.09038  3.80592     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     32   3.38846  2.78567  3.42487  0.13697     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     33   3.35464  2.68420  3.39263  0.14713     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     34   3.31676  2.57839  3.35662  0.15902     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     35   3.13904  3.87045  0.09038  3.80592     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     36   0.12068  3.62063  2.84545  3.54697     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     37   3.13904  3.87045  0.09038  3.80592     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     38   3.03377  2.59614  3.15605  0.18067     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     39   2.87363  3.54328  0.11920  3.61347     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     40   3.34897  2.66790  3.38724  0.14887     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     41   3.70404  0.10747  3.74116  2.92722     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     42   0.24375  3.03868  2.51880  2.43202     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     43   3.08194  2.54512  2.79831  0.20487     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     44   1.99202  2.02064  1.07213  0.94487     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.18725  4.18725  1.46634  0.26236  1.09861  0.40547
+     45   0.65872  2.19971  1.83802  1.54872     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01554  4.17194        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirtyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:56:32 2012
+NSEQ  5
+EFFN  3.276367
+CKSUM 3808487661
+STATS LOCAL MSV       -7.9182  0.71931
+STATS LOCAL VITERBI   -7.8705  0.71931
+STATS LOCAL FORWARD   -4.3289  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63517  1.38057  1.31765  1.25218
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  0.00000        *
+      1   2.93708  3.57257  0.11883  3.47567      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      2   3.41588  0.13228  3.46607  2.81644      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      3   0.14388  3.36532  2.79221  3.26557      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      4   3.41588  0.13228  3.46607  2.81644      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      5   3.41588  0.13228  3.46607  2.81644      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      6   3.41588  0.13228  3.46607  2.81644      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      7   3.07355  2.58556  3.12228  0.18112      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      8   3.07355  2.58556  3.12228  0.18112      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      9   3.07355  2.58556  3.12228  0.18112      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     10   2.93708  3.57257  0.11883  3.47567     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     11   2.93708  3.57257  0.11883  3.47567     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     12   3.07355  2.58556  3.12228  0.18112     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     13   0.14388  3.36532  2.79221  3.26557     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     14   3.07355  2.58556  3.12228  0.18112     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     15   3.07355  2.58556  3.12228  0.18112     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     16   3.41588  0.13228  3.46607  2.81644     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     17   3.41588  0.13228  3.46607  2.81644     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     18   2.93708  3.57257  0.11883  3.47567     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     19   0.14388  3.36532  2.79221  3.26557     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     20   0.14388  3.36532  2.79221  3.26557     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     21   2.93708  3.57257  0.11883  3.47567     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     22   2.93708  3.57257  0.11883  3.47567     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     23   2.93708  3.57257  0.11883  3.47567     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     24   3.07355  2.58556  3.12228  0.18112     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     25   0.14388  3.36532  2.79221  3.26557     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     26   3.41588  0.13228  3.46607  2.81644     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     27   0.14388  3.36532  2.79221  3.26557     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     28   3.41588  0.13228  3.46607  2.81644     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     29   3.41588  0.13228  3.46607  2.81644     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     30   3.41588  0.13228  3.46607  2.81644     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     31   2.93708  3.57257  0.11883  3.47567     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     32   3.07355  2.58556  3.12228  0.18112     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     33   3.07355  2.58556  3.12228  0.18112     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     34   3.07355  2.58556  3.12228  0.18112     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     35   2.93708  3.57257  0.11883  3.47567     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     36   0.14388  3.36532  2.79221  3.26557     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     37   2.93708  3.57257  0.11883  3.47567     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     38   3.07355  2.58556  3.12228  0.18112     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     39   2.93708  3.57257  0.11883  3.47567     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     40   3.07355  2.58556  3.12228  0.18112     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     41   3.41588  0.13228  3.46607  2.81644     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     42   0.14388  3.36532  2.79221  3.26557     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     43   3.07355  2.58556  3.12228  0.18112     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     44   3.07355  2.58556  3.12228  0.18112     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     45   2.93708  3.57257  0.11883  3.47567     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01878  3.98460        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirtysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:56:23 2012
+NSEQ  119
+EFFN  4.085541
+CKSUM 3029002216
+STATS LOCAL MSV       -7.3915  0.71932
+STATS LOCAL VITERBI   -7.6471  0.71932
+STATS LOCAL FORWARD   -4.1604  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.83523  1.25603  1.14185  1.44217
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  0.00000        *
+      1   3.09292  3.80205  0.09617  3.72990      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+      2   3.55029  0.12952  3.59406  2.72904      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+      3   2.49301  3.52644  0.15596  3.43158      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+      4   3.67962  0.10429  3.71803  3.00543      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+      5   3.30686  0.18723  3.36009  2.30878      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+      6   3.44031  0.15360  3.48856  2.52843      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+      7   3.18673  0.15924  3.40752  2.62031      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+      8   3.26596  2.60758  3.30740  0.16074      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+      9   3.26029  2.59248  3.30200  0.16254      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     10   3.09292  3.80205  0.09617  3.72990     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     11   3.09292  3.80205  0.09617  3.72990     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     12   2.32752  0.83355  2.48769  0.95488     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     13   0.16140  3.33666  2.83269  2.90707     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     14   3.23583  2.52879  3.27866  0.17051     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     15   3.31220  2.73702  3.35162  0.14645     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     16   3.67962  0.10429  3.71803  3.00543     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     17   3.44788  0.15185  3.49583  2.54155     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     18   3.09292  3.80205  0.09617  3.72990     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     19   0.11639  3.59620  2.94097  3.51897     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     20   2.51948  3.21356  0.18381  3.05351     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     21   2.75101  3.66165  0.12497  3.57827     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     22   2.65810  3.61586  0.13505  3.52851     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     23   3.09292  3.80205  0.09617  3.72990     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     24   3.18752  0.22277  3.24472  2.12486     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     25   0.14303  3.49130  2.66434  3.40627     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     26   3.25424  0.20216  3.30927  2.22668     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     27   0.24323  3.17819  2.05778  3.06800     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     28   3.67962  0.10429  3.71803  3.00543     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     29   3.54424  0.13078  3.58827  2.71736     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     30   3.16047  0.23173  3.21851  2.08409     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     31   3.09292  3.80205  0.09617  3.72990     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     32   3.31220  2.73702  3.35162  0.14645     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     33   3.26199  2.59698  3.30362  0.16200     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     34   3.31220  2.73702  3.35162  0.14645     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     35   3.03589  3.46172  0.11323  3.58826     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     36   0.11639  3.59620  2.94097  3.51897     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     37   3.09292  3.80205  0.09617  3.72990     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     38   3.20647  2.45543  3.25067  0.18041     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     39   3.09292  3.80205  0.09617  3.72990     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     40   3.31220  2.73702  3.35162  0.14645     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     41   3.58926  0.12162  3.63139  2.80650     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     42   2.34091  3.06612  0.24460  2.60182     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     43   3.21073  2.46588  3.25473  0.17895     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     44   3.09292  3.80205  0.09617  3.72990     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03234  4.14084  4.14084  1.46634  0.26236  1.09861  0.40547
+     45   0.14122  3.49810  2.68057  3.41365     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01630  4.12480        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirtythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:54:55 2012
+NSEQ  351
+EFFN  6.488594
+CKSUM 2394442090
+STATS LOCAL MSV       -6.8045  0.71932
+STATS LOCAL VITERBI   -7.5336  0.71932
+STATS LOCAL FORWARD   -4.3163  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.79997  1.44305  1.24296  1.17131
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  0.00000        *
+      1   3.37204  4.20245  0.06688  4.17254      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+      2   4.14739  0.06919  4.16415  3.33818      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+      3   1.73548  3.47373  0.27685  3.36634      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+      4   4.14739  0.06919  4.16415  3.33818      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+      5   2.93933  0.64077  3.00533  0.99238      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+      6   3.91225  0.11989  3.94372  2.60897      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+      7   2.73332  0.88786  2.66507  0.78995      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+      8   2.61985  2.09287  2.89130  0.28989      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+      9   3.60945  2.62100  3.44260  0.14131      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     10   3.19289  4.17196  0.07518  4.13819     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     11   3.37204  4.20245  0.06688  4.17254     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     12   3.69497  2.62703  3.72270  0.12932     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     13   0.10013  3.71230  3.09648  3.66317     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     14   3.42667  2.69150  3.66036  0.13467     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     15   3.76325  2.89684  3.78650  0.10656     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     16   4.10951  0.07732  4.12873  3.17276     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     17   4.01844  0.09675  4.04355  2.86992     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     18   2.35232  3.03449  0.31028  2.09146     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     19   0.55780  2.25487  1.88832  1.76421     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     20   0.83926  2.59787  0.88257  2.52795     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     21   2.74403  4.05740  0.10511  4.00792     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     22   1.10415  3.06246  0.56484  2.93212     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     23   3.37204  4.20245  0.06688  4.17254     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     24   3.26905  0.32275  3.32761  1.59986     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     25   0.08758  4.00007  3.06866  3.96056     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     26   3.61992  2.38400  3.65237  0.15653     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     27   2.96006  4.12059  0.08879  4.07972     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     28   4.08590  0.08236  4.10667  3.08378     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     29   3.94741  0.11213  3.97683  2.68794     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     30   3.46769  1.99795  3.50882  0.21907     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     31   3.19569  4.17249  0.07504  4.13879     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     32   3.69591  3.02638  3.41891  0.11212     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     33   3.79096  3.05588  3.78857  0.09682     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     34   3.79756  3.05786  3.81856  0.09582     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     35   3.37204  4.20245  0.06688  4.17254     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     36   0.07875  4.02918  3.23135  3.99323     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     37   3.17301  4.16814  0.07621  4.13385     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     38   3.47880  2.84248  3.70702  0.12067     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     39   2.35390  3.89109  0.14771  3.82121     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     40   3.79756  3.05786  3.81856  0.09582     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     41   4.10520  0.07824  4.12471  3.15582     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     42   0.09201  3.98554  2.99665  3.94412     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     43   3.52520  2.96835  2.92856  0.14423     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     44   2.45303  2.43349  1.48021  0.51308     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02329  4.46460  4.46460  1.46634  0.26236  1.09861  0.40547
+     45   0.29737  3.04490  1.94615  2.70599     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01171  4.45302        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_thirtytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:54:42 2012
+NSEQ  42
+EFFN  4.211792
+CKSUM 2180024549
+STATS LOCAL MSV       -6.8332  0.71933
+STATS LOCAL VITERBI   -7.6892  0.71933
+STATS LOCAL FORWARD   -4.3003  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.86084  1.32950  1.13517  1.35294
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  0.00000        *
+      1   3.11302  3.83189  0.09359  3.76305      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+      2   3.71437  0.10113  3.75114  3.02993      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+      3   1.59518  2.96179  0.37620  2.83131      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+      4   3.71437  0.10113  3.75114  3.02993      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+      5   3.71437  0.10113  3.75114  3.02993      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+      6   3.09235  0.26311  3.15254  1.94349      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+      7   3.04877  0.28077  3.11017  1.87869      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+      8   3.17063  2.30661  3.21694  0.20047      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+      9   3.20228  2.38008  3.24710  0.18886      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     10   3.11302  3.83189  0.09359  3.76305     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     11   3.11302  3.83189  0.09359  3.76305     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     12   2.94847  1.85129  3.00437  0.29979     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     13   0.11318  3.62708  2.96083  3.55294     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     14   3.34515  2.75800  3.38327  0.14227     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     15   3.34515  2.75800  3.38327  0.14227     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     16   3.71437  0.10113  3.75114  3.02993     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     17   3.71437  0.10113  3.75114  3.02993     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     18   3.11302  3.83189  0.09359  3.76305     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     19   0.14112  3.51714  2.66380  3.43433     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     20   1.92172  3.18248  0.26731  3.06341     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     21   3.11302  3.83189  0.09359  3.76305     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     22   3.11302  3.83189  0.09359  3.76305     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     23   3.11302  3.83189  0.09359  3.76305     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     24   2.77359  0.44087  2.84133  1.44504     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     25   0.11318  3.62708  2.96083  3.55294     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     26   3.71437  0.10113  3.75114  3.02993     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     27   1.03660  2.68825  0.69502  2.54748     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     28   3.71437  0.10113  3.75114  3.02993     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     29   3.71437  0.10113  3.75114  3.02993     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     30   3.09435  2.14011  3.14413  0.23074     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     31   3.11302  3.83189  0.09359  3.76305     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     32   3.34515  2.75800  3.38327  0.14227     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     33   3.20342  2.38279  3.24819  0.18845     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     34   3.20576  2.38835  3.25042  0.18762     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     35   3.11302  3.83189  0.09359  3.76305     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     36   0.11318  3.62708  2.96083  3.55294     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     37   3.11302  3.83189  0.09359  3.76305     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     38   3.34515  2.75800  3.38327  0.14227     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     39   1.87019  3.14674  0.28185  3.02563     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     40   3.34515  2.75800  3.38327  0.14227     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     41   3.71437  0.10113  3.75114  3.02993     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     42   2.55286  3.58660  0.14601  3.49664     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     43   3.34515  2.75800  3.38327  0.14227     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     44   3.11302  3.83189  0.09359  3.76305     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03169  4.16072  4.16072  1.46634  0.26236  1.09861  0.40547
+     45   0.11318  3.62708  2.96083  3.55294     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01597  4.14500        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_threea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:45:15 2012
+NSEQ  12
+EFFN  4.303711
+CKSUM 1979458222
+STATS LOCAL MSV       -6.9027  0.71932
+STATS LOCAL VITERBI   -7.7747  0.71932
+STATS LOCAL FORWARD   -4.0266  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.03263  1.23760  1.27847  1.20242
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  0.00000        *
+      1   3.12709  3.85275  0.09184  3.78625      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+      2   3.73872  0.09898  3.77434  3.04707      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+      3   3.12709  3.85275  0.09184  3.78625      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+      4   3.73872  0.09898  3.77434  3.04707      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+      5   3.36270  0.18073  3.41420  2.32486      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+      6   2.59130  1.03922  2.66033  0.69031      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+      7   3.09449  0.26748  3.15473  1.91903      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+      8   3.13148  2.17628  3.17994  0.22152      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+      9   3.36848  2.77289  3.40568  0.13939      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     10   3.12709  3.85275  0.09184  3.78625     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     11   3.12709  3.85275  0.09184  3.78625     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     12   3.36848  2.77289  3.40568  0.13939     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     13   0.11098  3.64881  2.97483  3.57684     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     14   3.36848  2.77289  3.40568  0.13939     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     15   3.36848  2.77289  3.40568  0.13939     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     16   3.73872  0.09898  3.77434  3.04707     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     17   3.73872  0.09898  3.77434  3.04707     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     18   3.36848  2.77289  3.40568  0.13939     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     19   2.23183  0.36008  2.73065  2.04120     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     20   2.06147  3.29854  0.23007  3.18647     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     21   0.71168  2.68528  1.01461  2.54550     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     22   2.44260  3.54353  0.15970  3.44975     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     23   3.12709  3.85275  0.09184  3.78625     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     24   3.73872  0.09898  3.77434  3.04707     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     25   0.11098  3.64881  2.97483  3.57684     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     26   3.36848  2.77289  3.40568  0.13939     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     27   3.12709  3.85275  0.09184  3.78625     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     28   3.73872  0.09898  3.77434  3.04707     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     29   3.73872  0.09898  3.77434  3.04707     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     30   3.36848  2.77289  3.40568  0.13939     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     31   0.56645  2.74603  1.22178  2.60943     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     32   3.36848  2.77289  3.40568  0.13939     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     33   3.36848  2.77289  3.40568  0.13939     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     34   3.73872  0.09898  3.77434  3.04707     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     35   3.12709  3.85275  0.09184  3.78625     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     36   0.11098  3.64881  2.97483  3.57684     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     37   3.12709  3.85275  0.09184  3.78625     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     38   3.73872  0.09898  3.77434  3.04707     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     39   3.12709  3.85275  0.09184  3.78625     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     40   3.36848  2.77289  3.40568  0.13939     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     41   3.73872  0.09898  3.77434  3.04707     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     42   3.12709  3.85275  0.09184  3.78625     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     43   3.36848  2.77289  3.40568  0.13939     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     44   3.36848  2.77289  3.40568  0.13939     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03123  4.17496  4.17496  1.46634  0.26236  1.09861  0.40547
+     45   1.69489  2.23452  1.95692  0.56555     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01574  4.15946        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_threeb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:45:25 2012
+NSEQ  6
+EFFN  3.249023
+CKSUM 781331319
+STATS LOCAL MSV       -8.1808  0.71931
+STATS LOCAL VITERBI   -7.7733  0.71931
+STATS LOCAL FORWARD   -4.1064  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93556  1.19421  1.20031  1.37986
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  0.00000        *
+      1   2.93080  3.56347  0.11985  3.46564      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      2   3.40558  0.13354  3.45619  2.80891      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      3   2.93080  3.56347  0.11985  3.46564      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      4   3.40558  0.13354  3.45619  2.80891      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      5   3.40558  0.13354  3.45619  2.80891      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      6   3.06457  2.57984  3.11364  0.18260      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      7   2.70234  1.80840  2.76426  0.34812      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      8   3.40558  0.13354  3.45619  2.80891      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      9   3.40558  0.13354  3.45619  2.80891      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     10   0.14509  3.35639  2.78639  3.25580     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     11   2.93080  3.56347  0.11985  3.46564     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     12   3.06457  2.57984  3.11364  0.18260     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     13   0.14509  3.35639  2.78639  3.25580     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     14   3.06457  2.57984  3.11364  0.18260     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     15   3.40558  0.13354  3.45619  2.80891     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     16   3.40558  0.13354  3.45619  2.80891     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     17   3.06457  2.57984  3.11364  0.18260     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     18   2.93080  3.56347  0.11985  3.46564     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     19   2.93080  3.56347  0.11985  3.46564     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     20   2.93080  3.56347  0.11985  3.46564     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     21   0.14509  3.35639  2.78639  3.25580     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     22   2.93080  3.56347  0.11985  3.46564     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     23   2.93080  3.56347  0.11985  3.46564     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     24   3.40558  0.13354  3.45619  2.80891     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     25   0.14509  3.35639  2.78639  3.25580     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     26   3.06457  2.57984  3.11364  0.18260     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     27   2.93080  3.56347  0.11985  3.46564     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     28   3.40558  0.13354  3.45619  2.80891     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     29   3.40558  0.13354  3.45619  2.80891     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     30   3.06457  2.57984  3.11364  0.18260     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     31   2.93080  3.56347  0.11985  3.46564     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     32   3.06457  2.57984  3.11364  0.18260     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     33   3.40558  0.13354  3.45619  2.80891     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     34   3.40558  0.13354  3.45619  2.80891     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     35   2.93080  3.56347  0.11985  3.46564     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     36   0.14509  3.35639  2.78639  3.25580     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     37   2.93080  3.56347  0.11985  3.46564     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     38   3.40558  0.13354  3.45619  2.80891     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     39   2.93080  3.56347  0.11985  3.46564     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     40   3.06457  2.57984  3.11364  0.18260     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     41   3.40558  0.13354  3.45619  2.80891     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     42   2.93080  3.56347  0.11985  3.46564     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     43   3.06457  2.57984  3.11364  0.18260     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     44   3.06457  2.57984  3.11364  0.18260     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     45   3.06457  2.57984  3.11364  0.18260     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01887  3.97950        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_twelvea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:47:19 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3982407886
+STATS LOCAL MSV       -7.3772  0.72828
+STATS LOCAL VITERBI   -8.2735  0.72828
+STATS LOCAL FORWARD   -3.3582  0.72828
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.59176  1.33142  1.37706  1.27293
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_twelveb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:47:26 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 53452266
+STATS LOCAL MSV       -7.7256  0.72714
+STATS LOCAL VITERBI   -8.2052  0.72714
+STATS LOCAL FORWARD   -3.3289  0.72714
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.83846  1.06449  1.17379  1.67751
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_twelvec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:47:35 2012
+NSEQ  107
+EFFN  7.245880
+CKSUM 3390818574
+STATS LOCAL MSV       -6.8747  0.71932
+STATS LOCAL VITERBI   -7.5998  0.71932
+STATS LOCAL FORWARD   -4.1565  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.95559  1.14396  1.17846  1.46011
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  0.00000        *
+      1   3.43379  4.28329  0.06207  4.26014      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+      2   4.24002  0.06372  4.25312  3.40796      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+      3   2.76827  4.15885  0.09946  4.11768      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+      4   4.24002  0.06372  4.25312  3.40796      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+      5   3.73989  0.09154  4.09105  3.05764      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+      6   4.02048  0.11511  4.04819  2.61272      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+      7   2.14388  2.21253  0.46084  1.94754      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+      8   2.74776  0.42115  1.80721  2.15827      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+      9   2.83403  0.47396  2.56745  1.41898      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     10   0.46527  3.23697  1.24322  3.11680     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     11   3.43379  4.28329  0.06207  4.26014     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     12   2.82335  1.34493  3.07699  0.45580     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     13   0.07241  4.12095  3.29908  4.09225     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     14   2.31142  1.56599  2.88532  0.45230     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03243  4.54816  3.84795  1.46634  0.26236  1.09861  0.40547
+     15   3.64192  2.16486  3.67625  0.18186     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02164  4.53737  4.53737  1.46634  0.26236  0.68962  0.69669
+     16   4.24002  0.06372  4.25312  3.40796     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     17   3.17280  1.23422  3.23037  0.46599     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     18   2.66002  3.49180  0.12919  3.87295     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     19   2.60618  1.94896  0.30891  3.00543     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     20   2.41121  0.46015  2.45151  1.64536     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     21   2.71157  4.14225  0.10415  4.09872     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     22   3.12597  4.23888  0.07599  4.20948     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     23   3.43379  4.28329  0.06207  4.26014     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     24   4.06542  0.10468  4.09034  2.72576     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     25   0.07241  4.12095  3.29908  4.09225     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     26   3.61309  2.05253  3.64958  0.20014     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     27   3.19245  4.25002  0.07257  4.22226     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     28   4.24002  0.06372  4.25312  3.40796     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     29   4.15417  0.08412  4.17323  3.00421     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     30   3.42038  3.10173  3.81999  0.10492     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     31   3.43379  4.28329  0.06207  4.26014     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     32   3.80551  2.64778  3.82992  0.12191     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     33   3.02632  0.88571  3.08996  0.70607     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     34   3.99135  0.12193  4.02081  2.54623     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     35   3.20964  4.25274  0.07173  4.22538     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     36   0.07241  4.12095  3.29908  4.09225     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     37   3.43379  4.28329  0.06207  4.26014     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     38   3.65597  0.07962  4.14055  3.35865     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     39   3.40494  4.20772  0.07393  3.76478     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     40   3.00745  2.52512  3.55149  0.17215     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     41   4.24002  0.06372  4.25312  3.40796     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     42   0.13070  3.95076  2.48890  3.89821     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     43   3.07427  2.66328  3.16073  0.17238     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     44   2.88853  2.28319  2.88873  0.23986     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02140  4.54816  4.54816  1.46634  0.26236  1.09861  0.40547
+     45   1.49457  2.24592  2.28264  0.56597     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01076  4.53752        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_twentya_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:49:36 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2901513352
+STATS LOCAL MSV       -7.6665  0.72813
+STATS LOCAL VITERBI   -8.3101  0.72813
+STATS LOCAL FORWARD   -3.6357  0.72813
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.58685  1.45101  1.26409  1.27798
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_twentyb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:49:45 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3756287080
+STATS LOCAL MSV       -7.8289  0.72081
+STATS LOCAL VITERBI   -7.9009  0.72081
+STATS LOCAL FORWARD   -4.0995  0.72081
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.75523  1.44620  1.19391  1.24259
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
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+     42   0.70020  2.19823  2.14894  1.28770     42 - -
+          1.38629  1.38629  1.38629  1.38629
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+     44   2.86982  3.47591  0.13017  3.36931     44 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_twentyc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:49:51 2012
+NSEQ  106
+EFFN  7.715149
+CKSUM 2322158090
+STATS LOCAL MSV       -6.9114  0.71932
+STATS LOCAL VITERBI   -7.4888  0.71932
+STATS LOCAL FORWARD   -4.3259  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.70316  1.49955  1.24980  1.17733
+          1.38629  1.38629  1.38629  1.38629
+          0.02038  4.59665  4.59665  1.46634  0.26236  0.00000        *
+      1   3.46876  4.32749  0.05956  4.30761      1 - -
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+      2   4.22699  0.07714  4.24282  3.09504      2 - -
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+      3   1.43141  3.43577  0.36712  3.32137      3 - -
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+      4   4.29003  0.06092  4.30133  3.44675      4 - -
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+          0.02038  4.59665  4.59665  1.46634  0.26236  1.09861  0.40547
+     43   3.91957  2.90425  3.93851  0.09884     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02038  4.59665  4.59665  1.46634  0.26236  1.09861  0.40547
+     44   2.49153  2.82355  0.36557  1.80778     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02038  4.59665  4.59665  1.46634  0.26236  1.09861  0.40547
+     45   0.16824  3.64720  2.73517  2.75036     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01024  4.58651        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_twentyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:51:19 2012
+NSEQ  4
+EFFN  3.511719
+CKSUM 2180562685
+STATS LOCAL MSV       -7.5761  0.71932
+STATS LOCAL VITERBI   -7.7560  0.71932
+STATS LOCAL FORWARD   -4.2810  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.46842  1.47278  1.30641  1.31069
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  0.00000        *
+      1   2.98801  3.64693  0.11089  3.55782      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+      2   3.50057  0.12244  3.54711  2.87785      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+      3   2.98801  3.64693  0.11089  3.55782      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+      4   3.50057  0.12244  3.54711  2.87785      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+      5   3.50057  0.12244  3.54711  2.87785      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+      6   2.43894  0.95160  2.51060  0.80878      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+      7   0.13439  3.43892  2.83989  3.34620      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+      8   0.13439  3.43892  2.83989  3.34620      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+      9   3.14821  2.63300  3.19407  0.16936      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     10   2.98801  3.64693  0.11089  3.55782     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     11   2.98801  3.64693  0.11089  3.55782     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     12   3.14821  2.63300  3.19407  0.16936     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     13   0.13439  3.43892  2.83989  3.34620     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     14   3.14821  2.63300  3.19407  0.16936     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     15   3.14821  2.63300  3.19407  0.16936     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     16   3.50057  0.12244  3.54711  2.87785     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     17   3.50057  0.12244  3.54711  2.87785     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     18   0.13439  3.43892  2.83989  3.34620     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     19   2.43894  0.95160  2.51060  0.80878     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     20   3.14821  2.63300  3.19407  0.16936     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     21   2.98801  3.64693  0.11089  3.55782     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     22   2.98801  3.64693  0.11089  3.55782     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     23   2.98801  3.64693  0.11089  3.55782     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     24   3.50057  0.12244  3.54711  2.87785     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     25   0.13439  3.43892  2.83989  3.34620     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     26   3.14821  2.63300  3.19407  0.16936     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     27   0.13439  3.43892  2.83989  3.34620     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     28   3.50057  0.12244  3.54711  2.87785     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     29   3.50057  0.12244  3.54711  2.87785     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     30   3.14821  2.63300  3.19407  0.16936     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     31   2.98801  3.64693  0.11089  3.55782     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     32   3.14821  2.63300  3.19407  0.16936     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     33   3.14821  2.63300  3.19407  0.16936     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     34   3.14821  2.63300  3.19407  0.16936     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     35   2.98801  3.64693  0.11089  3.55782     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     36   0.13439  3.43892  2.83989  3.34620     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     37   2.98801  3.64693  0.11089  3.55782     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     38   3.14821  2.63300  3.19407  0.16936     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     39   2.98801  3.64693  0.11089  3.55782     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     40   3.14821  2.63300  3.19407  0.16936     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     41   3.50057  0.12244  3.54711  2.87785     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     42   0.13439  3.43892  2.83989  3.34620     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     43   2.98801  3.64693  0.11089  3.55782     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     44   0.13439  3.43892  2.83989  3.34620     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03564  4.04510  4.04510  1.46634  0.26236  1.09861  0.40547
+     45   0.13439  3.43892  2.83989  3.34620     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01798  4.02744        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_twentyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:50:50 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3616253141
+STATS LOCAL MSV       -7.9508  0.72090
+STATS LOCAL VITERBI   -7.7767  0.72090
+STATS LOCAL FORWARD   -4.1429  0.72090
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.46379  1.55696  1.31134  1.24339
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   0.15719  3.27118  2.73043  3.16274      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   3.30705  0.14631  3.36166  2.73626     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.43223  0.62271  2.50508  1.22417     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_twentyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:50:39 2012
+NSEQ  5
+EFFN  3.276367
+CKSUM 3556920972
+STATS LOCAL MSV       -7.8622  0.71933
+STATS LOCAL VITERBI   -7.8111  0.71933
+STATS LOCAL FORWARD   -4.2004  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55229  1.45230  1.31440  1.25326
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  0.00000        *
+      1   2.93708  3.57257  0.11883  3.47567      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      2   3.41588  0.13228  3.46607  2.81644      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      3   2.93708  3.57257  0.11883  3.47567      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      4   3.41588  0.13228  3.46607  2.81644      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      5   3.07355  2.58556  3.12228  0.18112      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      6   3.07355  2.58556  3.12228  0.18112      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      7   3.07355  2.58556  3.12228  0.18112      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      8   3.41588  0.13228  3.46607  2.81644      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      9   3.07355  2.58556  3.12228  0.18112      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     10   2.93708  3.57257  0.11883  3.47567     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     11   2.93708  3.57257  0.11883  3.47567     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     12   3.07355  2.58556  3.12228  0.18112     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     13   0.14388  3.36532  2.79221  3.26557     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     14   3.07355  2.58556  3.12228  0.18112     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     15   3.07355  2.58556  3.12228  0.18112     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     16   3.41588  0.13228  3.46607  2.81644     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     17   3.41588  0.13228  3.46607  2.81644     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     18   2.93708  3.57257  0.11883  3.47567     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     19   2.93708  3.57257  0.11883  3.47567     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     20   0.14388  3.36532  2.79221  3.26557     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     21   0.14388  3.36532  2.79221  3.26557     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     22   0.14388  3.36532  2.79221  3.26557     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     23   2.93708  3.57257  0.11883  3.47567     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     24   3.41588  0.13228  3.46607  2.81644     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     25   0.14388  3.36532  2.79221  3.26557     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     26   3.07355  2.58556  3.12228  0.18112     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     27   2.93708  3.57257  0.11883  3.47567     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     28   3.41588  0.13228  3.46607  2.81644     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     29   3.41588  0.13228  3.46607  2.81644     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     30   3.07355  2.58556  3.12228  0.18112     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     31   2.93708  3.57257  0.11883  3.47567     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     32   3.07355  2.58556  3.12228  0.18112     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     33   3.07355  2.58556  3.12228  0.18112     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     34   3.07355  2.58556  3.12228  0.18112     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     35   2.93708  3.57257  0.11883  3.47567     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     36   0.14388  3.36532  2.79221  3.26557     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     37   2.93708  3.57257  0.11883  3.47567     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     38   0.14388  3.36532  2.79221  3.26557     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     39   0.14388  3.36532  2.79221  3.26557     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     40   3.07355  2.58556  3.12228  0.18112     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     41   3.41588  0.13228  3.46607  2.81644     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     42   2.93708  3.57257  0.11883  3.47567     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     43   0.14388  3.36532  2.79221  3.26557     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     44   3.07355  2.58556  3.12228  0.18112     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     45   3.41588  0.13228  3.46607  2.81644     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01878  3.98460        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_twentynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:51:36 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2190731302
+STATS LOCAL MSV       -7.8683  0.72073
+STATS LOCAL VITERBI   -7.9440  0.72073
+STATS LOCAL FORWARD   -4.1358  0.72073
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54088  1.50849  1.25120  1.27868
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.43088  1.34923  2.50068  0.56112     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   0.15719  3.27118  2.73043  3.16274     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.86982  3.47591  0.13017  3.36931     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_twentyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:50:06 2012
+NSEQ  68
+EFFN  5.341553
+CKSUM 4218474599
+STATS LOCAL MSV       -6.5408  0.71932
+STATS LOCAL VITERBI   -7.4328  0.71932
+STATS LOCAL FORWARD   -4.1545  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62069  1.55251  1.29618  1.14902
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  0.00000        *
+      1   3.26035  4.04757  0.07700  4.00244      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+      2   3.96701  0.08104  3.99180  3.20779      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+      3   1.52805  3.12519  0.37201  3.00039      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+      4   3.96701  0.08104  3.99180  3.20779      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+      5   3.40124  2.31825  3.44070  0.17891      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+      6   3.68743  0.13742  3.72728  2.53455      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+      7   3.29901  2.08124  3.34377  0.21940      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+      8   2.38069  0.68216  2.61986  1.11117      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+      9   3.47638  2.51932  3.51166  0.15231      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     10   3.26035  4.04757  0.07700  4.00244     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     11   3.26035  4.04757  0.07700  4.00244     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     12   3.39968  2.31436  3.43922  0.17949     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     13   0.09202  3.85699  3.11153  3.80553     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     14   3.59866  2.92234  3.62689  0.11403     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     15   3.59866  2.92234  3.62689  0.11403     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     16   3.96701  0.08104  3.99180  3.20779     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     17   3.96701  0.08104  3.99180  3.20779     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     18   2.94997  3.96296  0.09587  3.90836     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     19   1.32281  2.72059  0.54730  2.41610     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     20   0.20881  3.46473  2.09684  3.37196     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     21   2.76877  3.89809  0.11049  3.83584     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     22   0.14674  3.65907  2.48878  3.58575     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     23   3.26035  4.04757  0.07700  4.00244     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     24   2.87459  0.49645  2.94120  1.26560     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     25   0.09202  3.85699  3.11153  3.80553     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     26   3.59866  2.92234  3.62689  0.11403     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     27   3.26035  4.04757  0.07700  4.00244     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     28   3.96701  0.08104  3.99180  3.20779     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     29   2.92149  1.37844  2.98235  0.44083     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     30   3.59866  2.92234  3.62689  0.11403     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     31   3.26035  4.04757  0.07700  4.00244     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     32   3.59866  2.92234  3.62689  0.11403     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     33   3.59866  2.92234  3.62689  0.11403     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     34   3.59866  2.92234  3.62689  0.11403     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     35   2.64770  1.86285  0.34080  2.76854     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     36   0.09202  3.85699  3.11153  3.80553     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     37   3.26035  4.04757  0.07700  4.00244     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     38   3.59866  2.92234  3.62689  0.11403     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     39   0.13763  3.02354  3.00496  3.49315     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     40   3.59866  2.92234  3.62689  0.11403     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     41   3.68325  0.13835  3.72330  2.52688     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     42   0.27590  3.03860  2.28855  2.38821     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     43   2.68665  2.95626  0.31729  1.88545     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     44   2.48890  2.39411  1.91395  0.38824     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02688  4.32301  4.32301  1.46634  0.26236  1.09861  0.40547
+     45   0.09202  3.85699  3.11153  3.80553     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01353  4.30966        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_twentyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:51:07 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3213938601
+STATS LOCAL MSV       -7.6048  0.72810
+STATS LOCAL VITERBI   -8.1240  0.72810
+STATS LOCAL FORWARD   -3.6947  0.72810
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.52232  1.39334  1.31725  1.32547
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_twentysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:50:59 2012
+NSEQ  37
+EFFN  3.915894
+CKSUM 651011829
+STATS LOCAL MSV       -7.1790  0.71932
+STATS LOCAL VITERBI   -7.5990  0.71932
+STATS LOCAL FORWARD   -4.3085  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.79308  1.26228  1.22085  1.36428
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  0.00000        *
+      1   3.06437  3.75968  0.09996  3.68283      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+      2   3.63043  0.10895  3.67113  2.97063      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+      3   3.06437  3.75968  0.09996  3.68283      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+      4   3.63043  0.10895  3.67113  2.97063      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+      5   3.63043  0.10895  3.67113  2.97063      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+      6   2.86784  0.34787  2.93342  1.69404      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+      7   3.26622  2.70781  3.30746  0.15250      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+      8   0.29259  2.85457  2.32499  2.31963      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+      9   3.15746  2.42678  3.20340  0.18811      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     10   3.06437  3.75968  0.09996  3.68283     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     11   3.06437  3.75968  0.09996  3.68283     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     12   2.32385  2.52026  2.86722  0.26813     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     13   0.12108  3.55271  2.91304  3.47115     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     14   2.97944  2.59704  2.67505  0.21594     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     15   3.26622  2.70781  3.30746  0.15250     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     16   3.63043  0.10895  3.67113  2.97063     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     17   3.31201  0.17916  3.36488  2.37499     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     18   0.97278  2.62486  0.76362  2.48239     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     19   3.26622  2.70781  3.30746  0.15250     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     20   0.19654  3.19505  2.52840  2.85282     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     21   2.11817  3.25348  0.22591  3.13914     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     22   3.06437  3.75968  0.09996  3.68283     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     23   3.06437  3.75968  0.09996  3.68283     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     24   3.63043  0.10895  3.67113  2.97063     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     25   0.12108  3.55271  2.91304  3.47115     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     26   3.26622  2.70781  3.30746  0.15250     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     27   3.06437  3.75968  0.09996  3.68283     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     28   3.63043  0.10895  3.67113  2.97063     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     29   3.63043  0.10895  3.67113  2.97063     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     30   3.26622  2.70781  3.30746  0.15250     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     31   3.06437  3.75968  0.09996  3.68283     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     32   3.26622  2.70781  3.30746  0.15250     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     33   3.63043  0.10895  3.67113  2.97063     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     34   3.26622  2.70781  3.30746  0.15250     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     35   3.06437  3.75968  0.09996  3.68283     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     36   0.12108  3.55271  2.91304  3.47115     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     37   3.06437  3.75968  0.09996  3.68283     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     38   3.49675  0.13558  3.54266  2.69470     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     39   3.06437  3.75968  0.09996  3.68283     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     40   3.26622  2.70781  3.30746  0.15250     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     41   3.49245  0.13650  3.53853  2.68663     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     42   0.12108  3.55271  2.91304  3.47115     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     43   2.80123  3.65034  0.12217  3.56560     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     44   3.63043  0.10895  3.67113  2.97063     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03325  4.11348  4.11348  1.46634  0.26236  1.09861  0.40547
+     45   1.87124  2.39122  2.61199  0.38396     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01676  4.09699        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_twentythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:50:25 2012
+NSEQ  6
+EFFN  3.436523
+CKSUM 3090229925
+STATS LOCAL MSV       -7.5604  0.71933
+STATS LOCAL VITERBI   -7.6790  0.71933
+STATS LOCAL FORWARD   -4.3074  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.85410  1.38636  1.25228  1.17905
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  0.00000        *
+      1   2.97231  3.62392  0.11328  3.53237      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      2   3.47427  0.12540  3.52197  2.85887      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      3   2.97231  3.62392  0.11328  3.53237      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      4   3.47427  0.12540  3.52197  2.85887      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      5   3.47427  0.12540  3.52197  2.85887      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      6   3.47427  0.12540  3.52197  2.85887      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      7   3.12486  2.61817  3.17162  0.17294      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      8   3.12486  2.61817  3.17162  0.17294      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      9   3.12486  2.61817  3.17162  0.17294      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     10   2.97231  3.62392  0.11328  3.53237     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     11   2.97231  3.62392  0.11328  3.53237     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     12   3.12486  2.61817  3.17162  0.17294     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     13   0.13726  3.41603  2.82510  3.32110     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     14   3.12486  2.61817  3.17162  0.17294     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     15   3.12486  2.61817  3.17162  0.17294     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     16   3.47427  0.12540  3.52197  2.85887     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     17   3.47427  0.12540  3.52197  2.85887     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     18   3.12486  2.61817  3.17162  0.17294     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     19   3.12486  2.61817  3.17162  0.17294     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     20   0.39098  2.58450  2.40283  1.84700     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     21   2.97231  3.62392  0.11328  3.53237     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     22   2.97231  3.62392  0.11328  3.53237     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     23   2.97231  3.62392  0.11328  3.53237     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     24   3.47427  0.12540  3.52197  2.85887     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     25   0.13726  3.41603  2.82510  3.32110     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     26   3.12486  2.61817  3.17162  0.17294     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     27   2.97231  3.62392  0.11328  3.53237     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     28   3.47427  0.12540  3.52197  2.85887     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     29   3.47427  0.12540  3.52197  2.85887     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     30   3.12486  2.61817  3.17162  0.17294     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     31   2.97231  3.62392  0.11328  3.53237     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     32   3.12486  2.61817  3.17162  0.17294     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     33   3.12486  2.61817  3.17162  0.17294     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     34   3.12486  2.61817  3.17162  0.17294     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     35   2.97231  3.62392  0.11328  3.53237     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     36   0.13726  3.41603  2.82510  3.32110     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     37   2.97231  3.62392  0.11328  3.53237     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     38   3.12486  2.61817  3.17162  0.17294     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     39   2.97231  3.62392  0.11328  3.53237     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     40   3.12486  2.61817  3.17162  0.17294     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     41   3.47427  0.12540  3.52197  2.85887     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     42   0.13726  3.41603  2.82510  3.32110     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     43   2.86916  0.31048  2.93446  1.85149     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     44   2.97231  3.62392  0.11328  3.53237     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     45   0.13726  3.41603  2.82510  3.32110     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01823  4.01395        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_twentytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:50:15 2012
+NSEQ  11
+EFFN  3.681885
+CKSUM 2596440244
+STATS LOCAL MSV       -7.5312  0.71931
+STATS LOCAL VITERBI   -7.6564  0.71931
+STATS LOCAL FORWARD   -4.1623  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81337  1.37351  1.14455  1.32684
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  0.00000        *
+      1   3.02172  3.69656  0.10592  3.61280      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+      2   3.55753  0.11630  3.60155  2.91873      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+      3   3.02172  3.69656  0.10592  3.61280      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+      4   3.55753  0.11630  3.60155  2.91873      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+      5   3.19941  2.66545  3.24327  0.16180      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+      6   3.55753  0.11630  3.60155  2.91873      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+      7   2.63603  0.49551  2.70597  1.37718      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+      8   0.21804  3.18229  2.22426  3.07335      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+      9   3.19941  2.66545  3.24327  0.16180      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     10   3.02172  3.69656  0.10592  3.61280     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     11   3.02172  3.69656  0.10592  3.61280     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     12   2.96563  2.12315  3.01906  0.24850     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     13   0.12838  3.48867  2.87192  3.40079     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     14   3.19941  2.66545  3.24327  0.16180     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     15   3.19941  2.66545  3.24327  0.16180     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     16   3.55753  0.11630  3.60155  2.91873     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     17   3.55753  0.11630  3.60155  2.91873     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     18   3.02172  3.69656  0.10592  3.61280     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     19   2.93570  2.06236  2.99033  0.26204     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     20   1.52298  2.81457  0.42568  2.67830     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     21   3.02172  3.69656  0.10592  3.61280     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     22   0.12838  3.48867  2.87192  3.40079     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     23   3.02172  3.69656  0.10592  3.61280     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     24   3.55753  0.11630  3.60155  2.91873     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     25   0.12838  3.48867  2.87192  3.40079     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     26   3.19941  2.66545  3.24327  0.16180     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     27   3.02172  3.69656  0.10592  3.61280     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     28   3.55753  0.11630  3.60155  2.91873     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     29   3.55753  0.11630  3.60155  2.91873     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     30   3.19941  2.66545  3.24327  0.16180     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     31   3.02172  3.69656  0.10592  3.61280     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     32   3.19941  2.66545  3.24327  0.16180     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     33   3.19941  2.66545  3.24327  0.16180     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     34   3.19941  2.66545  3.24327  0.16180     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     35   3.02172  3.69656  0.10592  3.61280     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     36   0.12838  3.48867  2.87192  3.40079     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     37   3.02172  3.69656  0.10592  3.61280     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     38   3.19941  2.66545  3.24327  0.16180     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     39   3.02172  3.69656  0.10592  3.61280     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     40   3.55753  0.11630  3.60155  2.91873     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     41   3.55753  0.11630  3.60155  2.91873     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     42   3.02172  3.69656  0.10592  3.61280     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     43   2.48645  1.07778  2.55681  0.69537     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     44   3.02172  3.69656  0.10592  3.61280     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07446  4.07446  1.46634  0.26236  1.09861  0.40547
+     45   0.12838  3.48867  2.87192  3.40079     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01745  4.05731        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 12:45:04 2012
+NSEQ  29
+EFFN  4.088745
+CKSUM 2970548822
+STATS LOCAL MSV       -7.1292  0.71933
+STATS LOCAL VITERBI   -7.6020  0.71933
+STATS LOCAL FORWARD   -4.3912  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81517  1.41265  1.28986  1.14450
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  0.00000        *
+      1   3.09344  3.80283  0.09610  3.73076      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+      2   3.68053  0.10420  3.71889  3.00607      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+      3   3.09344  3.80283  0.09610  3.73076      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+      4   3.68053  0.10420  3.71889  3.00607      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+      5   3.68053  0.10420  3.71889  3.00607      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+      6   3.47837  0.14505  3.52510  2.59412      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+      7   0.17395  3.38247  2.42616  3.28821      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+      8   3.31305  2.73756  3.35243  0.14634      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+      9   1.85277  1.67003  2.38454  0.57479      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     10   3.09344  3.80283  0.09610  3.73076     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     11   3.09344  3.80283  0.09610  3.73076     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     12   3.31305  2.73756  3.35243  0.14634     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     13   0.11631  3.59700  2.94148  3.51985     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     14   3.31305  2.73756  3.35243  0.14634     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     15   3.31305  2.73756  3.35243  0.14634     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     16   3.68053  0.10420  3.71889  3.00607     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     17   3.68053  0.10420  3.71889  3.00607     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     18   1.34104  2.09702  1.46128  0.95799     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     19   2.10650  2.48563  2.77583  0.31093     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     20   3.11794  2.24897  3.16622  0.21309     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     21   2.70121  3.63818  0.13019  3.55276     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     22   3.09344  3.80283  0.09610  3.73076     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     23   3.09344  3.80283  0.09610  3.73076     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     24   3.68053  0.10420  3.71889  3.00607     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     25   0.11631  3.59700  2.94148  3.51985     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     26   3.02637  2.05656  3.07864  0.25155     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     27   3.09344  3.80283  0.09610  3.73076     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     28   3.17296  2.37360  3.21873  0.19241     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     29   3.68053  0.10420  3.71889  3.00607     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     30   3.31305  2.73756  3.35243  0.14634     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     31   3.09344  3.80283  0.09610  3.73076     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     32   3.31305  2.73756  3.35243  0.14634     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     33   3.31305  2.73756  3.35243  0.14634     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     34   3.17296  2.37360  3.21873  0.19241     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     35   3.09344  3.80283  0.09610  3.73076     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     36   0.11631  3.59700  2.94148  3.51985     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     37   3.09344  3.80283  0.09610  3.73076     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     38   3.68053  0.10420  3.71889  3.00607     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     39   3.09344  3.80283  0.09610  3.73076     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     40   3.31305  2.73756  3.35243  0.14634     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     41   3.68053  0.10420  3.71889  3.00607     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     42   0.11631  3.59700  2.94148  3.51985     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     43   3.31305  2.73756  3.35243  0.14634     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     44   2.88231  2.56606  2.43104  0.24947     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     45   0.31033  2.81806  2.56990  2.03614     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01629  4.12532        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Ca_58S_start_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 14:00:44 2012
+NSEQ  29
+EFFN  3.288696
+CKSUM 3372901085
+STATS LOCAL MSV       -8.0570  0.71933
+STATS LOCAL VITERBI   -7.4166  0.71933
+STATS LOCAL FORWARD   -4.4707  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21838  1.38684  1.60959  1.36862
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  0.00000        *
+      1   3.07758  2.58812  3.12615  0.18046      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+      2   0.14335  3.36932  2.79481  3.26995      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+      3   0.14335  3.36932  2.79481  3.26995      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+      4   3.42049  0.13172  3.47049  2.81981      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+      5   3.07758  2.58812  3.12615  0.18046      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+      6   3.42049  0.13172  3.47049  2.81981      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+      7   3.07758  2.58812  3.12615  0.18046      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+      8   3.42049  0.13172  3.47049  2.81981      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+      9   0.14335  3.36932  2.79481  3.26995      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     10   0.14335  3.36932  2.79481  3.26995     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     11   3.42049  0.13172  3.47049  2.81981     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     12   0.14335  3.36932  2.79481  3.26995     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     13   0.14335  3.36932  2.79481  3.26995     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     14   3.07758  2.58812  3.12615  0.18046     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     15   2.93988  3.57664  0.11838  3.48016     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     16   2.93988  3.57664  0.11838  3.48016     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     17   0.14335  3.36932  2.79481  3.26995     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     18   3.07758  2.58812  3.12615  0.18046     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     19   3.42049  0.13172  3.47049  2.81981     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     20   3.07758  2.58812  3.12615  0.18046     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     21   3.42049  0.13172  3.47049  2.81981     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     22   3.07758  2.58812  3.12615  0.18046     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     23   0.14335  3.36932  2.79481  3.26995     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     24   2.93988  3.57664  0.11838  3.48016     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     25   2.93988  3.57664  0.11838  3.48016     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     26   3.42049  0.13172  3.47049  2.81981     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     27   3.07758  2.58812  3.12615  0.18046     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     28   3.42049  0.13172  3.47049  2.81981     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     29   3.07758  2.58812  3.12615  0.18046     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     30   3.07758  2.58812  3.12615  0.18046     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     31   2.93988  3.57664  0.11838  3.48016     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     32   3.42049  0.13172  3.47049  2.81981     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     33   0.14335  3.36932  2.79481  3.26995     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     34   3.07758  2.58812  3.12615  0.18046     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     35   3.42049  0.13172  3.47049  2.81981     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     36   2.93988  3.57664  0.11838  3.48016     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     37   0.14335  3.36932  2.79481  3.26995     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     38   3.07758  2.58812  3.12615  0.18046     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     39   2.93988  3.57664  0.11838  3.48016     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     40   0.14335  3.36932  2.79481  3.26995     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     41   0.14335  3.36932  2.79481  3.26995     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     42   2.93988  3.57664  0.11838  3.48016     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     43   0.14335  3.36932  2.79481  3.26995     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     44   0.14335  3.36932  2.79481  3.26995     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00528  4.00528  1.46634  0.26236  1.09861  0.40547
+     45   3.42049  0.13172  3.47049  2.81981     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01873  3.98689        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Cr_58S_start_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 13:48:14 2012
+NSEQ  11
+EFFN  3.332764
+CKSUM 4220584664
+STATS LOCAL MSV       -8.2403  0.71932
+STATS LOCAL VITERBI   -7.6155  0.71932
+STATS LOCAL FORWARD   -4.1698  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33529  1.38105  1.53687  1.30729
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  0.00000        *
+      1   3.43682  0.12977  3.48612  2.83170      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
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+     42   2.34240  3.26537  0.19488  3.15144     42 - -
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+          1.38629  1.38629  1.38629  1.38629
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+     45   3.43682  0.12977  3.48612  2.83170     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01858  3.99503        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:30:50 2012
+NSEQ  123
+EFFN  3.209381
+CKSUM 2380382984
+STATS LOCAL MSV       -8.1262  0.71931
+STATS LOCAL VITERBI   -7.8256  0.71931
+STATS LOCAL FORWARD   -4.3030  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40575  1.26346  1.38423  1.50676
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99072  3.99072  1.46634  0.26236  0.00000        *
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+     43   0.14688  3.34329  2.77784  3.24148     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99072  3.99072  1.46634  0.26236  1.09861  0.40547
+     44   3.39046  0.13541  3.44171  2.79784     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99072  3.99072  1.46634  0.26236  1.09861  0.40547
+     45   3.39046  0.13541  3.44171  2.79784     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01901  3.97206        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_eighteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:32:24 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3760255109
+STATS LOCAL MSV       -8.0117  0.71991
+STATS LOCAL VITERBI   -7.8366  0.71991
+STATS LOCAL FORWARD   -3.8741  0.71991
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47484  1.21485  1.25825  1.65926
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.86982  3.47591  0.13017  3.36931      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   3.30705  0.14631  3.36166  2.73626     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.86982  3.47591  0.13017  3.36931     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.86982  3.47591  0.13017  3.36931     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_eleven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:31:11 2012
+NSEQ  5
+EFFN  3.325195
+CKSUM 4104835367
+STATS LOCAL MSV       -8.0530  0.71934
+STATS LOCAL VITERBI   -7.8360  0.71934
+STATS LOCAL FORWARD   -4.2727  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40144  1.29150  1.38068  1.48064
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  0.00000        *
+      1   3.43404  0.13010  3.48346  2.82967      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      2   0.14179  3.38107  2.80245  3.28281      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      3   0.14179  3.38107  2.80245  3.28281      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      4   3.43404  0.13010  3.48346  2.82967      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      5   3.43404  0.13010  3.48346  2.82967      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      6   0.14179  3.38107  2.80245  3.28281      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      7   2.94809  3.58857  0.11707  3.49333      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      8   2.43340  0.73754  2.50592  1.04307      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      9   0.14179  3.38107  2.80245  3.28281      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     10   2.94809  3.58857  0.11707  3.49333     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     11   3.43404  0.13010  3.48346  2.82967     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     12   2.94809  3.58857  0.11707  3.49333     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     13   3.08942  2.59566  3.13755  0.17855     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     14   3.08942  2.59566  3.13755  0.17855     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     15   2.94809  3.58857  0.11707  3.49333     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     16   2.94809  3.58857  0.11707  3.49333     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     17   0.14179  3.38107  2.80245  3.28281     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     18   3.08942  2.59566  3.13755  0.17855     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     19   3.43404  0.13010  3.48346  2.82967     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     20   3.43404  0.13010  3.48346  2.82967     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     21   3.43404  0.13010  3.48346  2.82967     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     22   3.08942  2.59566  3.13755  0.17855     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     23   3.08942  2.59566  3.13755  0.17855     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     24   2.94809  3.58857  0.11707  3.49333     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     25   2.94809  3.58857  0.11707  3.49333     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     26   3.43404  0.13010  3.48346  2.82967     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     27   0.14179  3.38107  2.80245  3.28281     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     28   3.08942  2.59566  3.13755  0.17855     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     29   2.94809  3.58857  0.11707  3.49333     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     30   3.08942  2.59566  3.13755  0.17855     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     31   3.43404  0.13010  3.48346  2.82967     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     32   0.14179  3.38107  2.80245  3.28281     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     33   3.08942  2.59566  3.13755  0.17855     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     34   3.08942  2.59566  3.13755  0.17855     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     35   3.43404  0.13010  3.48346  2.82967     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     36   2.94809  3.58857  0.11707  3.49333     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     37   0.14179  3.38107  2.80245  3.28281     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     38   3.08942  2.59566  3.13755  0.17855     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     39   2.94809  3.58857  0.11707  3.49333     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     40   0.14179  3.38107  2.80245  3.28281     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     41   0.14179  3.38107  2.80245  3.28281     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     42   2.94809  3.58857  0.11707  3.49333     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     43   0.14179  3.38107  2.80245  3.28281     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     44   3.43404  0.13010  3.48346  2.82967     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     45   3.43404  0.13010  3.48346  2.82967     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01860  3.99364        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_fifteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:31:54 2012
+NSEQ  8
+EFFN  3.214844
+CKSUM 337714392
+STATS LOCAL MSV       -8.2169  0.71931
+STATS LOCAL VITERBI   -7.9769  0.71931
+STATS LOCAL FORWARD   -4.3014  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33893  1.32649  1.38153  1.50836
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  0.00000        *
+      1   3.39256  0.13515  3.44371  2.79938      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      2   0.14663  3.34511  2.77903  3.24347      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      3   0.14663  3.34511  2.77903  3.24347      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      4   3.39256  0.13515  3.44371  2.79938      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      5   3.05326  2.57263  3.10276  0.18448      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      6   2.92285  3.55196  0.12115  3.45295      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      7   2.92285  3.55196  0.12115  3.45295      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      8   3.05326  2.57263  3.10276  0.18448      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      9   0.14663  3.34511  2.77903  3.24347      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     10   2.92285  3.55196  0.12115  3.45295     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     11   3.39256  0.13515  3.44371  2.79938     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     12   0.14663  3.34511  2.77903  3.24347     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     13   3.05326  2.57263  3.10276  0.18448     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     14   3.05326  2.57263  3.10276  0.18448     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     15   2.92285  3.55196  0.12115  3.45295     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     16   2.92285  3.55196  0.12115  3.45295     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     17   0.14663  3.34511  2.77903  3.24347     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     18   3.05326  2.57263  3.10276  0.18448     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     19   3.39256  0.13515  3.44371  2.79938     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     20   3.39256  0.13515  3.44371  2.79938     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     21   3.39256  0.13515  3.44371  2.79938     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     22   3.05326  2.57263  3.10276  0.18448     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     23   3.05326  2.57263  3.10276  0.18448     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     24   2.92285  3.55196  0.12115  3.45295     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     25   2.92285  3.55196  0.12115  3.45295     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     26   3.39256  0.13515  3.44371  2.79938     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     27   0.14663  3.34511  2.77903  3.24347     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     28   3.39256  0.13515  3.44371  2.79938     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     29   2.92285  3.55196  0.12115  3.45295     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     30   3.39256  0.13515  3.44371  2.79938     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     31   3.39256  0.13515  3.44371  2.79938     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     32   0.14663  3.34511  2.77903  3.24347     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     33   3.05326  2.57263  3.10276  0.18448     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     34   3.05326  2.57263  3.10276  0.18448     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     35   3.39256  0.13515  3.44371  2.79938     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     36   2.92285  3.55196  0.12115  3.45295     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     37   0.14663  3.34511  2.77903  3.24347     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     38   3.05326  2.57263  3.10276  0.18448     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     39   2.92285  3.55196  0.12115  3.45295     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     40   0.14663  3.34511  2.77903  3.24347     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     41   0.14663  3.34511  2.77903  3.24347     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     42   2.92285  3.55196  0.12115  3.45295     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     43   0.14663  3.34511  2.77903  3.24347     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     44   0.14663  3.34511  2.77903  3.24347     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     45   3.39256  0.13515  3.44371  2.79938     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01899  3.97309        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:30:21 2012
+NSEQ  72
+EFFN  3.159668
+CKSUM 3342517671
+STATS LOCAL MSV       -8.0869  0.71932
+STATS LOCAL VITERBI   -7.8283  0.71932
+STATS LOCAL FORWARD   -4.2649  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55209  1.20895  1.25867  1.58157
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  0.00000        *
+      1   3.37120  0.13784  3.42324  2.78371      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+      2   0.14919  3.32663  2.76694  3.22326      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+      3   0.14919  3.32663  2.76694  3.22326      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+      4   3.37120  0.13784  3.42324  2.78371      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+      5   3.37120  0.13784  3.42324  2.78371      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+      6   2.90973  3.53305  0.12333  3.43212      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+      7   2.90973  3.53305  0.12333  3.43212      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+      8   3.37120  0.13784  3.42324  2.78371      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+      9   2.90973  3.53305  0.12333  3.43212      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     10   2.90973  3.53305  0.12333  3.43212     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     11   3.37120  0.13784  3.42324  2.78371     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     12   2.90973  3.53305  0.12333  3.43212     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     13   3.03479  2.56084  3.08498  0.18760     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     14   3.03479  2.56084  3.08498  0.18760     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     15   2.90973  3.53305  0.12333  3.43212     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     16   2.90973  3.53305  0.12333  3.43212     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     17   0.14919  3.32663  2.76694  3.22326     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     18   3.03479  2.56084  3.08498  0.18760     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     19   3.37120  0.13784  3.42324  2.78371     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     20   3.37120  0.13784  3.42324  2.78371     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     21   3.37120  0.13784  3.42324  2.78371     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     22   3.03479  2.56084  3.08498  0.18760     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     23   3.03479  2.56084  3.08498  0.18760     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     24   2.90973  3.53305  0.12333  3.43212     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     25   2.90973  3.53305  0.12333  3.43212     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     26   3.37120  0.13784  3.42324  2.78371     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     27   0.14919  3.32663  2.76694  3.22326     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     28   3.37120  0.13784  3.42324  2.78371     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     29   2.90973  3.53305  0.12333  3.43212     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     30   3.03479  2.56084  3.08498  0.18760     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     31   3.37120  0.13784  3.42324  2.78371     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     32   0.14919  3.32663  2.76694  3.22326     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     33   3.03479  2.56084  3.08498  0.18760     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     34   3.03479  2.56084  3.08498  0.18760     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     35   3.37120  0.13784  3.42324  2.78371     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     36   2.90973  3.53305  0.12333  3.43212     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     37   0.14919  3.32663  2.76694  3.22326     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     38   3.03479  2.56084  3.08498  0.18760     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     39   2.90973  3.53305  0.12333  3.43212     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     40   0.14919  3.32663  2.76694  3.22326     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     41   0.14919  3.32663  2.76694  3.22326     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     42   2.90973  3.53305  0.12333  3.43212     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     43   0.14919  3.32663  2.76694  3.22326     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     44   3.37120  0.13784  3.42324  2.78371     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98149  3.98149  1.46634  0.26236  1.09861  0.40547
+     45   3.37120  0.13784  3.42324  2.78371     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01920  3.96265        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:30:14 2012
+NSEQ  21
+EFFN  3.181274
+CKSUM 4197352722
+STATS LOCAL MSV       -8.0600  0.71932
+STATS LOCAL VITERBI   -7.8099  0.71932
+STATS LOCAL FORWARD   -4.2440  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55111  1.26477  1.25764  1.50797
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  0.00000        *
+      1   3.37961  0.13677  3.43131  2.78989      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+      2   0.14817  3.33390  2.77171  3.23122      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+      3   0.14817  3.33390  2.77171  3.23122      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+      4   3.37961  0.13677  3.43131  2.78989      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+      5   3.37961  0.13677  3.43131  2.78989      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+      6   2.91491  3.54050  0.12246  3.44033      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+      7   2.91491  3.54050  0.12246  3.44033      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+      8   3.04205  2.56548  3.09198  0.18637      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+      9   2.91491  3.54050  0.12246  3.44033      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     10   2.91491  3.54050  0.12246  3.44033     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     11   3.37961  0.13677  3.43131  2.78989     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     12   2.91491  3.54050  0.12246  3.44033     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     13   3.04205  2.56548  3.09198  0.18637     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     14   3.04205  2.56548  3.09198  0.18637     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     15   2.91491  3.54050  0.12246  3.44033     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     16   2.91491  3.54050  0.12246  3.44033     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     17   0.14817  3.33390  2.77171  3.23122     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     18   3.04205  2.56548  3.09198  0.18637     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     19   3.37961  0.13677  3.43131  2.78989     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     20   3.37961  0.13677  3.43131  2.78989     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     21   3.37961  0.13677  3.43131  2.78989     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     22   3.04205  2.56548  3.09198  0.18637     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     23   3.04205  2.56548  3.09198  0.18637     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     24   2.91491  3.54050  0.12246  3.44033     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     25   2.91491  3.54050  0.12246  3.44033     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     26   3.37961  0.13677  3.43131  2.78989     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     27   0.14817  3.33390  2.77171  3.23122     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     28   3.37961  0.13677  3.43131  2.78989     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     29   2.91491  3.54050  0.12246  3.44033     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     30   3.04205  2.56548  3.09198  0.18637     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     31   3.37961  0.13677  3.43131  2.78989     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     32   0.14817  3.33390  2.77171  3.23122     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     33   3.04205  2.56548  3.09198  0.18637     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     34   3.04205  2.56548  3.09198  0.18637     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     35   3.37961  0.13677  3.43131  2.78989     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     36   2.91491  3.54050  0.12246  3.44033     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     37   0.14817  3.33390  2.77171  3.23122     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     38   3.04205  2.56548  3.09198  0.18637     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     39   2.91491  3.54050  0.12246  3.44033     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     40   0.14817  3.33390  2.77171  3.23122     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     41   0.14817  3.33390  2.77171  3.23122     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     42   2.91491  3.54050  0.12246  3.44033     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     43   0.14817  3.33390  2.77171  3.23122     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     44   3.37961  0.13677  3.43131  2.78989     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98551  3.98551  1.46634  0.26236  1.09861  0.40547
+     45   3.37961  0.13677  3.43131  2.78989     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01912  3.96675        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_fourteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:31:45 2012
+NSEQ  60
+EFFN  3.226318
+CKSUM 2989335639
+STATS LOCAL MSV       -8.0127  0.71932
+STATS LOCAL VITERBI   -7.7542  0.71932
+STATS LOCAL FORWARD   -4.3740  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27747  1.32550  1.45124  1.50820
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  0.00000        *
+      1   3.39694  0.13461  3.44792  2.80260      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+      2   0.14611  3.34891  2.78151  3.24762      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+      3   0.14611  3.34891  2.78151  3.24762      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+      4   3.39694  0.13461  3.44792  2.80260      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+      5   3.39694  0.13461  3.44792  2.80260      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+      6   2.92553  3.55584  0.12071  3.45723      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+      7   2.92553  3.55584  0.12071  3.45723      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+      8   3.05707  2.57506  3.10643  0.18384      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+      9   0.14611  3.34891  2.78151  3.24762      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     10   2.92553  3.55584  0.12071  3.45723     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     11   3.39694  0.13461  3.44792  2.80260     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     12   0.14611  3.34891  2.78151  3.24762     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     13   3.05707  2.57506  3.10643  0.18384     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     14   3.05707  2.57506  3.10643  0.18384     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     15   2.92553  3.55584  0.12071  3.45723     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     16   2.92553  3.55584  0.12071  3.45723     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     17   0.14611  3.34891  2.78151  3.24762     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     18   3.05707  2.57506  3.10643  0.18384     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     19   3.39694  0.13461  3.44792  2.80260     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     20   3.39694  0.13461  3.44792  2.80260     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     21   3.39694  0.13461  3.44792  2.80260     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     22   3.05707  2.57506  3.10643  0.18384     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     23   3.05707  2.57506  3.10643  0.18384     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     24   2.92553  3.55584  0.12071  3.45723     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     25   2.92553  3.55584  0.12071  3.45723     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     26   3.39694  0.13461  3.44792  2.80260     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     27   0.14611  3.34891  2.78151  3.24762     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     28   3.39694  0.13461  3.44792  2.80260     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     29   0.14611  3.34891  2.78151  3.24762     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     30   3.05707  2.57506  3.10643  0.18384     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     31   3.39694  0.13461  3.44792  2.80260     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     32   0.14611  3.34891  2.78151  3.24762     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     33   3.05707  2.57506  3.10643  0.18384     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     34   3.05707  2.57506  3.10643  0.18384     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     35   3.39694  0.13461  3.44792  2.80260     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     36   2.92553  3.55584  0.12071  3.45723     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     37   0.14611  3.34891  2.78151  3.24762     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     38   3.05707  2.57506  3.10643  0.18384     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     39   2.92553  3.55584  0.12071  3.45723     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     40   0.14611  3.34891  2.78151  3.24762     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     41   0.14611  3.34891  2.78151  3.24762     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     42   2.92553  3.55584  0.12071  3.45723     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     43   0.14611  3.34891  2.78151  3.24762     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     44   0.14611  3.34891  2.78151  3.24762     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99385  3.99385  1.46634  0.26236  1.09861  0.40547
+     45   3.39694  0.13461  3.44792  2.80260     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01895  3.97525        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:30:59 2012
+NSEQ  15
+EFFN  3.262939
+CKSUM 2354692577
+STATS LOCAL MSV       -8.0495  0.71933
+STATS LOCAL VITERBI   -7.7670  0.71933
+STATS LOCAL FORWARD   -4.2451  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.46726  1.26148  1.33110  1.50498
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  0.00000        *
+      1   3.41083  0.13290  3.46123  2.81275      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+      2   0.14447  3.36094  2.78936  3.26079      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+      3   0.14447  3.36094  2.78936  3.26079      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+      4   3.41083  0.13290  3.46123  2.81275      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+      5   3.41083  0.13290  3.46123  2.81275      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+      6   2.93400  3.56812  0.11933  3.47076      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+      7   2.93400  3.56812  0.11933  3.47076      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+      8   3.06915  2.58276  3.11805  0.18185      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+      9   0.14447  3.36094  2.78936  3.26079      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     10   2.93400  3.56812  0.11933  3.47076     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     11   3.41083  0.13290  3.46123  2.81275     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     12   2.93400  3.56812  0.11933  3.47076     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     13   3.06915  2.58276  3.11805  0.18185     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     14   3.06915  2.58276  3.11805  0.18185     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     15   2.93400  3.56812  0.11933  3.47076     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     16   2.93400  3.56812  0.11933  3.47076     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     17   0.14447  3.36094  2.78936  3.26079     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     18   3.06915  2.58276  3.11805  0.18185     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     19   3.41083  0.13290  3.46123  2.81275     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     20   3.41083  0.13290  3.46123  2.81275     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     21   3.41083  0.13290  3.46123  2.81275     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     22   3.06915  2.58276  3.11805  0.18185     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     23   3.06915  2.58276  3.11805  0.18185     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     24   2.93400  3.56812  0.11933  3.47076     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     25   2.93400  3.56812  0.11933  3.47076     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     26   3.41083  0.13290  3.46123  2.81275     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     27   0.14447  3.36094  2.78936  3.26079     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     28   3.41083  0.13290  3.46123  2.81275     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     29   1.84895  2.92963  0.31711  2.79804     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     30   3.06915  2.58276  3.11805  0.18185     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     31   3.41083  0.13290  3.46123  2.81275     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     32   0.14447  3.36094  2.78936  3.26079     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     33   3.06915  2.58276  3.11805  0.18185     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     34   3.06915  2.58276  3.11805  0.18185     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     35   3.41083  0.13290  3.46123  2.81275     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     36   2.93400  3.56812  0.11933  3.47076     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     37   0.14447  3.36094  2.78936  3.26079     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     38   3.06915  2.58276  3.11805  0.18185     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     39   2.93400  3.56812  0.11933  3.47076     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     40   0.14447  3.36094  2.78936  3.26079     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     41   0.14447  3.36094  2.78936  3.26079     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     42   2.93400  3.56812  0.11933  3.47076     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     43   0.14447  3.36094  2.78936  3.26079     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     44   3.41083  0.13290  3.46123  2.81275     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     45   3.41083  0.13290  3.46123  2.81275     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01882  3.98210        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_nineteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:32:32 2012
+NSEQ  7
+EFFN  3.188965
+CKSUM 3673879589
+STATS LOCAL MSV       -8.0297  0.71932
+STATS LOCAL VITERBI   -7.7429  0.71932
+STATS LOCAL FORWARD   -4.0892  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47412  1.32732  1.25550  1.51004
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  0.00000        *
+      1   3.38259  0.13640  3.43416  2.79207      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+      2   0.14782  3.33648  2.77339  3.23404      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+      3   0.14782  3.33648  2.77339  3.23404      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+      4   3.38259  0.13640  3.43416  2.79207      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+      5   3.38259  0.13640  3.43416  2.79207      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+      6   2.91674  3.54314  0.12216  3.44323      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+      7   2.91674  3.54314  0.12216  3.44323      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+      8   3.04463  2.56713  3.09446  0.18593      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+      9   0.14782  3.33648  2.77339  3.23404      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     10   2.91674  3.54314  0.12216  3.44323     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     11   3.38259  0.13640  3.43416  2.79207     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     12   2.91674  3.54314  0.12216  3.44323     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     13   3.04463  2.56713  3.09446  0.18593     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     14   3.04463  2.56713  3.09446  0.18593     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     15   2.91674  3.54314  0.12216  3.44323     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     16   2.91674  3.54314  0.12216  3.44323     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     17   0.14782  3.33648  2.77339  3.23404     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     18   3.04463  2.56713  3.09446  0.18593     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     19   3.38259  0.13640  3.43416  2.79207     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     20   3.38259  0.13640  3.43416  2.79207     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     21   3.38259  0.13640  3.43416  2.79207     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     22   3.04463  2.56713  3.09446  0.18593     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     23   3.04463  2.56713  3.09446  0.18593     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     24   2.91674  3.54314  0.12216  3.44323     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     25   2.91674  3.54314  0.12216  3.44323     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     26   3.38259  0.13640  3.43416  2.79207     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     27   0.14782  3.33648  2.77339  3.23404     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     28   3.38259  0.13640  3.43416  2.79207     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     29   2.91674  3.54314  0.12216  3.44323     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     30   3.04463  2.56713  3.09446  0.18593     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     31   3.04463  2.56713  3.09446  0.18593     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     32   2.91674  3.54314  0.12216  3.44323     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     33   0.14782  3.33648  2.77339  3.23404     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     34   3.04463  2.56713  3.09446  0.18593     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     35   3.38259  0.13640  3.43416  2.79207     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     36   2.91674  3.54314  0.12216  3.44323     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     37   0.14782  3.33648  2.77339  3.23404     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     38   3.04463  2.56713  3.09446  0.18593     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     39   2.91674  3.54314  0.12216  3.44323     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     40   0.14782  3.33648  2.77339  3.23404     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     41   0.14782  3.33648  2.77339  3.23404     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     42   2.91674  3.54314  0.12216  3.44323     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     43   0.14782  3.33648  2.77339  3.23404     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     44   3.38259  0.13640  3.43416  2.79207     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     45   3.38259  0.13640  3.43416  2.79207     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01909  3.96821        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:29:50 2012
+NSEQ  160
+EFFN  3.178711
+CKSUM 3813106490
+STATS LOCAL MSV       -8.0854  0.71932
+STATS LOCAL VITERBI   -7.7431  0.71932
+STATS LOCAL FORWARD   -4.2930  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40538  1.26732  1.31745  1.58316
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  0.00000        *
+      1   3.37862  0.13690  3.43035  2.78916      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      2   0.14829  3.33304  2.77114  3.23028      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      3   0.14829  3.33304  2.77114  3.23028      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      4   3.37862  0.13690  3.43035  2.78916      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      5   3.37862  0.13690  3.43035  2.78916      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      6   2.91430  3.53962  0.12257  3.43936      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      7   2.91430  3.53962  0.12257  3.43936      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      8   3.04119  2.56493  3.09115  0.18651      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      9   0.14829  3.33304  2.77114  3.23028      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     10   2.91430  3.53962  0.12257  3.43936     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     11   3.37862  0.13690  3.43035  2.78916     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     12   2.91430  3.53962  0.12257  3.43936     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     13   0.14829  3.33304  2.77114  3.23028     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     14   3.04119  2.56493  3.09115  0.18651     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     15   2.91430  3.53962  0.12257  3.43936     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     16   2.91430  3.53962  0.12257  3.43936     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     17   0.14829  3.33304  2.77114  3.23028     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     18   3.04119  2.56493  3.09115  0.18651     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     19   3.37862  0.13690  3.43035  2.78916     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     20   3.37862  0.13690  3.43035  2.78916     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     21   3.37862  0.13690  3.43035  2.78916     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     22   3.04119  2.56493  3.09115  0.18651     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     23   3.04119  2.56493  3.09115  0.18651     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     24   2.91430  3.53962  0.12257  3.43936     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     25   2.91430  3.53962  0.12257  3.43936     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     26   3.37862  0.13690  3.43035  2.78916     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     27   0.14829  3.33304  2.77114  3.23028     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     28   3.37862  0.13690  3.43035  2.78916     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     29   2.91430  3.53962  0.12257  3.43936     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     30   3.04119  2.56493  3.09115  0.18651     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     31   3.37862  0.13690  3.43035  2.78916     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     32   0.14829  3.33304  2.77114  3.23028     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     33   3.04119  2.56493  3.09115  0.18651     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     34   3.04119  2.56493  3.09115  0.18651     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     35   3.37862  0.13690  3.43035  2.78916     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     36   2.91430  3.53962  0.12257  3.43936     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     37   0.14829  3.33304  2.77114  3.23028     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     38   3.04119  2.56493  3.09115  0.18651     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     39   2.91430  3.53962  0.12257  3.43936     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     40   0.14829  3.33304  2.77114  3.23028     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     41   0.14829  3.33304  2.77114  3.23028     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     42   2.91430  3.53962  0.12257  3.43936     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     43   0.14829  3.33304  2.77114  3.23028     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     44   3.37862  0.13690  3.43035  2.78916     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     45   3.37862  0.13690  3.43035  2.78916     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01913  3.96627        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:30:38 2012
+NSEQ  8
+EFFN  3.191406
+CKSUM 1958988569
+STATS LOCAL MSV       -8.0481  0.71933
+STATS LOCAL VITERBI   -7.8749  0.71933
+STATS LOCAL FORWARD   -4.1612  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47565  1.26416  1.31903  1.50734
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  0.00000        *
+      1   3.38354  0.13628  3.43507  2.79277      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      2   0.14770  3.33730  2.77393  3.23493      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      3   0.14770  3.33730  2.77393  3.23493      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      4   3.38354  0.13628  3.43507  2.79277      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      5   3.38354  0.13628  3.43507  2.79277      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      6   0.14770  3.33730  2.77393  3.23493      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      7   2.91732  3.54398  0.12206  3.44415      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      8   3.04545  2.56765  3.09524  0.18579      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      9   0.14770  3.33730  2.77393  3.23493      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     10   2.91732  3.54398  0.12206  3.44415     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     11   3.38354  0.13628  3.43507  2.79277     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     12   2.91732  3.54398  0.12206  3.44415     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     13   3.04545  2.56765  3.09524  0.18579     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     14   3.04545  2.56765  3.09524  0.18579     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     15   2.91732  3.54398  0.12206  3.44415     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     16   2.91732  3.54398  0.12206  3.44415     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     17   0.14770  3.33730  2.77393  3.23493     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     18   3.04545  2.56765  3.09524  0.18579     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     19   3.38354  0.13628  3.43507  2.79277     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     20   3.38354  0.13628  3.43507  2.79277     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     21   3.38354  0.13628  3.43507  2.79277     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     22   3.04545  2.56765  3.09524  0.18579     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     23   3.04545  2.56765  3.09524  0.18579     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     24   2.91732  3.54398  0.12206  3.44415     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     25   2.91732  3.54398  0.12206  3.44415     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     26   3.38354  0.13628  3.43507  2.79277     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     27   0.14770  3.33730  2.77393  3.23493     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     28   3.38354  0.13628  3.43507  2.79277     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     29   2.91732  3.54398  0.12206  3.44415     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     30   3.04545  2.56765  3.09524  0.18579     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     31   3.38354  0.13628  3.43507  2.79277     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     32   2.91732  3.54398  0.12206  3.44415     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     33   3.04545  2.56765  3.09524  0.18579     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     34   3.04545  2.56765  3.09524  0.18579     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     35   3.38354  0.13628  3.43507  2.79277     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     36   2.91732  3.54398  0.12206  3.44415     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     37   0.14770  3.33730  2.77393  3.23493     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     38   3.04545  2.56765  3.09524  0.18579     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     39   2.91732  3.54398  0.12206  3.44415     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     40   0.14770  3.33730  2.77393  3.23493     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     41   0.14770  3.33730  2.77393  3.23493     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     42   2.91732  3.54398  0.12206  3.44415     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     43   0.14770  3.33730  2.77393  3.23493     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     44   3.38354  0.13628  3.43507  2.79277     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     45   3.38354  0.13628  3.43507  2.79277     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01908  3.96867        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_seventeen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:32:14 2012
+NSEQ  28
+EFFN  3.332520
+CKSUM 3378749724
+STATS LOCAL MSV       -8.2298  0.71932
+STATS LOCAL VITERBI   -7.9126  0.71932
+STATS LOCAL FORWARD   -4.3878  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40152  1.29653  1.38029  1.47494
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  0.00000        *
+      1   3.43673  0.12978  3.48604  2.83163      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+      2   0.14148  3.38341  2.80397  3.28537      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+      3   0.14148  3.38341  2.80397  3.28537      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+      4   3.43673  0.12978  3.48604  2.83163      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+      5   3.09178  2.59716  3.13982  0.17817      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+      6   2.94972  3.59095  0.11681  3.49595      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+      7   2.94972  3.59095  0.11681  3.49595      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+      8   3.09178  2.59716  3.13982  0.17817      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+      9   0.14148  3.38341  2.80397  3.28537      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     10   2.94972  3.59095  0.11681  3.49595     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     11   3.43673  0.12978  3.48604  2.83163     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     12   0.14148  3.38341  2.80397  3.28537     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     13   3.09178  2.59716  3.13982  0.17817     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     14   3.09178  2.59716  3.13982  0.17817     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     15   2.94972  3.59095  0.11681  3.49595     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     16   2.94972  3.59095  0.11681  3.49595     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     17   0.14148  3.38341  2.80397  3.28537     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     18   3.09178  2.59716  3.13982  0.17817     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     19   3.43673  0.12978  3.48604  2.83163     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     20   3.43673  0.12978  3.48604  2.83163     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     21   3.43673  0.12978  3.48604  2.83163     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     22   3.09178  2.59716  3.13982  0.17817     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     23   3.09178  2.59716  3.13982  0.17817     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     24   2.94972  3.59095  0.11681  3.49595     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     25   2.94972  3.59095  0.11681  3.49595     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     26   3.43673  0.12978  3.48604  2.83163     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     27   0.14148  3.38341  2.80397  3.28537     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     28   2.40836  0.87702  2.48076  0.89078     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     29   2.94972  3.59095  0.11681  3.49595     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     30   3.43673  0.12978  3.48604  2.83163     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     31   3.43673  0.12978  3.48604  2.83163     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     32   0.14148  3.38341  2.80397  3.28537     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     33   3.09178  2.59716  3.13982  0.17817     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     34   3.09178  2.59716  3.13982  0.17817     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     35   3.43673  0.12978  3.48604  2.83163     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     36   2.94972  3.59095  0.11681  3.49595     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     37   0.14148  3.38341  2.80397  3.28537     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     38   3.09178  2.59716  3.13982  0.17817     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     39   2.94972  3.59095  0.11681  3.49595     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     40   0.14148  3.38341  2.80397  3.28537     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     41   0.14148  3.38341  2.80397  3.28537     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     42   2.94972  3.59095  0.11681  3.49595     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     43   0.14148  3.38341  2.80397  3.28537     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     44   3.43673  0.12978  3.48604  2.83163     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01323  4.01323  1.46634  0.26236  1.09861  0.40547
+     45   3.43673  0.12978  3.48604  2.83163     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01858  3.99499        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:30:30 2012
+NSEQ  15
+EFFN  3.284912
+CKSUM 4135553983
+STATS LOCAL MSV       -8.1380  0.71932
+STATS LOCAL VITERBI   -7.7888  0.71932
+STATS LOCAL FORWARD   -4.3147  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40354  1.27617  1.38197  1.49571
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00459  4.00459  1.46634  0.26236  0.00000        *
+      1   3.41908  0.13189  3.46913  2.81877      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00459  4.00459  1.46634  0.26236  1.09861  0.40547
+      2   0.14351  3.36809  2.79401  3.26861      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00459  4.00459  1.46634  0.26236  1.09861  0.40547
+      3   0.14351  3.36809  2.79401  3.26861      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00459  4.00459  1.46634  0.26236  1.09861  0.40547
+      4   3.41908  0.13189  3.46913  2.81877      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00459  4.00459  1.46634  0.26236  1.09861  0.40547
+      5   3.41908  0.13189  3.46913  2.81877      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00459  4.00459  1.46634  0.26236  1.09861  0.40547
+      6   2.93902  3.57539  0.11852  3.47878      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00459  4.00459  1.46634  0.26236  1.09861  0.40547
+      7   2.93902  3.57539  0.11852  3.47878      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00459  4.00459  1.46634  0.26236  1.09861  0.40547
+      8   3.07634  2.58734  3.12497  0.18067      8 - -
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+      9   0.14351  3.36809  2.79401  3.26861      9 - -
+          1.38629  1.38629  1.38629  1.38629
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+     10   2.93902  3.57539  0.11852  3.47878     10 - -
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+     14   3.07634  2.58734  3.12497  0.18067     14 - -
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     40   0.14351  3.36809  2.79401  3.26861     40 - -
+          1.38629  1.38629  1.38629  1.38629
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+     41   0.14351  3.36809  2.79401  3.26861     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00459  4.00459  1.46634  0.26236  1.09861  0.40547
+     42   2.93902  3.57539  0.11852  3.47878     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00459  4.00459  1.46634  0.26236  1.09861  0.40547
+     43   0.14351  3.36809  2.79401  3.26861     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00459  4.00459  1.46634  0.26236  1.09861  0.40547
+     44   3.41908  0.13189  3.46913  2.81877     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00459  4.00459  1.46634  0.26236  1.09861  0.40547
+     45   3.41908  0.13189  3.46913  2.81877     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01874  3.98619        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_sixteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:32:03 2012
+NSEQ  6
+EFFN  3.237305
+CKSUM 1798337281
+STATS LOCAL MSV       -8.1605  0.71932
+STATS LOCAL VITERBI   -7.7756  0.71932
+STATS LOCAL FORWARD   -4.0916  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40649  1.25981  1.45598  1.43500
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  0.00000        *
+      1   3.40113  0.13409  3.45193  2.80566      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      2   0.14561  3.35254  2.78388  3.25159      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      3   0.14561  3.35254  2.78388  3.25159      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      4   3.40113  0.13409  3.45193  2.80566      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      5   3.06071  2.57738  3.10992  0.18324      5 - -
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+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      6   3.40113  0.13409  3.45193  2.80566      6 - -
+          1.38629  1.38629  1.38629  1.38629
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+      7   0.14561  3.35254  2.78388  3.25159      7 - -
+          1.38629  1.38629  1.38629  1.38629
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+      8   3.06071  2.57738  3.10992  0.18324      8 - -
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+      9   0.14561  3.35254  2.78388  3.25159      9 - -
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+     42   2.92809  3.55954  0.12029  3.46131     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     43   0.14561  3.35254  2.78388  3.25159     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     44   3.40113  0.13409  3.45193  2.80566     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     45   3.40113  0.13409  3.45193  2.80566     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01891  3.97731        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_thirteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:31:33 2012
+NSEQ  5
+EFFN  3.198242
+CKSUM 4258578240
+STATS LOCAL MSV       -8.0481  0.71931
+STATS LOCAL VITERBI   -7.8734  0.71931
+STATS LOCAL FORWARD   -4.1637  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47571  1.26408  1.31903  1.50738
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  0.00000        *
+      1   3.38618  0.13595  3.43760  2.79470      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      2   0.14739  3.33958  2.77542  3.23743      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      3   0.14739  3.33958  2.77542  3.23743      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      4   3.38618  0.13595  3.43760  2.79470      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      5   3.38618  0.13595  3.43760  2.79470      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      6   0.14739  3.33958  2.77542  3.23743      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      7   2.91894  3.54631  0.12180  3.44673      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      8   3.04773  2.56910  3.09744  0.18541      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      9   0.14739  3.33958  2.77542  3.23743      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     10   2.91894  3.54631  0.12180  3.44673     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     11   3.38618  0.13595  3.43760  2.79470     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     12   2.91894  3.54631  0.12180  3.44673     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     13   3.04773  2.56910  3.09744  0.18541     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     14   3.04773  2.56910  3.09744  0.18541     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     15   2.91894  3.54631  0.12180  3.44673     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     16   2.91894  3.54631  0.12180  3.44673     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     17   0.14739  3.33958  2.77542  3.23743     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     18   3.04773  2.56910  3.09744  0.18541     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     19   3.38618  0.13595  3.43760  2.79470     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     20   3.38618  0.13595  3.43760  2.79470     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     21   3.38618  0.13595  3.43760  2.79470     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     22   3.04773  2.56910  3.09744  0.18541     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     23   3.04773  2.56910  3.09744  0.18541     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     24   2.91894  3.54631  0.12180  3.44673     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     25   2.91894  3.54631  0.12180  3.44673     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     26   3.38618  0.13595  3.43760  2.79470     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     27   0.14739  3.33958  2.77542  3.23743     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     28   3.38618  0.13595  3.43760  2.79470     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     29   2.91894  3.54631  0.12180  3.44673     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     30   3.04773  2.56910  3.09744  0.18541     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     31   3.38618  0.13595  3.43760  2.79470     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     32   2.91894  3.54631  0.12180  3.44673     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     33   3.04773  2.56910  3.09744  0.18541     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     34   3.04773  2.56910  3.09744  0.18541     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     35   3.38618  0.13595  3.43760  2.79470     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     36   2.91894  3.54631  0.12180  3.44673     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     37   0.14739  3.33958  2.77542  3.23743     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     38   3.04773  2.56910  3.09744  0.18541     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     39   2.91894  3.54631  0.12180  3.44673     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     40   0.14739  3.33958  2.77542  3.23743     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     41   0.14739  3.33958  2.77542  3.23743     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     42   2.91894  3.54631  0.12180  3.44673     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     43   0.14739  3.33958  2.77542  3.23743     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     44   3.38618  0.13595  3.43760  2.79470     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     45   3.38618  0.13595  3.43760  2.79470     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01905  3.96996        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_thirty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:34:38 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1280679085
+STATS LOCAL MSV       -7.5499  0.72821
+STATS LOCAL VITERBI   -8.1157  0.72821
+STATS LOCAL FORWARD   -3.4558  0.72821
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29089  1.28500  1.57069  1.42537
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_thirtyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:34:45 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1404587952
+STATS LOCAL MSV       -7.4845  0.72803
+STATS LOCAL VITERBI   -8.1976  0.72803
+STATS LOCAL FORWARD   -3.3149  0.72803
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39991  1.28635  1.43924  1.42714
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_thirtythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:35:01 2012
+NSEQ  9
+EFFN  3.186035
+CKSUM 2146092560
+STATS LOCAL MSV       -8.0705  0.71931
+STATS LOCAL VITERBI   -7.9741  0.71931
+STATS LOCAL FORWARD   -4.0826  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55116  1.26470  1.25788  1.50770
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  0.00000        *
+      1   3.38146  0.13654  3.43308  2.79124      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+      2   0.14795  3.33550  2.77275  3.23296      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+      3   0.14795  3.33550  2.77275  3.23296      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+      4   3.38146  0.13654  3.43308  2.79124      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+      5   3.38146  0.13654  3.43308  2.79124      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+      6   3.04365  2.56650  3.09351  0.18610      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+      7   2.91604  3.54214  0.12228  3.44213      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+      8   3.04365  2.56650  3.09351  0.18610      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+      9   2.91604  3.54214  0.12228  3.44213      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     10   2.91604  3.54214  0.12228  3.44213     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     11   3.38146  0.13654  3.43308  2.79124     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     12   0.14795  3.33550  2.77275  3.23296     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     13   3.04365  2.56650  3.09351  0.18610     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     14   3.04365  2.56650  3.09351  0.18610     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     15   2.91604  3.54214  0.12228  3.44213     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     16   2.91604  3.54214  0.12228  3.44213     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     17   0.14795  3.33550  2.77275  3.23296     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     18   3.04365  2.56650  3.09351  0.18610     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     19   3.38146  0.13654  3.43308  2.79124     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     20   3.38146  0.13654  3.43308  2.79124     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     21   3.38146  0.13654  3.43308  2.79124     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     22   3.04365  2.56650  3.09351  0.18610     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     23   3.04365  2.56650  3.09351  0.18610     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     24   2.91604  3.54214  0.12228  3.44213     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     25   2.91604  3.54214  0.12228  3.44213     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     26   3.38146  0.13654  3.43308  2.79124     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     27   0.14795  3.33550  2.77275  3.23296     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     28   3.38146  0.13654  3.43308  2.79124     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     29   2.91604  3.54214  0.12228  3.44213     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     30   3.38146  0.13654  3.43308  2.79124     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     31   3.38146  0.13654  3.43308  2.79124     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     32   2.91604  3.54214  0.12228  3.44213     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     33   3.04365  2.56650  3.09351  0.18610     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     34   3.04365  2.56650  3.09351  0.18610     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     35   3.38146  0.13654  3.43308  2.79124     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     36   2.91604  3.54214  0.12228  3.44213     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     37   0.14795  3.33550  2.77275  3.23296     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     38   3.04365  2.56650  3.09351  0.18610     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     39   2.91604  3.54214  0.12228  3.44213     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     40   0.14795  3.33550  2.77275  3.23296     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     41   0.14795  3.33550  2.77275  3.23296     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     42   2.91604  3.54214  0.12228  3.44213     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     43   0.14795  3.33550  2.77275  3.23296     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     44   2.91604  3.54214  0.12228  3.44213     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     45   3.38146  0.13654  3.43308  2.79124     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01910  3.96765        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_thirtytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:34:53 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1740124319
+STATS LOCAL MSV       -7.3000  0.72807
+STATS LOCAL VITERBI   -8.0977  0.72807
+STATS LOCAL FORWARD   -3.2928  0.72807
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.19324  1.23913  1.64333  1.54276
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:30:05 2012
+NSEQ  190
+EFFN  3.174591
+CKSUM 2393398619
+STATS LOCAL MSV       -8.0249  0.71931
+STATS LOCAL VITERBI   -7.7396  0.71931
+STATS LOCAL FORWARD   -4.1980  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47702  1.20832  1.31976  1.58092
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  0.00000        *
+      1   3.37702  0.13710  3.42882  2.78798      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+      2   0.14849  3.33166  2.77024  3.22876      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+      3   0.14849  3.33166  2.77024  3.22876      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+      4   3.37702  0.13710  3.42882  2.78798      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+      5   3.37702  0.13710  3.42882  2.78798      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+      6   2.91331  3.53820  0.12273  3.43779      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+      7   2.91331  3.53820  0.12273  3.43779      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+      8   3.03981  2.56405  3.08982  0.18675      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+      9   0.14849  3.33166  2.77024  3.22876      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     10   2.91331  3.53820  0.12273  3.43779     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     11   3.37702  0.13710  3.42882  2.78798     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     12   2.91331  3.53820  0.12273  3.43779     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     13   3.37702  0.13710  3.42882  2.78798     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     14   3.03981  2.56405  3.08982  0.18675     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     15   2.91331  3.53820  0.12273  3.43779     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     16   2.91331  3.53820  0.12273  3.43779     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     17   0.14849  3.33166  2.77024  3.22876     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     18   3.03981  2.56405  3.08982  0.18675     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     19   3.37702  0.13710  3.42882  2.78798     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     20   3.37702  0.13710  3.42882  2.78798     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     21   3.37702  0.13710  3.42882  2.78798     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     22   3.03981  2.56405  3.08982  0.18675     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     23   3.03981  2.56405  3.08982  0.18675     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     24   2.91331  3.53820  0.12273  3.43779     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     25   2.91331  3.53820  0.12273  3.43779     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     26   3.37702  0.13710  3.42882  2.78798     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     27   0.14849  3.33166  2.77024  3.22876     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     28   3.37702  0.13710  3.42882  2.78798     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     29   2.91331  3.53820  0.12273  3.43779     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     30   3.03981  2.56405  3.08982  0.18675     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     31   3.37702  0.13710  3.42882  2.78798     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     32   0.14849  3.33166  2.77024  3.22876     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     33   3.03981  2.56405  3.08982  0.18675     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     34   3.03981  2.56405  3.08982  0.18675     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     35   3.37702  0.13710  3.42882  2.78798     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     36   2.91331  3.53820  0.12273  3.43779     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     37   0.14849  3.33166  2.77024  3.22876     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     38   3.03981  2.56405  3.08982  0.18675     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     39   2.91331  3.53820  0.12273  3.43779     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     40   0.14849  3.33166  2.77024  3.22876     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     41   0.14849  3.33166  2.77024  3.22876     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     42   2.91331  3.53820  0.12273  3.43779     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     43   0.14849  3.33166  2.77024  3.22876     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     44   3.37702  0.13710  3.42882  2.78798     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03792  3.98427  3.98427  1.46634  0.26236  1.09861  0.40547
+     45   3.37702  0.13710  3.42882  2.78798     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01914  3.96549        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_twelve_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:31:20 2012
+NSEQ  10
+EFFN  3.247070
+CKSUM 276171632
+STATS LOCAL MSV       -8.0864  0.71931
+STATS LOCAL VITERBI   -7.7588  0.71931
+STATS LOCAL FORWARD   -4.3267  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33910  1.32219  1.45330  1.43729
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  0.00000        *
+      1   3.40484  0.13363  3.45549  2.80837      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      2   0.14518  3.35575  2.78597  3.25510      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      3   0.14518  3.35575  2.78597  3.25510      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      4   3.40484  0.13363  3.45549  2.80837      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      5   3.40484  0.13363  3.45549  2.80837      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      6   0.14518  3.35575  2.78597  3.25510      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      7   2.93035  3.56282  0.11992  3.46492      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      8   3.06393  2.57943  3.11303  0.18271      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      9   0.14518  3.35575  2.78597  3.25510      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     10   0.14518  3.35575  2.78597  3.25510     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     11   3.40484  0.13363  3.45549  2.80837     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     12   2.93035  3.56282  0.11992  3.46492     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     13   3.06393  2.57943  3.11303  0.18271     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     14   3.06393  2.57943  3.11303  0.18271     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     15   2.93035  3.56282  0.11992  3.46492     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     16   2.93035  3.56282  0.11992  3.46492     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     17   0.14518  3.35575  2.78597  3.25510     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     18   3.06393  2.57943  3.11303  0.18271     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     19   3.40484  0.13363  3.45549  2.80837     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     20   3.40484  0.13363  3.45549  2.80837     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     21   3.40484  0.13363  3.45549  2.80837     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     22   3.06393  2.57943  3.11303  0.18271     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     23   3.06393  2.57943  3.11303  0.18271     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     24   2.93035  3.56282  0.11992  3.46492     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     25   2.93035  3.56282  0.11992  3.46492     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     26   3.40484  0.13363  3.45549  2.80837     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     27   0.14518  3.35575  2.78597  3.25510     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     28   3.06393  2.57943  3.11303  0.18271     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     29   2.93035  3.56282  0.11992  3.46492     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     30   3.06393  2.57943  3.11303  0.18271     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     31   3.40484  0.13363  3.45549  2.80837     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     32   0.14518  3.35575  2.78597  3.25510     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     33   3.06393  2.57943  3.11303  0.18271     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     34   3.06393  2.57943  3.11303  0.18271     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     35   3.40484  0.13363  3.45549  2.80837     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     36   2.93035  3.56282  0.11992  3.46492     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     37   0.14518  3.35575  2.78597  3.25510     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     38   3.06393  2.57943  3.11303  0.18271     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     39   2.93035  3.56282  0.11992  3.46492     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     40   0.14518  3.35575  2.78597  3.25510     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     41   0.14518  3.35575  2.78597  3.25510     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     42   2.93035  3.56282  0.11992  3.46492     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     43   0.14518  3.35575  2.78597  3.25510     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     44   3.40484  0.13363  3.45549  2.80837     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     45   3.40484  0.13363  3.45549  2.80837     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97913        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_twenty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:32:45 2012
+NSEQ  27
+EFFN  3.318970
+CKSUM 2413804547
+STATS LOCAL MSV       -8.3468  0.71933
+STATS LOCAL VITERBI   -7.8248  0.71933
+STATS LOCAL FORWARD   -4.3143  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27364  1.29205  1.44933  1.55706
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  0.00000        *
+      1   3.43174  0.13037  3.48126  2.82800      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+      2   0.14205  3.37907  2.80115  3.28062      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+      3   0.14205  3.37907  2.80115  3.28062      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+      4   3.43174  0.13037  3.48126  2.82800      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+      5   2.45577  0.67598  2.52814  1.12167      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+      6   0.14205  3.37907  2.80115  3.28062      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+      7   2.94670  3.58655  0.11729  3.49109      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+      8   3.08741  2.59438  3.13561  0.17887      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+      9   0.14205  3.37907  2.80115  3.28062      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     10   2.94670  3.58655  0.11729  3.49109     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     11   3.43174  0.13037  3.48126  2.82800     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     12   0.14205  3.37907  2.80115  3.28062     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     13   3.43174  0.13037  3.48126  2.82800     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     14   3.08741  2.59438  3.13561  0.17887     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     15   2.94670  3.58655  0.11729  3.49109     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     16   2.94670  3.58655  0.11729  3.49109     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     17   0.14205  3.37907  2.80115  3.28062     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     18   3.08741  2.59438  3.13561  0.17887     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     19   3.43174  0.13037  3.48126  2.82800     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     20   3.43174  0.13037  3.48126  2.82800     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     21   3.43174  0.13037  3.48126  2.82800     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     22   3.08741  2.59438  3.13561  0.17887     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     23   3.08741  2.59438  3.13561  0.17887     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     24   2.94670  3.58655  0.11729  3.49109     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     25   2.94670  3.58655  0.11729  3.49109     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     26   3.43174  0.13037  3.48126  2.82800     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     27   0.14205  3.37907  2.80115  3.28062     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     28   3.43174  0.13037  3.48126  2.82800     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     29   2.94670  3.58655  0.11729  3.49109     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     30   3.08741  2.59438  3.13561  0.17887     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     31   3.43174  0.13037  3.48126  2.82800     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     32   0.14205  3.37907  2.80115  3.28062     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     33   3.08741  2.59438  3.13561  0.17887     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     34   3.08741  2.59438  3.13561  0.17887     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     35   3.43174  0.13037  3.48126  2.82800     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     36   2.94670  3.58655  0.11729  3.49109     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     37   0.14205  3.37907  2.80115  3.28062     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     38   3.08741  2.59438  3.13561  0.17887     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     39   2.94670  3.58655  0.11729  3.49109     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     40   0.14205  3.37907  2.80115  3.28062     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     41   0.14205  3.37907  2.80115  3.28062     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     42   2.94670  3.58655  0.11729  3.49109     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     43   0.14205  3.37907  2.80115  3.28062     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     44   0.14205  3.37907  2.80115  3.28062     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     45   3.43174  0.13037  3.48126  2.82800     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01863  3.99249        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_twentyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:34:19 2012
+NSEQ  21
+EFFN  3.201782
+CKSUM 1658522092
+STATS LOCAL MSV       -8.0401  0.71932
+STATS LOCAL VITERBI   -7.6304  0.71932
+STATS LOCAL FORWARD   -3.8782  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22290  1.15288  1.61272  1.65781
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  0.00000        *
+      1   3.38754  0.13578  3.43891  2.79570      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+      2   0.14722  3.34076  2.77619  3.23872      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+      3   0.14722  3.34076  2.77619  3.23872      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+      4   3.38754  0.13578  3.43891  2.79570      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+      5   3.38754  0.13578  3.43891  2.79570      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+      6   0.14722  3.34076  2.77619  3.23872      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+      7   3.04891  2.56986  3.09858  0.18521      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+      8   3.38754  0.13578  3.43891  2.79570      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+      9   0.14722  3.34076  2.77619  3.23872      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     10   2.91977  3.54752  0.12166  3.44806     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     11   3.38754  0.13578  3.43891  2.79570     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     12   0.14722  3.34076  2.77619  3.23872     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     13   0.14722  3.34076  2.77619  3.23872     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     14   3.38754  0.13578  3.43891  2.79570     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     15   2.91977  3.54752  0.12166  3.44806     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     16   2.91977  3.54752  0.12166  3.44806     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     17   0.14722  3.34076  2.77619  3.23872     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     18   3.04891  2.56986  3.09858  0.18521     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     19   3.38754  0.13578  3.43891  2.79570     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     20   3.04891  2.56986  3.09858  0.18521     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     21   3.38754  0.13578  3.43891  2.79570     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     22   3.04891  2.56986  3.09858  0.18521     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     23   3.04891  2.56986  3.09858  0.18521     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     24   2.91977  3.54752  0.12166  3.44806     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     25   2.91977  3.54752  0.12166  3.44806     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     26   3.38754  0.13578  3.43891  2.79570     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     27   0.14722  3.34076  2.77619  3.23872     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     28   3.04891  2.56986  3.09858  0.18521     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     29   3.38754  0.13578  3.43891  2.79570     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     30   3.38754  0.13578  3.43891  2.79570     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     31   3.38754  0.13578  3.43891  2.79570     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     32   0.14722  3.34076  2.77619  3.23872     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     33   3.38754  0.13578  3.43891  2.79570     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     34   3.04891  2.56986  3.09858  0.18521     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     35   3.38754  0.13578  3.43891  2.79570     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     36   2.91977  3.54752  0.12166  3.44806     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     37   0.14722  3.34076  2.77619  3.23872     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     38   3.04891  2.56986  3.09858  0.18521     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     39   2.91977  3.54752  0.12166  3.44806     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     40   0.14722  3.34076  2.77619  3.23872     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     41   0.14722  3.34076  2.77619  3.23872     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     42   2.91977  3.54752  0.12166  3.44806     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     43   0.14722  3.34076  2.77619  3.23872     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     44   0.14722  3.34076  2.77619  3.23872     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98931  3.98931  1.46634  0.26236  1.09861  0.40547
+     45   3.38754  0.13578  3.43891  2.79570     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01904  3.97063        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_twentyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:33:46 2012
+NSEQ  50
+EFFN  3.213501
+CKSUM 2717834285
+STATS LOCAL MSV       -7.9933  0.71932
+STATS LOCAL VITERBI   -7.7017  0.71932
+STATS LOCAL FORWARD   -4.0693  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33855  1.32610  1.38194  1.50881
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  0.00000        *
+      1   3.39204  0.13522  3.44322  2.79900      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+      2   0.14669  3.34466  2.77874  3.24298      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+      3   0.14669  3.34466  2.77874  3.24298      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+      4   3.39204  0.13522  3.44322  2.79900      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+      5   3.39204  0.13522  3.44322  2.79900      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+      6   0.14669  3.34466  2.77874  3.24298      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+      7   0.14669  3.34466  2.77874  3.24298      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+      8   3.05282  2.57235  3.10233  0.18456      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+      9   2.92253  3.55151  0.12120  3.45245      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     10   0.14669  3.34466  2.77874  3.24298     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     11   3.39204  0.13522  3.44322  2.79900     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     12   2.92253  3.55151  0.12120  3.45245     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     13   3.05282  2.57235  3.10233  0.18456     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     14   3.05282  2.57235  3.10233  0.18456     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     15   2.92253  3.55151  0.12120  3.45245     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     16   2.92253  3.55151  0.12120  3.45245     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     17   0.14669  3.34466  2.77874  3.24298     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     18   3.05282  2.57235  3.10233  0.18456     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     19   3.39204  0.13522  3.44322  2.79900     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     20   3.39204  0.13522  3.44322  2.79900     20 - -
+          1.38629  1.38629  1.38629  1.38629
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+     21   3.39204  0.13522  3.44322  2.79900     21 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     23   3.05282  2.57235  3.10233  0.18456     23 - -
+          1.38629  1.38629  1.38629  1.38629
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+     24   2.92253  3.55151  0.12120  3.45245     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     25   2.92253  3.55151  0.12120  3.45245     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     26   3.39204  0.13522  3.44322  2.79900     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     27   0.14669  3.34466  2.77874  3.24298     27 - -
+          1.38629  1.38629  1.38629  1.38629
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+     28   3.05282  2.57235  3.10233  0.18456     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     29   2.92253  3.55151  0.12120  3.45245     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     30   3.39204  0.13522  3.44322  2.79900     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     31   3.39204  0.13522  3.44322  2.79900     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     32   3.05282  2.57235  3.10233  0.18456     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     33   2.92253  3.55151  0.12120  3.45245     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     34   0.14669  3.34466  2.77874  3.24298     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     35   3.05282  2.57235  3.10233  0.18456     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     36   3.39204  0.13522  3.44322  2.79900     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     37   2.92253  3.55151  0.12120  3.45245     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     38   0.14669  3.34466  2.77874  3.24298     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     39   3.05282  2.57235  3.10233  0.18456     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     40   2.92253  3.55151  0.12120  3.45245     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     41   0.14669  3.34466  2.77874  3.24298     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     42   0.14669  3.34466  2.77874  3.24298     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     43   2.92253  3.55151  0.12120  3.45245     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     44   0.14669  3.34466  2.77874  3.24298     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  1.09861  0.40547
+     45   3.39204  0.13522  3.44322  2.79900     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01900  3.97284        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_twentyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:33:38 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 39506437
+STATS LOCAL MSV       -7.7237  0.72769
+STATS LOCAL VITERBI   -8.1700  0.72769
+STATS LOCAL FORWARD   -3.4656  0.72769
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34588  1.19438  1.44025  1.60979
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
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+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_twentynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:34:28 2012
+NSEQ  201
+EFFN  3.333847
+CKSUM 1606966183
+STATS LOCAL MSV       -7.9954  0.71933
+STATS LOCAL VITERBI   -7.5713  0.71933
+STATS LOCAL FORWARD   -3.8460  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16898  1.20293  1.70580  1.57321
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  0.00000        *
+      1   3.01595  0.16788  3.26438  2.69825      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+      2   0.14142  3.38383  2.80424  3.28584      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+      3   0.14142  3.38383  2.80424  3.28584      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+      4   3.43722  0.12972  3.48651  2.83199      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+      5   3.09221  2.59743  3.14023  0.17810      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+      6   0.18889  3.14271  2.69687  2.78807      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+      7   3.09221  2.59743  3.14023  0.17810      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+      8   3.43722  0.12972  3.48651  2.83199      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+      9   0.14142  3.38383  2.80424  3.28584      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     10   0.14142  3.38383  2.80424  3.28584     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     11   3.43722  0.12972  3.48651  2.83199     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     12   0.14142  3.38383  2.80424  3.28584     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     13   0.14142  3.38383  2.80424  3.28584     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     14   3.43722  0.12972  3.48651  2.83199     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     15   2.95002  3.59138  0.11676  3.49642     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     16   2.95002  3.59138  0.11676  3.49642     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     17   0.14142  3.38383  2.80424  3.28584     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     18   3.09221  2.59743  3.14023  0.17810     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     19   3.43722  0.12972  3.48651  2.83199     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     20   3.09221  2.59743  3.14023  0.17810     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     21   3.43722  0.12972  3.48651  2.83199     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     22   3.09221  2.59743  3.14023  0.17810     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     23   3.09221  2.59743  3.14023  0.17810     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     24   2.95002  3.59138  0.11676  3.49642     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     25   2.95002  3.59138  0.11676  3.49642     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     26   3.43722  0.12972  3.48651  2.83199     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     27   0.14142  3.38383  2.80424  3.28584     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     28   3.09221  2.59743  3.14023  0.17810     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     29   3.43722  0.12972  3.48651  2.83199     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     30   3.43722  0.12972  3.48651  2.83199     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     31   3.43722  0.12972  3.48651  2.83199     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     32   0.19425  3.19767  2.40606  3.08956     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     33   3.43722  0.12972  3.48651  2.83199     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     34   3.09221  2.59743  3.14023  0.17810     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     35   3.43722  0.12972  3.48651  2.83199     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     36   2.84322  3.13754  0.15084  3.26008     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     37   0.14142  3.38383  2.80424  3.28584     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     38   3.09221  2.59743  3.14023  0.17810     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     39   2.95002  3.59138  0.11676  3.49642     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     40   0.14142  3.38383  2.80424  3.28584     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     41   0.14142  3.38383  2.80424  3.28584     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     42   2.84322  3.13754  0.15084  3.26008     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     43   0.14142  3.38383  2.80424  3.28584     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     44   0.14142  3.38383  2.80424  3.28584     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03681  4.01347  4.01347  1.46634  0.26236  1.09861  0.40547
+     45   3.43722  0.12972  3.48651  2.83199     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01857  3.99523        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_twentyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:32:52 2012
+NSEQ  6
+EFFN  3.190430
+CKSUM 2584526133
+STATS LOCAL MSV       -8.2534  0.71932
+STATS LOCAL VITERBI   -7.8632  0.71932
+STATS LOCAL FORWARD   -4.3290  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33987  1.26667  1.38267  1.58258
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  0.00000        *
+      1   3.38316  0.13633  3.43471  2.79249      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+      2   0.14775  3.33697  2.77371  3.23457      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+      3   0.14775  3.33697  2.77371  3.23457      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+      4   3.38316  0.13633  3.43471  2.79249      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+      5   3.38316  0.13633  3.43471  2.79249      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+      6   0.14775  3.33697  2.77371  3.23457      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+      7   2.91709  3.54364  0.12210  3.44379      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+      8   3.04512  2.56744  3.09493  0.18585      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+      9   2.91709  3.54364  0.12210  3.44379      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     10   2.91709  3.54364  0.12210  3.44379     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     11   3.38316  0.13633  3.43471  2.79249     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     12   0.14775  3.33697  2.77371  3.23457     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     13   3.38316  0.13633  3.43471  2.79249     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     14   3.04512  2.56744  3.09493  0.18585     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     15   2.91709  3.54364  0.12210  3.44379     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     16   2.91709  3.54364  0.12210  3.44379     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     17   0.14775  3.33697  2.77371  3.23457     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     18   3.04512  2.56744  3.09493  0.18585     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     19   3.38316  0.13633  3.43471  2.79249     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     20   3.38316  0.13633  3.43471  2.79249     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     21   3.38316  0.13633  3.43471  2.79249     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     22   3.04512  2.56744  3.09493  0.18585     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     23   3.04512  2.56744  3.09493  0.18585     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     24   2.91709  3.54364  0.12210  3.44379     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     25   2.91709  3.54364  0.12210  3.44379     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     26   3.38316  0.13633  3.43471  2.79249     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     27   0.14775  3.33697  2.77371  3.23457     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     28   3.38316  0.13633  3.43471  2.79249     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     29   2.91709  3.54364  0.12210  3.44379     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     30   3.04512  2.56744  3.09493  0.18585     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     31   3.38316  0.13633  3.43471  2.79249     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     32   0.14775  3.33697  2.77371  3.23457     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     33   3.04512  2.56744  3.09493  0.18585     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     34   3.04512  2.56744  3.09493  0.18585     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     35   3.38316  0.13633  3.43471  2.79249     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     36   2.91709  3.54364  0.12210  3.44379     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     37   0.14775  3.33697  2.77371  3.23457     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     38   3.04512  2.56744  3.09493  0.18585     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     39   2.91709  3.54364  0.12210  3.44379     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     40   0.14775  3.33697  2.77371  3.23457     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     41   0.14775  3.33697  2.77371  3.23457     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     42   2.91709  3.54364  0.12210  3.44379     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     43   0.14775  3.33697  2.77371  3.23457     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     44   0.14775  3.33697  2.77371  3.23457     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     45   3.38316  0.13633  3.43471  2.79249     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01908  3.96848        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_twentyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:34:08 2012
+NSEQ  134
+EFFN  3.275574
+CKSUM 1945163550
+STATS LOCAL MSV       -7.9950  0.71931
+STATS LOCAL VITERBI   -7.5252  0.71931
+STATS LOCAL FORWARD   -3.9566  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16367  1.25866  1.60846  1.59241
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  0.00000        *
+      1   3.41558  0.13232  3.46578  2.81622      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+      2   0.14392  3.36506  2.79204  3.26529      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+      3   0.14392  3.36506  2.79204  3.26529      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+      4   3.41558  0.13232  3.46578  2.81622      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+      5   3.41558  0.13232  3.46578  2.81622      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+      6   0.14392  3.36506  2.79204  3.26529      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+      7   3.07329  2.58539  3.12203  0.18117      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+      8   3.41558  0.13232  3.46578  2.81622      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+      9   0.14392  3.36506  2.79204  3.26529      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     10   2.93689  3.57231  0.11886  3.47538     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     11   3.41558  0.13232  3.46578  2.81622     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     12   0.14392  3.36506  2.79204  3.26529     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     13   0.14392  3.36506  2.79204  3.26529     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     14   3.41558  0.13232  3.46578  2.81622     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     15   2.93689  3.57231  0.11886  3.47538     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     16   2.93689  3.57231  0.11886  3.47538     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     17   0.14392  3.36506  2.79204  3.26529     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     18   3.07329  2.58539  3.12203  0.18117     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     19   3.41558  0.13232  3.46578  2.81622     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     20   3.07329  2.58539  3.12203  0.18117     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     21   3.41558  0.13232  3.46578  2.81622     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     22   3.07329  2.58539  3.12203  0.18117     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     23   3.07329  2.58539  3.12203  0.18117     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     24   2.93689  3.57231  0.11886  3.47538     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     25   2.93689  3.57231  0.11886  3.47538     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     26   3.41558  0.13232  3.46578  2.81622     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     27   0.14392  3.36506  2.79204  3.26529     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     28   3.07329  2.58539  3.12203  0.18117     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     29   2.75140  1.89152  2.81170  0.32129     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     30   3.41558  0.13232  3.46578  2.81622     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     31   3.41558  0.13232  3.46578  2.81622     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     32   0.14392  3.36506  2.79204  3.26529     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     33   0.14392  3.36506  2.79204  3.26529     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     34   3.07329  2.58539  3.12203  0.18117     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     35   3.41558  0.13232  3.46578  2.81622     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     36   2.93689  3.57231  0.11886  3.47538     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     37   0.14392  3.36506  2.79204  3.26529     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     38   3.07329  2.58539  3.12203  0.18117     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     39   2.93689  3.57231  0.11886  3.47538     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     40   0.14392  3.36506  2.79204  3.26529     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     41   0.14392  3.36506  2.79204  3.26529     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     42   2.93689  3.57231  0.11886  3.47538     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     43   0.14392  3.36506  2.79204  3.26529     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     44   0.14392  3.36506  2.79204  3.26529     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     45   3.41558  0.13232  3.46578  2.81622     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01878  3.98445        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_twentysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:33:59 2012
+NSEQ  138
+EFFN  3.373352
+CKSUM 394397067
+STATS LOCAL MSV       -7.3325  0.71932
+STATS LOCAL VITERBI   -7.5786  0.71932
+STATS LOCAL FORWARD   -3.9181  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45043  1.37995  1.21600  1.52544
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  0.00000        *
+      1   3.45164  0.12802  3.50031  2.84247      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+      2   0.13979  3.39635  2.81236  3.29954      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+      3   0.13979  3.39635  2.81236  3.29954      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+      4   3.45164  0.12802  3.50031  2.84247      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+      5   3.10488  2.60548  3.15241  0.17608      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+      6   2.95872  3.60405  0.11539  3.51042      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+      7   2.95872  3.60405  0.11539  3.51042      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+      8   3.10488  2.60548  3.15241  0.17608      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+      9   0.13979  3.39635  2.81236  3.29954      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     10   2.95872  3.60405  0.11539  3.51042     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     11   3.45164  0.12802  3.50031  2.84247     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     12   2.95872  3.60405  0.11539  3.51042     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     13   3.10488  2.60548  3.15241  0.17608     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     14   2.61637  1.58066  2.68147  0.42674     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     15   2.95872  3.60405  0.11539  3.51042     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     16   2.95872  3.60405  0.11539  3.51042     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     17   0.13979  3.39635  2.81236  3.29954     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     18   3.10488  2.60548  3.15241  0.17608     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     19   3.45164  0.12802  3.50031  2.84247     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     20   3.45164  0.12802  3.50031  2.84247     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     21   3.45164  0.12802  3.50031  2.84247     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     22   3.10488  2.60548  3.15241  0.17608     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     23   3.45164  0.12802  3.50031  2.84247     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     24   2.95872  3.60405  0.11539  3.51042     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     25   2.95872  3.60405  0.11539  3.51042     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     26   3.45164  0.12802  3.50031  2.84247     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     27   0.13979  3.39635  2.81236  3.29954     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     28   3.10488  2.60548  3.15241  0.17608     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     29   2.95872  3.60405  0.11539  3.51042     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     30   2.95872  3.60405  0.11539  3.51042     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     31   3.45164  0.12802  3.50031  2.84247     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     32   3.10488  2.60548  3.15241  0.17608     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     33   0.13979  3.39635  2.81236  3.29954     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     34   3.10488  2.60548  3.15241  0.17608     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     35   3.45164  0.12802  3.50031  2.84247     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     36   2.95872  3.60405  0.11539  3.51042     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     37   0.13979  3.39635  2.81236  3.29954     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     38   3.10488  2.60548  3.15241  0.17608     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     39   2.95872  3.60405  0.11539  3.51042     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     40   0.13979  3.39635  2.81236  3.29954     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     41   0.13979  3.39635  2.81236  3.29954     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     42   2.95872  3.60405  0.11539  3.51042     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     43   0.13979  3.39635  2.81236  3.29954     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     44   1.24519  2.61558  0.58949  2.47243     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02058  4.02058  1.46634  0.26236  1.09861  0.40547
+     45   3.45164  0.12802  3.50031  2.84247     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01844  4.00248        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_twentythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:33:27 2012
+NSEQ  5
+EFFN  3.217773
+CKSUM 2341168831
+STATS LOCAL MSV       -8.1703  0.71930
+STATS LOCAL VITERBI   -7.8329  0.71930
+STATS LOCAL FORWARD   -4.2772  0.71930
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33869  1.32607  1.38181  1.50883
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  0.00000        *
+      1   3.39368  0.13501  3.44479  2.80020      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      2   0.14649  3.34608  2.77966  3.24453      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      3   0.14649  3.34608  2.77966  3.24453      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      4   3.39368  0.13501  3.44479  2.80020      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      5   3.39368  0.13501  3.44479  2.80020      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      6   0.14649  3.34608  2.77966  3.24453      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      7   2.92353  3.55295  0.12104  3.45404      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      8   3.05424  2.57325  3.10370  0.18432      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      9   0.14649  3.34608  2.77966  3.24453      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     10   2.92353  3.55295  0.12104  3.45404     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     11   3.39368  0.13501  3.44479  2.80020     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     12   2.92353  3.55295  0.12104  3.45404     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     13   3.05424  2.57325  3.10370  0.18432     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     14   3.05424  2.57325  3.10370  0.18432     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     15   2.92353  3.55295  0.12104  3.45404     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     16   2.92353  3.55295  0.12104  3.45404     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     17   0.14649  3.34608  2.77966  3.24453     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     18   3.05424  2.57325  3.10370  0.18432     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     19   3.39368  0.13501  3.44479  2.80020     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     20   3.39368  0.13501  3.44479  2.80020     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     21   3.39368  0.13501  3.44479  2.80020     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     22   3.05424  2.57325  3.10370  0.18432     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     23   3.05424  2.57325  3.10370  0.18432     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     24   2.92353  3.55295  0.12104  3.45404     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     25   2.92353  3.55295  0.12104  3.45404     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     26   3.39368  0.13501  3.44479  2.80020     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     27   0.14649  3.34608  2.77966  3.24453     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     28   3.39368  0.13501  3.44479  2.80020     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     29   2.92353  3.55295  0.12104  3.45404     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     30   3.05424  2.57325  3.10370  0.18432     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     31   3.39368  0.13501  3.44479  2.80020     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     32   0.14649  3.34608  2.77966  3.24453     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     33   3.05424  2.57325  3.10370  0.18432     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     34   3.05424  2.57325  3.10370  0.18432     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     35   3.39368  0.13501  3.44479  2.80020     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     36   2.92353  3.55295  0.12104  3.45404     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     37   0.14649  3.34608  2.77966  3.24453     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     38   3.05424  2.57325  3.10370  0.18432     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     39   2.92353  3.55295  0.12104  3.45404     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     40   0.14649  3.34608  2.77966  3.24453     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     41   0.14649  3.34608  2.77966  3.24453     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     42   2.92353  3.55295  0.12104  3.45404     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     43   0.14649  3.34608  2.77966  3.24453     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     44   0.14649  3.34608  2.77966  3.24453     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     45   3.39368  0.13501  3.44479  2.80020     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01898  3.97364        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_twentytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:32:59 2012
+NSEQ  33
+EFFN  3.226685
+CKSUM 2560356789
+STATS LOCAL MSV       -8.2782  0.71932
+STATS LOCAL VITERBI   -7.8334  0.71932
+STATS LOCAL FORWARD   -4.3141  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27722  1.32550  1.45154  1.50820
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  0.00000        *
+      1   3.39708  0.13459  3.44806  2.80270      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+      2   0.14609  3.34903  2.78159  3.24776      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+      3   0.14609  3.34903  2.78159  3.24776      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+      4   3.39708  0.13459  3.44806  2.80270      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+      5   3.39708  0.13459  3.44806  2.80270      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+      6   0.14609  3.34903  2.78159  3.24776      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+      7   2.92562  3.55597  0.12070  3.45736      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+      8   3.05719  2.57514  3.10654  0.18382      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+      9   0.14609  3.34903  2.78159  3.24776      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     10   2.92562  3.55597  0.12070  3.45736     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     11   3.39708  0.13459  3.44806  2.80270     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     12   0.14609  3.34903  2.78159  3.24776     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     13   3.05719  2.57514  3.10654  0.18382     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     14   3.05719  2.57514  3.10654  0.18382     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     15   2.92562  3.55597  0.12070  3.45736     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     16   2.92562  3.55597  0.12070  3.45736     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     17   0.14609  3.34903  2.78159  3.24776     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     18   3.05719  2.57514  3.10654  0.18382     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     19   3.39708  0.13459  3.44806  2.80270     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     20   3.39708  0.13459  3.44806  2.80270     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     21   3.39708  0.13459  3.44806  2.80270     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     22   3.05719  2.57514  3.10654  0.18382     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     23   3.05719  2.57514  3.10654  0.18382     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     24   2.92562  3.55597  0.12070  3.45736     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     25   2.92562  3.55597  0.12070  3.45736     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     26   3.39708  0.13459  3.44806  2.80270     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     27   0.14609  3.34903  2.78159  3.24776     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     28   3.39708  0.13459  3.44806  2.80270     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     29   2.92562  3.55597  0.12070  3.45736     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     30   3.05719  2.57514  3.10654  0.18382     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     31   3.39708  0.13459  3.44806  2.80270     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     32   0.14609  3.34903  2.78159  3.24776     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     33   3.05719  2.57514  3.10654  0.18382     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     34   3.05719  2.57514  3.10654  0.18382     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     35   3.39708  0.13459  3.44806  2.80270     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     36   2.92562  3.55597  0.12070  3.45736     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     37   0.14609  3.34903  2.78159  3.24776     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     38   3.05719  2.57514  3.10654  0.18382     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     39   2.92562  3.55597  0.12070  3.45736     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     40   0.14609  3.34903  2.78159  3.24776     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     41   0.14609  3.34903  2.78159  3.24776     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     42   2.92562  3.55597  0.12070  3.45736     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     43   0.14609  3.34903  2.78159  3.24776     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     44   0.14609  3.34903  2.78159  3.24776     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     45   3.39708  0.13459  3.44806  2.80270     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01895  3.97531        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Tu_58S_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb  8 10:29:57 2012
+NSEQ  247
+EFFN  3.147049
+CKSUM 4292221496
+STATS LOCAL MSV       -7.9808  0.71934
+STATS LOCAL VITERBI   -7.7697  0.71934
+STATS LOCAL FORWARD   -4.1501  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47801  1.15573  1.32077  1.65994
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  0.00000        *
+      1   3.36626  0.13847  3.41850  2.78007      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+      2   0.14979  3.32235  2.76414  3.21859      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+      3   0.14979  3.32235  2.76414  3.21859      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+      4   3.36626  0.13847  3.41850  2.78007      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+      5   3.36626  0.13847  3.41850  2.78007      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+      6   2.90669  3.52866  0.12384  3.42729      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+      7   2.90669  3.52866  0.12384  3.42729      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+      8   3.36626  0.13847  3.41850  2.78007      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+      9   0.14979  3.32235  2.76414  3.21859      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     10   2.90669  3.52866  0.12384  3.42729     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     11   3.36626  0.13847  3.41850  2.78007     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     12   2.90669  3.52866  0.12384  3.42729     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     13   3.36626  0.13847  3.41850  2.78007     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     14   3.03052  2.55812  3.08088  0.18833     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     15   2.90669  3.52866  0.12384  3.42729     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     16   2.90669  3.52866  0.12384  3.42729     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     17   0.14979  3.32235  2.76414  3.21859     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     18   3.03052  2.55812  3.08088  0.18833     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     19   3.36626  0.13847  3.41850  2.78007     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     20   3.36626  0.13847  3.41850  2.78007     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     21   3.36626  0.13847  3.41850  2.78007     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     22   3.03052  2.55812  3.08088  0.18833     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     23   3.03052  2.55812  3.08088  0.18833     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     24   2.90669  3.52866  0.12384  3.42729     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     25   2.90669  3.52866  0.12384  3.42729     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     26   3.36626  0.13847  3.41850  2.78007     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     27   0.14979  3.32235  2.76414  3.21859     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     28   3.36626  0.13847  3.41850  2.78007     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     29   2.90669  3.52866  0.12384  3.42729     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     30   3.03052  2.55812  3.08088  0.18833     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     31   3.36626  0.13847  3.41850  2.78007     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     32   0.14979  3.32235  2.76414  3.21859     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     33   3.03052  2.55812  3.08088  0.18833     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     34   3.03052  2.55812  3.08088  0.18833     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     35   3.36626  0.13847  3.41850  2.78007     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     36   2.90669  3.52866  0.12384  3.42729     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     37   0.14979  3.32235  2.76414  3.21859     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     38   3.03052  2.55812  3.08088  0.18833     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     39   2.90669  3.52866  0.12384  3.42729     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     40   0.14979  3.32235  2.76414  3.21859     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     41   0.14979  3.32235  2.76414  3.21859     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     42   2.90669  3.52866  0.12384  3.42729     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     43   0.14979  3.32235  2.76414  3.21859     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     44   3.36626  0.13847  3.41850  2.78007     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03812  3.97913  3.97913  1.46634  0.26236  1.09861  0.40547
+     45   3.36626  0.13847  3.41850  2.78007     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01924  3.96025        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Ge_58S_start_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 15 22:33:39 2012
+NSEQ  8
+EFFN  3.277344
+CKSUM 2911135073
+STATS LOCAL MSV       -7.9182  0.71934
+STATS LOCAL VITERBI   -7.6223  0.71934
+STATS LOCAL FORWARD   -3.8796  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16429  1.32295  1.69932  1.43256
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  0.00000        *
+      1   3.07387  2.58576  3.12259  0.18107      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      2   0.14384  3.36564  2.79241  3.26592      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      3   0.14384  3.36564  2.79241  3.26592      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      4   3.41625  0.13224  3.46642  2.81671      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      5   3.07387  2.58576  3.12259  0.18107      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      6   0.14384  3.36564  2.79241  3.26592      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      7   3.07387  2.58576  3.12259  0.18107      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      8   3.41625  0.13224  3.46642  2.81671      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      9   0.14384  3.36564  2.79241  3.26592      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     10   0.14384  3.36564  2.79241  3.26592     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     11   3.41625  0.13224  3.46642  2.81671     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     12   0.14384  3.36564  2.79241  3.26592     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     13   0.14384  3.36564  2.79241  3.26592     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     14   3.41625  0.13224  3.46642  2.81671     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     15   2.93730  3.57289  0.11880  3.47603     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     16   2.93730  3.57289  0.11880  3.47603     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     17   0.14384  3.36564  2.79241  3.26592     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     18   3.07387  2.58576  3.12259  0.18107     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     19   3.41625  0.13224  3.46642  2.81671     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     20   3.07387  2.58576  3.12259  0.18107     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     21   3.41625  0.13224  3.46642  2.81671     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     22   3.07387  2.58576  3.12259  0.18107     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     23   3.07387  2.58576  3.12259  0.18107     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     24   2.93730  3.57289  0.11880  3.47603     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     25   2.93730  3.57289  0.11880  3.47603     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     26   3.41625  0.13224  3.46642  2.81671     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     27   3.07387  2.58576  3.12259  0.18107     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     28   3.41625  0.13224  3.46642  2.81671     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     29   3.07387  2.58576  3.12259  0.18107     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     30   3.41625  0.13224  3.46642  2.81671     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     31   0.14384  3.36564  2.79241  3.26592     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     32   3.41625  0.13224  3.46642  2.81671     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     33   0.14384  3.36564  2.79241  3.26592     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     34   3.07387  2.58576  3.12259  0.18107     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     35   3.41625  0.13224  3.46642  2.81671     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     36   2.93730  3.57289  0.11880  3.47603     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     37   0.14384  3.36564  2.79241  3.26592     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     38   3.07387  2.58576  3.12259  0.18107     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     39   2.93730  3.57289  0.11880  3.47603     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     40   0.14384  3.36564  2.79241  3.26592     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     41   0.14384  3.36564  2.79241  3.26592     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     42   2.93730  3.57289  0.11880  3.47603     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     43   0.14384  3.36564  2.79241  3.26592     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     44   0.14384  3.36564  2.79241  3.26592     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     45   3.41625  0.13224  3.46642  2.81671     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01877  3.98478        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Ge_58S_start_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 15 22:33:32 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1599797913
+STATS LOCAL MSV       -8.0270  0.72040
+STATS LOCAL VITERBI   -7.6903  0.72040
+STATS LOCAL FORWARD   -4.1473  0.72040
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40629  1.25924  1.52853  1.36954
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   3.30705  0.14631  3.36166  2.73626     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   3.30705  0.14631  3.36166  2.73626     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Ge_58S_start_onea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 15 22:32:04 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3192173373
+STATS LOCAL MSV       -7.4790  0.72785
+STATS LOCAL VITERBI   -8.2285  0.72785
+STATS LOCAL FORWARD   -3.6683  0.72785
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34212  1.34481  1.37550  1.48984
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Ge_58S_start_oneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 15 22:32:13 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 911593098
+STATS LOCAL MSV       -7.5503  0.72837
+STATS LOCAL VITERBI   -8.2240  0.72837
+STATS LOCAL FORWARD   -3.5417  0.72837
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.24193  1.23206  1.72557  1.42126
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Ge_58S_start_onec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 15 22:32:19 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1106141846
+STATS LOCAL MSV       -7.9458  0.72046
+STATS LOCAL VITERBI   -7.6852  0.72046
+STATS LOCAL FORWARD   -4.0384  0.72046
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21793  1.45865  1.51983  1.37493
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
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+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
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+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
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+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Ge_58S_start_oned_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 15 22:32:26 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2126945751
+STATS LOCAL MSV       -8.0504  0.72131
+STATS LOCAL VITERBI   -7.6798  0.72131
+STATS LOCAL FORWARD   -4.1485  0.72131
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39162  1.44694  1.35968  1.34979
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.42796  0.63000  2.50086  1.21343      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
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+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.10429  0.72298  1.37213  1.97185     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Ge_58S_start_onee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 15 22:32:35 2012
+NSEQ  6018
+EFFN  6.184001
+CKSUM 1119134815
+STATS LOCAL MSV       -7.1036  0.71932
+STATS LOCAL VITERBI   -7.4586  0.71932
+STATS LOCAL FORWARD   -4.0710  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23079  1.39059  1.57755  1.37624
+          1.38629  1.38629  1.38629  1.38629
+          0.02422  4.42892  4.42282  1.46634  0.26236  0.00000        *
+      1   0.94227  1.03147  2.27275  1.89215      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02415  4.42885  4.42885  1.46634  0.26236  1.09455  0.40750
+      2   0.14717  3.27665  2.96834  3.04257      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02419  4.42892  4.42496  1.46634  0.26236  1.09861  0.40547
+      3   0.10782  3.54479  3.07668  3.60374      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02418  4.42887  4.42574  1.46634  0.26236  1.09597  0.40679
+      4   3.69894  0.10439  3.73717  2.98470      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02414  4.42888  4.42888  1.46634  0.26236  1.09653  0.40651
+      5   3.35759  2.80340  3.37656  0.13879      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02414  4.42892  4.42892  1.46634  0.26236  1.09861  0.40547
+      6   3.18581  2.61406  3.38315  0.16078      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02450  4.42892  4.40045  1.46634  0.26236  1.09861  0.40547
+      7   3.29770  2.88721  3.45196  0.13283      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02419  4.42858  4.42545  1.46634  0.26236  1.07972  0.41505
+      8   3.23722  0.22401  3.27713  2.09005      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02414  4.42888  4.42888  1.46634  0.26236  1.09653  0.40651
+      9   0.16480  3.44443  2.46488  3.35255      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02429  4.42892  4.41705  1.46634  0.26236  1.09861  0.40547
+     10   0.28772  3.05690  1.83107  3.15229     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02534  4.42878  4.33573  1.46634  0.26236  1.09071  0.40944
+     11   3.82045  0.09350  3.74522  3.13002     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02417  4.42776  4.42776  1.46634  0.26236  1.03755  0.43745
+     12   0.11356  3.69835  2.91908  3.55415     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02639  4.42892  4.26065  1.46634  0.26236  1.09861  0.40547
+     13   0.10720  3.84261  3.00467  3.48487     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02424  4.42673  4.42361  1.46634  0.26236  0.98964  0.46476
+     14   3.09893  0.22916  3.27576  2.10448     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02418  4.42888  4.42586  1.46634  0.26236  1.09653  0.40651
+     15   3.17005  3.73216  0.08804  3.99922     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02418  4.42888  4.42576  1.46634  0.26236  1.09660  0.40648
+     16   3.15207  3.78967  0.09088  3.83959     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02414  4.42888  4.42888  1.46634  0.26236  1.09653  0.40651
+     17   0.09551  3.91028  3.09045  3.66628     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02433  4.42892  4.41399  1.46634  0.26236  1.09861  0.40547
+     18   3.48256  2.77559  3.66172  0.12639     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02419  4.42874  4.42561  1.46634  0.26236  1.08868  0.41047
+     19   3.17442  0.14425  3.55538  2.74976     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02418  4.42888  4.42577  1.46634  0.26236  1.09653  0.40651
+     20   3.46629  2.88566  3.67967  0.11910     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02414  4.42888  4.42888  1.46634  0.26236  1.09654  0.40650
+     21   3.61797  0.11401  3.69446  2.88138     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02418  4.42892  4.42581  1.46634  0.26236  1.09861  0.40547
+     22   3.48971  2.80145  3.66913  0.12412     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02419  4.42888  4.42491  1.46634  0.26236  1.09654  0.40650
+     23   2.75305  2.73446  3.26658  0.18248     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02414  4.42887  4.42887  1.46634  0.26236  1.09596  0.40679
+     24   3.23668  3.93489  0.07904  4.06571     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02414  4.42892  4.42892  1.46634  0.26236  1.09861  0.40547
+     25   3.15424  3.87025  0.08475  4.03215     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02428  4.42892  4.41767  1.46634  0.26236  1.09861  0.40547
+     26   2.39058  0.90694  2.54271  0.85329     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02420  4.42879  4.42481  1.46634  0.26236  1.09113  0.40923
+     27   3.21157  2.86165  3.59944  0.13331     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02414  4.42887  4.42887  1.46634  0.26236  1.09596  0.40679
+     28   3.42425  0.11728  3.70705  2.92738     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02414  4.42892  4.42892  1.46634  0.26236  1.09861  0.40547
+     29   2.89824  2.20340  3.09878  0.23655     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02502  4.42892  4.35974  1.46634  0.26236  1.09861  0.40547
+     30   2.03126  0.90966  1.13505  1.93264     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02416  4.42807  4.42807  1.46634  0.26236  1.05302  0.42906
+     31   2.93856  3.30192  0.12692  3.52537     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02422  4.42892  4.42279  1.46634  0.26236  1.09861  0.40547
+     32   3.92271  0.10120  3.75675  2.93558     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02415  4.42885  4.42885  1.46634  0.26236  1.09453  0.40751
+     33   0.11569  3.61932  3.04777  3.35301     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02414  4.42892  4.42892  1.46634  0.26236  1.09861  0.40547
+     34   2.45890  2.71201  3.11641  0.21846     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02414  4.42892  4.42892  1.46634  0.26236  1.09861  0.40547
+     35   3.36876  0.10977  3.86071  3.02674     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02419  4.42892  4.42491  1.46634  0.26236  1.09861  0.40547
+     36   3.05007  3.71093  0.09961  3.77215     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02421  4.42887  4.42376  1.46634  0.26236  1.09594  0.40680
+     37   0.11783  3.77776  2.97177  3.29513     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02415  4.42886  4.42886  1.46634  0.26236  1.09521  0.40717
+     38   3.00761  2.79065  3.37334  0.15673     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02536  4.42892  4.33381  1.46634  0.26236  1.09861  0.40547
+     39   3.16336  3.77425  0.08709  4.00803     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02629  4.42773  4.26802  1.46634  0.26236  1.03622  0.43818
+     40   0.10498  3.84654  3.06725  3.44966     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02419  4.42685  4.42685  1.46634  0.26236  0.99502  0.46159
+     41   0.10244  3.67990  3.08870  3.62754     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02594  4.42892  4.29199  1.46634  0.26236  1.09861  0.40547
+     42   3.01635  3.71212  0.10278  3.71873     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02419  4.42717  4.42717  1.46634  0.26236  1.00944  0.45322
+     43   0.10471  3.70280  3.02235  3.64687     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02414  4.42892  4.42892  1.46634  0.26236  1.09861  0.40547
+     44   0.10299  3.67108  2.98308  3.82684     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02420  4.42892  4.42432  1.46634  0.26236  1.09861  0.40547
+     45   3.51745  0.10570  3.63606  3.11731     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01215  4.41687        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Ge_58S_start_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 15 22:33:58 2012
+NSEQ  6
+EFFN  3.424805
+CKSUM 568992662
+STATS LOCAL MSV       -7.6707  0.71932
+STATS LOCAL VITERBI   -7.7202  0.71932
+STATS LOCAL FORWARD   -4.1086  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.32515  1.69650  1.46106  1.14281
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  0.00000        *
+      1   0.13772  3.41241  2.82276  3.31713      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+      2   0.13772  3.41241  2.82276  3.31713      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+      3   0.13772  3.41241  2.82276  3.31713      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+      4   3.12118  2.61584  3.16808  0.17352      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+      5   3.12118  2.61584  3.16808  0.17352      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+      6   3.12118  2.61584  3.16808  0.17352      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+      7   3.12118  2.61584  3.16808  0.17352      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+      8   3.47011  0.12588  3.51799  2.85586      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+      9   0.13772  3.41241  2.82276  3.31713      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     10   0.13772  3.41241  2.82276  3.31713     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     11   3.12118  2.61584  3.16808  0.17352     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     12   3.12118  2.61584  3.16808  0.17352     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     13   2.00150  3.06582  0.26731  2.94087     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     14   3.12118  2.61584  3.16808  0.17352     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     15   2.96982  3.62027  0.11366  3.52834     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     16   2.96982  3.62027  0.11366  3.52834     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     17   0.13772  3.41241  2.82276  3.31713     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     18   3.12118  2.61584  3.16808  0.17352     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     19   3.47011  0.12588  3.51799  2.85586     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     20   3.12118  2.61584  3.16808  0.17352     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     21   3.47011  0.12588  3.51799  2.85586     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     22   3.12118  2.61584  3.16808  0.17352     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     23   3.12118  2.61584  3.16808  0.17352     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     24   2.96982  3.62027  0.11366  3.52834     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     25   2.96982  3.62027  0.11366  3.52834     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     26   3.12118  2.61584  3.16808  0.17352     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     27   3.12118  2.61584  3.16808  0.17352     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     28   3.47011  0.12588  3.51799  2.85586     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     29   3.12118  2.61584  3.16808  0.17352     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     30   2.96982  3.62027  0.11366  3.52834     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     31   2.96982  3.62027  0.11366  3.52834     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     32   3.47011  0.12588  3.51799  2.85586     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     33   0.13772  3.41241  2.82276  3.31713     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     34   3.12118  2.61584  3.16808  0.17352     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     35   3.47011  0.12588  3.51799  2.85586     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     36   2.96982  3.62027  0.11366  3.52834     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     37   0.13772  3.41241  2.82276  3.31713     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     38   3.12118  2.61584  3.16808  0.17352     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     39   2.96982  3.62027  0.11366  3.52834     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     40   0.13772  3.41241  2.82276  3.31713     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     41   0.13772  3.41241  2.82276  3.31713     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     42   2.96982  3.62027  0.11366  3.52834     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     43   0.13772  3.41241  2.82276  3.31713     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     44   0.13772  3.41241  2.82276  3.31713     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     45   3.47011  0.12588  3.51799  2.85586     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01827  4.01183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Ge_58S_start_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 15 22:33:50 2012
+NSEQ  4
+EFFN  3.238281
+CKSUM 2127522718
+STATS LOCAL MSV       -8.1444  0.71932
+STATS LOCAL VITERBI   -7.6531  0.71932
+STATS LOCAL FORWARD   -4.2153  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40776  1.25902  1.45586  1.43475
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  0.00000        *
+      1   3.40150  0.13404  3.45229  2.80593      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      2   0.14557  3.35286  2.78409  3.25194      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      3   3.40150  0.13404  3.45229  2.80593      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      4   3.40150  0.13404  3.45229  2.80593      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      5   3.06103  2.57758  3.11024  0.18319      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      6   3.06103  2.57758  3.11024  0.18319      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      7   2.92831  3.55987  0.12026  3.46167      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      8   3.40150  0.13404  3.45229  2.80593      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      9   3.06103  2.57758  3.11024  0.18319      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     10   2.92831  3.55987  0.12026  3.46167     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     11   3.40150  0.13404  3.45229  2.80593     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     12   0.14557  3.35286  2.78409  3.25194     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     13   0.14557  3.35286  2.78409  3.25194     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     14   3.06103  2.57758  3.11024  0.18319     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     15   2.92831  3.55987  0.12026  3.46167     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     16   2.92831  3.55987  0.12026  3.46167     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     17   0.14557  3.35286  2.78409  3.25194     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     18   3.06103  2.57758  3.11024  0.18319     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     19   3.40150  0.13404  3.45229  2.80593     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     20   3.06103  2.57758  3.11024  0.18319     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     21   3.40150  0.13404  3.45229  2.80593     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     22   3.06103  2.57758  3.11024  0.18319     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     23   3.40150  0.13404  3.45229  2.80593     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     24   2.92831  3.55987  0.12026  3.46167     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     25   2.92831  3.55987  0.12026  3.46167     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     26   3.40150  0.13404  3.45229  2.80593     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     27   3.06103  2.57758  3.11024  0.18319     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     28   3.40150  0.13404  3.45229  2.80593     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     29   3.06103  2.57758  3.11024  0.18319     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     30   3.06103  2.57758  3.11024  0.18319     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     31   2.92831  3.55987  0.12026  3.46167     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     32   3.40150  0.13404  3.45229  2.80593     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     33   0.14557  3.35286  2.78409  3.25194     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     34   3.06103  2.57758  3.11024  0.18319     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     35   3.40150  0.13404  3.45229  2.80593     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     36   2.92831  3.55987  0.12026  3.46167     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     37   0.14557  3.35286  2.78409  3.25194     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     38   0.14557  3.35286  2.78409  3.25194     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     39   2.92831  3.55987  0.12026  3.46167     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     40   0.14557  3.35286  2.78409  3.25194     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     41   0.14557  3.35286  2.78409  3.25194     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     42   2.92831  3.55987  0.12026  3.46167     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     43   0.14557  3.35286  2.78409  3.25194     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     44   0.14557  3.35286  2.78409  3.25194     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     45   3.40150  0.13404  3.45229  2.80593     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01891  3.97749        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Ge_58S_start_threea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 15 22:33:00 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 4260290841
+STATS LOCAL MSV       -8.0950  0.72078
+STATS LOCAL VITERBI   -7.6606  0.72078
+STATS LOCAL FORWARD   -3.7616  0.72078
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27571  1.34946  1.51972  1.41628
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.43223  0.62271  2.50508  1.22417     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.86982  3.47591  0.13017  3.36931     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Ge_58S_start_threeb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 15 22:33:07 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2515742412
+STATS LOCAL MSV       -7.4012  0.72812
+STATS LOCAL VITERBI   -8.2474  0.72812
+STATS LOCAL FORWARD   -3.8516  0.72812
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34396  1.28536  1.50285  1.42651
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Ge_58S_start_threec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 15 22:33:13 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 40593212
+STATS LOCAL MSV       -7.8271  0.72084
+STATS LOCAL VITERBI   -7.5976  0.72084
+STATS LOCAL FORWARD   -4.2954  0.72084
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16383  1.43972  1.59552  1.39467
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.43088  1.34923  2.50068  0.56112      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Ge_58S_start_threed_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 15 22:33:19 2012
+NSEQ  213
+EFFN  5.131943
+CKSUM 1826064835
+STATS LOCAL MSV       -7.0552  0.71932
+STATS LOCAL VITERBI   -7.5420  0.71932
+STATS LOCAL FORWARD   -4.2571  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23142  1.43778  1.59724  1.31598
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  0.00000        *
+      1   2.14629  0.52401  2.57899  1.53670      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+      2   0.11726  3.69769  2.91057  3.46023      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+      3   0.11213  3.43733  3.04512  3.63695      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+      4   3.92693  0.08392  3.95360  3.17942      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+      5   3.50227  2.70908  3.53513  0.13454      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+      6   3.42069  2.46958  3.45812  0.16111      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+      7   3.55662  2.89458  3.58645  0.11828      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+      8   2.48236  1.93441  2.89501  0.33317      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+      9   0.13093  3.68529  2.64867  3.61610      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03085  4.29483  4.08979  1.46634  0.26236  1.09861  0.40547
+     10   0.25752  3.30004  1.90268  3.19463     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02774  4.29172  4.29172  1.46634  0.26236  0.96670  0.47858
+     11   3.92693  0.08392  3.95360  3.17942     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     12   0.09515  3.81975  3.08659  3.76471     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     13   0.10613  3.77714  2.92762  3.71800     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     14   3.06653  1.70977  3.12101  0.31691     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     15   3.23656  4.01339  0.07942  3.96460     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     16   3.23656  4.01339  0.07942  3.96460     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     17   0.10470  3.78262  2.94677  3.72405     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     18   3.55662  2.89458  3.58645  0.11828     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     19   3.92693  0.08392  3.95360  3.17942     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     20   3.10719  2.84118  3.43856  0.14525     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     21   3.81351  0.09741  3.61226  3.12907     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     22   3.43724  2.85466  3.22951  0.13846     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     23   1.42473  2.20720  2.35645  0.58940     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     24   3.23656  4.01339  0.07942  3.96460     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     25   3.23656  4.01339  0.07942  3.96460     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03140  4.29483  4.05874  1.46634  0.26236  1.09861  0.40547
+     26   2.96243  0.39393  3.02701  1.48967     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02776  4.29119  4.29119  1.46634  0.26236  0.94757  0.49051
+     27   3.51742  2.75827  3.54941  0.12990     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     28   3.86496  0.09554  3.89498  2.99961     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     29   3.36395  2.32301  3.40445  0.18128     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     30   2.60427  0.79117  2.59785  0.92056     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     31   1.95425  3.14672  0.25808  3.15113     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     32   3.67071  0.13489  3.71082  2.57346     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     33   0.11950  3.47856  2.90360  3.61362     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     34   1.32568  2.21797  2.28539  0.64662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     35   3.87576  0.09349  3.90518  3.02871     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     36   3.23656  4.01339  0.07942  3.96460     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     37   0.10470  3.78262  2.94677  3.72405     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     38   3.55662  2.89458  3.58645  0.11828     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     39   3.23656  4.01339  0.07942  3.96460     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     40   0.09515  3.81975  3.08659  3.76471     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     41   0.09515  3.81975  3.08659  3.76471     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     42   3.03759  3.95890  0.09122  3.90450     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     43   0.11032  3.71742  3.04887  3.41919     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     44   0.18130  3.51625  2.26621  3.42954     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02766  4.29483  4.29483  1.46634  0.26236  1.09861  0.40547
+     45   3.92693  0.08392  3.95360  3.17942     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01392  4.28109        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Ge_58S_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 15 22:32:49 2012
+NSEQ  6
+EFFN  3.325195
+CKSUM 3975223576
+STATS LOCAL MSV       -8.0799  0.71932
+STATS LOCAL VITERBI   -7.5791  0.71932
+STATS LOCAL FORWARD   -4.3067  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27300  1.44987  1.44897  1.38390
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  0.00000        *
+      1   3.43404  0.13010  3.48346  2.82967      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      2   0.14179  3.38107  2.80245  3.28281      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      3   0.14179  3.38107  2.80245  3.28281      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      4   3.43404  0.13010  3.48346  2.82967      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      5   3.08942  2.59566  3.13755  0.17855      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      6   0.14179  3.38107  2.80245  3.28281      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      7   2.72264  1.81209  2.78408  0.34362      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      8   0.14179  3.38107  2.80245  3.28281      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      9   0.14179  3.38107  2.80245  3.28281      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     10   0.14179  3.38107  2.80245  3.28281     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     11   3.43404  0.13010  3.48346  2.82967     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     12   2.94809  3.58857  0.11707  3.49333     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     13   2.94809  3.58857  0.11707  3.49333     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     14   3.08942  2.59566  3.13755  0.17855     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     15   2.94809  3.58857  0.11707  3.49333     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     16   2.94809  3.58857  0.11707  3.49333     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     17   0.14179  3.38107  2.80245  3.28281     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     18   3.08942  2.59566  3.13755  0.17855     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     19   3.43404  0.13010  3.48346  2.82967     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     20   3.08942  2.59566  3.13755  0.17855     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     21   3.43404  0.13010  3.48346  2.82967     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     22   3.08942  2.59566  3.13755  0.17855     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     23   3.08942  2.59566  3.13755  0.17855     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     24   2.94809  3.58857  0.11707  3.49333     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     25   2.94809  3.58857  0.11707  3.49333     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     26   3.43404  0.13010  3.48346  2.82967     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     27   3.08942  2.59566  3.13755  0.17855     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     28   3.43404  0.13010  3.48346  2.82967     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     29   3.08942  2.59566  3.13755  0.17855     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     30   3.43404  0.13010  3.48346  2.82967     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     31   2.94809  3.58857  0.11707  3.49333     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     32   3.08942  2.59566  3.13755  0.17855     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     33   0.14179  3.38107  2.80245  3.28281     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     34   3.08942  2.59566  3.13755  0.17855     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     35   3.43404  0.13010  3.48346  2.82967     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     36   2.94809  3.58857  0.11707  3.49333     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     37   0.14179  3.38107  2.80245  3.28281     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     38   3.08942  2.59566  3.13755  0.17855     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     39   2.94809  3.58857  0.11707  3.49333     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     40   0.14179  3.38107  2.80245  3.28281     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     41   0.14179  3.38107  2.80245  3.28281     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     42   2.94809  3.58857  0.11707  3.49333     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     43   0.14179  3.38107  2.80245  3.28281     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     44   0.14179  3.38107  2.80245  3.28281     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     45   3.43404  0.13010  3.48346  2.82967     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01860  3.99364        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Fungi_Ge_58S_start_zero_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 15 22:34:11 2012
+NSEQ  180
+EFFN  5.435486
+CKSUM 2386844801
+STATS LOCAL MSV       -6.9273  0.71932
+STATS LOCAL VITERBI   -7.5029  0.71932
+STATS LOCAL FORWARD   -4.0018  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22669  1.39207  1.56864  1.38689
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  0.00000        *
+      1   0.94710  1.00789  2.28328  1.92967      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+      2   0.11006  3.41694  3.07606  3.67815      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+      3   0.09070  3.87300  3.12235  3.82307      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+      4   3.93316  0.08956  3.96005  3.05716      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+      5   3.54913  2.69234  3.58062  0.13277      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+      6   2.52095  2.67995  2.71702  0.24210      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+      7   3.12783  2.75488  3.46033  0.14949      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+      8   2.55957  0.39454  2.86686  1.65133      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+      9   0.19534  3.51793  2.15951  3.42955      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     10   0.23152  3.41558  1.98347  3.31791     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     11   3.87382  0.10110  3.90411  2.89649     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     12   0.14372  3.68227  2.50499  3.61089     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     13   0.12817  3.73590  2.64535  3.67059     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     14   3.31150  0.24563  3.36686  1.91846     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     15   3.27060  4.06220  0.07599  4.01859     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     16   3.27060  4.06220  0.07599  4.01859     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     17   0.09070  3.87300  3.12235  3.82307     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     18   3.57372  2.77528  3.60377  0.12511     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     19   3.88180  0.09953  3.91164  2.91669     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     20   2.56446  2.67525  3.21281  0.20591     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     21   3.98414  0.07984  4.00813  3.21997     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     22   3.61686  2.93444  3.64440  0.11223     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     23   2.57644  2.40242  3.12918  0.23610     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     24   3.27060  4.06220  0.07599  4.01859     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     25   3.27060  4.06220  0.07599  4.01859     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     26   2.76126  0.93114  2.82849  0.72654     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     27   3.61686  2.93444  3.64440  0.11223     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     28   3.48590  0.11175  3.79370  2.94514     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     29   2.79868  1.91613  2.81295  0.31210     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     30   1.95243  0.83866  1.33980  1.80860     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     31   2.50102  2.89562  0.20326  3.06467     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     32   3.56931  0.15423  3.45925  2.48531     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     33   0.13855  3.69988  2.54909  3.63047     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     34   2.24350  2.70525  3.07720  0.24722     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     35   3.98414  0.07984  4.00813  3.21997     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     36   3.27060  4.06220  0.07599  4.01859     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     37   0.09070  3.87300  3.12235  3.82307     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     38   3.61686  2.93444  3.64440  0.11223     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     39   3.27060  4.06220  0.07599  4.01859     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     40   0.11072  3.79832  2.83611  3.74028     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     41   0.09070  3.87300  3.12235  3.82307     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     42   3.27060  4.06220  0.07599  4.01859     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     43   0.09070  3.87300  3.12235  3.82307     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     44   0.11325  3.78910  2.80567  3.72999     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02654  4.33539  4.33539  1.46634  0.26236  1.09861  0.40547
+     45   3.98414  0.07984  4.00813  3.21997     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01336  4.32221        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ca_4_LSU_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 14:20:50 2012
+NSEQ  19
+EFFN  3.242432
+CKSUM 4190388161
+STATS LOCAL MSV       -8.0455  0.71931
+STATS LOCAL VITERBI   -7.7318  0.71931
+STATS LOCAL FORWARD   -4.0565  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27721  1.39338  1.37511  1.51350
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  0.00000        *
+      1   2.92928  3.56127  0.12010  3.46320      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+      2   2.92928  3.56127  0.12010  3.46320      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+      3   3.06240  2.57846  3.11155  0.18296      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+      4   3.06240  2.57846  3.11155  0.18296      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+      5   0.14538  3.35422  2.78498  3.25343      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+      6   3.40308  0.13385  3.45380  2.80708      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+      7   3.40308  0.13385  3.45380  2.80708      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+      8   3.06240  2.57846  3.11155  0.18296      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+      9   3.40308  0.13385  3.45380  2.80708      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     10   0.14538  3.35422  2.78498  3.25343     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     11   2.92928  3.56127  0.12010  3.46320     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     12   2.92928  3.56127  0.12010  3.46320     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     13   3.06240  2.57846  3.11155  0.18296     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     14   3.40308  0.13385  3.45380  2.80708     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     15   0.14538  3.35422  2.78498  3.25343     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     16   2.92928  3.56127  0.12010  3.46320     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     17   0.14538  3.35422  2.78498  3.25343     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     18   2.92928  3.56127  0.12010  3.46320     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     19   0.14538  3.35422  2.78498  3.25343     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     20   0.14538  3.35422  2.78498  3.25343     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     21   2.92928  3.56127  0.12010  3.46320     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     22   0.14538  3.35422  2.78498  3.25343     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     23   3.40308  0.13385  3.45380  2.80708     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     24   3.06240  2.57846  3.11155  0.18296     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     25   0.14538  3.35422  2.78498  3.25343     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     26   3.40308  0.13385  3.45380  2.80708     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     27   3.40308  0.13385  3.45380  2.80708     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     28   3.40308  0.13385  3.45380  2.80708     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     29   2.92928  3.56127  0.12010  3.46320     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     30   3.40308  0.13385  3.45380  2.80708     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     31   3.06240  2.57846  3.11155  0.18296     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     32   2.92928  3.56127  0.12010  3.46320     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     33   2.92928  3.56127  0.12010  3.46320     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     34   0.14538  3.35422  2.78498  3.25343     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     35   3.40308  0.13385  3.45380  2.80708     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     36   3.06240  2.57846  3.11155  0.18296     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     37   2.91396  2.23691  2.96830  0.23881     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     38   0.14538  3.35422  2.78498  3.25343     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     39   0.14538  3.35422  2.78498  3.25343     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     40   2.92928  3.56127  0.12010  3.46320     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     41   3.40308  0.13385  3.45380  2.80708     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     42   0.14538  3.35422  2.78498  3.25343     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     43   3.06240  2.57846  3.11155  0.18296     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     44   0.14538  3.35422  2.78498  3.25343     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99681  3.99681  1.46634  0.26236  1.09861  0.40547
+     45   3.06240  2.57846  3.11155  0.18296     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01890  3.97827        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ca_4_LSU_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 14:21:08 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3702927743
+STATS LOCAL MSV       -7.4267  0.72841
+STATS LOCAL VITERBI   -8.2951  0.72841
+STATS LOCAL FORWARD   -3.6302  0.72841
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26770  1.34594  1.40657  1.54531
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.92825  2.28391  0.95698  2.13014      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ca_4_LSU_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 14:21:00 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2456163041
+STATS LOCAL MSV       -7.4153  0.72853
+STATS LOCAL VITERBI   -8.3192  0.72853
+STATS LOCAL FORWARD   -3.4955  0.72853
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26557  1.40180  1.40639  1.48394
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.92825  2.28391  0.95698  2.13014      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Cr_4_LSU_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 13:41:45 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 462568671
+STATS LOCAL MSV       -7.4582  0.72869
+STATS LOCAL VITERBI   -8.2930  0.72869
+STATS LOCAL FORWARD   -3.4600  0.72869
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.08140  1.40089  1.60285  1.54562
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.92825  2.28391  0.95698  2.13014     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Cr_4_LSU_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 13:42:00 2012
+NSEQ  4
+EFFN  3.324219
+CKSUM 2616281576
+STATS LOCAL MSV       -7.9946  0.71933
+STATS LOCAL VITERBI   -7.6382  0.71933
+STATS LOCAL FORWARD   -4.2064  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.07278  1.32492  1.68182  1.57947
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  0.00000        *
+      1   3.43368  0.13014  3.48311  2.82941      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      2   0.14183  3.38076  2.80224  3.28247      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      3   0.14183  3.38076  2.80224  3.28247      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      4   3.08911  2.59546  3.13724  0.17860      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      5   2.94787  3.58826  0.11710  3.49298      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      6   0.14183  3.38076  2.80224  3.28247      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      7   3.43368  0.13014  3.48311  2.82941      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      8   3.43368  0.13014  3.48311  2.82941      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      9   3.08911  2.59546  3.13724  0.17860      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     10   3.43368  0.13014  3.48311  2.82941     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     11   0.39665  2.76258  1.64938  2.62921     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     12   0.14183  3.38076  2.80224  3.28247     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     13   0.14183  3.38076  2.80224  3.28247     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     14   3.08911  2.59546  3.13724  0.17860     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     15   3.43368  0.13014  3.48311  2.82941     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     16   0.14183  3.38076  2.80224  3.28247     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     17   2.94787  3.58826  0.11710  3.49298     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     18   0.14183  3.38076  2.80224  3.28247     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     19   3.08911  2.59546  3.13724  0.17860     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     20   2.94787  3.58826  0.11710  3.49298     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     21   0.14183  3.38076  2.80224  3.28247     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     22   2.94787  3.58826  0.11710  3.49298     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     23   0.14183  3.38076  2.80224  3.28247     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     24   3.43368  0.13014  3.48311  2.82941     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     25   3.08911  2.59546  3.13724  0.17860     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     26   0.14183  3.38076  2.80224  3.28247     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     27   3.43368  0.13014  3.48311  2.82941     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     28   3.43368  0.13014  3.48311  2.82941     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     29   3.43368  0.13014  3.48311  2.82941     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     30   2.94787  3.58826  0.11710  3.49298     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     31   3.43368  0.13014  3.48311  2.82941     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     32   3.08911  2.59546  3.13724  0.17860     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     33   2.94787  3.58826  0.11710  3.49298     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     34   0.14183  3.38076  2.80224  3.28247     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     35   0.14183  3.38076  2.80224  3.28247     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     36   3.43368  0.13014  3.48311  2.82941     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     37   3.08911  2.59546  3.13724  0.17860     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     38   3.08911  2.59546  3.13724  0.17860     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     39   0.14183  3.38076  2.80224  3.28247     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     40   0.14183  3.38076  2.80224  3.28247     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     41   2.94787  3.58826  0.11710  3.49298     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     42   3.43368  0.13014  3.48311  2.82941     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     43   0.14183  3.38076  2.80224  3.28247     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     44   3.08911  2.59546  3.13724  0.17860     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     45   0.14183  3.38076  2.80224  3.28247     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01861  3.99346        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:10:54 2012
+NSEQ  13
+EFFN  3.157959
+CKSUM 2705029945
+STATS LOCAL MSV       -8.1009  0.71932
+STATS LOCAL VITERBI   -7.5556  0.71932
+STATS LOCAL FORWARD   -3.5932  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21948  1.27457  1.37951  1.75237
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  0.00000        *
+      1   0.14927  3.32605  2.76656  3.22263      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+      2   3.37054  0.13793  3.42260  2.78321      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+      3   0.14927  3.32605  2.76656  3.22263      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+      4   3.03421  2.56047  3.08443  0.18770      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+      5   2.90932  3.53245  0.12339  3.43146      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+      6   0.14927  3.32605  2.76656  3.22263      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+      7   3.37054  0.13793  3.42260  2.78321      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+      8   3.37054  0.13793  3.42260  2.78321      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+      9   3.03421  2.56047  3.08443  0.18770      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     10   3.37054  0.13793  3.42260  2.78321     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     11   0.14927  3.32605  2.76656  3.22263     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     12   3.37054  0.13793  3.42260  2.78321     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     13   2.90932  3.53245  0.12339  3.43146     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     14   2.90932  3.53245  0.12339  3.43146     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     15   2.90932  3.53245  0.12339  3.43146     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     16   2.90932  3.53245  0.12339  3.43146     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     17   2.90932  3.53245  0.12339  3.43146     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     18   3.37054  0.13793  3.42260  2.78321     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     19   0.14927  3.32605  2.76656  3.22263     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     20   0.14927  3.32605  2.76656  3.22263     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     21   2.90932  3.53245  0.12339  3.43146     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     22   0.14927  3.32605  2.76656  3.22263     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     23   3.37054  0.13793  3.42260  2.78321     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     24   2.90932  3.53245  0.12339  3.43146     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     25   0.14927  3.32605  2.76656  3.22263     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     26   3.37054  0.13793  3.42260  2.78321     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     27   3.37054  0.13793  3.42260  2.78321     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     28   3.37054  0.13793  3.42260  2.78321     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     29   2.90932  3.53245  0.12339  3.43146     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     30   3.37054  0.13793  3.42260  2.78321     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     31   3.03421  2.56047  3.08443  0.18770     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     32   0.14927  3.32605  2.76656  3.22263     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     33   2.90932  3.53245  0.12339  3.43146     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     34   0.14927  3.32605  2.76656  3.22263     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     35   3.37054  0.13793  3.42260  2.78321     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     36   3.03421  2.56047  3.08443  0.18770     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     37   3.03421  2.56047  3.08443  0.18770     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     38   0.14927  3.32605  2.76656  3.22263     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     39   0.14927  3.32605  2.76656  3.22263     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     40   2.90932  3.53245  0.12339  3.43146     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     41   3.37054  0.13793  3.42260  2.78321     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     42   0.14927  3.32605  2.76656  3.22263     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     43   3.03421  2.56047  3.08443  0.18770     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     44   0.14927  3.32605  2.76656  3.22263     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03804  3.98117  3.98117  1.46634  0.26236  1.09861  0.40547
+     45   3.03421  2.56047  3.08443  0.18770     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01920  3.96233        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_eighteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:12:42 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3855300155
+STATS LOCAL MSV       -7.3864  0.72798
+STATS LOCAL VITERBI   -8.1812  0.72798
+STATS LOCAL FORWARD   -3.4551  0.72798
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28556  1.46229  1.37140  1.43528
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.57915  2.25909  2.64442  0.28946     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   0.23862  2.84929  2.43386  2.70756     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.53331  3.02441  0.20344  2.88069     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_eleven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:11:26 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2817641508
+STATS LOCAL MSV       -7.4790  0.72747
+STATS LOCAL VITERBI   -8.1480  0.72747
+STATS LOCAL FORWARD   -3.5143  0.72747
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28620  1.41386  1.26126  1.62364
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.57915  2.25909  2.64442  0.28946     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   0.23862  2.84929  2.43386  2.70756     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.53331  3.02441  0.20344  2.88069     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_fifteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:12:12 2012
+NSEQ  50
+EFFN  3.219604
+CKSUM 1135089104
+STATS LOCAL MSV       -8.0607  0.71933
+STATS LOCAL VITERBI   -7.6980  0.71933
+STATS LOCAL FORWARD   -4.1210  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16433  1.33117  1.52336  1.58123
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  0.00000        *
+      1   0.14641  3.34669  2.78006  3.24519      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+      2   3.05484  2.57364  3.10428  0.18422      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+      3   2.92396  3.55357  0.12097  3.45473      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+      4   3.05484  2.57364  3.10428  0.18422      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+      5   0.14641  3.34669  2.78006  3.24519      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+      6   2.92396  3.55357  0.12097  3.45473      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+      7   3.39438  0.13492  3.44546  2.80072      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+      8   3.39438  0.13492  3.44546  2.80072      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+      9   3.05484  2.57364  3.10428  0.18422      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     10   3.39438  0.13492  3.44546  2.80072     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     11   0.14641  3.34669  2.78006  3.24519     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     12   3.39438  0.13492  3.44546  2.80072     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     13   3.05484  2.57364  3.10428  0.18422     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     14   2.92396  3.55357  0.12097  3.45473     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     15   2.92396  3.55357  0.12097  3.45473     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     16   2.92396  3.55357  0.12097  3.45473     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     17   0.14641  3.34669  2.78006  3.24519     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     18   3.39438  0.13492  3.44546  2.80072     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     19   0.14641  3.34669  2.78006  3.24519     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     20   0.14641  3.34669  2.78006  3.24519     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     21   2.92396  3.55357  0.12097  3.45473     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     22   0.14641  3.34669  2.78006  3.24519     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     23   3.39438  0.13492  3.44546  2.80072     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     24   0.14641  3.34669  2.78006  3.24519     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     25   0.14641  3.34669  2.78006  3.24519     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     26   3.39438  0.13492  3.44546  2.80072     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     27   3.39438  0.13492  3.44546  2.80072     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     28   3.39438  0.13492  3.44546  2.80072     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     29   2.92396  3.55357  0.12097  3.45473     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     30   3.39438  0.13492  3.44546  2.80072     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     31   3.05484  2.57364  3.10428  0.18422     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     32   0.14641  3.34669  2.78006  3.24519     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     33   2.92396  3.55357  0.12097  3.45473     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     34   0.14641  3.34669  2.78006  3.24519     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     35   3.39438  0.13492  3.44546  2.80072     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     36   3.05484  2.57364  3.10428  0.18422     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     37   3.05484  2.57364  3.10428  0.18422     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     38   0.14641  3.34669  2.78006  3.24519     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     39   0.14641  3.34669  2.78006  3.24519     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     40   2.92396  3.55357  0.12097  3.45473     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     41   3.39438  0.13492  3.44546  2.80072     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     42   0.14641  3.34669  2.78006  3.24519     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     43   3.05484  2.57364  3.10428  0.18422     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     44   0.14641  3.34669  2.78006  3.24519     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99261  3.99261  1.46634  0.26236  1.09861  0.40547
+     45   3.05484  2.57364  3.10428  0.18422     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01898  3.97398        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:10:19 2012
+NSEQ  58
+EFFN  3.366577
+CKSUM 526913815
+STATS LOCAL MSV       -8.0154  0.71932
+STATS LOCAL VITERBI   -7.6321  0.71932
+STATS LOCAL FORWARD   -4.1032  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26107  1.45672  1.39738  1.44221
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  0.00000        *
+      1   0.14007  3.39421  2.81098  3.29720      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+      2   3.44918  0.12831  3.49795  2.84068      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+      3   0.14007  3.39421  2.81098  3.29720      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+      4   3.10271  2.60411  3.15033  0.17642      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+      5   1.57245  2.78044  0.41659  2.64282      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+      6   0.14007  3.39421  2.81098  3.29720      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+      7   3.44918  0.12831  3.49795  2.84068      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+      8   3.44918  0.12831  3.49795  2.84068      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+      9   3.10271  2.60411  3.15033  0.17642      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     10   3.44918  0.12831  3.49795  2.84068     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     11   0.14007  3.39421  2.81098  3.29720     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     12   2.95723  3.60189  0.11562  3.50803     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     13   2.91751  2.17994  2.97197  0.24631     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     14   2.95723  3.60189  0.11562  3.50803     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     15   2.95723  3.60189  0.11562  3.50803     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     16   2.95723  3.60189  0.11562  3.50803     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     17   2.95723  3.60189  0.11562  3.50803     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     18   3.10271  2.60411  3.15033  0.17642     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     19   0.14007  3.39421  2.81098  3.29720     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     20   2.95723  3.60189  0.11562  3.50803     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     21   2.95723  3.60189  0.11562  3.50803     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     22   0.14007  3.39421  2.81098  3.29720     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     23   3.10271  2.60411  3.15033  0.17642     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     24   3.10271  2.60411  3.15033  0.17642     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     25   0.14007  3.39421  2.81098  3.29720     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     26   3.44918  0.12831  3.49795  2.84068     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     27   3.44918  0.12831  3.49795  2.84068     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     28   3.44918  0.12831  3.49795  2.84068     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     29   2.95723  3.60189  0.11562  3.50803     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     30   3.44918  0.12831  3.49795  2.84068     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     31   3.10271  2.60411  3.15033  0.17642     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     32   0.14007  3.39421  2.81098  3.29720     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     33   2.95723  3.60189  0.11562  3.50803     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     34   0.14007  3.39421  2.81098  3.29720     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     35   3.44918  0.12831  3.49795  2.84068     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     36   3.10271  2.60411  3.15033  0.17642     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     37   3.10271  2.60411  3.15033  0.17642     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     38   0.14007  3.39421  2.81098  3.29720     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     39   0.14007  3.39421  2.81098  3.29720     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     40   2.95723  3.60189  0.11562  3.50803     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     41   3.44918  0.12831  3.49795  2.84068     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     42   0.14007  3.39421  2.81098  3.29720     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     43   3.10271  2.60411  3.15033  0.17642     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     44   0.14007  3.39421  2.81098  3.29720     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     45   3.10271  2.60411  3.15033  0.17642     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01846  4.00124        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:10:10 2012
+NSEQ  11
+EFFN  3.316650
+CKSUM 3258118811
+STATS LOCAL MSV       -8.0583  0.71932
+STATS LOCAL VITERBI   -7.7146  0.71932
+STATS LOCAL FORWARD   -4.1884  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21217  1.44989  1.37425  1.53793
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  0.00000        *
+      1   0.14215  3.37833  2.80067  3.27981      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      2   2.47157  1.27607  2.54108  0.58405      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      3   0.14215  3.37833  2.80067  3.27981      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      4   3.08666  2.59390  3.13489  0.17899      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      5   2.94618  3.58579  0.11737  3.49026      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      6   0.14215  3.37833  2.80067  3.27981      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      7   3.43088  0.13047  3.48043  2.82738      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      8   3.43088  0.13047  3.48043  2.82738      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      9   3.08666  2.59390  3.13489  0.17899      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     10   3.43088  0.13047  3.48043  2.82738     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     11   0.14215  3.37833  2.80067  3.27981     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     12   2.94618  3.58579  0.11737  3.49026     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     13   3.08666  2.59390  3.13489  0.17899     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     14   2.94618  3.58579  0.11737  3.49026     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     15   2.94618  3.58579  0.11737  3.49026     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     16   2.94618  3.58579  0.11737  3.49026     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     17   2.94618  3.58579  0.11737  3.49026     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     18   3.08666  2.59390  3.13489  0.17899     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     19   0.14215  3.37833  2.80067  3.27981     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     20   2.94618  3.58579  0.11737  3.49026     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     21   2.94618  3.58579  0.11737  3.49026     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     22   0.14215  3.37833  2.80067  3.27981     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     23   3.43088  0.13047  3.48043  2.82738     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     24   0.14215  3.37833  2.80067  3.27981     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     25   0.14215  3.37833  2.80067  3.27981     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     26   3.43088  0.13047  3.48043  2.82738     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     27   3.43088  0.13047  3.48043  2.82738     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     28   3.43088  0.13047  3.48043  2.82738     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     29   2.94618  3.58579  0.11737  3.49026     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     30   3.43088  0.13047  3.48043  2.82738     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     31   3.08666  2.59390  3.13489  0.17899     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     32   0.14215  3.37833  2.80067  3.27981     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     33   2.94618  3.58579  0.11737  3.49026     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     34   0.14215  3.37833  2.80067  3.27981     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     35   3.43088  0.13047  3.48043  2.82738     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     36   3.08666  2.59390  3.13489  0.17899     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     37   3.08666  2.59390  3.13489  0.17899     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     38   0.14215  3.37833  2.80067  3.27981     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     39   0.14215  3.37833  2.80067  3.27981     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     40   2.94618  3.58579  0.11737  3.49026     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     41   3.43088  0.13047  3.48043  2.82738     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     42   0.14215  3.37833  2.80067  3.27981     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     43   3.08666  2.59390  3.13489  0.17899     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     44   0.14215  3.37833  2.80067  3.27981     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     45   3.08666  2.59390  3.13489  0.17899     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01863  3.99206        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_fourteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:12:00 2012
+NSEQ  7
+EFFN  3.366699
+CKSUM 366298019
+STATS LOCAL MSV       -8.0149  0.71932
+STATS LOCAL VITERBI   -7.6493  0.71932
+STATS LOCAL FORWARD   -3.9581  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.31469  1.38818  1.41406  1.43230
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  0.00000        *
+      1   0.14006  3.39425  2.81100  3.29724      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+      2   3.10275  2.60413  3.15037  0.17641      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+      3   2.95726  3.60193  0.11562  3.50808      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+      4   3.10275  2.60413  3.15037  0.17641      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+      5   2.95726  3.60193  0.11562  3.50808      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+      6   1.05395  2.54981  0.72758  2.40493      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+      7   3.44922  0.12830  3.49800  2.84071      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+      8   3.44922  0.12830  3.49800  2.84071      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+      9   3.10275  2.60413  3.15037  0.17641      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     10   3.44922  0.12830  3.49800  2.84071     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     11   0.14006  3.39425  2.81100  3.29724     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     12   3.44922  0.12830  3.49800  2.84071     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     13   3.10275  2.60413  3.15037  0.17641     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     14   2.95726  3.60193  0.11562  3.50808     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     15   2.95726  3.60193  0.11562  3.50808     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     16   2.95726  3.60193  0.11562  3.50808     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     17   2.95726  3.60193  0.11562  3.50808     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     18   3.10275  2.60413  3.15037  0.17641     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     19   0.14006  3.39425  2.81100  3.29724     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     20   0.14006  3.39425  2.81100  3.29724     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     21   2.95726  3.60193  0.11562  3.50808     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     22   0.14006  3.39425  2.81100  3.29724     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     23   3.44922  0.12830  3.49800  2.84071     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     24   3.10275  2.60413  3.15037  0.17641     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     25   0.14006  3.39425  2.81100  3.29724     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     26   3.44922  0.12830  3.49800  2.84071     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     27   3.44922  0.12830  3.49800  2.84071     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     28   3.44922  0.12830  3.49800  2.84071     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     29   2.95726  3.60193  0.11562  3.50808     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     30   3.44922  0.12830  3.49800  2.84071     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     31   3.10275  2.60413  3.15037  0.17641     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     32   0.14006  3.39425  2.81100  3.29724     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     33   2.95726  3.60193  0.11562  3.50808     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     34   0.14006  3.39425  2.81100  3.29724     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     35   3.44922  0.12830  3.49800  2.84071     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     36   3.10275  2.60413  3.15037  0.17641     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     37   3.10275  2.60413  3.15037  0.17641     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     38   0.14006  3.39425  2.81100  3.29724     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     39   0.14006  3.39425  2.81100  3.29724     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     40   2.95726  3.60193  0.11562  3.50808     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     41   3.44922  0.12830  3.49800  2.84071     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     42   0.14006  3.39425  2.81100  3.29724     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     43   3.10275  2.60413  3.15037  0.17641     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     44   0.14006  3.39425  2.81100  3.29724     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01939  4.01939  1.46634  0.26236  1.09861  0.40547
+     45   3.10275  2.60413  3.15037  0.17641     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01846  4.00126        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:11:04 2012
+NSEQ  4
+EFFN  3.167969
+CKSUM 3067086391
+STATS LOCAL MSV       -8.0355  0.71932
+STATS LOCAL VITERBI   -7.6329  0.71932
+STATS LOCAL FORWARD   -3.6630  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27595  1.33491  1.31386  1.66669
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  0.00000        *
+      1   0.14880  3.32943  2.76878  3.22633      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      2   3.37444  0.13743  3.42635  2.78609      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      3   0.14880  3.32943  2.76878  3.22633      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      4   3.03758  2.56263  3.08768  0.18713      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      5   2.91173  3.53592  0.12299  3.43528      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      6   0.14880  3.32943  2.76878  3.22633      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      7   3.37444  0.13743  3.42635  2.78609      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      8   3.37444  0.13743  3.42635  2.78609      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      9   3.03758  2.56263  3.08768  0.18713      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     10   3.37444  0.13743  3.42635  2.78609     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     11   0.14880  3.32943  2.76878  3.22633     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     12   3.37444  0.13743  3.42635  2.78609     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     13   2.91173  3.53592  0.12299  3.43528     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     14   2.91173  3.53592  0.12299  3.43528     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     15   2.91173  3.53592  0.12299  3.43528     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     16   2.91173  3.53592  0.12299  3.43528     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     17   2.91173  3.53592  0.12299  3.43528     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     18   3.03758  2.56263  3.08768  0.18713     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     19   2.91173  3.53592  0.12299  3.43528     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     20   0.14880  3.32943  2.76878  3.22633     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     21   2.91173  3.53592  0.12299  3.43528     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     22   0.14880  3.32943  2.76878  3.22633     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     23   3.37444  0.13743  3.42635  2.78609     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     24   2.91173  3.53592  0.12299  3.43528     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     25   0.14880  3.32943  2.76878  3.22633     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     26   3.37444  0.13743  3.42635  2.78609     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     27   3.37444  0.13743  3.42635  2.78609     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     28   3.37444  0.13743  3.42635  2.78609     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     29   2.91173  3.53592  0.12299  3.43528     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     30   3.37444  0.13743  3.42635  2.78609     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     31   3.03758  2.56263  3.08768  0.18713     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     32   0.14880  3.32943  2.76878  3.22633     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     33   2.91173  3.53592  0.12299  3.43528     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     34   0.14880  3.32943  2.76878  3.22633     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     35   3.37444  0.13743  3.42635  2.78609     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     36   3.03758  2.56263  3.08768  0.18713     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     37   3.03758  2.56263  3.08768  0.18713     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     38   0.14880  3.32943  2.76878  3.22633     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     39   0.14880  3.32943  2.76878  3.22633     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     40   2.91173  3.53592  0.12299  3.43528     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     41   3.37444  0.13743  3.42635  2.78609     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     42   0.14880  3.32943  2.76878  3.22633     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     43   3.03758  2.56263  3.08768  0.18713     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     44   0.14880  3.32943  2.76878  3.22633     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     45   3.03758  2.56263  3.08768  0.18713     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01917  3.96423        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_nineteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:12:55 2012
+NSEQ  6
+EFFN  3.284180
+CKSUM 23176094
+STATS LOCAL MSV       -7.9987  0.71932
+STATS LOCAL VITERBI   -7.5653  0.71932
+STATS LOCAL FORWARD   -4.0254  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21819  1.45984  1.52289  1.37089
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  0.00000        *
+      1   3.07610  2.58718  3.12474  0.18071      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+      2   2.93885  3.57515  0.11855  3.47852      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+      3   0.14354  3.36786  2.79386  3.26835      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+      4   3.07610  2.58718  3.12474  0.18071      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+      5   2.93885  3.57515  0.11855  3.47852      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+      6   0.14354  3.36786  2.79386  3.26835      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+      7   3.41881  0.13193  3.46887  2.81857      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+      8   3.41881  0.13193  3.46887  2.81857      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+      9   3.07610  2.58718  3.12474  0.18071      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     10   3.41881  0.13193  3.46887  2.81857     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     11   0.14354  3.36786  2.79386  3.26835     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     12   3.41881  0.13193  3.46887  2.81857     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     13   2.93885  3.57515  0.11855  3.47852     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     14   2.93885  3.57515  0.11855  3.47852     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     15   3.07610  2.58718  3.12474  0.18071     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     16   2.93885  3.57515  0.11855  3.47852     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     17   2.93885  3.57515  0.11855  3.47852     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     18   3.07610  2.58718  3.12474  0.18071     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     19   0.14354  3.36786  2.79386  3.26835     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     20   0.14354  3.36786  2.79386  3.26835     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     21   2.93885  3.57515  0.11855  3.47852     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     22   0.14354  3.36786  2.79386  3.26835     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     23   3.07610  2.58718  3.12474  0.18071     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     24   3.07610  2.58718  3.12474  0.18071     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     25   0.14354  3.36786  2.79386  3.26835     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     26   3.41881  0.13193  3.46887  2.81857     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     27   3.41881  0.13193  3.46887  2.81857     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     28   3.41881  0.13193  3.46887  2.81857     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     29   2.93885  3.57515  0.11855  3.47852     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     30   3.41881  0.13193  3.46887  2.81857     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     31   3.07610  2.58718  3.12474  0.18071     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     32   0.14354  3.36786  2.79386  3.26835     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     33   0.14354  3.36786  2.79386  3.26835     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     34   0.14354  3.36786  2.79386  3.26835     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     35   3.41881  0.13193  3.46887  2.81857     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     36   3.07610  2.58718  3.12474  0.18071     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     37   3.07610  2.58718  3.12474  0.18071     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     38   0.14354  3.36786  2.79386  3.26835     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     39   0.14354  3.36786  2.79386  3.26835     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     40   2.93885  3.57515  0.11855  3.47852     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     41   3.41881  0.13193  3.46887  2.81857     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     42   0.14354  3.36786  2.79386  3.26835     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     43   3.07610  2.58718  3.12474  0.18071     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     44   0.14354  3.36786  2.79386  3.26835     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     45   3.07610  2.58718  3.12474  0.18071     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01875  3.98605        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:09:01 2012
+NSEQ  443
+EFFN  3.268288
+CKSUM 3859672082
+STATS LOCAL MSV       -8.1605  0.71933
+STATS LOCAL VITERBI   -7.5885  0.71933
+STATS LOCAL FORWARD   -4.0027  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27573  1.39145  1.37906  1.51301
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  0.00000        *
+      1   2.51173  3.35199  0.16864  3.24308      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+      2   3.41285  0.13265  3.46316  2.81423      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+      3   0.15579  3.31873  2.68834  3.21717      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+      4   3.07091  2.58388  3.11974  0.18156      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+      5   2.93523  3.56990  0.11913  3.47272      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+      6   0.14424  3.36269  2.79050  3.26270      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+      7   3.41285  0.13265  3.46316  2.81423      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+      8   3.41285  0.13265  3.46316  2.81423      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+      9   3.07091  2.58388  3.11974  0.18156      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     10   3.41285  0.13265  3.46316  2.81423     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     11   0.15579  3.31873  2.68834  3.21717     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     12   3.07091  2.58388  3.11974  0.18156     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     13   2.94141  2.28208  2.99477  0.22930     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     14   2.93523  3.56990  0.11913  3.47272     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     15   2.93523  3.56990  0.11913  3.47272     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     16   2.93523  3.56990  0.11913  3.47272     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     17   2.93523  3.56990  0.11913  3.47272     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     18   3.07091  2.58388  3.11974  0.18156     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     19   0.14424  3.36269  2.79050  3.26270     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     20   2.93523  3.56990  0.11913  3.47272     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     21   2.93523  3.56990  0.11913  3.47272     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     22   0.14424  3.36269  2.79050  3.26270     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     23   3.41285  0.13265  3.46316  2.81423     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     24   0.14424  3.36269  2.79050  3.26270     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     25   0.14424  3.36269  2.79050  3.26270     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     26   3.41285  0.13265  3.46316  2.81423     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     27   3.41285  0.13265  3.46316  2.81423     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     28   3.41285  0.13265  3.46316  2.81423     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     29   2.93523  3.56990  0.11913  3.47272     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     30   3.41285  0.13265  3.46316  2.81423     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     31   3.07091  2.58388  3.11974  0.18156     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     32   0.14424  3.36269  2.79050  3.26270     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     33   2.93523  3.56990  0.11913  3.47272     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     34   0.14424  3.36269  2.79050  3.26270     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     35   3.41285  0.13265  3.46316  2.81423     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     36   3.07091  2.58388  3.11974  0.18156     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     37   3.07091  2.58388  3.11974  0.18156     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     38   0.14424  3.36269  2.79050  3.26270     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     39   0.14424  3.36269  2.79050  3.26270     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     40   2.93523  3.56990  0.11913  3.47272     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     41   3.41285  0.13265  3.46316  2.81423     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     42   0.14424  3.36269  2.79050  3.26270     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     43   3.07091  2.58388  3.11974  0.18156     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     44   0.14424  3.36269  2.79050  3.26270     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00155  4.00155  1.46634  0.26236  1.09861  0.40547
+     45   3.07091  2.58388  3.11974  0.18156     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01880  3.98310        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:10:45 2012
+NSEQ  168
+EFFN  3.319702
+CKSUM 1179856698
+STATS LOCAL MSV       -8.0725  0.71933
+STATS LOCAL VITERBI   -7.5240  0.71933
+STATS LOCAL FORWARD   -3.7224  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33082  1.36653  1.24770  1.64204
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  0.00000        *
+      1   0.14202  3.37931  2.80130  3.28088      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+      2   3.43201  0.13034  3.48151  2.82820      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+      3   0.14202  3.37931  2.80130  3.28088      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+      4   3.08765  2.59453  3.13584  0.17883      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+      5   2.94686  3.58679  0.11727  3.49136      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+      6   0.14202  3.37931  2.80130  3.28088      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+      7   3.43201  0.13034  3.48151  2.82820      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+      8   3.43201  0.13034  3.48151  2.82820      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+      9   3.08765  2.59453  3.13584  0.17883      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     10   3.43201  0.13034  3.48151  2.82820     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     11   0.14202  3.37931  2.80130  3.28088     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     12   3.43201  0.13034  3.48151  2.82820     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     13   2.94686  3.58679  0.11727  3.49136     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     14   2.94686  3.58679  0.11727  3.49136     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     15   2.94686  3.58679  0.11727  3.49136     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     16   2.94686  3.58679  0.11727  3.49136     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     17   2.94686  3.58679  0.11727  3.49136     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     18   2.78284  1.93195  2.84216  0.30792     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     19   2.94686  3.58679  0.11727  3.49136     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     20   2.94686  3.58679  0.11727  3.49136     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     21   2.94686  3.58679  0.11727  3.49136     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     22   0.14202  3.37931  2.80130  3.28088     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     23   2.40431  0.92015  2.47659  0.85054     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     24   2.94686  3.58679  0.11727  3.49136     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     25   0.14202  3.37931  2.80130  3.28088     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     26   3.43201  0.13034  3.48151  2.82820     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     27   3.43201  0.13034  3.48151  2.82820     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     28   3.43201  0.13034  3.48151  2.82820     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     29   2.94686  3.58679  0.11727  3.49136     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     30   3.43201  0.13034  3.48151  2.82820     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     31   3.08765  2.59453  3.13584  0.17883     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     32   0.14202  3.37931  2.80130  3.28088     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     33   2.94686  3.58679  0.11727  3.49136     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     34   0.14202  3.37931  2.80130  3.28088     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     35   3.43201  0.13034  3.48151  2.82820     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     36   3.08765  2.59453  3.13584  0.17883     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     37   3.08765  2.59453  3.13584  0.17883     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     38   0.14202  3.37931  2.80130  3.28088     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     39   0.14202  3.37931  2.80130  3.28088     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     40   2.94686  3.58679  0.11727  3.49136     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     41   3.43201  0.13034  3.48151  2.82820     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     42   0.14202  3.37931  2.80130  3.28088     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     43   3.08765  2.59453  3.13584  0.17883     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     44   0.14202  3.37931  2.80130  3.28088     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01091  4.01091  1.46634  0.26236  1.09861  0.40547
+     45   3.08765  2.59453  3.13584  0.17883     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01862  3.99263        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_seventeen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:12:31 2012
+NSEQ  5
+EFFN  3.217773
+CKSUM 699182277
+STATS LOCAL MSV       -8.1467  0.71933
+STATS LOCAL VITERBI   -7.5859  0.71933
+STATS LOCAL FORWARD   -3.9876  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27721  1.39464  1.37671  1.51024
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  0.00000        *
+      1   2.92353  3.55295  0.12104  3.45404      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      2   3.39368  0.13501  3.44479  2.80020      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      3   0.14649  3.34608  2.77966  3.24453      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      4   3.05424  2.57325  3.10370  0.18432      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      5   2.92353  3.55295  0.12104  3.45404      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      6   0.14649  3.34608  2.77966  3.24453      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      7   3.39368  0.13501  3.44479  2.80020      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      8   3.39368  0.13501  3.44479  2.80020      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      9   3.05424  2.57325  3.10370  0.18432      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     10   3.39368  0.13501  3.44479  2.80020     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     11   0.14649  3.34608  2.77966  3.24453     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     12   3.05424  2.57325  3.10370  0.18432     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     13   3.05424  2.57325  3.10370  0.18432     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     14   2.92353  3.55295  0.12104  3.45404     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     15   2.92353  3.55295  0.12104  3.45404     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     16   2.92353  3.55295  0.12104  3.45404     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     17   2.92353  3.55295  0.12104  3.45404     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     18   3.05424  2.57325  3.10370  0.18432     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     19   0.14649  3.34608  2.77966  3.24453     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     20   2.92353  3.55295  0.12104  3.45404     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     21   2.92353  3.55295  0.12104  3.45404     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     22   0.14649  3.34608  2.77966  3.24453     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     23   3.39368  0.13501  3.44479  2.80020     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     24   0.14649  3.34608  2.77966  3.24453     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     25   0.14649  3.34608  2.77966  3.24453     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     26   3.39368  0.13501  3.44479  2.80020     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     27   3.39368  0.13501  3.44479  2.80020     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     28   3.39368  0.13501  3.44479  2.80020     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     29   2.92353  3.55295  0.12104  3.45404     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     30   3.39368  0.13501  3.44479  2.80020     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     31   3.05424  2.57325  3.10370  0.18432     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     32   0.14649  3.34608  2.77966  3.24453     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     33   2.92353  3.55295  0.12104  3.45404     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     34   0.14649  3.34608  2.77966  3.24453     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     35   3.39368  0.13501  3.44479  2.80020     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     36   3.05424  2.57325  3.10370  0.18432     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     37   3.05424  2.57325  3.10370  0.18432     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     38   0.14649  3.34608  2.77966  3.24453     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     39   0.14649  3.34608  2.77966  3.24453     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     40   2.92353  3.55295  0.12104  3.45404     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     41   3.39368  0.13501  3.44479  2.80020     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     42   0.14649  3.34608  2.77966  3.24453     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     43   3.05424  2.57325  3.10370  0.18432     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     44   0.14649  3.34608  2.77966  3.24453     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     45   3.05424  2.57325  3.10370  0.18432     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01898  3.97364        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:10:34 2012
+NSEQ  11
+EFFN  3.236084
+CKSUM 2884466154
+STATS LOCAL MSV       -8.0495  0.71933
+STATS LOCAL VITERBI   -7.7239  0.71933
+STATS LOCAL FORWARD   -3.9426  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16088  1.46591  1.44654  1.51167
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  0.00000        *
+      1   0.14567  3.35213  2.78361  3.25115      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+      2   3.40067  0.13415  3.45149  2.80532      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+      3   0.14567  3.35213  2.78361  3.25115      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+      4   3.06030  2.57712  3.10954  0.18331      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+      5   0.14567  3.35213  2.78361  3.25115      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+      6   0.14567  3.35213  2.78361  3.25115      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+      7   3.40067  0.13415  3.45149  2.80532      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+      8   3.40067  0.13415  3.45149  2.80532      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+      9   3.06030  2.57712  3.10954  0.18331      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     10   3.40067  0.13415  3.45149  2.80532     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     11   0.14567  3.35213  2.78361  3.25115     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     12   2.92780  3.55913  0.12034  3.46085     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     13   3.06030  2.57712  3.10954  0.18331     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     14   2.92780  3.55913  0.12034  3.46085     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     15   2.92780  3.55913  0.12034  3.46085     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     16   2.92780  3.55913  0.12034  3.46085     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     17   2.92780  3.55913  0.12034  3.46085     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     18   3.06030  2.57712  3.10954  0.18331     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     19   0.14567  3.35213  2.78361  3.25115     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     20   2.92780  3.55913  0.12034  3.46085     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     21   2.92780  3.55913  0.12034  3.46085     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     22   0.14567  3.35213  2.78361  3.25115     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     23   0.14567  3.35213  2.78361  3.25115     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     24   3.06030  2.57712  3.10954  0.18331     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     25   0.14567  3.35213  2.78361  3.25115     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     26   3.40067  0.13415  3.45149  2.80532     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     27   3.40067  0.13415  3.45149  2.80532     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     28   3.40067  0.13415  3.45149  2.80532     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     29   2.92780  3.55913  0.12034  3.46085     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     30   3.40067  0.13415  3.45149  2.80532     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     31   3.06030  2.57712  3.10954  0.18331     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     32   0.14567  3.35213  2.78361  3.25115     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     33   2.92780  3.55913  0.12034  3.46085     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     34   0.14567  3.35213  2.78361  3.25115     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     35   3.40067  0.13415  3.45149  2.80532     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     36   3.06030  2.57712  3.10954  0.18331     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     37   3.06030  2.57712  3.10954  0.18331     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     38   0.14567  3.35213  2.78361  3.25115     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     39   0.14567  3.35213  2.78361  3.25115     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     40   2.92780  3.55913  0.12034  3.46085     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     41   3.40067  0.13415  3.45149  2.80532     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     42   0.14567  3.35213  2.78361  3.25115     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     43   3.06030  2.57712  3.10954  0.18331     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     44   0.14567  3.35213  2.78361  3.25115     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03749  3.99564  3.99564  1.46634  0.26236  1.09861  0.40547
+     45   3.06030  2.57712  3.10954  0.18331     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01892  3.97708        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_sixteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:12:21 2012
+NSEQ  63
+EFFN  3.264587
+CKSUM 384028687
+STATS LOCAL MSV       -8.1554  0.71933
+STATS LOCAL VITERBI   -7.5944  0.71933
+STATS LOCAL FORWARD   -3.9770  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34567  1.32431  1.44876  1.43219
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  0.00000        *
+      1   3.06969  2.58310  3.11857  0.18176      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+      2   3.06969  2.58310  3.11857  0.18176      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+      3   2.93438  3.56866  0.11927  3.47136      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+      4   2.93438  3.56866  0.11927  3.47136      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+      5   3.06969  2.58310  3.11857  0.18176      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+      6   2.93438  3.56866  0.11927  3.47136      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+      7   3.41145  0.13282  3.46183  2.81321      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+      8   3.41145  0.13282  3.46183  2.81321      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+      9   3.06969  2.58310  3.11857  0.18176      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     10   3.41145  0.13282  3.46183  2.81321     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     11   0.14440  3.36148  2.78971  3.26137     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     12   3.41145  0.13282  3.46183  2.81321     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     13   3.06969  2.58310  3.11857  0.18176     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     14   2.93438  3.56866  0.11927  3.47136     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     15   3.06969  2.58310  3.11857  0.18176     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     16   2.93438  3.56866  0.11927  3.47136     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     17   2.93438  3.56866  0.11927  3.47136     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     18   3.41145  0.13282  3.46183  2.81321     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     19   0.14440  3.36148  2.78971  3.26137     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     20   0.14440  3.36148  2.78971  3.26137     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     21   2.93438  3.56866  0.11927  3.47136     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     22   0.14440  3.36148  2.78971  3.26137     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     23   3.41145  0.13282  3.46183  2.81321     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     24   0.20303  3.15942  2.36577  3.04868     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     25   0.14440  3.36148  2.78971  3.26137     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     26   3.41145  0.13282  3.46183  2.81321     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     27   3.41145  0.13282  3.46183  2.81321     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     28   3.41145  0.13282  3.46183  2.81321     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     29   2.93438  3.56866  0.11927  3.47136     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     30   3.41145  0.13282  3.46183  2.81321     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     31   3.06969  2.58310  3.11857  0.18176     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     32   0.14440  3.36148  2.78971  3.26137     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     33   2.93438  3.56866  0.11927  3.47136     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     34   0.14440  3.36148  2.78971  3.26137     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     35   3.41145  0.13282  3.46183  2.81321     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     36   3.06969  2.58310  3.11857  0.18176     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     37   3.06969  2.58310  3.11857  0.18176     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     38   0.14440  3.36148  2.78971  3.26137     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     39   0.14440  3.36148  2.78971  3.26137     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     40   2.93438  3.56866  0.11927  3.47136     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     41   3.41145  0.13282  3.46183  2.81321     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     42   0.14440  3.36148  2.78971  3.26137     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     43   3.06969  2.58310  3.11857  0.18176     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     44   0.14440  3.36148  2.78971  3.26137     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00087  4.00087  1.46634  0.26236  1.09861  0.40547
+     45   3.06969  2.58310  3.11857  0.18176     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01882  3.98240        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_ten_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:11:13 2012
+NSEQ  20
+EFFN  3.168945
+CKSUM 1545031769
+STATS LOCAL MSV       -8.1609  0.71932
+STATS LOCAL VITERBI   -7.5217  0.71932
+STATS LOCAL FORWARD   -3.6571  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27594  1.33490  1.31386  1.66672
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  0.00000        *
+      1   0.14875  3.32976  2.76899  3.22669      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      2   3.37482  0.13738  3.42671  2.78637      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      3   0.14875  3.32976  2.76899  3.22669      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      4   3.03791  2.56284  3.08799  0.18707      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      5   2.91196  3.53626  0.12295  3.43565      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      6   0.14875  3.32976  2.76899  3.22669      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      7   3.37482  0.13738  3.42671  2.78637      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      8   3.37482  0.13738  3.42671  2.78637      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      9   3.03791  2.56284  3.08799  0.18707      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     10   3.37482  0.13738  3.42671  2.78637     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     11   0.14875  3.32976  2.76899  3.22669     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     12   3.37482  0.13738  3.42671  2.78637     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     13   2.91196  3.53626  0.12295  3.43565     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     14   2.91196  3.53626  0.12295  3.43565     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     15   2.91196  3.53626  0.12295  3.43565     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     16   2.91196  3.53626  0.12295  3.43565     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     17   2.91196  3.53626  0.12295  3.43565     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     18   3.37482  0.13738  3.42671  2.78637     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     19   0.14875  3.32976  2.76899  3.22669     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     20   2.91196  3.53626  0.12295  3.43565     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     21   2.91196  3.53626  0.12295  3.43565     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     22   0.14875  3.32976  2.76899  3.22669     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     23   3.03791  2.56284  3.08799  0.18707     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     24   2.91196  3.53626  0.12295  3.43565     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     25   0.14875  3.32976  2.76899  3.22669     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     26   3.37482  0.13738  3.42671  2.78637     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     27   3.37482  0.13738  3.42671  2.78637     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     28   3.37482  0.13738  3.42671  2.78637     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     29   2.91196  3.53626  0.12295  3.43565     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     30   3.37482  0.13738  3.42671  2.78637     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     31   3.03791  2.56284  3.08799  0.18707     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     32   0.14875  3.32976  2.76899  3.22669     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     33   2.91196  3.53626  0.12295  3.43565     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     34   0.14875  3.32976  2.76899  3.22669     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     35   3.37482  0.13738  3.42671  2.78637     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     36   3.03791  2.56284  3.08799  0.18707     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     37   3.03791  2.56284  3.08799  0.18707     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     38   0.14875  3.32976  2.76899  3.22669     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     39   0.14875  3.32976  2.76899  3.22669     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     40   2.91196  3.53626  0.12295  3.43565     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     41   3.37482  0.13738  3.42671  2.78637     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     42   0.14875  3.32976  2.76899  3.22669     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     43   3.03791  2.56284  3.08799  0.18707     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     44   0.14875  3.32976  2.76899  3.22669     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     45   3.03791  2.56284  3.08799  0.18707     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01916  3.96442        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_thirteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:11:48 2012
+NSEQ  6
+EFFN  3.184570
+CKSUM 2290620195
+STATS LOCAL MSV       -8.0710  0.71933
+STATS LOCAL VITERBI   -7.6213  0.71933
+STATS LOCAL FORWARD   -3.6362  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22012  1.27066  1.45090  1.66179
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  0.00000        *
+      1   0.14802  3.33501  2.77243  3.23243      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+      2   3.38089  0.13661  3.43253  2.79082      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+      3   3.04316  2.56619  3.09304  0.18618      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+      4   3.04316  2.56619  3.09304  0.18618      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+      5   0.14802  3.33501  2.77243  3.23243      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+      6   0.14802  3.33501  2.77243  3.23243      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+      7   3.38089  0.13661  3.43253  2.79082      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+      8   3.38089  0.13661  3.43253  2.79082      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+      9   3.04316  2.56619  3.09304  0.18618      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     10   3.38089  0.13661  3.43253  2.79082     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     11   0.14802  3.33501  2.77243  3.23243     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     12   3.38089  0.13661  3.43253  2.79082     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     13   2.91569  3.54163  0.12233  3.44157     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     14   2.91569  3.54163  0.12233  3.44157     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     15   2.91569  3.54163  0.12233  3.44157     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     16   2.91569  3.54163  0.12233  3.44157     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     17   2.91569  3.54163  0.12233  3.44157     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     18   3.38089  0.13661  3.43253  2.79082     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     19   0.14802  3.33501  2.77243  3.23243     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     20   0.14802  3.33501  2.77243  3.23243     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     21   2.91569  3.54163  0.12233  3.44157     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     22   0.14802  3.33501  2.77243  3.23243     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     23   3.38089  0.13661  3.43253  2.79082     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     24   2.91569  3.54163  0.12233  3.44157     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     25   0.14802  3.33501  2.77243  3.23243     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     26   3.38089  0.13661  3.43253  2.79082     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     27   3.38089  0.13661  3.43253  2.79082     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     28   3.38089  0.13661  3.43253  2.79082     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     29   2.91569  3.54163  0.12233  3.44157     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     30   3.38089  0.13661  3.43253  2.79082     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     31   3.04316  2.56619  3.09304  0.18618     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     32   0.14802  3.33501  2.77243  3.23243     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     33   2.91569  3.54163  0.12233  3.44157     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     34   0.14802  3.33501  2.77243  3.23243     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     35   3.38089  0.13661  3.43253  2.79082     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     36   3.04316  2.56619  3.09304  0.18618     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     37   3.04316  2.56619  3.09304  0.18618     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     38   0.14802  3.33501  2.77243  3.23243     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     39   0.14802  3.33501  2.77243  3.23243     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     40   2.91569  3.54163  0.12233  3.44157     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     41   3.38089  0.13661  3.43253  2.79082     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     42   0.14802  3.33501  2.77243  3.23243     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     43   3.04316  2.56619  3.09304  0.18618     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     44   0.14802  3.33501  2.77243  3.23243     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98612  3.98612  1.46634  0.26236  1.09861  0.40547
+     45   3.04316  2.56619  3.09304  0.18618     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01910  3.96738        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_thirty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:16:53 2012
+NSEQ  12
+EFFN  3.178711
+CKSUM 1818463421
+STATS LOCAL MSV       -8.1382  0.71931
+STATS LOCAL VITERBI   -7.4802  0.71931
+STATS LOCAL FORWARD   -4.0034  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33851  1.39624  1.25226  1.58778
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  0.00000        *
+      1   3.37862  0.13690  3.43035  2.78916      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      2   3.37862  0.13690  3.43035  2.78916      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      3   0.14829  3.33304  2.77114  3.23028      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      4   3.37862  0.13690  3.43035  2.78916      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      5   3.04119  2.56493  3.09115  0.18651      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      6   2.91430  3.53962  0.12257  3.43936      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      7   3.37862  0.13690  3.43035  2.78916      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      8   2.91430  3.53962  0.12257  3.43936      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      9   3.04119  2.56493  3.09115  0.18651      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     10   2.91430  3.53962  0.12257  3.43936     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     11   0.14829  3.33304  2.77114  3.23028     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     12   3.04119  2.56493  3.09115  0.18651     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     13   3.37862  0.13690  3.43035  2.78916     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     14   2.91430  3.53962  0.12257  3.43936     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     15   0.14829  3.33304  2.77114  3.23028     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     16   3.37862  0.13690  3.43035  2.78916     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     17   2.91430  3.53962  0.12257  3.43936     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     18   3.04119  2.56493  3.09115  0.18651     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     19   2.91430  3.53962  0.12257  3.43936     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     20   2.91430  3.53962  0.12257  3.43936     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     21   2.91430  3.53962  0.12257  3.43936     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     22   0.14829  3.33304  2.77114  3.23028     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     23   3.37862  0.13690  3.43035  2.78916     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     24   2.91430  3.53962  0.12257  3.43936     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     25   0.14829  3.33304  2.77114  3.23028     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     26   3.37862  0.13690  3.43035  2.78916     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     27   2.91430  3.53962  0.12257  3.43936     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     28   2.91430  3.53962  0.12257  3.43936     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     29   2.91430  3.53962  0.12257  3.43936     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     30   3.37862  0.13690  3.43035  2.78916     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     31   3.04119  2.56493  3.09115  0.18651     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     32   0.14829  3.33304  2.77114  3.23028     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     33   0.14829  3.33304  2.77114  3.23028     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     34   0.14829  3.33304  2.77114  3.23028     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     35   3.37862  0.13690  3.43035  2.78916     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     36   3.04119  2.56493  3.09115  0.18651     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     37   3.04119  2.56493  3.09115  0.18651     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     38   0.14829  3.33304  2.77114  3.23028     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     39   0.14829  3.33304  2.77114  3.23028     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     40   2.91430  3.53962  0.12257  3.43936     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     41   3.37862  0.13690  3.43035  2.78916     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     42   0.14829  3.33304  2.77114  3.23028     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     43   3.04119  2.56493  3.09115  0.18651     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     44   0.14829  3.33304  2.77114  3.23028     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     45   3.04119  2.56493  3.09115  0.18651     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01913  3.96627        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:09:59 2012
+NSEQ  25
+EFFN  3.225708
+CKSUM 2442280785
+STATS LOCAL MSV       -8.0875  0.71932
+STATS LOCAL VITERBI   -7.6924  0.71932
+STATS LOCAL FORWARD   -4.2101  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27866  1.32691  1.45131  1.50495
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  0.00000        *
+      1   3.05687  2.57493  3.10623  0.18388      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+      2   3.39671  0.13463  3.44770  2.80242      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+      3   0.14613  3.34871  2.78138  3.24740      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+      4   3.05687  2.57493  3.10623  0.18388      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+      5   2.92539  3.55564  0.12073  3.45700      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+      6   0.14613  3.34871  2.78138  3.24740      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+      7   3.39671  0.13463  3.44770  2.80242      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+      8   3.39671  0.13463  3.44770  2.80242      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+      9   3.05687  2.57493  3.10623  0.18388      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     10   3.39671  0.13463  3.44770  2.80242     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     11   0.14613  3.34871  2.78138  3.24740     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     12   3.05687  2.57493  3.10623  0.18388     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     13   3.39671  0.13463  3.44770  2.80242     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     14   2.92539  3.55564  0.12073  3.45700     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     15   2.92539  3.55564  0.12073  3.45700     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     16   2.92539  3.55564  0.12073  3.45700     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     17   2.92539  3.55564  0.12073  3.45700     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     18   3.05687  2.57493  3.10623  0.18388     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     19   0.14613  3.34871  2.78138  3.24740     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     20   2.92539  3.55564  0.12073  3.45700     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     21   2.92539  3.55564  0.12073  3.45700     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     22   0.14613  3.34871  2.78138  3.24740     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     23   3.39671  0.13463  3.44770  2.80242     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     24   0.14613  3.34871  2.78138  3.24740     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     25   0.14613  3.34871  2.78138  3.24740     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     26   3.39671  0.13463  3.44770  2.80242     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     27   3.39671  0.13463  3.44770  2.80242     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     28   3.39671  0.13463  3.44770  2.80242     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     29   2.92539  3.55564  0.12073  3.45700     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     30   3.39671  0.13463  3.44770  2.80242     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     31   3.05687  2.57493  3.10623  0.18388     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     32   0.14613  3.34871  2.78138  3.24740     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     33   2.92539  3.55564  0.12073  3.45700     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     34   0.14613  3.34871  2.78138  3.24740     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     35   3.39671  0.13463  3.44770  2.80242     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     36   3.05687  2.57493  3.10623  0.18388     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     37   3.05687  2.57493  3.10623  0.18388     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     38   0.14613  3.34871  2.78138  3.24740     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     39   0.14613  3.34871  2.78138  3.24740     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     40   2.92539  3.55564  0.12073  3.45700     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     41   3.39671  0.13463  3.44770  2.80242     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     42   0.14613  3.34871  2.78138  3.24740     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     43   3.05687  2.57493  3.10623  0.18388     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     44   0.14613  3.34871  2.78138  3.24740     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99373  3.99373  1.46634  0.26236  1.09861  0.40547
+     45   3.05687  2.57493  3.10623  0.18388     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01896  3.97513        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_twelve_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:11:37 2012
+NSEQ  8
+EFFN  3.199219
+CKSUM 978999727
+STATS LOCAL MSV       -8.0581  0.71932
+STATS LOCAL VITERBI   -7.6483  0.71932
+STATS LOCAL FORWARD   -4.0748  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11056  1.40113  1.44532  1.66794
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  0.00000        *
+      1   0.14734  3.33991  2.77563  3.23778      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      2   3.38655  0.13590  3.43796  2.79498      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      3   0.14734  3.33991  2.77563  3.23778      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      4   3.04806  2.56931  3.09775  0.18535      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      5   2.91917  3.54665  0.12176  3.44709      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      6   0.14734  3.33991  2.77563  3.23778      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      7   3.04806  2.56931  3.09775  0.18535      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      8   3.38655  0.13590  3.43796  2.79498      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      9   3.04806  2.56931  3.09775  0.18535      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     10   3.38655  0.13590  3.43796  2.79498     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     11   0.14734  3.33991  2.77563  3.23778     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     12   0.14734  3.33991  2.77563  3.23778     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     13   2.91917  3.54665  0.12176  3.44709     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     14   2.91917  3.54665  0.12176  3.44709     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     15   2.91917  3.54665  0.12176  3.44709     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     16   2.91917  3.54665  0.12176  3.44709     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     17   2.91917  3.54665  0.12176  3.44709     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     18   3.38655  0.13590  3.43796  2.79498     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     19   0.14734  3.33991  2.77563  3.23778     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     20   0.14734  3.33991  2.77563  3.23778     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     21   2.91917  3.54665  0.12176  3.44709     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     22   0.14734  3.33991  2.77563  3.23778     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     23   3.38655  0.13590  3.43796  2.79498     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     24   0.14734  3.33991  2.77563  3.23778     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     25   0.14734  3.33991  2.77563  3.23778     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     26   3.38655  0.13590  3.43796  2.79498     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     27   3.38655  0.13590  3.43796  2.79498     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     28   3.38655  0.13590  3.43796  2.79498     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     29   2.91917  3.54665  0.12176  3.44709     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     30   3.38655  0.13590  3.43796  2.79498     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     31   3.04806  2.56931  3.09775  0.18535     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     32   0.14734  3.33991  2.77563  3.23778     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     33   2.91917  3.54665  0.12176  3.44709     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     34   0.14734  3.33991  2.77563  3.23778     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     35   3.38655  0.13590  3.43796  2.79498     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     36   3.04806  2.56931  3.09775  0.18535     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     37   3.04806  2.56931  3.09775  0.18535     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     38   0.14734  3.33991  2.77563  3.23778     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     39   0.14734  3.33991  2.77563  3.23778     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     40   2.91917  3.54665  0.12176  3.44709     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     41   3.38655  0.13590  3.43796  2.79498     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     42   0.14734  3.33991  2.77563  3.23778     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     43   3.04806  2.56931  3.09775  0.18535     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     44   0.14734  3.33991  2.77563  3.23778     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     45   3.04806  2.56931  3.09775  0.18535     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01905  3.97014        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_twenty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:13:13 2012
+NSEQ  69
+EFFN  3.423889
+CKSUM 3251613800
+STATS LOCAL MSV       -7.1348  0.71932
+STATS LOCAL VITERBI   -7.5611  0.71932
+STATS LOCAL FORWARD   -3.9801  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.53531  1.56822  1.24279  1.24613
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  0.00000        *
+      1   1.67803  0.68418  1.77706  1.96882      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+      2   0.13776  3.41212  2.82258  3.31682      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+      3   3.12089  2.61565  3.16780  0.17356      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+      4   3.12089  2.61565  3.16780  0.17356      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+      5   2.96962  3.61999  0.11369  3.52803      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+      6   2.96962  3.61999  0.11369  3.52803      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+      7   3.46979  0.12592  3.51768  2.85562      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+      8   3.46979  0.12592  3.51768  2.85562      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+      9   3.12089  2.61565  3.16780  0.17356      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     10   3.46979  0.12592  3.51768  2.85562     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     11   0.13776  3.41212  2.82258  3.31682     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     12   2.96962  3.61999  0.11369  3.52803     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     13   3.12089  2.61565  3.16780  0.17356     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     14   3.12089  2.61565  3.16780  0.17356     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     15   2.96962  3.61999  0.11369  3.52803     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     16   2.96962  3.61999  0.11369  3.52803     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     17   2.96962  3.61999  0.11369  3.52803     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     18   3.12089  2.61565  3.16780  0.17356     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     19   2.96962  3.61999  0.11369  3.52803     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     20   2.96962  3.61999  0.11369  3.52803     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     21   2.96962  3.61999  0.11369  3.52803     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     22   0.13776  3.41212  2.82258  3.31682     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     23   3.12089  2.61565  3.16780  0.17356     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     24   2.96962  3.61999  0.11369  3.52803     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     25   0.13776  3.41212  2.82258  3.31682     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     26   3.46979  0.12592  3.51768  2.85562     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     27   3.46979  0.12592  3.51768  2.85562     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     28   3.46979  0.12592  3.51768  2.85562     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     29   2.96962  3.61999  0.11369  3.52803     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     30   3.46979  0.12592  3.51768  2.85562     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     31   3.12089  2.61565  3.16780  0.17356     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     32   3.12089  2.61565  3.16780  0.17356     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     33   2.96962  3.61999  0.11369  3.52803     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     34   0.13776  3.41212  2.82258  3.31682     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     35   3.12089  2.61565  3.16780  0.17356     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     36   3.12089  2.61565  3.16780  0.17356     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     37   3.12089  2.61565  3.16780  0.17356     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     38   0.13776  3.41212  2.82258  3.31682     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     39   0.13776  3.41212  2.82258  3.31682     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     40   2.96962  3.61999  0.11369  3.52803     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     41   3.46979  0.12592  3.51768  2.85562     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     42   0.13776  3.41212  2.82258  3.31682     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     43   3.12089  2.61565  3.16780  0.17356     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     44   0.13776  3.41212  2.82258  3.31682     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02961  4.02961  1.46634  0.26236  1.09861  0.40547
+     45   3.12089  2.61565  3.16780  0.17356     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01827  4.01167        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_twentyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:16:25 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 560215678
+STATS LOCAL MSV       -7.3978  0.72836
+STATS LOCAL VITERBI   -8.2232  0.72836
+STATS LOCAL FORWARD   -3.2345  0.72836
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34337  1.39360  1.49698  1.32032
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   0.23862  2.84929  2.43386  2.70756     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.53331  3.02441  0.20344  2.88069     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_twentyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:15:58 2012
+NSEQ  71
+EFFN  3.384460
+CKSUM 2479778242
+STATS LOCAL MSV       -7.4352  0.71933
+STATS LOCAL VITERBI   -7.7391  0.71933
+STATS LOCAL FORWARD   -3.8809  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27754  1.33244  1.60292  1.36205
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  0.00000        *
+      1   2.56339  0.36286  2.05390  2.31226      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+      2   3.10841  2.60773  3.15581  0.17552      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+      3   3.10841  2.60773  3.15581  0.17552      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+      4   3.10841  2.60773  3.15581  0.17552      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+      5   0.13934  3.39984  2.81462  3.30336      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+      6   0.13934  3.39984  2.81462  3.30336      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+      7   3.10841  2.60773  3.15581  0.17552      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+      8   3.45565  0.12755  3.50415  2.84538      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+      9   3.10841  2.60773  3.15581  0.17552      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     10   3.45565  0.12755  3.50415  2.84538     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     11   0.13934  3.39984  2.81462  3.30336     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     12   0.13934  3.39984  2.81462  3.30336     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     13   3.45565  0.12755  3.50415  2.84538     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     14   3.10841  2.60773  3.15581  0.17552     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     15   3.45565  0.12755  3.50415  2.84538     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     16   2.96113  3.60758  0.11501  3.51432     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     17   2.96113  3.60758  0.11501  3.51432     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     18   2.96113  3.60758  0.11501  3.51432     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     19   3.10841  2.60773  3.15581  0.17552     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     20   0.16860  3.29082  2.56771  3.18887     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     21   2.96113  3.60758  0.11501  3.51432     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     22   2.96113  3.60758  0.11501  3.51432     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     23   0.13934  3.39984  2.81462  3.30336     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     24   3.45565  0.12755  3.50415  2.84538     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     25   3.10841  2.60773  3.15581  0.17552     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     26   0.13934  3.39984  2.81462  3.30336     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     27   3.45565  0.12755  3.50415  2.84538     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     28   3.45565  0.12755  3.50415  2.84538     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     29   3.45565  0.12755  3.50415  2.84538     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     30   2.96113  3.60758  0.11501  3.51432     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     31   3.45565  0.12755  3.50415  2.84538     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     32   3.10841  2.60773  3.15581  0.17552     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     33   2.96113  3.60758  0.11501  3.51432     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     34   0.13934  3.39984  2.81462  3.30336     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     35   0.13934  3.39984  2.81462  3.30336     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     36   3.45565  0.12755  3.50415  2.84538     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     37   3.10841  2.60773  3.15581  0.17552     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     38   3.10841  2.60773  3.15581  0.17552     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     39   0.13934  3.39984  2.81462  3.30336     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     40   0.13934  3.39984  2.81462  3.30336     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     41   2.96113  3.60758  0.11501  3.51432     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     42   3.45565  0.12755  3.50415  2.84538     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     43   0.13934  3.39984  2.81462  3.30336     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     44   3.10841  2.60773  3.15581  0.17552     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03647  4.02257  4.02257  1.46634  0.26236  1.09861  0.40547
+     45   0.13934  3.39984  2.81462  3.30336     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01840  4.00450        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_twentyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:15:51 2012
+NSEQ  65
+EFFN  3.265076
+CKSUM 3550671071
+STATS LOCAL MSV       -7.9381  0.71931
+STATS LOCAL VITERBI   -7.5951  0.71931
+STATS LOCAL FORWARD   -3.9440  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28066  1.26069  1.61345  1.42926
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  0.00000        *
+      1   3.06985  2.58320  3.11872  0.18173      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+      2   3.06985  2.58320  3.11872  0.18173      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+      3   3.06985  2.58320  3.11872  0.18173      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+      4   0.14438  3.36164  2.78981  3.26155      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+      5   3.41164  0.13280  3.46200  2.81334      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+      6   0.14438  3.36164  2.78981  3.26155      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+      7   3.41164  0.13280  3.46200  2.81334      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+      8   3.41164  0.13280  3.46200  2.81334      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+      9   3.06985  2.58320  3.11872  0.18173      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     10   3.41164  0.13280  3.46200  2.81334     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     11   0.14438  3.36164  2.78981  3.26155     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     12   0.14438  3.36164  2.78981  3.26155     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     13   3.41164  0.13280  3.46200  2.81334     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     14   3.06985  2.58320  3.11872  0.18173     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     15   3.41164  0.13280  3.46200  2.81334     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     16   2.93449  3.56883  0.11925  3.47154     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     17   2.93449  3.56883  0.11925  3.47154     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     18   2.93449  3.56883  0.11925  3.47154     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     19   3.06985  2.58320  3.11872  0.18173     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     20   0.14438  3.36164  2.78981  3.26155     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     21   2.93449  3.56883  0.11925  3.47154     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     22   2.93449  3.56883  0.11925  3.47154     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     23   0.14438  3.36164  2.78981  3.26155     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     24   3.41164  0.13280  3.46200  2.81334     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     25   3.06985  2.58320  3.11872  0.18173     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     26   0.14438  3.36164  2.78981  3.26155     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     27   3.41164  0.13280  3.46200  2.81334     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     28   3.41164  0.13280  3.46200  2.81334     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     29   3.41164  0.13280  3.46200  2.81334     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     30   2.93449  3.56883  0.11925  3.47154     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     31   3.41164  0.13280  3.46200  2.81334     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     32   3.06985  2.58320  3.11872  0.18173     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     33   2.93449  3.56883  0.11925  3.47154     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     34   0.14438  3.36164  2.78981  3.26155     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     35   0.14438  3.36164  2.78981  3.26155     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     36   3.41164  0.13280  3.46200  2.81334     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     37   3.06985  2.58320  3.11872  0.18173     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     38   3.06985  2.58320  3.11872  0.18173     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     39   0.14438  3.36164  2.78981  3.26155     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     40   0.14438  3.36164  2.78981  3.26155     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     41   2.93449  3.56883  0.11925  3.47154     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     42   3.41164  0.13280  3.46200  2.81334     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     43   0.14438  3.36164  2.78981  3.26155     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     44   3.06985  2.58320  3.11872  0.18173     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00096  4.00096  1.46634  0.26236  1.09861  0.40547
+     45   0.14438  3.36164  2.78981  3.26155     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01881  3.98250        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_twentynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:16:43 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1938843588
+STATS LOCAL MSV       -7.3387  0.72901
+STATS LOCAL VITERBI   -8.2174  0.72901
+STATS LOCAL FORWARD   -3.3436  0.72901
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.32189  1.27998  1.61487  1.36098
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.92825  2.28391  0.95698  2.13014     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_twentyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:13:22 2012
+NSEQ  13
+EFFN  3.399170
+CKSUM 3201700513
+STATS LOCAL MSV       -7.2471  0.71931
+STATS LOCAL VITERBI   -7.5423  0.71931
+STATS LOCAL FORWARD   -4.0161  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54760  1.54661  1.31368  1.18599
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  0.00000        *
+      1   3.46095  0.12694  3.50922  2.84922      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+      2   0.13874  3.40444  2.81761  3.30841      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+      3   3.11308  2.61070  3.16030  0.17478      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+      4   3.11308  2.61070  3.16030  0.17478      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+      5   2.96432  3.61223  0.11452  3.51946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+      6   2.96432  3.61223  0.11452  3.51946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+      7   3.46095  0.12694  3.50922  2.84922      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+      8   3.46095  0.12694  3.50922  2.84922      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+      9   3.11308  2.61070  3.16030  0.17478      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     10   3.46095  0.12694  3.50922  2.84922     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     11   0.13874  3.40444  2.81761  3.30841     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     12   2.96432  3.61223  0.11452  3.51946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     13   3.11308  2.61070  3.16030  0.17478     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     14   3.11308  2.61070  3.16030  0.17478     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     15   2.96432  3.61223  0.11452  3.51946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     16   2.96432  3.61223  0.11452  3.51946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     17   2.96432  3.61223  0.11452  3.51946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     18   3.11308  2.61070  3.16030  0.17478     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     19   2.96432  3.61223  0.11452  3.51946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     20   2.96432  3.61223  0.11452  3.51946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     21   2.96432  3.61223  0.11452  3.51946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     22   0.13874  3.40444  2.81761  3.30841     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     23   3.11308  2.61070  3.16030  0.17478     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     24   3.11308  2.61070  3.16030  0.17478     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     25   0.13874  3.40444  2.81761  3.30841     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     26   3.46095  0.12694  3.50922  2.84922     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     27   2.69229  0.41115  2.76121  1.57903     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     28   3.46095  0.12694  3.50922  2.84922     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     29   2.96432  3.61223  0.11452  3.51946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     30   3.46095  0.12694  3.50922  2.84922     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     31   3.11308  2.61070  3.16030  0.17478     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     32   3.11308  2.61070  3.16030  0.17478     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     33   2.96432  3.61223  0.11452  3.51946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     34   0.13874  3.40444  2.81761  3.30841     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     35   3.11308  2.61070  3.16030  0.17478     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     36   3.11308  2.61070  3.16030  0.17478     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     37   3.11308  2.61070  3.16030  0.17478     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     38   0.13874  3.40444  2.81761  3.30841     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     39   0.13874  3.40444  2.81761  3.30841     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     40   2.96432  3.61223  0.11452  3.51946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     41   3.46095  0.12694  3.50922  2.84922     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     42   0.13874  3.40444  2.81761  3.30841     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     43   3.11308  2.61070  3.16030  0.17478     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     44   0.13874  3.40444  2.81761  3.30841     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     45   3.11308  2.61070  3.16030  0.17478     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01835  4.00718        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_twentyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:16:15 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2602341775
+STATS LOCAL MSV       -7.2230  0.72782
+STATS LOCAL VITERBI   -8.3128  0.72782
+STATS LOCAL FORWARD   -3.4222  0.72782
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29269  1.29446  1.43313  1.54712
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_twentysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:16:09 2012
+NSEQ  9
+EFFN  3.247559
+CKSUM 4074190765
+STATS LOCAL MSV       -7.9969  0.71931
+STATS LOCAL VITERBI   -7.5751  0.71931
+STATS LOCAL FORWARD   -4.0466  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22011  1.26395  1.61119  1.50230
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  0.00000        *
+      1   0.14515  3.35591  2.78608  3.25528      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+      2   3.06409  2.57953  3.11318  0.18268      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+      3   3.06409  2.57953  3.11318  0.18268      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+      4   0.14515  3.35591  2.78608  3.25528      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+      5   3.40502  0.13361  3.45566  2.80851      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+      6   0.14515  3.35591  2.78608  3.25528      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+      7   3.40502  0.13361  3.45566  2.80851      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+      8   3.40502  0.13361  3.45566  2.80851      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+      9   3.06409  2.57953  3.11318  0.18268      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     10   3.40502  0.13361  3.45566  2.80851     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     11   0.14515  3.35591  2.78608  3.25528     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     12   0.14515  3.35591  2.78608  3.25528     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     13   3.40502  0.13361  3.45566  2.80851     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     14   3.06409  2.57953  3.11318  0.18268     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     15   3.40502  0.13361  3.45566  2.80851     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     16   2.93046  3.56298  0.11991  3.46510     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     17   2.93046  3.56298  0.11991  3.46510     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     18   2.93046  3.56298  0.11991  3.46510     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     19   3.06409  2.57953  3.11318  0.18268     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     20   0.14515  3.35591  2.78608  3.25528     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     21   2.93046  3.56298  0.11991  3.46510     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     22   2.93046  3.56298  0.11991  3.46510     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     23   0.14515  3.35591  2.78608  3.25528     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     24   3.40502  0.13361  3.45566  2.80851     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     25   3.06409  2.57953  3.11318  0.18268     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     26   0.14515  3.35591  2.78608  3.25528     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     27   3.40502  0.13361  3.45566  2.80851     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     28   2.93046  3.56298  0.11991  3.46510     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     29   3.40502  0.13361  3.45566  2.80851     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     30   3.40502  0.13361  3.45566  2.80851     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     31   3.40502  0.13361  3.45566  2.80851     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     32   3.06409  2.57953  3.11318  0.18268     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     33   2.93046  3.56298  0.11991  3.46510     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     34   0.14515  3.35591  2.78608  3.25528     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     35   0.14515  3.35591  2.78608  3.25528     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     36   3.40502  0.13361  3.45566  2.80851     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     37   3.06409  2.57953  3.11318  0.18268     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     38   3.06409  2.57953  3.11318  0.18268     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     39   0.14515  3.35591  2.78608  3.25528     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     40   0.14515  3.35591  2.78608  3.25528     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     41   2.93046  3.56298  0.11991  3.46510     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     42   3.40502  0.13361  3.45566  2.80851     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     43   0.14515  3.35591  2.78608  3.25528     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     44   3.06409  2.57953  3.11318  0.18268     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     45   0.14515  3.35591  2.78608  3.25528     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97923        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_twentythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:15:37 2012
+NSEQ  9
+EFFN  3.221191
+CKSUM 479055599
+STATS LOCAL MSV       -7.9488  0.71932
+STATS LOCAL VITERBI   -7.6115  0.71932
+STATS LOCAL FORWARD   -3.8539  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34268  1.26560  1.45107  1.50299
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  0.00000        *
+      1   3.05537  2.57398  3.10479  0.18413      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+      2   2.92433  3.55411  0.12091  3.45532      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+      3   2.92433  3.55411  0.12091  3.45532      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+      4   3.05537  2.57398  3.10479  0.18413      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+      5   2.92433  3.55411  0.12091  3.45532      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+      6   0.14634  3.34721  2.78040  3.24577      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+      7   3.39499  0.13485  3.44604  2.80116      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+      8   3.39499  0.13485  3.44604  2.80116      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+      9   3.05537  2.57398  3.10479  0.18413      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     10   3.39499  0.13485  3.44604  2.80116     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     11   0.14634  3.34721  2.78040  3.24577     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     12   2.92433  3.55411  0.12091  3.45532     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     13   3.05537  2.57398  3.10479  0.18413     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     14   3.39499  0.13485  3.44604  2.80116     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     15   3.39499  0.13485  3.44604  2.80116     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     16   3.05537  2.57398  3.10479  0.18413     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     17   2.92433  3.55411  0.12091  3.45532     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     18   3.39499  0.13485  3.44604  2.80116     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     19   0.14634  3.34721  2.78040  3.24577     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     20   0.14634  3.34721  2.78040  3.24577     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     21   2.92433  3.55411  0.12091  3.45532     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     22   0.14634  3.34721  2.78040  3.24577     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     23   3.39499  0.13485  3.44604  2.80116     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     24   2.92433  3.55411  0.12091  3.45532     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     25   0.14634  3.34721  2.78040  3.24577     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     26   3.39499  0.13485  3.44604  2.80116     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     27   3.39499  0.13485  3.44604  2.80116     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     28   3.39499  0.13485  3.44604  2.80116     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     29   2.92433  3.55411  0.12091  3.45532     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     30   3.39499  0.13485  3.44604  2.80116     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     31   3.05537  2.57398  3.10479  0.18413     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     32   0.14634  3.34721  2.78040  3.24577     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     33   2.92433  3.55411  0.12091  3.45532     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     34   0.14634  3.34721  2.78040  3.24577     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     35   3.39499  0.13485  3.44604  2.80116     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     36   3.05537  2.57398  3.10479  0.18413     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     37   3.05537  2.57398  3.10479  0.18413     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     38   0.14634  3.34721  2.78040  3.24577     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     39   0.14634  3.34721  2.78040  3.24577     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     40   2.92433  3.55411  0.12091  3.45532     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     41   3.39499  0.13485  3.44604  2.80116     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     42   0.14634  3.34721  2.78040  3.24577     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     43   3.05537  2.57398  3.10479  0.18413     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     44   0.14634  3.34721  2.78040  3.24577     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03759  3.99290  3.99290  1.46634  0.26236  1.09861  0.40547
+     45   3.05537  2.57398  3.10479  0.18413     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01897  3.97428        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_twentytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:15:29 2012
+NSEQ  31
+EFFN  3.371704
+CKSUM 635857156
+STATS LOCAL MSV       -7.4338  0.71933
+STATS LOCAL VITERBI   -7.4746  0.71933
+STATS LOCAL FORWARD   -4.1935  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47276  1.43783  1.38054  1.26648
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  0.00000        *
+      1   3.45104  0.12809  3.49973  2.84203      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+      2   0.13986  3.39583  2.81203  3.29897      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+      3   3.10435  2.60515  3.15190  0.17616      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+      4   3.10435  2.60515  3.15190  0.17616      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+      5   2.95836  3.60353  0.11545  3.50984      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+      6   2.95836  3.60353  0.11545  3.50984      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+      7   3.45104  0.12809  3.49973  2.84203      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+      8   3.45104  0.12809  3.49973  2.84203      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+      9   3.10435  2.60515  3.15190  0.17616      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     10   3.45104  0.12809  3.49973  2.84203     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     11   0.13986  3.39583  2.81203  3.29897     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     12   2.95836  3.60353  0.11545  3.50984     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     13   3.10435  2.60515  3.15190  0.17616     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     14   3.45104  0.12809  3.49973  2.84203     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     15   2.95836  3.60353  0.11545  3.50984     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     16   2.95836  3.60353  0.11545  3.50984     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     17   0.13986  3.39583  2.81203  3.29897     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     18   2.55845  1.45978  2.62539  0.48147     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     19   2.95836  3.60353  0.11545  3.50984     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     20   2.95836  3.60353  0.11545  3.50984     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     21   2.95836  3.60353  0.11545  3.50984     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     22   0.13986  3.39583  2.81203  3.29897     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     23   3.10435  2.60515  3.15190  0.17616     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     24   3.10435  2.60515  3.15190  0.17616     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     25   0.13986  3.39583  2.81203  3.29897     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     26   3.45104  0.12809  3.49973  2.84203     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     27   3.45104  0.12809  3.49973  2.84203     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     28   3.45104  0.12809  3.49973  2.84203     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     29   2.95836  3.60353  0.11545  3.50984     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     30   3.45104  0.12809  3.49973  2.84203     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     31   3.10435  2.60515  3.15190  0.17616     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     32   3.10435  2.60515  3.15190  0.17616     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     33   2.95836  3.60353  0.11545  3.50984     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     34   0.13986  3.39583  2.81203  3.29897     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     35   3.10435  2.60515  3.15190  0.17616     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     36   3.10435  2.60515  3.15190  0.17616     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     37   3.10435  2.60515  3.15190  0.17616     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     38   0.13986  3.39583  2.81203  3.29897     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     39   0.13986  3.39583  2.81203  3.29897     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     40   2.95836  3.60353  0.11545  3.50984     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     41   3.45104  0.12809  3.49973  2.84203     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     42   0.13986  3.39583  2.81203  3.29897     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     43   3.10435  2.60515  3.15190  0.17616     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     44   0.13986  3.39583  2.81203  3.29897     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02029  4.02029  1.46634  0.26236  1.09861  0.40547
+     45   3.10435  2.60515  3.15190  0.17616     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01844  4.00218        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Tu_4_LSU_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 11 22:09:31 2012
+NSEQ  34
+EFFN  3.299561
+CKSUM 31388989
+STATS LOCAL MSV       -8.1379  0.71933
+STATS LOCAL VITERBI   -7.6142  0.71933
+STATS LOCAL FORWARD   -4.0326  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27555  1.38242  1.44924  1.44815
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  0.00000        *
+      1   2.69990  1.77986  2.76204  0.35530      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+      2   3.42454  0.13123  3.47436  2.82276      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+      3   0.14288  3.37283  2.79710  3.27379      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+      4   3.08112  2.59037  3.12956  0.17989      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+      5   2.94234  3.58021  0.11799  3.48410      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+      6   0.14288  3.37283  2.79710  3.27379      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+      7   3.42454  0.13123  3.47436  2.82276      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+      8   3.42454  0.13123  3.47436  2.82276      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+      9   3.08112  2.59037  3.12956  0.17989      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     10   3.42454  0.13123  3.47436  2.82276     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     11   0.14288  3.37283  2.79710  3.27379     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     12   3.08112  2.59037  3.12956  0.17989     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     13   3.08112  2.59037  3.12956  0.17989     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     14   2.94234  3.58021  0.11799  3.48410     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     15   2.94234  3.58021  0.11799  3.48410     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     16   2.94234  3.58021  0.11799  3.48410     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     17   2.94234  3.58021  0.11799  3.48410     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     18   3.08112  2.59037  3.12956  0.17989     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     19   0.14288  3.37283  2.79710  3.27379     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     20   2.94234  3.58021  0.11799  3.48410     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     21   2.94234  3.58021  0.11799  3.48410     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     22   0.14288  3.37283  2.79710  3.27379     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     23   3.42454  0.13123  3.47436  2.82276     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     24   0.14288  3.37283  2.79710  3.27379     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     25   0.14288  3.37283  2.79710  3.27379     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     26   3.42454  0.13123  3.47436  2.82276     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     27   3.42454  0.13123  3.47436  2.82276     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     28   3.42454  0.13123  3.47436  2.82276     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     29   2.94234  3.58021  0.11799  3.48410     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     30   3.42454  0.13123  3.47436  2.82276     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     31   3.08112  2.59037  3.12956  0.17989     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     32   0.14288  3.37283  2.79710  3.27379     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     33   2.94234  3.58021  0.11799  3.48410     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     34   0.14288  3.37283  2.79710  3.27379     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     35   3.42454  0.13123  3.47436  2.82276     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     36   3.08112  2.59037  3.12956  0.17989     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     37   3.08112  2.59037  3.12956  0.17989     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     38   0.14288  3.37283  2.79710  3.27379     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     39   0.14288  3.37283  2.79710  3.27379     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     40   2.94234  3.58021  0.11799  3.48410     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     41   3.42454  0.13123  3.47436  2.82276     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     42   0.14288  3.37283  2.79710  3.27379     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     43   3.08112  2.59037  3.12956  0.17989     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     44   0.14288  3.37283  2.79710  3.27379     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     45   3.08112  2.59037  3.12956  0.17989     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01869  3.98890        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:38:49 2012
+NSEQ  61
+EFFN  3.391785
+CKSUM 2249119243
+STATS LOCAL MSV       -7.5017  0.71933
+STATS LOCAL VITERBI   -7.5245  0.71933
+STATS LOCAL FORWARD   -4.1611  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21410  1.45577  1.51403  1.38717
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  0.00000        *
+      1   2.96272  3.60990  0.11477  3.51688      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+      2   3.03732  2.42941  3.08721  0.20050      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+      3   3.11074  2.60921  3.15805  0.17515      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+      4   3.11074  2.60921  3.15805  0.17515      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+      5   2.96272  3.60990  0.11477  3.51688      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+      6   0.13904  3.40213  2.81611  3.30588      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+      7   3.45829  0.12724  3.50668  2.84730      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+      8   3.45829  0.12724  3.50668  2.84730      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+      9   3.11074  2.60921  3.15805  0.17515      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     10   3.45829  0.12724  3.50668  2.84730     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     11   0.13904  3.40213  2.81611  3.30588     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     12   0.13904  3.40213  2.81611  3.30588     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     13   0.13904  3.40213  2.81611  3.30588     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     14   3.11074  2.60921  3.15805  0.17515     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     15   3.45829  0.12724  3.50668  2.84730     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     16   0.13904  3.40213  2.81611  3.30588     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     17   2.96272  3.60990  0.11477  3.51688     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     18   2.96272  3.60990  0.11477  3.51688     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     19   3.11074  2.60921  3.15805  0.17515     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     20   0.13904  3.40213  2.81611  3.30588     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     21   2.96272  3.60990  0.11477  3.51688     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     22   2.96272  3.60990  0.11477  3.51688     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     23   0.17144  3.28209  2.54592  3.17964     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     24   2.08701  2.25160  2.07788  0.43770     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     25   3.11074  2.60921  3.15805  0.17515     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     26   0.13904  3.40213  2.81611  3.30588     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     27   3.45829  0.12724  3.50668  2.84730     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     28   3.45829  0.12724  3.50668  2.84730     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     29   3.45829  0.12724  3.50668  2.84730     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     30   2.96272  3.60990  0.11477  3.51688     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     31   3.45829  0.12724  3.50668  2.84730     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     32   3.11074  2.60921  3.15805  0.17515     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     33   2.96272  3.60990  0.11477  3.51688     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     34   0.13904  3.40213  2.81611  3.30588     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     35   0.13904  3.40213  2.81611  3.30588     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     36   3.45829  0.12724  3.50668  2.84730     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     37   3.11074  2.60921  3.15805  0.17515     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     38   3.11074  2.60921  3.15805  0.17515     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     39   0.13904  3.40213  2.81611  3.30588     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     40   0.13904  3.40213  2.81611  3.30588     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     41   2.96272  3.60990  0.11477  3.51688     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     42   3.45829  0.12724  3.50668  2.84730     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     43   0.13904  3.40213  2.81611  3.30588     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     44   3.11074  2.60921  3.15805  0.17515     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02388  4.02388  1.46634  0.26236  1.09861  0.40547
+     45   0.13904  3.40213  2.81611  3.30588     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01838  4.00584        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_eighteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:41:40 2012
+NSEQ  4
+EFFN  3.222656
+CKSUM 1886630756
+STATS LOCAL MSV       -7.8488  0.71933
+STATS LOCAL VITERBI   -7.6559  0.71933
+STATS LOCAL FORWARD   -4.1786  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27742  1.32751  1.45122  1.50588
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  0.00000        *
+      1   0.14627  3.34770  2.78072  3.24630      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      2   3.05586  2.57429  3.10526  0.18405      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      3   3.39555  0.13478  3.44658  2.80157      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      4   3.05586  2.57429  3.10526  0.18405      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      5   2.92468  3.55461  0.12085  3.45586      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      6   0.14627  3.34770  2.78072  3.24630      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      7   3.39555  0.13478  3.44658  2.80157      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      8   3.39555  0.13478  3.44658  2.80157      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      9   3.05586  2.57429  3.10526  0.18405      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     10   3.39555  0.13478  3.44658  2.80157     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     11   2.92468  3.55461  0.12085  3.45586     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     12   0.14627  3.34770  2.78072  3.24630     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     13   0.14627  3.34770  2.78072  3.24630     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     14   3.05586  2.57429  3.10526  0.18405     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     15   3.39555  0.13478  3.44658  2.80157     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     16   0.14627  3.34770  2.78072  3.24630     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     17   2.92468  3.55461  0.12085  3.45586     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     18   2.92468  3.55461  0.12085  3.45586     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     19   3.05586  2.57429  3.10526  0.18405     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     20   2.92468  3.55461  0.12085  3.45586     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     21   2.92468  3.55461  0.12085  3.45586     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     22   2.92468  3.55461  0.12085  3.45586     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     23   0.14627  3.34770  2.78072  3.24630     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     24   3.39555  0.13478  3.44658  2.80157     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     25   3.05586  2.57429  3.10526  0.18405     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     26   0.14627  3.34770  2.78072  3.24630     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     27   3.39555  0.13478  3.44658  2.80157     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     28   3.39555  0.13478  3.44658  2.80157     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     29   3.39555  0.13478  3.44658  2.80157     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     30   2.92468  3.55461  0.12085  3.45586     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     31   3.39555  0.13478  3.44658  2.80157     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     32   3.05586  2.57429  3.10526  0.18405     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     33   2.92468  3.55461  0.12085  3.45586     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     34   0.14627  3.34770  2.78072  3.24630     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     35   0.14627  3.34770  2.78072  3.24630     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     36   3.39555  0.13478  3.44658  2.80157     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     37   3.05586  2.57429  3.10526  0.18405     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     38   3.05586  2.57429  3.10526  0.18405     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     39   0.14627  3.34770  2.78072  3.24630     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     40   0.14627  3.34770  2.78072  3.24630     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     41   2.92468  3.55461  0.12085  3.45586     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     42   3.39555  0.13478  3.44658  2.80157     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     43   0.14627  3.34770  2.78072  3.24630     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     44   3.05586  2.57429  3.10526  0.18405     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     45   0.14627  3.34770  2.78072  3.24630     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01897  3.97456        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_elevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:39:41 2012
+NSEQ  4
+EFFN  3.527344
+CKSUM 3771865796
+STATS LOCAL MSV       -7.6839  0.71933
+STATS LOCAL VITERBI   -7.5131  0.71933
+STATS LOCAL FORWARD   -4.3120  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11132  1.38574  1.62586  1.49613
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  0.00000        *
+      1   0.13381  3.44360  2.84291  3.35134      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+      2   3.15301  2.63604  3.19868  0.16864      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+      3   3.15301  2.63604  3.19868  0.16864      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+      4   3.15301  2.63604  3.19868  0.16864      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+      5   2.99121  3.65163  0.11040  3.56302      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+      6   0.13381  3.44360  2.84291  3.35134      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+      7   3.50594  0.12185  3.55225  2.88172      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+      8   3.50594  0.12185  3.55225  2.88172      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+      9   3.15301  2.63604  3.19868  0.16864      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     10   3.50594  0.12185  3.55225  2.88172     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     11   0.13381  3.44360  2.84291  3.35134     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     12   0.13381  3.44360  2.84291  3.35134     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     13   0.13381  3.44360  2.84291  3.35134     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     14   3.15301  2.63604  3.19868  0.16864     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     15   3.50594  0.12185  3.55225  2.88172     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     16   0.13381  3.44360  2.84291  3.35134     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     17   2.99121  3.65163  0.11040  3.56302     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     18   2.99121  3.65163  0.11040  3.56302     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     19   3.15301  2.63604  3.19868  0.16864     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     20   0.13381  3.44360  2.84291  3.35134     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     21   0.85336  2.54892  0.90251  2.40461     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     22   2.99121  3.65163  0.11040  3.56302     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     23   0.85336  2.54892  0.90251  2.40461     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     24   0.13381  3.44360  2.84291  3.35134     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     25   3.50594  0.12185  3.55225  2.88172     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     26   0.13381  3.44360  2.84291  3.35134     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     27   3.50594  0.12185  3.55225  2.88172     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     28   3.50594  0.12185  3.55225  2.88172     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     29   3.50594  0.12185  3.55225  2.88172     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     30   2.99121  3.65163  0.11040  3.56302     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     31   3.50594  0.12185  3.55225  2.88172     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     32   3.15301  2.63604  3.19868  0.16864     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     33   2.99121  3.65163  0.11040  3.56302     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     34   0.13381  3.44360  2.84291  3.35134     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     35   0.13381  3.44360  2.84291  3.35134     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     36   3.50594  0.12185  3.55225  2.88172     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     37   3.15301  2.63604  3.19868  0.16864     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     38   3.15301  2.63604  3.19868  0.16864     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     39   0.13381  3.44360  2.84291  3.35134     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     40   0.13381  3.44360  2.84291  3.35134     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     41   2.99121  3.65163  0.11040  3.56302     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     42   3.50594  0.12185  3.55225  2.88172     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     43   0.13381  3.44360  2.84291  3.35134     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     44   3.15301  2.63604  3.19868  0.16864     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     45   0.13381  3.44360  2.84291  3.35134     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01793  4.03022        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_elevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:39:48 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4034610785
+STATS LOCAL MSV       -7.5666  0.72804
+STATS LOCAL VITERBI   -8.1813  0.72804
+STATS LOCAL FORWARD   -3.5779  0.72804
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.14288  1.46639  1.49214  1.48965
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_elevenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:39:55 2012
+NSEQ  4
+EFFN  3.441406
+CKSUM 3714056672
+STATS LOCAL MSV       -7.6157  0.71931
+STATS LOCAL VITERBI   -7.5372  0.71931
+STATS LOCAL FORWARD   -4.2543  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.13779  1.45510  1.66122  1.36184
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  0.00000        *
+      1   3.12639  2.61915  3.17309  0.17271      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+      2   3.12639  2.61915  3.17309  0.17271      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+      3   3.12639  2.61915  3.17309  0.17271      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+      4   3.12639  2.61915  3.17309  0.17271      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+      5   2.97335  3.62543  0.11312  3.53405      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+      6   0.13707  3.41753  2.82608  3.32275      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+      7   3.47600  0.12521  3.52362  2.86012      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+      8   3.47600  0.12521  3.52362  2.86012      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+      9   3.12639  2.61915  3.17309  0.17271      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     10   3.47600  0.12521  3.52362  2.86012     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     11   0.13707  3.41753  2.82608  3.32275     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     12   0.13707  3.41753  2.82608  3.32275     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     13   0.13707  3.41753  2.82608  3.32275     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     14   3.12639  2.61915  3.17309  0.17271     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     15   3.47600  0.12521  3.52362  2.86012     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     16   0.13707  3.41753  2.82608  3.32275     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     17   2.97335  3.62543  0.11312  3.53405     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     18   2.97335  3.62543  0.11312  3.53405     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     19   3.12639  2.61915  3.17309  0.17271     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     20   0.13707  3.41753  2.82608  3.32275     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     21   0.13707  3.41753  2.82608  3.32275     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     22   2.97335  3.62543  0.11312  3.53405     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     23   0.85674  2.53484  0.90495  2.39011     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     24   0.13707  3.41753  2.82608  3.32275     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     25   3.12639  2.61915  3.17309  0.17271     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     26   0.13707  3.41753  2.82608  3.32275     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     27   3.47600  0.12521  3.52362  2.86012     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     28   3.47600  0.12521  3.52362  2.86012     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     29   3.47600  0.12521  3.52362  2.86012     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     30   2.97335  3.62543  0.11312  3.53405     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     31   3.47600  0.12521  3.52362  2.86012     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     32   3.12639  2.61915  3.17309  0.17271     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     33   2.97335  3.62543  0.11312  3.53405     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     34   0.13707  3.41753  2.82608  3.32275     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     35   0.13707  3.41753  2.82608  3.32275     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     36   3.47600  0.12521  3.52362  2.86012     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     37   3.12639  2.61915  3.17309  0.17271     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     38   3.12639  2.61915  3.17309  0.17271     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     39   0.13707  3.41753  2.82608  3.32275     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     40   0.13707  3.41753  2.82608  3.32275     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     41   2.97335  3.62543  0.11312  3.53405     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     42   3.47600  0.12521  3.52362  2.86012     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     43   0.13707  3.41753  2.82608  3.32275     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     44   3.12639  2.61915  3.17309  0.17271     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03272  4.03272  1.46634  0.26236  1.09861  0.40547
+     45   0.13707  3.41753  2.82608  3.32275     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01821  4.01483        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fifteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:41:01 2012
+NSEQ  25
+EFFN  3.231812
+CKSUM 1558218022
+STATS LOCAL MSV       -8.0339  0.71931
+STATS LOCAL VITERBI   -7.7977  0.71931
+STATS LOCAL FORWARD   -4.3280  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33845  1.46503  1.31095  1.43921
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  0.00000        *
+      1   2.92681  3.55770  0.12050  3.45927      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+      2   3.05889  2.57622  3.10818  0.18354      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+      3   3.05889  2.57622  3.10818  0.18354      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+      4   3.05889  2.57622  3.10818  0.18354      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+      5   2.92681  3.55770  0.12050  3.45927      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+      6   0.14586  3.35072  2.78270  3.24961      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+      7   3.39904  0.13435  3.44993  2.80413      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+      8   3.39904  0.13435  3.44993  2.80413      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+      9   3.05889  2.57622  3.10818  0.18354      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     10   3.39904  0.13435  3.44993  2.80413     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     11   2.92681  3.55770  0.12050  3.45927     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     12   2.92681  3.55770  0.12050  3.45927     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     13   0.14586  3.35072  2.78270  3.24961     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     14   3.05889  2.57622  3.10818  0.18354     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     15   3.39904  0.13435  3.44993  2.80413     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     16   0.14586  3.35072  2.78270  3.24961     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     17   2.92681  3.55770  0.12050  3.45927     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     18   2.92681  3.55770  0.12050  3.45927     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     19   3.05889  2.57622  3.10818  0.18354     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     20   0.14586  3.35072  2.78270  3.24961     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     21   2.92681  3.55770  0.12050  3.45927     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     22   2.92681  3.55770  0.12050  3.45927     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     23   0.14586  3.35072  2.78270  3.24961     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     24   2.92681  3.55770  0.12050  3.45927     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     25   3.05889  2.57622  3.10818  0.18354     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     26   0.14586  3.35072  2.78270  3.24961     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     27   3.39904  0.13435  3.44993  2.80413     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     28   3.39904  0.13435  3.44993  2.80413     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     29   3.39904  0.13435  3.44993  2.80413     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     30   2.92681  3.55770  0.12050  3.45927     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     31   3.39904  0.13435  3.44993  2.80413     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     32   3.05889  2.57622  3.10818  0.18354     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     33   2.92681  3.55770  0.12050  3.45927     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     34   0.14586  3.35072  2.78270  3.24961     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     35   0.14586  3.35072  2.78270  3.24961     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     36   3.39904  0.13435  3.44993  2.80413     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     37   3.05889  2.57622  3.10818  0.18354     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     38   3.05889  2.57622  3.10818  0.18354     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     39   0.14586  3.35072  2.78270  3.24961     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     40   0.14586  3.35072  2.78270  3.24961     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     41   2.92681  3.55770  0.12050  3.45927     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     42   3.39904  0.13435  3.44993  2.80413     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     43   0.14586  3.35072  2.78270  3.24961     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     44   3.05889  2.57622  3.10818  0.18354     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99486  3.99486  1.46634  0.26236  1.09861  0.40547
+     45   0.14586  3.35072  2.78270  3.24961     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01893  3.97628        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fifty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:54:36 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2369742896
+STATS LOCAL MSV       -7.4718  0.72784
+STATS LOCAL VITERBI   -8.1085  0.72784
+STATS LOCAL FORWARD   -3.5683  0.72784
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.19105  1.40517  1.43038  1.55327
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fiftyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:54:44 2012
+NSEQ  6
+EFFN  3.231445
+CKSUM 431402623
+STATS LOCAL MSV       -8.0392  0.71932
+STATS LOCAL VITERBI   -7.8292  0.71932
+STATS LOCAL FORWARD   -4.1346  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21877  1.39336  1.44798  1.50904
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  0.00000        *
+      1   3.39890  0.13436  3.44980  2.80403      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      2   0.14587  3.35060  2.78262  3.24948      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      3   3.05877  2.57614  3.10806  0.18356      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      4   2.92673  3.55757  0.12052  3.45913      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      5   2.92673  3.55757  0.12052  3.45913      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      6   0.14587  3.35060  2.78262  3.24948      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      7   3.05877  2.57614  3.10806  0.18356      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      8   3.39890  0.13436  3.44980  2.80403      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      9   3.05877  2.57614  3.10806  0.18356      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     10   2.92673  3.55757  0.12052  3.45913     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     11   0.14587  3.35060  2.78262  3.24948     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     12   0.14587  3.35060  2.78262  3.24948     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     13   3.39890  0.13436  3.44980  2.80403     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     14   3.05877  2.57614  3.10806  0.18356     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     15   3.05877  2.57614  3.10806  0.18356     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     16   0.14587  3.35060  2.78262  3.24948     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     17   2.92673  3.55757  0.12052  3.45913     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     18   0.14587  3.35060  2.78262  3.24948     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     19   3.39890  0.13436  3.44980  2.80403     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     20   2.92673  3.55757  0.12052  3.45913     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     21   2.92673  3.55757  0.12052  3.45913     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     22   2.92673  3.55757  0.12052  3.45913     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     23   0.14587  3.35060  2.78262  3.24948     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     24   3.39890  0.13436  3.44980  2.80403     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     25   3.05877  2.57614  3.10806  0.18356     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     26   0.14587  3.35060  2.78262  3.24948     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     27   3.39890  0.13436  3.44980  2.80403     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     28   3.39890  0.13436  3.44980  2.80403     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     29   3.39890  0.13436  3.44980  2.80403     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     30   2.92673  3.55757  0.12052  3.45913     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     31   3.39890  0.13436  3.44980  2.80403     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     32   3.05877  2.57614  3.10806  0.18356     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     33   2.92673  3.55757  0.12052  3.45913     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     34   0.14587  3.35060  2.78262  3.24948     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     35   0.14587  3.35060  2.78262  3.24948     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     36   3.39890  0.13436  3.44980  2.80403     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     37   3.05877  2.57614  3.10806  0.18356     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     38   3.05877  2.57614  3.10806  0.18356     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     39   0.14587  3.35060  2.78262  3.24948     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     40   0.14587  3.35060  2.78262  3.24948     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     41   2.92673  3.55757  0.12052  3.45913     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     42   3.39890  0.13436  3.44980  2.80403     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     43   0.14587  3.35060  2.78262  3.24948     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     44   3.05877  2.57614  3.10806  0.18356     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     45   0.14587  3.35060  2.78262  3.24948     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01893  3.97621        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fiftythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:55:10 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2408033659
+STATS LOCAL MSV       -7.4844  0.72829
+STATS LOCAL VITERBI   -8.3468  0.72829
+STATS LOCAL FORWARD   -3.3326  0.72829
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28799  1.51827  1.43079  1.32440
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.57915  2.25909  2.64442  0.28946     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   0.23862  2.84929  2.43386  2.70756     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.53331  3.02441  0.20344  2.88069     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fiftytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:55:00 2012
+NSEQ  4
+EFFN  3.214844
+CKSUM 1972606151
+STATS LOCAL MSV       -8.0003  0.71933
+STATS LOCAL VITERBI   -7.7534  0.71933
+STATS LOCAL FORWARD   -4.3837  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40386  1.46567  1.24879  1.44148
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  0.00000        *
+      1   2.92285  3.55196  0.12115  3.45295      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      2   2.92285  3.55196  0.12115  3.45295      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      3   3.05326  2.57263  3.10276  0.18448      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      4   3.05326  2.57263  3.10276  0.18448      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      5   2.92285  3.55196  0.12115  3.45295      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      6   0.14663  3.34511  2.77903  3.24347      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      7   3.39256  0.13515  3.44371  2.79938      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      8   3.39256  0.13515  3.44371  2.79938      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      9   3.05326  2.57263  3.10276  0.18448      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     10   3.39256  0.13515  3.44371  2.79938     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     11   2.92285  3.55196  0.12115  3.45295     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     12   2.92285  3.55196  0.12115  3.45295     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     13   0.14663  3.34511  2.77903  3.24347     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     14   3.05326  2.57263  3.10276  0.18448     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     15   3.39256  0.13515  3.44371  2.79938     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     16   0.14663  3.34511  2.77903  3.24347     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     17   2.92285  3.55196  0.12115  3.45295     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     18   2.92285  3.55196  0.12115  3.45295     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     19   3.05326  2.57263  3.10276  0.18448     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     20   0.14663  3.34511  2.77903  3.24347     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     21   2.92285  3.55196  0.12115  3.45295     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     22   2.92285  3.55196  0.12115  3.45295     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     23   0.14663  3.34511  2.77903  3.24347     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     24   2.92285  3.55196  0.12115  3.45295     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     25   3.05326  2.57263  3.10276  0.18448     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     26   3.05326  2.57263  3.10276  0.18448     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     27   0.14663  3.34511  2.77903  3.24347     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     28   3.39256  0.13515  3.44371  2.79938     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     29   3.39256  0.13515  3.44371  2.79938     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     30   3.39256  0.13515  3.44371  2.79938     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     31   2.92285  3.55196  0.12115  3.45295     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     32   3.39256  0.13515  3.44371  2.79938     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     33   3.05326  2.57263  3.10276  0.18448     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     34   2.92285  3.55196  0.12115  3.45295     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     35   0.14663  3.34511  2.77903  3.24347     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     36   0.14663  3.34511  2.77903  3.24347     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     37   3.39256  0.13515  3.44371  2.79938     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     38   3.05326  2.57263  3.10276  0.18448     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     39   3.05326  2.57263  3.10276  0.18448     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     40   0.14663  3.34511  2.77903  3.24347     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     41   0.14663  3.34511  2.77903  3.24347     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     42   2.92285  3.55196  0.12115  3.45295     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     43   3.39256  0.13515  3.44371  2.79938     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     44   0.14663  3.34511  2.77903  3.24347     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     45   3.05326  2.57263  3.10276  0.18448     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01899  3.97309        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:38:17 2012
+NSEQ  60
+EFFN  3.262939
+CKSUM 553447981
+STATS LOCAL MSV       -8.1012  0.71933
+STATS LOCAL VITERBI   -7.7705  0.71933
+STATS LOCAL FORWARD   -4.2454  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27681  1.46386  1.37800  1.43696
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  0.00000        *
+      1   3.06915  2.58276  3.11805  0.18185      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+      2   2.93400  3.56812  0.11933  3.47076      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+      3   3.06915  2.58276  3.11805  0.18185      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+      4   3.06915  2.58276  3.11805  0.18185      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+      5   2.93400  3.56812  0.11933  3.47076      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+      6   0.14447  3.36094  2.78936  3.26078      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+      7   3.41083  0.13290  3.46123  2.81275      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+      8   3.41083  0.13290  3.46123  2.81275      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+      9   3.06915  2.58276  3.11805  0.18185      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     10   3.41083  0.13290  3.46123  2.81275     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     11   2.93400  3.56812  0.11933  3.47076     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     12   2.64571  3.42595  0.15033  3.32150     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     13   0.14447  3.36094  2.78936  3.26078     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     14   3.06915  2.58276  3.11805  0.18185     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     15   3.41083  0.13290  3.46123  2.81275     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     16   0.14447  3.36094  2.78936  3.26078     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     17   2.93400  3.56812  0.11933  3.47076     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     18   2.93400  3.56812  0.11933  3.47076     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     19   3.06915  2.58276  3.11805  0.18185     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     20   0.14447  3.36094  2.78936  3.26078     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     21   2.93400  3.56812  0.11933  3.47076     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     22   2.93400  3.56812  0.11933  3.47076     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     23   0.14447  3.36094  2.78936  3.26078     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     24   0.16521  3.28362  2.61433  3.18026     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     25   3.06915  2.58276  3.11805  0.18185     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     26   0.14447  3.36094  2.78936  3.26078     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     27   3.41083  0.13290  3.46123  2.81275     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     28   3.41083  0.13290  3.46123  2.81275     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     29   3.41083  0.13290  3.46123  2.81275     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     30   2.93400  3.56812  0.11933  3.47076     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     31   3.41083  0.13290  3.46123  2.81275     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     32   3.06915  2.58276  3.11805  0.18185     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     33   2.93400  3.56812  0.11933  3.47076     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     34   0.14447  3.36094  2.78936  3.26078     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     35   0.14447  3.36094  2.78936  3.26078     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     36   3.41083  0.13290  3.46123  2.81275     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     37   3.06915  2.58276  3.11805  0.18185     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     38   3.06915  2.58276  3.11805  0.18185     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     39   0.14447  3.36094  2.78936  3.26078     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     40   0.14447  3.36094  2.78936  3.26078     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     41   2.93400  3.56812  0.11933  3.47076     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     42   3.41083  0.13290  3.46123  2.81275     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     43   0.14447  3.36094  2.78936  3.26078     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     44   3.06915  2.58276  3.11805  0.18185     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03730  4.00057  4.00057  1.46634  0.26236  1.09861  0.40547
+     45   0.14447  3.36094  2.78936  3.26078     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01882  3.98210        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fortya_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:52:31 2012
+NSEQ  9
+EFFN  3.256348
+CKSUM 670822545
+STATS LOCAL MSV       -8.0760  0.71933
+STATS LOCAL VITERBI   -7.7063  0.71933
+STATS LOCAL FORWARD   -4.4217  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33894  1.46075  1.37970  1.36979
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  0.00000        *
+      1   3.06699  2.58138  3.11596  0.18220      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      2   3.06699  2.58138  3.11596  0.18220      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      3   3.06699  2.58138  3.11596  0.18220      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      4   3.06699  2.58138  3.11596  0.18220      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      5   2.93249  3.56592  0.11958  3.46834      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      6   0.14476  3.35879  2.78795  3.25843      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      7   3.40835  0.13320  3.45885  2.81094      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      8   3.40835  0.13320  3.45885  2.81094      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      9   3.06699  2.58138  3.11596  0.18220      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     10   3.40835  0.13320  3.45885  2.81094     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     11   2.93249  3.56592  0.11958  3.46834     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     12   2.93249  3.56592  0.11958  3.46834     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     13   0.14476  3.35879  2.78795  3.25843     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     14   3.06699  2.58138  3.11596  0.18220     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     15   3.40835  0.13320  3.45885  2.81094     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     16   0.14476  3.35879  2.78795  3.25843     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     17   2.93249  3.56592  0.11958  3.46834     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     18   2.93249  3.56592  0.11958  3.46834     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     19   3.06699  2.58138  3.11596  0.18220     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     20   0.14476  3.35879  2.78795  3.25843     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     21   2.93249  3.56592  0.11958  3.46834     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     22   2.93249  3.56592  0.11958  3.46834     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     23   2.93249  3.56592  0.11958  3.46834     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     24   0.14476  3.35879  2.78795  3.25843     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     25   3.06699  2.58138  3.11596  0.18220     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     26   0.14476  3.35879  2.78795  3.25843     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     27   3.40835  0.13320  3.45885  2.81094     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     28   3.40835  0.13320  3.45885  2.81094     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     29   3.40835  0.13320  3.45885  2.81094     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     30   2.93249  3.56592  0.11958  3.46834     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     31   3.40835  0.13320  3.45885  2.81094     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     32   3.06699  2.58138  3.11596  0.18220     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     33   2.93249  3.56592  0.11958  3.46834     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     34   0.14476  3.35879  2.78795  3.25843     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     35   0.14476  3.35879  2.78795  3.25843     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     36   3.40835  0.13320  3.45885  2.81094     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     37   3.06699  2.58138  3.11596  0.18220     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     38   3.06699  2.58138  3.11596  0.18220     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     39   0.14476  3.35879  2.78795  3.25843     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     40   0.14476  3.35879  2.78795  3.25843     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     41   2.93249  3.56592  0.11958  3.46834     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     42   3.40835  0.13320  3.45885  2.81094     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     43   0.14476  3.35879  2.78795  3.25843     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     44   3.06699  2.58138  3.11596  0.18220     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     45   0.14476  3.35879  2.78795  3.25843     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01885  3.98087        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fortyb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:52:40 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1646720026
+STATS LOCAL MSV       -7.3847  0.72777
+STATS LOCAL VITERBI   -8.1234  0.72777
+STATS LOCAL FORWARD   -3.7468  0.72777
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34083  1.40538  1.31636  1.49171
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fortyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:54:15 2012
+NSEQ  33
+EFFN  3.323364
+CKSUM 1254720418
+STATS LOCAL MSV       -8.0184  0.71932
+STATS LOCAL VITERBI   -7.7627  0.71932
+STATS LOCAL FORWARD   -4.3197  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33931  1.46585  1.25230  1.50849
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  0.00000        *
+      1   2.94768  3.58798  0.11714  3.49267      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+      2   2.94768  3.58798  0.11714  3.49267      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+      3   3.08883  2.59528  3.13698  0.17864      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+      4   3.08883  2.59528  3.13698  0.17864      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+      5   2.94768  3.58798  0.11714  3.49267      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+      6   0.14187  3.38048  2.80207  3.28217      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+      7   3.43336  0.13018  3.48281  2.82918      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+      8   3.43336  0.13018  3.48281  2.82918      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+      9   3.08883  2.59528  3.13698  0.17864      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     10   3.43336  0.13018  3.48281  2.82918     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     11   2.94768  3.58798  0.11714  3.49267     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     12   2.94768  3.58798  0.11714  3.49267     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     13   0.14187  3.38048  2.80207  3.28217     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     14   3.08883  2.59528  3.13698  0.17864     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     15   3.43336  0.13018  3.48281  2.82918     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     16   0.14187  3.38048  2.80207  3.28217     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     17   2.94768  3.58798  0.11714  3.49267     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     18   2.94768  3.58798  0.11714  3.49267     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     19   3.08883  2.59528  3.13698  0.17864     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     20   0.14187  3.38048  2.80207  3.28217     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     21   2.94768  3.58798  0.11714  3.49267     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     22   2.94768  3.58798  0.11714  3.49267     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     23   1.89688  2.97415  0.30013  2.84464     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     24   0.28830  2.95065  1.97340  2.82731     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     25   3.08883  2.59528  3.13698  0.17864     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     26   0.14187  3.38048  2.80207  3.28217     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     27   3.43336  0.13018  3.48281  2.82918     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     28   3.43336  0.13018  3.48281  2.82918     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     29   3.43336  0.13018  3.48281  2.82918     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     30   2.94768  3.58798  0.11714  3.49267     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     31   3.43336  0.13018  3.48281  2.82918     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     32   3.08883  2.59528  3.13698  0.17864     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     33   2.94768  3.58798  0.11714  3.49267     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     34   0.14187  3.38048  2.80207  3.28217     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     35   0.14187  3.38048  2.80207  3.28217     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     36   3.43336  0.13018  3.48281  2.82918     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     37   3.08883  2.59528  3.13698  0.17864     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     38   3.08883  2.59528  3.13698  0.17864     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     39   0.14187  3.38048  2.80207  3.28217     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     40   0.14187  3.38048  2.80207  3.28217     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     41   2.94768  3.58798  0.11714  3.49267     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     42   3.43336  0.13018  3.48281  2.82918     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     43   0.14187  3.38048  2.80207  3.28217     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     44   3.08883  2.59528  3.13698  0.17864     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     45   0.14187  3.38048  2.80207  3.28217     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01861  3.99330        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fortyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:53:41 2012
+NSEQ  123
+EFFN  3.667328
+CKSUM 357422695
+STATS LOCAL MSV       -7.5443  0.71933
+STATS LOCAL VITERBI   -7.5665  0.71933
+STATS LOCAL FORWARD   -4.2066  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21164  1.45999  1.49119  1.40670
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  0.00000        *
+      1   2.57888  2.88814  0.28150  2.17322      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+      2   3.19512  2.66273  3.23915  0.16242      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+      3   3.19512  2.66273  3.23915  0.16242      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+      4   3.19512  2.66273  3.23915  0.16242      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+      5   3.01893  3.69244  0.10632  3.60823      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+      6   0.12887  3.48452  2.86925  3.39623      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+      7   3.55279  0.11680  3.59702  2.91534      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+      8   3.55279  0.11680  3.59702  2.91534      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+      9   3.19512  2.66273  3.23915  0.16242      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     10   3.55279  0.11680  3.59702  2.91534     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     11   0.12887  3.48452  2.86925  3.39623     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     12   0.23596  3.13078  2.14027  3.01831     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     13   0.12887  3.48452  2.86925  3.39623     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     14   3.19512  2.66273  3.23915  0.16242     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     15   3.55279  0.11680  3.59702  2.91534     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     16   0.12887  3.48452  2.86925  3.39623     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     17   3.01893  3.69244  0.10632  3.60823     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     18   3.01893  3.69244  0.10632  3.60823     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     19   3.19512  2.66273  3.23915  0.16242     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     20   0.12887  3.48452  2.86925  3.39623     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     21   3.01893  3.69244  0.10632  3.60823     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     22   3.01893  3.69244  0.10632  3.60823     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     23   0.16047  3.36379  2.58263  3.26806     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     24   1.91698  1.65881  0.85986  1.42977     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     25   3.19512  2.66273  3.23915  0.16242     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     26   0.12887  3.48452  2.86925  3.39623     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     27   3.55279  0.11680  3.59702  2.91534     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     28   2.71946  0.30708  2.20153  2.43195     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     29   3.55279  0.11680  3.59702  2.91534     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     30   3.01893  3.69244  0.10632  3.60823     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     31   3.55279  0.11680  3.59702  2.91534     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     32   3.19512  2.66273  3.23915  0.16242     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     33   3.01893  3.69244  0.10632  3.60823     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     34   0.12887  3.48452  2.86925  3.39623     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     35   0.12887  3.48452  2.86925  3.39623     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     36   3.55279  0.11680  3.59702  2.91534     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     37   3.19512  2.66273  3.23915  0.16242     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     38   3.19512  2.66273  3.23915  0.16242     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     39   0.12887  3.48452  2.86925  3.39623     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     40   0.12887  3.48452  2.86925  3.39623     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     41   3.01893  3.69244  0.10632  3.60823     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     42   3.55279  0.11680  3.59702  2.91534     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     43   0.12887  3.48452  2.86925  3.39623     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     44   3.19512  2.66273  3.23915  0.16242     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03468  4.07198  4.07198  1.46634  0.26236  1.09861  0.40547
+     45   0.12887  3.48452  2.86925  3.39623     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01749  4.05479        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fortyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:53:24 2012
+NSEQ  9
+EFFN  3.511230
+CKSUM 3066240300
+STATS LOCAL MSV       -7.4695  0.71931
+STATS LOCAL VITERBI   -7.5436  0.71931
+STATS LOCAL FORWARD   -4.0531  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.19958  1.33621  1.60412  1.44914
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  0.00000        *
+      1   1.31037  0.70272  2.24865  2.04408      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+      2   3.14806  2.63290  3.19393  0.16938      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+      3   3.14806  2.63290  3.19393  0.16938      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+      4   3.50040  0.12246  3.54695  2.87773      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+      5   2.98791  3.64678  0.11090  3.55766      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+      6   0.13441  3.43877  2.83979  3.34604      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+      7   3.50040  0.12246  3.54695  2.87773      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+      8   3.50040  0.12246  3.54695  2.87773      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+      9   3.14806  2.63290  3.19393  0.16938      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     10   3.50040  0.12246  3.54695  2.87773     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     11   0.13441  3.43877  2.83979  3.34604     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     12   0.13441  3.43877  2.83979  3.34604     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     13   0.13441  3.43877  2.83979  3.34604     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     14   3.14806  2.63290  3.19393  0.16938     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     15   3.50040  0.12246  3.54695  2.87773     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     16   0.13441  3.43877  2.83979  3.34604     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     17   2.98791  3.64678  0.11090  3.55766     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     18   2.98791  3.64678  0.11090  3.55766     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     19   3.14806  2.63290  3.19393  0.16938     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     20   0.13441  3.43877  2.83979  3.34604     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     21   2.98791  3.64678  0.11090  3.55766     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     22   2.98791  3.64678  0.11090  3.55766     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     23   0.13441  3.43877  2.83979  3.34604     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     24   2.53695  1.34098  2.60499  0.53546     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     25   3.14806  2.63290  3.19393  0.16938     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     26   0.13441  3.43877  2.83979  3.34604     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     27   3.50040  0.12246  3.54695  2.87773     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     28   3.50040  0.12246  3.54695  2.87773     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     29   3.50040  0.12246  3.54695  2.87773     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     30   2.98791  3.64678  0.11090  3.55766     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     31   3.50040  0.12246  3.54695  2.87773     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     32   3.14806  2.63290  3.19393  0.16938     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     33   2.98791  3.64678  0.11090  3.55766     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     34   0.13441  3.43877  2.83979  3.34604     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     35   0.13441  3.43877  2.83979  3.34604     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     36   3.50040  0.12246  3.54695  2.87773     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     37   3.14806  2.63290  3.19393  0.16938     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     38   3.14806  2.63290  3.19393  0.16938     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     39   0.13441  3.43877  2.83979  3.34604     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     40   0.13441  3.43877  2.83979  3.34604     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     41   2.98791  3.64678  0.11090  3.55766     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     42   3.50040  0.12246  3.54695  2.87773     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     43   0.13441  3.43877  2.83979  3.34604     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     44   3.14806  2.63290  3.19393  0.16938     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     45   0.13441  3.43877  2.83979  3.34604     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01798  4.02736        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fortynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:54:25 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 857734258
+STATS LOCAL MSV       -8.0619  0.72029
+STATS LOCAL VITERBI   -7.8402  0.72029
+STATS LOCAL FORWARD   -4.1611  0.72029
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27868  1.46381  1.37517  1.43781
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   0.15719  3.27118  2.73043  3.16274     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fortyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:52:53 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1646720026
+STATS LOCAL MSV       -7.3847  0.72777
+STATS LOCAL VITERBI   -8.1234  0.72777
+STATS LOCAL FORWARD   -3.7468  0.72777
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34083  1.40538  1.31636  1.49171
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fortyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:54:04 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3385694820
+STATS LOCAL MSV       -7.4277  0.72750
+STATS LOCAL VITERBI   -8.2460  0.72750
+STATS LOCAL FORWARD   -3.5982  0.72750
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39862  1.41261  1.20778  1.55735
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fortysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:53:54 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 671474392
+STATS LOCAL MSV       -7.8722  0.72025
+STATS LOCAL VITERBI   -7.7348  0.72025
+STATS LOCAL FORWARD   -3.8214  0.72025
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.17115  1.26836  1.60171  1.57433
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fortythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:53:13 2012
+NSEQ  19
+EFFN  3.288818
+CKSUM 2364531488
+STATS LOCAL MSV       -7.9491  0.71933
+STATS LOCAL VITERBI   -7.6186  0.71933
+STATS LOCAL FORWARD   -4.1713  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22037  1.38745  1.60911  1.36609
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  0.00000        *
+      1   3.07762  2.58815  3.12619  0.18046      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+      2   3.07762  2.58815  3.12619  0.18046      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+      3   3.07762  2.58815  3.12619  0.18046      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+      4   3.07762  2.58815  3.12619  0.18046      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+      5   2.93991  3.57668  0.11838  3.48020      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+      6   0.14334  3.36936  2.79484  3.26999      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+      7   3.42054  0.13172  3.47053  2.81984      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+      8   3.42054  0.13172  3.47053  2.81984      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+      9   3.07762  2.58815  3.12619  0.18046      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     10   3.42054  0.13172  3.47053  2.81984     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     11   0.14334  3.36936  2.79484  3.26999     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     12   0.14334  3.36936  2.79484  3.26999     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     13   0.14334  3.36936  2.79484  3.26999     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     14   3.07762  2.58815  3.12619  0.18046     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     15   3.42054  0.13172  3.47053  2.81984     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     16   0.14334  3.36936  2.79484  3.26999     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     17   2.93991  3.57668  0.11838  3.48020     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     18   2.93991  3.57668  0.11838  3.48020     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     19   3.07762  2.58815  3.12619  0.18046     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     20   0.14334  3.36936  2.79484  3.26999     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     21   2.93991  3.57668  0.11838  3.48020     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     22   2.93991  3.57668  0.11838  3.48020     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     23   0.14334  3.36936  2.79484  3.26999     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     24   3.42054  0.13172  3.47053  2.81984     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     25   3.07762  2.58815  3.12619  0.18046     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     26   0.14334  3.36936  2.79484  3.26999     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     27   3.42054  0.13172  3.47053  2.81984     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     28   3.42054  0.13172  3.47053  2.81984     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     29   3.42054  0.13172  3.47053  2.81984     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     30   2.93991  3.57668  0.11838  3.48020     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     31   3.42054  0.13172  3.47053  2.81984     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     32   3.07762  2.58815  3.12619  0.18046     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     33   2.93991  3.57668  0.11838  3.48020     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     34   0.14334  3.36936  2.79484  3.26999     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     35   0.14334  3.36936  2.79484  3.26999     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     36   3.42054  0.13172  3.47053  2.81984     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     37   3.07762  2.58815  3.12619  0.18046     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     38   3.07762  2.58815  3.12619  0.18046     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     39   0.14334  3.36936  2.79484  3.26999     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     40   0.14334  3.36936  2.79484  3.26999     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     41   2.93991  3.57668  0.11838  3.48020     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     42   3.42054  0.13172  3.47053  2.81984     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     43   0.14334  3.36936  2.79484  3.26999     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     44   3.07762  2.58815  3.12619  0.18046     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03712  4.00530  4.00530  1.46634  0.26236  1.09861  0.40547
+     45   0.14334  3.36936  2.79484  3.26999     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01873  3.98691        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fortytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:53:01 2012
+NSEQ  455
+EFFN  3.294334
+CKSUM 4097386875
+STATS LOCAL MSV       -8.0512  0.71932
+STATS LOCAL VITERBI   -7.7540  0.71932
+STATS LOCAL FORWARD   -4.3509  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33774  1.46668  1.24999  1.51247
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  0.00000        *
+      1   2.94116  3.57850  0.11818  3.48221      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+      2   2.94116  3.57850  0.11818  3.48221      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+      3   3.07942  2.58929  3.12792  0.18017      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+      4   3.07942  2.58929  3.12792  0.18017      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+      5   2.94116  3.57850  0.11818  3.48221      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+      6   0.14310  3.37115  2.79600  3.27195      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+      7   3.42260  0.13147  3.47250  2.82134      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+      8   3.42260  0.13147  3.47250  2.82134      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+      9   3.07942  2.58929  3.12792  0.18017      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     10   3.42260  0.13147  3.47250  2.82134     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     11   2.94116  3.57850  0.11818  3.48221     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     12   2.62230  3.42066  0.15271  3.31614     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     13   0.14310  3.37115  2.79600  3.27195     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     14   3.07942  2.58929  3.12792  0.18017     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     15   3.42260  0.13147  3.47250  2.82134     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     16   0.17962  3.23881  2.50564  3.13311     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     17   2.81885  3.35704  0.13881  3.34966     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     18   2.94116  3.57850  0.11818  3.48221     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     19   2.95362  2.54048  2.85904  0.20863     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     20   0.15748  3.31657  2.66958  3.21526     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     21   2.94116  3.57850  0.11818  3.48221     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     22   2.94116  3.57850  0.11818  3.48221     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     23   2.51884  3.36233  0.16702  3.25420     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     24   0.16280  3.29721  2.62721  3.19489     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     25   3.07942  2.58929  3.12792  0.18017     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     26   0.14310  3.37115  2.79600  3.27195     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     27   3.42260  0.13147  3.47250  2.82134     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     28   3.42260  0.13147  3.47250  2.82134     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     29   3.42260  0.13147  3.47250  2.82134     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     30   2.94116  3.57850  0.11818  3.48221     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     31   3.42260  0.13147  3.47250  2.82134     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     32   3.07942  2.58929  3.12792  0.18017     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     33   2.94116  3.57850  0.11818  3.48221     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     34   0.14310  3.37115  2.79600  3.27195     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     35   0.14310  3.37115  2.79600  3.27195     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     36   3.42260  0.13147  3.47250  2.82134     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     37   3.07942  2.58929  3.12792  0.18017     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     38   3.07942  2.58929  3.12792  0.18017     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     39   0.14310  3.37115  2.79600  3.27195     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     40   0.14310  3.37115  2.79600  3.27195     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     41   2.94116  3.57850  0.11818  3.48221     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     42   3.42260  0.13147  3.47250  2.82134     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     43   0.14310  3.37115  2.79600  3.27195     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     44   3.07942  2.58929  3.12792  0.18017     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03708  4.00630  4.00630  1.46634  0.26236  1.09861  0.40547
+     45   0.14310  3.37115  2.79600  3.27195     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01871  3.98794        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:38:03 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3456085325
+STATS LOCAL MSV       -7.4895  0.72778
+STATS LOCAL VITERBI   -8.1886  0.72778
+STATS LOCAL FORWARD   -3.7960  0.72778
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28710  1.46897  1.31168  1.49432
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_fourteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:40:51 2012
+NSEQ  5
+EFFN  3.198242
+CKSUM 4201851627
+STATS LOCAL MSV       -8.0638  0.71931
+STATS LOCAL VITERBI   -7.7568  0.71931
+STATS LOCAL FORWARD   -4.2112  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27931  1.32915  1.37854  1.58416
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  0.00000        *
+      1   3.38618  0.13595  3.43760  2.79470      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      2   2.91894  3.54631  0.12180  3.44673      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      3   3.38618  0.13595  3.43760  2.79470      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      4   3.04773  2.56910  3.09744  0.18541      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      5   2.91894  3.54631  0.12180  3.44673      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      6   0.14739  3.33958  2.77542  3.23743      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      7   3.38618  0.13595  3.43760  2.79470      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      8   3.38618  0.13595  3.43760  2.79470      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      9   3.04773  2.56910  3.09744  0.18541      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     10   3.38618  0.13595  3.43760  2.79470     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     11   2.91894  3.54631  0.12180  3.44673     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     12   2.91894  3.54631  0.12180  3.44673     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     13   0.14739  3.33958  2.77542  3.23743     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     14   3.04773  2.56910  3.09744  0.18541     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     15   3.38618  0.13595  3.43760  2.79470     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     16   0.14739  3.33958  2.77542  3.23743     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     17   2.91894  3.54631  0.12180  3.44673     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     18   2.91894  3.54631  0.12180  3.44673     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     19   3.04773  2.56910  3.09744  0.18541     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     20   0.14739  3.33958  2.77542  3.23743     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     21   2.91894  3.54631  0.12180  3.44673     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     22   2.91894  3.54631  0.12180  3.44673     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     23   0.14739  3.33958  2.77542  3.23743     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     24   0.14739  3.33958  2.77542  3.23743     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     25   3.04773  2.56910  3.09744  0.18541     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     26   0.14739  3.33958  2.77542  3.23743     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     27   3.38618  0.13595  3.43760  2.79470     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     28   3.38618  0.13595  3.43760  2.79470     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     29   3.38618  0.13595  3.43760  2.79470     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     30   2.91894  3.54631  0.12180  3.44673     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     31   3.38618  0.13595  3.43760  2.79470     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     32   3.04773  2.56910  3.09744  0.18541     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     33   2.91894  3.54631  0.12180  3.44673     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     34   0.14739  3.33958  2.77542  3.23743     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     35   0.14739  3.33958  2.77542  3.23743     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     36   3.38618  0.13595  3.43760  2.79470     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     37   3.04773  2.56910  3.09744  0.18541     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     38   3.04773  2.56910  3.09744  0.18541     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     39   0.14739  3.33958  2.77542  3.23743     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     40   0.14739  3.33958  2.77542  3.23743     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     41   2.91894  3.54631  0.12180  3.44673     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     42   3.38618  0.13595  3.43760  2.79470     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     43   0.14739  3.33958  2.77542  3.23743     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     44   3.04773  2.56910  3.09744  0.18541     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     45   0.14739  3.33958  2.77542  3.23743     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01905  3.96996        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:38:59 2012
+NSEQ  66
+EFFN  3.250854
+CKSUM 1822021581
+STATS LOCAL MSV       -8.0686  0.71931
+STATS LOCAL VITERBI   -7.5453  0.71931
+STATS LOCAL FORWARD   -4.2192  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27832  1.39210  1.44784  1.43605
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  0.00000        *
+      1   2.93122  3.56409  0.11978  3.46631      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+      2   3.06518  2.58023  3.11423  0.18250      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+      3   3.06518  2.58023  3.11423  0.18250      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+      4   3.06518  2.58023  3.11423  0.18250      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+      5   2.93122  3.56409  0.11978  3.46631      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+      6   0.14501  3.35699  2.78678  3.25646      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+      7   3.40627  0.13346  3.45686  2.80942      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+      8   3.40627  0.13346  3.45686  2.80942      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+      9   3.06518  2.58023  3.11423  0.18250      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     10   3.40627  0.13346  3.45686  2.80942     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     11   0.14501  3.35699  2.78678  3.25646     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     12   0.14501  3.35699  2.78678  3.25646     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     13   0.14501  3.35699  2.78678  3.25646     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     14   3.06518  2.58023  3.11423  0.18250     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     15   3.40627  0.13346  3.45686  2.80942     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     16   0.14501  3.35699  2.78678  3.25646     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     17   2.93122  3.56409  0.11978  3.46631     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     18   2.93122  3.56409  0.11978  3.46631     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     19   3.06518  2.58023  3.11423  0.18250     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     20   0.14501  3.35699  2.78678  3.25646     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     21   2.93122  3.56409  0.11978  3.46631     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     22   2.93122  3.56409  0.11978  3.46631     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     23   2.93122  3.56409  0.11978  3.46631     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     24   3.40627  0.13346  3.45686  2.80942     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     25   3.06518  2.58023  3.11423  0.18250     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     26   0.14501  3.35699  2.78678  3.25646     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     27   3.40627  0.13346  3.45686  2.80942     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     28   3.40627  0.13346  3.45686  2.80942     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     29   3.40627  0.13346  3.45686  2.80942     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     30   2.93122  3.56409  0.11978  3.46631     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     31   3.40627  0.13346  3.45686  2.80942     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     32   3.06518  2.58023  3.11423  0.18250     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     33   2.93122  3.56409  0.11978  3.46631     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     34   0.14501  3.35699  2.78678  3.25646     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     35   0.14501  3.35699  2.78678  3.25646     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     36   3.40627  0.13346  3.45686  2.80942     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     37   3.06518  2.58023  3.11423  0.18250     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     38   3.06518  2.58023  3.11423  0.18250     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     39   0.14501  3.35699  2.78678  3.25646     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     40   0.14501  3.35699  2.78678  3.25646     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     41   2.93122  3.56409  0.11978  3.46631     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     42   3.40627  0.13346  3.45686  2.80942     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     43   0.14501  3.35699  2.78678  3.25646     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     44   3.06518  2.58023  3.11423  0.18250     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99836  3.99836  1.46634  0.26236  1.09861  0.40547
+     45   0.14501  3.35699  2.78678  3.25646     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01887  3.97984        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_nineteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:41:50 2012
+NSEQ  4
+EFFN  3.261719
+CKSUM 3498045266
+STATS LOCAL MSV       -7.9456  0.71932
+STATS LOCAL VITERBI   -7.6255  0.71932
+STATS LOCAL FORWARD   -4.0520  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28150  1.26028  1.61286  1.42925
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  0.00000        *
+      1   3.06875  2.58250  3.11766  0.18191      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      2   3.06875  2.58250  3.11766  0.18191      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      3   3.06875  2.58250  3.11766  0.18191      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      4   3.41037  0.13295  3.46079  2.81242      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      5   2.93372  3.56771  0.11938  3.47031      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      6   3.41037  0.13295  3.46079  2.81242      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      7   3.41037  0.13295  3.46079  2.81242      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      8   3.41037  0.13295  3.46079  2.81242      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      9   3.06875  2.58250  3.11766  0.18191      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     10   3.41037  0.13295  3.46079  2.81242     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     11   0.14453  3.36055  2.78910  3.26035     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     12   0.14453  3.36055  2.78910  3.26035     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     13   0.14453  3.36055  2.78910  3.26035     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     14   3.06875  2.58250  3.11766  0.18191     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     15   3.41037  0.13295  3.46079  2.81242     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     16   0.14453  3.36055  2.78910  3.26035     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     17   2.93372  3.56771  0.11938  3.47031     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     18   2.93372  3.56771  0.11938  3.47031     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     19   3.06875  2.58250  3.11766  0.18191     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     20   0.14453  3.36055  2.78910  3.26035     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     21   2.93372  3.56771  0.11938  3.47031     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     22   2.93372  3.56771  0.11938  3.47031     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     23   0.14453  3.36055  2.78910  3.26035     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     24   3.41037  0.13295  3.46079  2.81242     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     25   3.06875  2.58250  3.11766  0.18191     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     26   0.14453  3.36055  2.78910  3.26035     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     27   3.41037  0.13295  3.46079  2.81242     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     28   3.41037  0.13295  3.46079  2.81242     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     29   3.41037  0.13295  3.46079  2.81242     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     30   2.93372  3.56771  0.11938  3.47031     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     31   3.41037  0.13295  3.46079  2.81242     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     32   3.06875  2.58250  3.11766  0.18191     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     33   2.93372  3.56771  0.11938  3.47031     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     34   0.14453  3.36055  2.78910  3.26035     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     35   0.14453  3.36055  2.78910  3.26035     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     36   3.41037  0.13295  3.46079  2.81242     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     37   3.06875  2.58250  3.11766  0.18191     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     38   3.06875  2.58250  3.11766  0.18191     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     39   0.14453  3.36055  2.78910  3.26035     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     40   0.14453  3.36055  2.78910  3.26035     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     41   2.93372  3.56771  0.11938  3.47031     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     42   3.41037  0.13295  3.46079  2.81242     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     43   0.14453  3.36055  2.78910  3.26035     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     44   3.06875  2.58250  3.11766  0.18191     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     45   0.14453  3.36055  2.78910  3.26035     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01883  3.98187        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:37:32 2012
+NSEQ  30
+EFFN  3.197021
+CKSUM 1055639096
+STATS LOCAL MSV       -8.0574  0.71933
+STATS LOCAL VITERBI   -7.7449  0.71933
+STATS LOCAL FORWARD   -4.3675  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33801  1.46929  1.24762  1.51252
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  0.00000        *
+      1   2.91865  3.54590  0.12184  3.44627      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+      2   2.91865  3.54590  0.12184  3.44627      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+      3   3.04732  2.56884  3.09705  0.18548      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+      4   3.04732  2.56884  3.09705  0.18548      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+      5   2.91865  3.54590  0.12184  3.44627      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+      6   0.14744  3.33918  2.77515  3.23698      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+      7   3.38570  0.13601  3.43715  2.79436      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+      8   3.38570  0.13601  3.43715  2.79436      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+      9   3.04732  2.56884  3.09705  0.18548      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     10   3.38570  0.13601  3.43715  2.79436     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     11   2.91865  3.54590  0.12184  3.44627     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     12   2.91865  3.54590  0.12184  3.44627     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     13   0.14744  3.33918  2.77515  3.23698     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     14   3.04732  2.56884  3.09705  0.18548     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     15   3.38570  0.13601  3.43715  2.79436     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     16   0.14744  3.33918  2.77515  3.23698     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     17   2.91865  3.54590  0.12184  3.44627     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     18   2.91865  3.54590  0.12184  3.44627     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     19   3.04732  2.56884  3.09705  0.18548     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     20   0.14744  3.33918  2.77515  3.23698     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     21   2.91865  3.54590  0.12184  3.44627     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     22   2.91865  3.54590  0.12184  3.44627     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     23   2.91865  3.54590  0.12184  3.44627     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     24   0.14744  3.33918  2.77515  3.23698     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     25   3.04732  2.56884  3.09705  0.18548     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     26   0.14744  3.33918  2.77515  3.23698     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     27   3.38570  0.13601  3.43715  2.79436     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     28   3.38570  0.13601  3.43715  2.79436     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     29   3.38570  0.13601  3.43715  2.79436     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     30   2.91865  3.54590  0.12184  3.44627     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     31   3.38570  0.13601  3.43715  2.79436     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     32   3.04732  2.56884  3.09705  0.18548     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     33   2.91865  3.54590  0.12184  3.44627     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     34   0.14744  3.33918  2.77515  3.23698     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     35   0.14744  3.33918  2.77515  3.23698     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     36   3.38570  0.13601  3.43715  2.79436     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     37   3.04732  2.56884  3.09705  0.18548     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     38   3.04732  2.56884  3.09705  0.18548     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     39   0.14744  3.33918  2.77515  3.23698     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     40   0.14744  3.33918  2.77515  3.23698     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     41   2.91865  3.54590  0.12184  3.44627     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     42   3.38570  0.13601  3.43715  2.79436     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     43   0.14744  3.33918  2.77515  3.23698     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     44   3.04732  2.56884  3.09705  0.18548     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     45   0.14744  3.33918  2.77515  3.23698     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01906  3.96973        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:38:37 2012
+NSEQ  92
+EFFN  3.265259
+CKSUM 3787431590
+STATS LOCAL MSV       -8.0243  0.71933
+STATS LOCAL VITERBI   -7.7987  0.71933
+STATS LOCAL FORWARD   -4.3130  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33962  1.46395  1.31250  1.43721
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  0.00000        *
+      1   2.93454  3.56889  0.11924  3.47161      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+      2   3.06991  2.58324  3.11878  0.18172      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+      3   3.06991  2.58324  3.11878  0.18172      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+      4   3.06991  2.58324  3.11878  0.18172      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+      5   2.93454  3.56889  0.11924  3.47161      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+      6   0.14437  3.36170  2.78985  3.26161      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+      7   3.41171  0.13279  3.46207  2.81339      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+      8   3.41171  0.13279  3.46207  2.81339      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+      9   3.06991  2.58324  3.11878  0.18172      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     10   3.41171  0.13279  3.46207  2.81339     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     11   2.93454  3.56889  0.11924  3.47161     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     12   2.93454  3.56889  0.11924  3.47161     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     13   0.14437  3.36170  2.78985  3.26161     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     14   3.06991  2.58324  3.11878  0.18172     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     15   3.41171  0.13279  3.46207  2.81339     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     16   0.14437  3.36170  2.78985  3.26161     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     17   2.93454  3.56889  0.11924  3.47161     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     18   2.93454  3.56889  0.11924  3.47161     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     19   3.06991  2.58324  3.11878  0.18172     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     20   0.14437  3.36170  2.78985  3.26161     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     21   2.93454  3.56889  0.11924  3.47161     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     22   2.93454  3.56889  0.11924  3.47161     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     23   0.18070  3.23058  2.50338  3.12421     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     24   2.68685  3.31072  0.16559  3.03618     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     25   3.06991  2.58324  3.11878  0.18172     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     26   0.14437  3.36170  2.78985  3.26161     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     27   3.41171  0.13279  3.46207  2.81339     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     28   3.41171  0.13279  3.46207  2.81339     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     29   3.41171  0.13279  3.46207  2.81339     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     30   2.93454  3.56889  0.11924  3.47161     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     31   3.41171  0.13279  3.46207  2.81339     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     32   3.06991  2.58324  3.11878  0.18172     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     33   2.93454  3.56889  0.11924  3.47161     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     34   0.14437  3.36170  2.78985  3.26161     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     35   0.14437  3.36170  2.78985  3.26161     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     36   3.41171  0.13279  3.46207  2.81339     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     37   3.06991  2.58324  3.11878  0.18172     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     38   3.06991  2.58324  3.11878  0.18172     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     39   0.14437  3.36170  2.78985  3.26161     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     40   0.14437  3.36170  2.78985  3.26161     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     41   2.93454  3.56889  0.11924  3.47161     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     42   3.41171  0.13279  3.46207  2.81339     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     43   0.14437  3.36170  2.78985  3.26161     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     44   3.06991  2.58324  3.11878  0.18172     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00100  4.00100  1.46634  0.26236  1.09861  0.40547
+     45   0.14437  3.36170  2.78985  3.26161     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01881  3.98253        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_seventeen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:41:26 2012
+NSEQ  10
+EFFN  3.461914
+CKSUM 2775193365
+STATS LOCAL MSV       -7.4327  0.71933
+STATS LOCAL VITERBI   -7.5773  0.71933
+STATS LOCAL FORWARD   -4.1592  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.15406  1.42255  1.58298  1.43471
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  0.00000        *
+      1   0.13628  3.42382  2.83014  3.32964      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+      2   3.13280  2.62321  3.17925  0.17172      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+      3   3.13280  2.62321  3.17925  0.17172      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+      4   2.88135  2.05857  2.93744  0.27010      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+      5   2.97767  3.63176  0.11246  3.54105      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+      6   0.13628  3.42382  2.83014  3.32964      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+      7   3.48323  0.12439  3.53054  2.86534      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+      8   3.48323  0.12439  3.53054  2.86534      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+      9   3.13280  2.62321  3.17925  0.17172      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     10   3.48323  0.12439  3.53054  2.86534     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     11   0.13628  3.42382  2.83014  3.32964     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     12   0.13628  3.42382  2.83014  3.32964     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     13   0.13628  3.42382  2.83014  3.32964     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     14   3.13280  2.62321  3.17925  0.17172     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     15   3.48323  0.12439  3.53054  2.86534     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     16   0.13628  3.42382  2.83014  3.32964     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     17   2.97767  3.63176  0.11246  3.54105     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     18   2.97767  3.63176  0.11246  3.54105     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     19   3.13280  2.62321  3.17925  0.17172     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     20   0.13628  3.42382  2.83014  3.32964     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     21   2.97767  3.63176  0.11246  3.54105     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     22   2.97767  3.63176  0.11246  3.54105     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     23   0.13628  3.42382  2.83014  3.32964     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     24   3.48323  0.12439  3.53054  2.86534     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     25   3.13280  2.62321  3.17925  0.17172     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     26   0.13628  3.42382  2.83014  3.32964     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     27   3.48323  0.12439  3.53054  2.86534     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     28   2.11727  0.80411  1.21270  2.00423     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     29   3.48323  0.12439  3.53054  2.86534     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     30   2.97767  3.63176  0.11246  3.54105     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     31   3.48323  0.12439  3.53054  2.86534     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     32   3.13280  2.62321  3.17925  0.17172     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     33   2.97767  3.63176  0.11246  3.54105     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     34   0.13628  3.42382  2.83014  3.32964     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     35   0.13628  3.42382  2.83014  3.32964     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     36   3.48323  0.12439  3.53054  2.86534     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     37   3.13280  2.62321  3.17925  0.17172     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     38   3.13280  2.62321  3.17925  0.17172     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     39   0.13628  3.42382  2.83014  3.32964     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     40   0.13628  3.42382  2.83014  3.32964     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     41   2.97767  3.63176  0.11246  3.54105     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     42   3.48323  0.12439  3.53054  2.86534     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     43   0.13628  3.42382  2.83014  3.32964     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     44   3.13280  2.62321  3.17925  0.17172     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03596  4.03635  4.03635  1.46634  0.26236  1.09861  0.40547
+     45   0.13628  3.42382  2.83014  3.32964     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01814  4.01853        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:38:27 2012
+NSEQ  11
+EFFN  3.359619
+CKSUM 2519316989
+STATS LOCAL MSV       -8.0240  0.71932
+STATS LOCAL VITERBI   -7.6633  0.71932
+STATS LOCAL FORWARD   -4.2374  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.15520  1.46404  1.42040  1.55075
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  0.00000        *
+      1   0.14035  3.39202  2.80955  3.29480      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+      2   2.95571  3.59967  0.11586  3.50558      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+      3   2.10635  2.14324  1.09833  0.84953      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+      4   3.10049  2.60269  3.14819  0.17677      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+      5   2.95571  3.59967  0.11586  3.50558      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+      6   0.14035  3.39202  2.80955  3.29480      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+      7   3.44665  0.12860  3.49553  2.83884      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+      8   3.44665  0.12860  3.49553  2.83884      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+      9   3.10049  2.60269  3.14819  0.17677      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     10   3.44665  0.12860  3.49553  2.83884     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     11   2.95571  3.59967  0.11586  3.50558     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     12   0.14035  3.39202  2.80955  3.29480     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     13   0.14035  3.39202  2.80955  3.29480     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     14   3.10049  2.60269  3.14819  0.17677     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     15   3.44665  0.12860  3.49553  2.83884     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     16   0.14035  3.39202  2.80955  3.29480     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     17   2.95571  3.59967  0.11586  3.50558     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     18   2.95571  3.59967  0.11586  3.50558     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     19   3.10049  2.60269  3.14819  0.17677     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     20   0.14035  3.39202  2.80955  3.29480     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     21   2.95571  3.59967  0.11586  3.50558     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     22   2.95571  3.59967  0.11586  3.50558     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     23   0.14035  3.39202  2.80955  3.29480     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     24   0.14035  3.39202  2.80955  3.29480     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     25   3.10049  2.60269  3.14819  0.17677     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     26   0.14035  3.39202  2.80955  3.29480     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     27   3.44665  0.12860  3.49553  2.83884     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     28   3.44665  0.12860  3.49553  2.83884     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     29   3.44665  0.12860  3.49553  2.83884     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     30   2.95571  3.59967  0.11586  3.50558     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     31   3.44665  0.12860  3.49553  2.83884     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     32   3.10049  2.60269  3.14819  0.17677     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     33   2.95571  3.59967  0.11586  3.50558     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     34   0.14035  3.39202  2.80955  3.29480     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     35   0.14035  3.39202  2.80955  3.29480     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     36   3.44665  0.12860  3.49553  2.83884     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     37   3.10049  2.60269  3.14819  0.17677     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     38   3.10049  2.60269  3.14819  0.17677     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     39   0.14035  3.39202  2.80955  3.29480     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     40   0.14035  3.39202  2.80955  3.29480     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     41   2.95571  3.59967  0.11586  3.50558     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     42   3.44665  0.12860  3.49553  2.83884     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     43   0.14035  3.39202  2.80955  3.29480     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     44   3.10049  2.60269  3.14819  0.17677     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01811  4.01811  1.46634  0.26236  1.09861  0.40547
+     45   0.14035  3.39202  2.80955  3.29480     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01849  3.99996        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_sixteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:41:12 2012
+NSEQ  17
+EFFN  3.482178
+CKSUM 2034153312
+STATS LOCAL MSV       -7.4469  0.71933
+STATS LOCAL VITERBI   -7.5313  0.71933
+STATS LOCAL FORWARD   -4.1349  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21327  1.34010  1.60666  1.42546
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  0.00000        *
+      1   3.49032  0.12359  3.53732  2.87046      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+      2   3.13909  2.62721  3.18530  0.17075      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+      3   3.13909  2.62721  3.18530  0.17075      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+      4   2.57697  1.44715  2.64365  0.48182      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+      5   2.98191  3.63797  0.11181  3.54791      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+      6   0.13550  3.42999  2.83413  3.33641      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+      7   3.49032  0.12359  3.53732  2.87046      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+      8   3.49032  0.12359  3.53732  2.87046      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+      9   3.13909  2.62721  3.18530  0.17075      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     10   3.49032  0.12359  3.53732  2.87046     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     11   0.13550  3.42999  2.83413  3.33641     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     12   0.13550  3.42999  2.83413  3.33641     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     13   0.13550  3.42999  2.83413  3.33641     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     14   3.13909  2.62721  3.18530  0.17075     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     15   3.49032  0.12359  3.53732  2.87046     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     16   0.13550  3.42999  2.83413  3.33641     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     17   2.98191  3.63797  0.11181  3.54791     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     18   2.98191  3.63797  0.11181  3.54791     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     19   3.13909  2.62721  3.18530  0.17075     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     20   0.13550  3.42999  2.83413  3.33641     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     21   2.98191  3.63797  0.11181  3.54791     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     22   2.98191  3.63797  0.11181  3.54791     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     23   0.13550  3.42999  2.83413  3.33641     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     24   2.45185  0.76346  2.52404  1.00054     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     25   3.13909  2.62721  3.18530  0.17075     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     26   0.13550  3.42999  2.83413  3.33641     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     27   3.49032  0.12359  3.53732  2.87046     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     28   3.49032  0.12359  3.53732  2.87046     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     29   3.49032  0.12359  3.53732  2.87046     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     30   2.98191  3.63797  0.11181  3.54791     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     31   3.49032  0.12359  3.53732  2.87046     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     32   3.13909  2.62721  3.18530  0.17075     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     33   2.98191  3.63797  0.11181  3.54791     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     34   0.13550  3.42999  2.83413  3.33641     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     35   0.13550  3.42999  2.83413  3.33641     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     36   3.49032  0.12359  3.53732  2.87046     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     37   3.13909  2.62721  3.18530  0.17075     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     38   3.13909  2.62721  3.18530  0.17075     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     39   0.13550  3.42999  2.83413  3.33641     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     40   0.13550  3.42999  2.83413  3.33641     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     41   2.98191  3.63797  0.11181  3.54791     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     42   3.49032  0.12359  3.53732  2.87046     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     43   0.13550  3.42999  2.83413  3.33641     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     44   3.13909  2.62721  3.18530  0.17075     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     45   0.13550  3.42999  2.83413  3.33641     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01808  4.02216        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_tena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:39:10 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3889312004
+STATS LOCAL MSV       -7.2525  0.72777
+STATS LOCAL VITERBI   -8.2783  0.72777
+STATS LOCAL FORWARD   -3.5765  0.72777
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34300  1.40720  1.31247  1.49185
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_tenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:39:17 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2137028689
+STATS LOCAL MSV       -7.5021  0.72759
+STATS LOCAL VITERBI   -8.2393  0.72759
+STATS LOCAL FORWARD   -3.7046  0.72759
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28836  1.47387  1.25623  1.55820
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_tenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:39:25 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2593204555
+STATS LOCAL MSV       -7.9484  0.72006
+STATS LOCAL VITERBI   -7.7286  0.72006
+STATS LOCAL FORWARD   -4.3667  0.72006
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27778  1.47267  1.24715  1.58615
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   0.15719  3.27118  2.73043  3.16274     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_thirteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:40:40 2012
+NSEQ  45
+EFFN  3.309631
+CKSUM 2237963263
+STATS LOCAL MSV       -8.0951  0.71932
+STATS LOCAL VITERBI   -7.7143  0.71932
+STATS LOCAL FORWARD   -4.4333  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33739  1.45410  1.37864  1.37857
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  0.00000        *
+      1   2.90598  2.18502  2.96074  0.24712      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+      2   2.90598  2.18502  2.96074  0.24712      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+      3   3.08438  2.59245  3.13270  0.17936      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+      4   3.08438  2.59245  3.13270  0.17936      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+      5   2.94461  3.58351  0.11763  3.48773      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+      6   0.14245  3.37608  2.79920  3.27734      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+      7   3.42828  0.13078  3.47795  2.82548      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+      8   3.42828  0.13078  3.47795  2.82548      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+      9   3.08438  2.59245  3.13270  0.17936      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     10   3.42828  0.13078  3.47795  2.82548     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     11   2.94461  3.58351  0.11763  3.48773     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     12   2.94461  3.58351  0.11763  3.48773     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     13   0.14245  3.37608  2.79920  3.27734     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     14   3.08438  2.59245  3.13270  0.17936     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     15   3.42828  0.13078  3.47795  2.82548     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     16   0.14245  3.37608  2.79920  3.27734     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     17   2.94461  3.58351  0.11763  3.48773     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     18   2.94461  3.58351  0.11763  3.48773     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     19   3.08438  2.59245  3.13270  0.17936     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     20   0.14245  3.37608  2.79920  3.27734     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     21   2.94461  3.58351  0.11763  3.48773     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     22   2.94461  3.58351  0.11763  3.48773     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     23   2.94461  3.58351  0.11763  3.48773     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     24   0.14245  3.37608  2.79920  3.27734     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     25   3.08438  2.59245  3.13270  0.17936     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     26   0.14245  3.37608  2.79920  3.27734     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     27   3.42828  0.13078  3.47795  2.82548     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     28   3.42828  0.13078  3.47795  2.82548     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     29   3.42828  0.13078  3.47795  2.82548     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     30   2.94461  3.58351  0.11763  3.48773     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     31   3.42828  0.13078  3.47795  2.82548     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     32   3.08438  2.59245  3.13270  0.17936     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     33   2.94461  3.58351  0.11763  3.48773     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     34   0.14245  3.37608  2.79920  3.27734     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     35   0.14245  3.37608  2.79920  3.27734     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     36   3.42828  0.13078  3.47795  2.82548     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     37   3.08438  2.59245  3.13270  0.17936     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     38   3.08438  2.59245  3.13270  0.17936     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     39   0.14245  3.37608  2.79920  3.27734     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     40   0.14245  3.37608  2.79920  3.27734     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     41   2.94461  3.58351  0.11763  3.48773     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     42   3.42828  0.13078  3.47795  2.82548     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     43   0.14245  3.37608  2.79920  3.27734     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     44   3.08438  2.59245  3.13270  0.17936     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00908  4.00908  1.46634  0.26236  1.09861  0.40547
+     45   0.14245  3.37608  2.79920  3.27734     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01866  3.99077        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_thirty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:50:32 2012
+NSEQ  14
+EFFN  3.824707
+CKSUM 3896112458
+STATS LOCAL MSV       -7.1810  0.71932
+STATS LOCAL VITERBI   -7.6205  0.71932
+STATS LOCAL FORWARD   -3.9067  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.09067  1.45025  1.51531  1.56181
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  0.00000        *
+      1   0.31037  2.13809  2.54190  2.65605      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+      2   3.02946  0.26565  3.09100  1.96973      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+      3   3.24066  2.69161  3.28291  0.15599      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+      4   3.24066  2.69161  3.28291  0.15599      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+      5   3.04823  3.73576  0.10217  3.65627      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+      6   3.04823  3.73576  0.10217  3.65627      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+      7   3.24066  2.69161  3.28291  0.15599      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+      8   3.60274  0.11168  3.64471  2.95097      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+      9   3.24066  2.69161  3.28291  0.15599      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     10   2.26277  1.53314  0.55111  2.26556     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     11   0.12380  3.52833  2.89740  3.44436     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     12   0.12380  3.52833  2.89740  3.44436     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     13   0.12380  3.52833  2.89740  3.44436     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     14   3.24066  2.69161  3.28291  0.15599     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     15   3.60274  0.11168  3.64471  2.95097     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     16   1.47689  2.81563  0.44133  2.67934     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     17   1.52546  2.84390  0.41907  2.70873     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     18   3.04823  3.73576  0.10217  3.65627     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     19   3.60274  0.11168  3.64471  2.95097     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     20   0.12380  3.52833  2.89740  3.44436     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     21   0.12380  3.52833  2.89740  3.44436     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     22   3.04823  3.73576  0.10217  3.65627     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     23   0.12380  3.52833  2.89740  3.44436     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     24   0.12380  3.52833  2.89740  3.44436     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     25   0.25071  3.11793  2.05627  3.00427     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     26   0.12380  3.52833  2.89740  3.44436     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     27   3.60274  0.11168  3.64471  2.95097     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     28   3.60274  0.11168  3.64471  2.95097     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     29   3.60274  0.11168  3.64471  2.95097     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     30   3.04823  3.73576  0.10217  3.65627     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     31   3.60274  0.11168  3.64471  2.95097     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     32   3.24066  2.69161  3.28291  0.15599     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     33   3.04823  3.73576  0.10217  3.65627     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     34   0.12380  3.52833  2.89740  3.44436     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     35   0.12380  3.52833  2.89740  3.44436     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     36   3.60274  0.11168  3.64471  2.95097     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     37   3.24066  2.69161  3.28291  0.15599     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     38   3.24066  2.69161  3.28291  0.15599     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     39   0.12380  3.52833  2.89740  3.44436     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     40   0.12380  3.52833  2.89740  3.44436     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     41   3.04823  3.73576  0.10217  3.65627     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     42   3.60274  0.11168  3.64471  2.95097     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     43   0.12380  3.52833  2.89740  3.44436     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     44   3.24066  2.69161  3.28291  0.15599     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03376  4.09845  4.09845  1.46634  0.26236  1.09861  0.40547
+     45   0.12380  3.52833  2.89740  3.44436     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01702  4.08172        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_thirtyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:52:07 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 821444567
+STATS LOCAL MSV       -7.5104  0.72807
+STATS LOCAL VITERBI   -8.1263  0.72807
+STATS LOCAL FORWARD   -3.3114  0.72807
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.18728  1.52600  1.42796  1.43654
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_thirtyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:51:30 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 903928538
+STATS LOCAL MSV       -7.4717  0.72804
+STATS LOCAL VITERBI   -8.1980  0.72804
+STATS LOCAL FORWARD   -3.3187  0.72804
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.14072  1.46658  1.49206  1.49259
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_thirtyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:51:12 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1408254241
+STATS LOCAL MSV       -7.5052  0.72856
+STATS LOCAL VITERBI   -8.1127  0.72856
+STATS LOCAL FORWARD   -3.1802  0.72856
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.14389  1.51633  1.63368  1.32165
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_thirtynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:52:18 2012
+NSEQ  4
+EFFN  3.261719
+CKSUM 2899848815
+STATS LOCAL MSV       -7.9231  0.71933
+STATS LOCAL VITERBI   -7.6755  0.71933
+STATS LOCAL FORWARD   -4.1669  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27494  1.53557  1.37728  1.37453
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  0.00000        *
+      1   3.41037  0.13295  3.46079  2.81242      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      2   3.06875  2.58250  3.11766  0.18191      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      3   0.14453  3.36055  2.78910  3.26035      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      4   3.06875  2.58250  3.11766  0.18191      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      5   2.93372  3.56771  0.11938  3.47031      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      6   0.14453  3.36055  2.78910  3.26035      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      7   3.06875  2.58250  3.11766  0.18191      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      8   3.41037  0.13295  3.46079  2.81242      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      9   3.06875  2.58250  3.11766  0.18191      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     10   2.93372  3.56771  0.11938  3.47031     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     11   0.14453  3.36055  2.78910  3.26035     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     12   0.14453  3.36055  2.78910  3.26035     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     13   2.93372  3.56771  0.11938  3.47031     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     14   3.06875  2.58250  3.11766  0.18191     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     15   3.41037  0.13295  3.46079  2.81242     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     16   0.14453  3.36055  2.78910  3.26035     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     17   2.93372  3.56771  0.11938  3.47031     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     18   2.93372  3.56771  0.11938  3.47031     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     19   3.06875  2.58250  3.11766  0.18191     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     20   2.93372  3.56771  0.11938  3.47031     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     21   2.93372  3.56771  0.11938  3.47031     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     22   2.93372  3.56771  0.11938  3.47031     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     23   0.14453  3.36055  2.78910  3.26035     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     24   3.06875  2.58250  3.11766  0.18191     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     25   3.06875  2.58250  3.11766  0.18191     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     26   0.14453  3.36055  2.78910  3.26035     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     27   3.41037  0.13295  3.46079  2.81242     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     28   3.41037  0.13295  3.46079  2.81242     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     29   3.41037  0.13295  3.46079  2.81242     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     30   2.93372  3.56771  0.11938  3.47031     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     31   3.41037  0.13295  3.46079  2.81242     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     32   3.06875  2.58250  3.11766  0.18191     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     33   2.93372  3.56771  0.11938  3.47031     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     34   0.14453  3.36055  2.78910  3.26035     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     35   0.14453  3.36055  2.78910  3.26035     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     36   3.41037  0.13295  3.46079  2.81242     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     37   3.06875  2.58250  3.11766  0.18191     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     38   3.06875  2.58250  3.11766  0.18191     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     39   0.14453  3.36055  2.78910  3.26035     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     40   0.14453  3.36055  2.78910  3.26035     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     41   2.93372  3.56771  0.11938  3.47031     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     42   3.41037  0.13295  3.46079  2.81242     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     43   0.14453  3.36055  2.78910  3.26035     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     44   3.06875  2.58250  3.11766  0.18191     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     45   0.14453  3.36055  2.78910  3.26035     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01883  3.98187        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_thirtyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:50:41 2012
+NSEQ  4
+EFFN  3.246094
+CKSUM 3720395925
+STATS LOCAL MSV       -7.9190  0.71932
+STATS LOCAL VITERBI   -7.5891  0.71932
+STATS LOCAL FORWARD   -4.0230  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16374  1.39489  1.52365  1.50547
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  0.00000        *
+      1   3.06361  2.57923  3.11272  0.18276      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      2   3.06361  2.57923  3.11272  0.18276      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      3   0.14522  3.35543  2.78576  3.25475      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      4   0.14522  3.35543  2.78576  3.25475      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      5   2.93012  3.56249  0.11996  3.46456      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      6   0.14522  3.35543  2.78576  3.25475      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      7   3.40447  0.13368  3.45513  2.80810      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      8   3.40447  0.13368  3.45513  2.80810      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      9   3.06361  2.57923  3.11272  0.18276      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     10   3.40447  0.13368  3.45513  2.80810     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     11   0.14522  3.35543  2.78576  3.25475     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     12   0.14522  3.35543  2.78576  3.25475     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     13   0.14522  3.35543  2.78576  3.25475     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     14   3.06361  2.57923  3.11272  0.18276     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     15   3.40447  0.13368  3.45513  2.80810     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     16   0.14522  3.35543  2.78576  3.25475     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     17   2.93012  3.56249  0.11996  3.46456     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     18   2.93012  3.56249  0.11996  3.46456     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     19   3.06361  2.57923  3.11272  0.18276     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     20   2.93012  3.56249  0.11996  3.46456     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     21   2.93012  3.56249  0.11996  3.46456     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     22   2.93012  3.56249  0.11996  3.46456     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     23   0.14522  3.35543  2.78576  3.25475     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     24   3.40447  0.13368  3.45513  2.80810     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     25   3.06361  2.57923  3.11272  0.18276     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     26   0.14522  3.35543  2.78576  3.25475     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     27   3.40447  0.13368  3.45513  2.80810     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     28   3.40447  0.13368  3.45513  2.80810     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     29   3.40447  0.13368  3.45513  2.80810     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     30   2.93012  3.56249  0.11996  3.46456     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     31   3.40447  0.13368  3.45513  2.80810     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     32   3.06361  2.57923  3.11272  0.18276     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     33   2.93012  3.56249  0.11996  3.46456     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     34   0.14522  3.35543  2.78576  3.25475     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     35   0.14522  3.35543  2.78576  3.25475     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     36   3.40447  0.13368  3.45513  2.80810     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     37   3.06361  2.57923  3.11272  0.18276     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     38   3.06361  2.57923  3.11272  0.18276     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     39   0.14522  3.35543  2.78576  3.25475     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     40   0.14522  3.35543  2.78576  3.25475     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     41   2.93012  3.56249  0.11996  3.46456     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     42   3.40447  0.13368  3.45513  2.80810     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     43   0.14522  3.35543  2.78576  3.25475     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     44   3.06361  2.57923  3.11272  0.18276     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     45   0.14522  3.35543  2.78576  3.25475     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97895        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_thirtyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:51:56 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2736182793
+STATS LOCAL MSV       -7.4107  0.72852
+STATS LOCAL VITERBI   -8.1798  0.72852
+STATS LOCAL FORWARD   -3.3656  0.72852
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.14460  1.39311  1.71663  1.37170
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_thirtysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:51:43 2012
+NSEQ  4
+EFFN  3.238281
+CKSUM 4133877247
+STATS LOCAL MSV       -8.0819  0.71932
+STATS LOCAL VITERBI   -7.7210  0.71932
+STATS LOCAL FORWARD   -3.9403  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.01602  1.26778  1.79130  1.66195
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  0.00000        *
+      1   0.14557  3.35286  2.78409  3.25194      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      2   3.40150  0.13404  3.45229  2.80593      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      3   0.14557  3.35286  2.78409  3.25194      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      4   2.92831  3.55987  0.12026  3.46167      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      5   3.40150  0.13404  3.45229  2.80593      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      6   0.14557  3.35286  2.78409  3.25194      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      7   3.40150  0.13404  3.45229  2.80593      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      8   3.40150  0.13404  3.45229  2.80593      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      9   3.06103  2.57758  3.11024  0.18319      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     10   3.40150  0.13404  3.45229  2.80593     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     11   0.14557  3.35286  2.78409  3.25194     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     12   0.14557  3.35286  2.78409  3.25194     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     13   0.14557  3.35286  2.78409  3.25194     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     14   3.06103  2.57758  3.11024  0.18319     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     15   3.40150  0.13404  3.45229  2.80593     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     16   0.14557  3.35286  2.78409  3.25194     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     17   3.06103  2.57758  3.11024  0.18319     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     18   0.14557  3.35286  2.78409  3.25194     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     19   3.40150  0.13404  3.45229  2.80593     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     20   0.14557  3.35286  2.78409  3.25194     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     21   2.92831  3.55987  0.12026  3.46167     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     22   2.92831  3.55987  0.12026  3.46167     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     23   0.14557  3.35286  2.78409  3.25194     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     24   0.14557  3.35286  2.78409  3.25194     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     25   3.06103  2.57758  3.11024  0.18319     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     26   0.14557  3.35286  2.78409  3.25194     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     27   3.40150  0.13404  3.45229  2.80593     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     28   3.40150  0.13404  3.45229  2.80593     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     29   3.40150  0.13404  3.45229  2.80593     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     30   2.92831  3.55987  0.12026  3.46167     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     31   3.40150  0.13404  3.45229  2.80593     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     32   3.06103  2.57758  3.11024  0.18319     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     33   2.92831  3.55987  0.12026  3.46167     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     34   0.14557  3.35286  2.78409  3.25194     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     35   0.14557  3.35286  2.78409  3.25194     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     36   3.40150  0.13404  3.45229  2.80593     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     37   3.06103  2.57758  3.11024  0.18319     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     38   3.06103  2.57758  3.11024  0.18319     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     39   0.14557  3.35286  2.78409  3.25194     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     40   0.14557  3.35286  2.78409  3.25194     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     41   2.92831  3.55987  0.12026  3.46167     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     42   3.40150  0.13404  3.45229  2.80593     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     43   0.14557  3.35286  2.78409  3.25194     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     44   3.06103  2.57758  3.11024  0.18319     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     45   0.14557  3.35286  2.78409  3.25194     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01891  3.97749        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_thirtythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:51:00 2012
+NSEQ  13
+EFFN  3.665771
+CKSUM 1687158218
+STATS LOCAL MSV       -7.7994  0.71931
+STATS LOCAL VITERBI   -7.5483  0.71931
+STATS LOCAL FORWARD   -4.1612  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.14636  1.60969  1.61574  1.26049
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  0.00000        *
+      1   3.19466  2.66244  3.23871  0.16249      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+      2   3.55228  0.11685  3.59653  2.91498      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+      3   3.19466  2.66244  3.23871  0.16249      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+      4   3.19466  2.66244  3.23871  0.16249      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+      5   0.12892  3.48407  2.86897  3.39575      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+      6   0.12892  3.48407  2.86897  3.39575      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+      7   3.55228  0.11685  3.59653  2.91498      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+      8   3.55228  0.11685  3.59653  2.91498      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+      9   3.19466  2.66244  3.23871  0.16249      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     10   3.19466  2.66244  3.23871  0.16249     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     11   0.12892  3.48407  2.86897  3.39575     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     12   3.01863  3.69200  0.10636  3.60774     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     13   0.12892  3.48407  2.86897  3.39575     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     14   3.19466  2.66244  3.23871  0.16249     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     15   3.19466  2.66244  3.23871  0.16249     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     16   0.12892  3.48407  2.86897  3.39575     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     17   3.01863  3.69200  0.10636  3.60774     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     18   3.01863  3.69200  0.10636  3.60774     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     19   3.19466  2.66244  3.23871  0.16249     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     20   0.12892  3.48407  2.86897  3.39575     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     21   3.01863  3.69200  0.10636  3.60774     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     22   3.01863  3.69200  0.10636  3.60774     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     23   3.01863  3.69200  0.10636  3.60774     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     24   0.12892  3.48407  2.86897  3.39575     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     25   3.19466  2.66244  3.23871  0.16249     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     26   0.12892  3.48407  2.86897  3.39575     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     27   3.55228  0.11685  3.59653  2.91498     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     28   3.55228  0.11685  3.59653  2.91498     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     29   2.50281  0.69631  2.57448  1.06848     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     30   2.07539  3.16927  0.24195  3.05001     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     31   3.55228  0.11685  3.59653  2.91498     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     32   3.19466  2.66244  3.23871  0.16249     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     33   0.12892  3.48407  2.86897  3.39575     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     34   0.12892  3.48407  2.86897  3.39575     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     35   0.12892  3.48407  2.86897  3.39575     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     36   3.55228  0.11685  3.59653  2.91498     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     37   3.19466  2.66244  3.23871  0.16249     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     38   3.19466  2.66244  3.23871  0.16249     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     39   0.12892  3.48407  2.86897  3.39575     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     40   0.12892  3.48407  2.86897  3.39575     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     41   3.01863  3.69200  0.10636  3.60774     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     42   2.51087  0.67639  2.58247  1.09432     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     43   0.12892  3.48407  2.86897  3.39575     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     44   3.19466  2.66244  3.23871  0.16249     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03469  4.07172  4.07172  1.46634  0.26236  1.09861  0.40547
+     45   0.12892  3.48407  2.86897  3.39575     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01750  4.05452        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_thirtytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:50:50 2012
+NSEQ  11
+EFFN  3.563721
+CKSUM 3433264437
+STATS LOCAL MSV       -7.6236  0.71933
+STATS LOCAL VITERBI   -7.7838  0.71933
+STATS LOCAL FORWARD   -4.0505  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11520  1.33630  1.60008  1.57284
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  0.00000        *
+      1   0.41521  2.55555  2.39198  1.76783      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+      2   2.49900  0.66671  2.57079  1.11486      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+      3   3.16410  2.64307  3.20934  0.16697      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+      4   2.99857  3.66245  0.10931  3.57500      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+      5   2.99857  3.66245  0.10931  3.57500      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+      6   0.13248  3.45442  2.84988  3.36320      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+      7   3.51834  0.12049  3.56411  2.89064      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+      8   3.51834  0.12049  3.56411  2.89064      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+      9   3.16410  2.64307  3.20934  0.16697      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     10   3.51834  0.12049  3.56411  2.89064     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     11   0.13248  3.45442  2.84988  3.36320     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     12   0.13248  3.45442  2.84988  3.36320     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     13   0.13248  3.45442  2.84988  3.36320     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     14   3.16410  2.64307  3.20934  0.16697     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     15   3.51834  0.12049  3.56411  2.89064     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     16   0.13248  3.45442  2.84988  3.36320     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     17   0.13248  3.45442  2.84988  3.36320     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     18   2.99857  3.66245  0.10931  3.57500     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     19   3.51834  0.12049  3.56411  2.89064     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     20   0.13248  3.45442  2.84988  3.36320     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     21   0.13248  3.45442  2.84988  3.36320     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     22   2.99857  3.66245  0.10931  3.57500     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     23   2.99857  3.66245  0.10931  3.57500     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     24   2.51413  1.25337  2.58307  0.58343     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     25   3.16410  2.64307  3.20934  0.16697     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     26   0.13248  3.45442  2.84988  3.36320     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     27   3.51834  0.12049  3.56411  2.89064     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     28   3.51834  0.12049  3.56411  2.89064     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     29   3.51834  0.12049  3.56411  2.89064     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     30   2.99857  3.66245  0.10931  3.57500     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     31   3.51834  0.12049  3.56411  2.89064     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     32   3.16410  2.64307  3.20934  0.16697     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     33   2.99857  3.66245  0.10931  3.57500     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     34   0.13248  3.45442  2.84988  3.36320     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     35   0.13248  3.45442  2.84988  3.36320     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     36   3.51834  0.12049  3.56411  2.89064     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     37   3.16410  2.64307  3.20934  0.16697     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     38   3.16410  2.64307  3.20934  0.16697     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     39   0.13248  3.45442  2.84988  3.36320     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     40   0.13248  3.45442  2.84988  3.36320     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     41   2.99857  3.66245  0.10931  3.57500     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     42   3.51834  0.12049  3.56411  2.89064     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     43   0.13248  3.45442  2.84988  3.36320     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     44   3.16410  2.64307  3.20934  0.16697     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03532  4.05417  4.05417  1.46634  0.26236  1.09861  0.40547
+     45   0.13248  3.45442  2.84988  3.36320     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01781  4.03667        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:37:52 2012
+NSEQ  10
+EFFN  3.208008
+CKSUM 2628807988
+STATS LOCAL MSV       -8.0042  0.71934
+STATS LOCAL VITERBI   -7.5753  0.71934
+STATS LOCAL FORWARD   -4.3292  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27666  1.46872  1.30815  1.51188
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  0.00000        *
+      1   2.92124  3.54964  0.12142  3.45039      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      2   2.92124  3.54964  0.12142  3.45039      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      3   3.05099  2.57118  3.10057  0.18486      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      4   3.05099  2.57118  3.10057  0.18486      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      5   2.92124  3.54964  0.12142  3.45039      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      6   0.14694  3.34284  2.77755  3.24098      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      7   3.38993  0.13548  3.44120  2.79746      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      8   3.38993  0.13548  3.44120  2.79746      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      9   3.05099  2.57118  3.10057  0.18486      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     10   3.38993  0.13548  3.44120  2.79746     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     11   2.92124  3.54964  0.12142  3.45039     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     12   0.14694  3.34284  2.77755  3.24098     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     13   0.14694  3.34284  2.77755  3.24098     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     14   3.05099  2.57118  3.10057  0.18486     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     15   3.38993  0.13548  3.44120  2.79746     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     16   0.14694  3.34284  2.77755  3.24098     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     17   2.92124  3.54964  0.12142  3.45039     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     18   2.92124  3.54964  0.12142  3.45039     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     19   3.05099  2.57118  3.10057  0.18486     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     20   0.14694  3.34284  2.77755  3.24098     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     21   2.92124  3.54964  0.12142  3.45039     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     22   2.92124  3.54964  0.12142  3.45039     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     23   2.92124  3.54964  0.12142  3.45039     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     24   0.14694  3.34284  2.77755  3.24098     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     25   3.05099  2.57118  3.10057  0.18486     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     26   0.14694  3.34284  2.77755  3.24098     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     27   3.38993  0.13548  3.44120  2.79746     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     28   3.38993  0.13548  3.44120  2.79746     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     29   3.38993  0.13548  3.44120  2.79746     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     30   2.92124  3.54964  0.12142  3.45039     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     31   3.38993  0.13548  3.44120  2.79746     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     32   3.05099  2.57118  3.10057  0.18486     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     33   2.92124  3.54964  0.12142  3.45039     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     34   0.14694  3.34284  2.77755  3.24098     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     35   0.14694  3.34284  2.77755  3.24098     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     36   3.38993  0.13548  3.44120  2.79746     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     37   3.05099  2.57118  3.10057  0.18486     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     38   3.05099  2.57118  3.10057  0.18486     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     39   0.14694  3.34284  2.77755  3.24098     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     40   0.14694  3.34284  2.77755  3.24098     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     41   2.92124  3.54964  0.12142  3.45039     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     42   3.38993  0.13548  3.44120  2.79746     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     43   0.14694  3.34284  2.77755  3.24098     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     44   3.05099  2.57118  3.10057  0.18486     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     45   0.14694  3.34284  2.77755  3.24098     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01902  3.97180        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_twelve_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:40:28 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2950196185
+STATS LOCAL MSV       -8.0668  0.72027
+STATS LOCAL VITERBI   -7.7412  0.72027
+STATS LOCAL FORWARD   -4.2882  0.72027
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34060  1.39231  1.37928  1.43526
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   0.15719  3.27118  2.73043  3.16274     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_twenty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:42:05 2012
+NSEQ  7
+EFFN  3.407715
+CKSUM 1320832072
+STATS LOCAL MSV       -7.1647  0.71932
+STATS LOCAL VITERBI   -7.6126  0.71932
+STATS LOCAL FORWARD   -4.1960  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.20916  1.61576  1.43114  1.33266
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  0.00000        *
+      1   0.13840  3.40710  2.81933  3.31132      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+      2   3.11579  2.61241  3.16290  0.17436      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+      3   3.11579  2.61241  3.16290  0.17436      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+      4   2.23817  2.20087  1.48347  0.58737      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+      5   2.96616  3.61492  0.11423  3.52243      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+      6   0.13840  3.40710  2.81933  3.31132      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+      7   3.11579  2.61241  3.16290  0.17436      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+      8   3.46401  0.12658  3.51215  2.85144      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+      9   3.11579  2.61241  3.16290  0.17436      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     10   2.96616  3.61492  0.11423  3.52243     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     11   0.13840  3.40710  2.81933  3.31132     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     12   0.13840  3.40710  2.81933  3.31132     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     13   0.13840  3.40710  2.81933  3.31132     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     14   3.11579  2.61241  3.16290  0.17436     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     15   3.46401  0.12658  3.51215  2.85144     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     16   0.13840  3.40710  2.81933  3.31132     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     17   2.96616  3.61492  0.11423  3.52243     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     18   2.96616  3.61492  0.11423  3.52243     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     19   3.11579  2.61241  3.16290  0.17436     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     20   2.96616  3.61492  0.11423  3.52243     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     21   2.96616  3.61492  0.11423  3.52243     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     22   2.96616  3.61492  0.11423  3.52243     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     23   0.13840  3.40710  2.81933  3.31132     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     24   3.11579  2.61241  3.16290  0.17436     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     25   3.11579  2.61241  3.16290  0.17436     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     26   0.13840  3.40710  2.81933  3.31132     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     27   3.46401  0.12658  3.51215  2.85144     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     28   3.46401  0.12658  3.51215  2.85144     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     29   3.46401  0.12658  3.51215  2.85144     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     30   2.96616  3.61492  0.11423  3.52243     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     31   3.46401  0.12658  3.51215  2.85144     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     32   3.11579  2.61241  3.16290  0.17436     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     33   2.96616  3.61492  0.11423  3.52243     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     34   0.13840  3.40710  2.81933  3.31132     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     35   0.13840  3.40710  2.81933  3.31132     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     36   3.46401  0.12658  3.51215  2.85144     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     37   3.11579  2.61241  3.16290  0.17436     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     38   3.11579  2.61241  3.16290  0.17436     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     39   0.13840  3.40710  2.81933  3.31132     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     40   0.13840  3.40710  2.81933  3.31132     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     41   2.96616  3.61492  0.11423  3.52243     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     42   3.46401  0.12658  3.51215  2.85144     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     43   0.13840  3.40710  2.81933  3.31132     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     44   3.11579  2.61241  3.16290  0.17436     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     45   0.13840  3.40710  2.81933  3.31132     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01832  4.00873        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_twentyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:50:03 2012
+NSEQ  4
+EFFN  3.386719
+CKSUM 1317092738
+STATS LOCAL MSV       -7.5849  0.71933
+STATS LOCAL VITERBI   -7.6421  0.71933
+STATS LOCAL FORWARD   -4.1909  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.14008  1.45832  1.51760  1.47691
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  0.00000        *
+      1   0.97254  2.15089  2.16655  0.93923      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      2   3.45647  0.12746  3.50493  2.84597      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      3   3.10913  2.60819  3.15650  0.17540      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      4   3.10913  2.60819  3.15650  0.17540      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      5   2.96162  3.60830  0.11494  3.51511      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      6   2.96162  3.60830  0.11494  3.51511      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      7   3.10913  2.60819  3.15650  0.17540      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      8   3.45647  0.12746  3.50493  2.84597      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      9   3.10913  2.60819  3.15650  0.17540      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     10   3.45647  0.12746  3.50493  2.84597     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     11   0.13925  3.40055  2.81508  3.30414     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     12   0.13925  3.40055  2.81508  3.30414     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     13   0.13925  3.40055  2.81508  3.30414     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     14   3.10913  2.60819  3.15650  0.17540     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     15   3.45647  0.12746  3.50493  2.84597     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     16   0.13925  3.40055  2.81508  3.30414     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     17   2.96162  3.60830  0.11494  3.51511     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     18   2.96162  3.60830  0.11494  3.51511     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     19   3.10913  2.60819  3.15650  0.17540     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     20   0.13925  3.40055  2.81508  3.30414     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     21   2.96162  3.60830  0.11494  3.51511     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     22   2.96162  3.60830  0.11494  3.51511     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     23   0.13925  3.40055  2.81508  3.30414     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     24   0.13925  3.40055  2.81508  3.30414     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     25   0.13925  3.40055  2.81508  3.30414     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     26   0.13925  3.40055  2.81508  3.30414     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     27   3.45647  0.12746  3.50493  2.84597     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     28   3.45647  0.12746  3.50493  2.84597     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     29   3.45647  0.12746  3.50493  2.84597     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     30   2.96162  3.60830  0.11494  3.51511     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     31   3.45647  0.12746  3.50493  2.84597     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     32   3.10913  2.60819  3.15650  0.17540     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     33   2.96162  3.60830  0.11494  3.51511     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     34   0.13925  3.40055  2.81508  3.30414     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     35   0.13925  3.40055  2.81508  3.30414     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     36   3.45647  0.12746  3.50493  2.84597     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     37   3.10913  2.60819  3.15650  0.17540     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     38   3.10913  2.60819  3.15650  0.17540     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     39   0.13925  3.40055  2.81508  3.30414     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     40   0.13925  3.40055  2.81508  3.30414     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     41   2.96162  3.60830  0.11494  3.51511     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     42   3.45647  0.12746  3.50493  2.84597     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     43   0.13925  3.40055  2.81508  3.30414     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     44   3.10913  2.60819  3.15650  0.17540     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     45   0.13925  3.40055  2.81508  3.30414     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01839  4.00492        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_twentyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:43:23 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3566021374
+STATS LOCAL MSV       -7.5111  0.72847
+STATS LOCAL VITERBI   -8.0506  0.72847
+STATS LOCAL FORWARD   -3.4783  0.72847
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.18781  1.51856  1.56094  1.32371
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_twentyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:43:12 2012
+NSEQ  6
+EFFN  3.249023
+CKSUM 3895891952
+STATS LOCAL MSV       -7.9043  0.71932
+STATS LOCAL VITERBI   -7.7253  0.71932
+STATS LOCAL FORWARD   -3.9552  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.06243  1.32866  1.69363  1.58134
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  0.00000        *
+      1   0.14509  3.35639  2.78639  3.25580      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      2   3.40558  0.13354  3.45619  2.80891      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      3   3.06457  2.57984  3.11364  0.18260      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      4   2.93080  3.56347  0.11985  3.46564      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      5   0.14509  3.35639  2.78639  3.25580      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      6   0.14509  3.35639  2.78639  3.25580      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      7   3.06457  2.57984  3.11364  0.18260      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      8   3.40558  0.13354  3.45619  2.80891      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      9   3.06457  2.57984  3.11364  0.18260      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     10   3.40558  0.13354  3.45619  2.80891     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     11   0.14509  3.35639  2.78639  3.25580     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     12   0.14509  3.35639  2.78639  3.25580     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     13   0.14509  3.35639  2.78639  3.25580     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     14   3.06457  2.57984  3.11364  0.18260     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     15   3.40558  0.13354  3.45619  2.80891     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     16   0.14509  3.35639  2.78639  3.25580     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     17   2.93080  3.56347  0.11985  3.46564     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     18   2.93080  3.56347  0.11985  3.46564     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     19   3.40558  0.13354  3.45619  2.80891     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     20   0.14509  3.35639  2.78639  3.25580     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     21   0.14509  3.35639  2.78639  3.25580     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     22   2.93080  3.56347  0.11985  3.46564     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     23   0.14509  3.35639  2.78639  3.25580     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     24   3.40558  0.13354  3.45619  2.80891     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     25   3.06457  2.57984  3.11364  0.18260     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     26   0.14509  3.35639  2.78639  3.25580     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     27   3.40558  0.13354  3.45619  2.80891     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     28   3.40558  0.13354  3.45619  2.80891     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     29   3.40558  0.13354  3.45619  2.80891     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     30   2.93080  3.56347  0.11985  3.46564     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     31   3.40558  0.13354  3.45619  2.80891     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     32   3.06457  2.57984  3.11364  0.18260     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     33   2.93080  3.56347  0.11985  3.46564     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     34   0.14509  3.35639  2.78639  3.25580     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     35   0.14509  3.35639  2.78639  3.25580     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     36   3.40558  0.13354  3.45619  2.80891     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     37   3.06457  2.57984  3.11364  0.18260     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     38   3.06457  2.57984  3.11364  0.18260     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     39   0.14509  3.35639  2.78639  3.25580     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     40   0.14509  3.35639  2.78639  3.25580     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     41   2.93080  3.56347  0.11985  3.46564     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     42   3.40558  0.13354  3.45619  2.80891     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     43   0.14509  3.35639  2.78639  3.25580     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     44   3.06457  2.57984  3.11364  0.18260     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     45   0.14509  3.35639  2.78639  3.25580     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01887  3.97950        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_twentynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:50:15 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 959618205
+STATS LOCAL MSV       -7.5275  0.72803
+STATS LOCAL VITERBI   -8.1791  0.72803
+STATS LOCAL FORWARD   -3.5182  0.72803
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.19191  1.40243  1.49512  1.48662
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_twentyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:42:14 2012
+NSEQ  4
+EFFN  3.628906
+CKSUM 1397389222
+STATS LOCAL MSV       -7.5313  0.71931
+STATS LOCAL VITERBI   -7.5260  0.71931
+STATS LOCAL FORWARD   -4.0511  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.20588  1.55182  1.57438  1.26736
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  0.00000        *
+      1   3.18371  2.65550  3.22819  0.16408      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+      2   2.45954  0.94809  2.53092  0.80417      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+      3   3.18371  2.65550  3.22819  0.16408      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+      4   3.18371  2.65550  3.22819  0.16408      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+      5   3.01149  3.68146  0.10740  3.59606      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+      6   0.13018  3.47348  2.86215  3.38411      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+      7   3.18371  2.65550  3.22819  0.16408      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+      8   3.54016  0.11814  3.58496  2.90630      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+      9   3.18371  2.65550  3.22819  0.16408      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     10   2.10036  1.01279  0.96329  2.01931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     11   0.13018  3.47348  2.86215  3.38411     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     12   0.13018  3.47348  2.86215  3.38411     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     13   0.13018  3.47348  2.86215  3.38411     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     14   3.18371  2.65550  3.22819  0.16408     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     15   3.54016  0.11814  3.58496  2.90630     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     16   0.13018  3.47348  2.86215  3.38411     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     17   3.01149  3.68146  0.10740  3.59606     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     18   3.01149  3.68146  0.10740  3.59606     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     19   3.18371  2.65550  3.22819  0.16408     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     20   0.13018  3.47348  2.86215  3.38411     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     21   3.01149  3.68146  0.10740  3.59606     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     22   3.01149  3.68146  0.10740  3.59606     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     23   0.13018  3.47348  2.86215  3.38411     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     24   3.18371  2.65550  3.22819  0.16408     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     25   3.18371  2.65550  3.22819  0.16408     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     26   0.13018  3.47348  2.86215  3.38411     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     27   3.54016  0.11814  3.58496  2.90630     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     28   3.54016  0.11814  3.58496  2.90630     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     29   3.54016  0.11814  3.58496  2.90630     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     30   3.01149  3.68146  0.10740  3.59606     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     31   3.54016  0.11814  3.58496  2.90630     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     32   3.18371  2.65550  3.22819  0.16408     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     33   3.01149  3.68146  0.10740  3.59606     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     34   0.13018  3.47348  2.86215  3.38411     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     35   0.13018  3.47348  2.86215  3.38411     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     36   3.54016  0.11814  3.58496  2.90630     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     37   3.18371  2.65550  3.22819  0.16408     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     38   3.18371  2.65550  3.22819  0.16408     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     39   0.13018  3.47348  2.86215  3.38411     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     40   0.13018  3.47348  2.86215  3.38411     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     41   3.01149  3.68146  0.10740  3.59606     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     42   3.54016  0.11814  3.58496  2.90630     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     43   0.13018  3.47348  2.86215  3.38411     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     44   3.18371  2.65550  3.22819  0.16408     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06541  4.06541  1.46634  0.26236  1.09861  0.40547
+     45   0.13018  3.47348  2.86215  3.38411     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01761  4.04811        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_twentyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:49:49 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3747538114
+STATS LOCAL MSV       -7.3914  0.72783
+STATS LOCAL VITERBI   -8.1969  0.72783
+STATS LOCAL FORWARD   -3.5689  0.72783
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.24119  1.34702  1.43309  1.54940
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_twentysixa_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:43:36 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2411904908
+STATS LOCAL MSV       -7.4041  0.72805
+STATS LOCAL VITERBI   -8.2219  0.72805
+STATS LOCAL FORWARD   -3.5707  0.72805
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29063  1.39752  1.43320  1.43067
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_twentysixb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:43:48 2012
+NSEQ  8
+EFFN  3.332031
+CKSUM 2867775014
+STATS LOCAL MSV       -8.0283  0.71933
+STATS LOCAL VITERBI   -7.4674  0.71933
+STATS LOCAL FORWARD   -4.1993  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.19256  1.39099  1.41860  1.58146
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  0.00000        *
+      1   3.43655  0.12980  3.48587  2.83150      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      2   3.43655  0.12980  3.48587  2.83150      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      3   0.14150  3.38325  2.80387  3.28520      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      4   3.09163  2.59706  3.13967  0.17819      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      5   2.94961  3.59079  0.11683  3.49577      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      6   2.94961  3.59079  0.11683  3.49577      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      7   3.09163  2.59706  3.13967  0.17819      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      8   3.43655  0.12980  3.48587  2.83150      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      9   3.09163  2.59706  3.13967  0.17819      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     10   3.43655  0.12980  3.48587  2.83150     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     11   0.14150  3.38325  2.80387  3.28520     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     12   0.14150  3.38325  2.80387  3.28520     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     13   0.14150  3.38325  2.80387  3.28520     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     14   3.09163  2.59706  3.13967  0.17819     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     15   3.43655  0.12980  3.48587  2.83150     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     16   0.14150  3.38325  2.80387  3.28520     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     17   2.94961  3.59079  0.11683  3.49577     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     18   2.94961  3.59079  0.11683  3.49577     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     19   3.09163  2.59706  3.13967  0.17819     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     20   0.14150  3.38325  2.80387  3.28520     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     21   2.94961  3.59079  0.11683  3.49577     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     22   2.94961  3.59079  0.11683  3.49577     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     23   0.14150  3.38325  2.80387  3.28520     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     24   0.86115  2.51680  0.90816  2.37150     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     25   2.94961  3.59079  0.11683  3.49577     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     26   0.14150  3.38325  2.80387  3.28520     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     27   3.43655  0.12980  3.48587  2.83150     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     28   3.43655  0.12980  3.48587  2.83150     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     29   3.43655  0.12980  3.48587  2.83150     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     30   2.94961  3.59079  0.11683  3.49577     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     31   3.43655  0.12980  3.48587  2.83150     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     32   3.09163  2.59706  3.13967  0.17819     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     33   2.94961  3.59079  0.11683  3.49577     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     34   0.14150  3.38325  2.80387  3.28520     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     35   0.14150  3.38325  2.80387  3.28520     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     36   3.43655  0.12980  3.48587  2.83150     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     37   3.09163  2.59706  3.13967  0.17819     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     38   3.09163  2.59706  3.13967  0.17819     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     39   0.14150  3.38325  2.80387  3.28520     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     40   0.14150  3.38325  2.80387  3.28520     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     41   2.94961  3.59079  0.11683  3.49577     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     42   3.43655  0.12980  3.48587  2.83150     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     43   0.14150  3.38325  2.80387  3.28520     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     44   3.09163  2.59706  3.13967  0.17819     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     45   0.14150  3.38325  2.80387  3.28520     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01858  3.99490        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_twentysixc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:43:56 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3021357813
+STATS LOCAL MSV       -7.5196  0.72804
+STATS LOCAL VITERBI   -8.2284  0.72804
+STATS LOCAL FORWARD   -3.6517  0.72804
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.14433  1.46472  1.49189  1.48955
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_twentysixd_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:44:04 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2296427277
+STATS LOCAL MSV       -7.3838  0.72812
+STATS LOCAL VITERBI   -8.0939  0.72812
+STATS LOCAL FORWARD   -3.4603  0.72812
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.14562  1.39986  1.56210  1.48878
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_twentythreea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:42:42 2012
+NSEQ  8
+EFFN  3.417969
+CKSUM 2052812395
+STATS LOCAL MSV       -7.6651  0.71932
+STATS LOCAL VITERBI   -7.6410  0.71932
+STATS LOCAL FORWARD   -4.1247  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.05490  1.44788  1.72778  1.43118
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  0.00000        *
+      1   0.13799  3.41029  2.82139  3.31481      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+      2   3.46768  0.12616  3.51566  2.85409      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+      3   3.11902  2.61447  3.16601  0.17385      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+      4   3.11902  2.61447  3.16601  0.17385      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+      5   2.96836  3.61813  0.11389  3.52598      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+      6   0.13799  3.41029  2.82139  3.31481      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+      7   3.11902  2.61447  3.16601  0.17385      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+      8   3.46768  0.12616  3.51566  2.85409      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+      9   3.11902  2.61447  3.16601  0.17385      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     10   3.46768  0.12616  3.51566  2.85409     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     11   0.13799  3.41029  2.82139  3.31481     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     12   0.13799  3.41029  2.82139  3.31481     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     13   0.13799  3.41029  2.82139  3.31481     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     14   3.11902  2.61447  3.16601  0.17385     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     15   3.46768  0.12616  3.51566  2.85409     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     16   0.13799  3.41029  2.82139  3.31481     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     17   2.96836  3.61813  0.11389  3.52598     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     18   0.13799  3.41029  2.82139  3.31481     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     19   3.11902  2.61447  3.16601  0.17385     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     20   0.13799  3.41029  2.82139  3.31481     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     21   0.13799  3.41029  2.82139  3.31481     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     22   2.96836  3.61813  0.11389  3.52598     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     23   0.13799  3.41029  2.82139  3.31481     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     24   2.28022  1.71480  0.48040  2.31058     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     25   3.11902  2.61447  3.16601  0.17385     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     26   0.13799  3.41029  2.82139  3.31481     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     27   3.46768  0.12616  3.51566  2.85409     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     28   3.46768  0.12616  3.51566  2.85409     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     29   3.46768  0.12616  3.51566  2.85409     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     30   2.96836  3.61813  0.11389  3.52598     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     31   3.46768  0.12616  3.51566  2.85409     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     32   3.11902  2.61447  3.16601  0.17385     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     33   2.96836  3.61813  0.11389  3.52598     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     34   0.13799  3.41029  2.82139  3.31481     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     35   0.13799  3.41029  2.82139  3.31481     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     36   3.46768  0.12616  3.51566  2.85409     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     37   3.11902  2.61447  3.16601  0.17385     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     38   3.11902  2.61447  3.16601  0.17385     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     39   0.13799  3.41029  2.82139  3.31481     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     40   0.13799  3.41029  2.82139  3.31481     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     41   2.96836  3.61813  0.11389  3.52598     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     42   3.46768  0.12616  3.51566  2.85409     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     43   0.13799  3.41029  2.82139  3.31481     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     44   3.11902  2.61447  3.16601  0.17385     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     45   0.13799  3.41029  2.82139  3.31481     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01829  4.01059        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_twentythreeb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:42:49 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3714360911
+STATS LOCAL MSV       -7.3220  0.72828
+STATS LOCAL VITERBI   -8.2000  0.72828
+STATS LOCAL FORWARD   -3.3881  0.72828
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.10174  1.34252  1.71585  1.48409
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_twentythreec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:42:58 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 548036852
+STATS LOCAL MSV       -7.4166  0.72832
+STATS LOCAL VITERBI   -8.1528  0.72832
+STATS LOCAL FORWARD   -3.3308  0.72832
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.14403  1.39730  1.63681  1.42877
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_twentytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:42:30 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2216831043
+STATS LOCAL MSV       -8.0377  0.72044
+STATS LOCAL VITERBI   -7.8223  0.72044
+STATS LOCAL FORWARD   -4.0104  0.72044
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28082  1.38789  1.52204  1.36915
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.86982  3.47591  0.13017  3.36931      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   3.30705  0.14631  3.36166  2.73626     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:37:40 2012
+NSEQ  16
+EFFN  3.214844
+CKSUM 1763961939
+STATS LOCAL MSV       -8.1256  0.71931
+STATS LOCAL VITERBI   -7.7756  0.71931
+STATS LOCAL FORWARD   -4.2638  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27663  1.46874  1.30814  1.51192
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  0.00000        *
+      1   2.92285  3.55196  0.12115  3.45295      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      2   2.92285  3.55196  0.12115  3.45295      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      3   3.05326  2.57263  3.10276  0.18448      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      4   3.05326  2.57263  3.10276  0.18448      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      5   2.92285  3.55196  0.12115  3.45295      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      6   0.14663  3.34511  2.77903  3.24347      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      7   3.39256  0.13515  3.44371  2.79938      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      8   3.39256  0.13515  3.44371  2.79938      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      9   3.05326  2.57263  3.10276  0.18448      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     10   3.39256  0.13515  3.44371  2.79938     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     11   2.92285  3.55196  0.12115  3.45295     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     12   2.92285  3.55196  0.12115  3.45295     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     13   0.14663  3.34511  2.77903  3.24347     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     14   3.05326  2.57263  3.10276  0.18448     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     15   3.39256  0.13515  3.44371  2.79938     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     16   0.14663  3.34511  2.77903  3.24347     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     17   2.92285  3.55196  0.12115  3.45295     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     18   2.92285  3.55196  0.12115  3.45295     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     19   3.05326  2.57263  3.10276  0.18448     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     20   0.14663  3.34511  2.77903  3.24347     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     21   2.92285  3.55196  0.12115  3.45295     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     22   2.92285  3.55196  0.12115  3.45295     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     23   0.14663  3.34511  2.77903  3.24347     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     24   0.14663  3.34511  2.77903  3.24347     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     25   3.05326  2.57263  3.10276  0.18448     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     26   0.14663  3.34511  2.77903  3.24347     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     27   3.39256  0.13515  3.44371  2.79938     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     28   3.39256  0.13515  3.44371  2.79938     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     29   3.39256  0.13515  3.44371  2.79938     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     30   2.92285  3.55196  0.12115  3.45295     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     31   3.39256  0.13515  3.44371  2.79938     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     32   3.05326  2.57263  3.10276  0.18448     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     33   2.92285  3.55196  0.12115  3.45295     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     34   0.14663  3.34511  2.77903  3.24347     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     35   0.14663  3.34511  2.77903  3.24347     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     36   3.39256  0.13515  3.44371  2.79938     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     37   3.05326  2.57263  3.10276  0.18448     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     38   3.05326  2.57263  3.10276  0.18448     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     39   0.14663  3.34511  2.77903  3.24347     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     40   0.14663  3.34511  2.77903  3.24347     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     41   2.92285  3.55196  0.12115  3.45295     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     42   3.39256  0.13515  3.44371  2.79938     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     43   0.14663  3.34511  2.77903  3.24347     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     44   3.05326  2.57263  3.10276  0.18448     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     45   0.14663  3.34511  2.77903  3.24347     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01899  3.97309        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zeroa_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:55:27 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 986683763
+STATS LOCAL MSV       -7.8857  0.72021
+STATS LOCAL VITERBI   -7.8118  0.72021
+STATS LOCAL FORWARD   -4.2409  0.72021
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34327  1.26704  1.45137  1.50015
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zerob_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:56:50 2012
+NSEQ  8
+EFFN  3.355469
+CKSUM 269870853
+STATS LOCAL MSV       -7.9646  0.71932
+STATS LOCAL VITERBI   -7.7466  0.71932
+STATS LOCAL FORWARD   -4.2283  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.31364  1.25878  1.49917  1.49681
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  0.00000        *
+      1   3.09916  2.60185  3.14691  0.17699      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+      2   3.44514  0.12878  3.49408  2.83774      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+      3   3.09916  2.60185  3.14691  0.17699      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+      4   3.09916  2.60185  3.14691  0.17699      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+      5   2.95480  3.59834  0.11601  3.50411      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+      6   0.14052  3.39070  2.80870  3.29336      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+      7   3.44514  0.12878  3.49408  2.83774      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+      8   3.44514  0.12878  3.49408  2.83774      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+      9   3.09916  2.60185  3.14691  0.17699      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     10   3.44514  0.12878  3.49408  2.83774     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     11   0.14052  3.39070  2.80870  3.29336     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     12   0.86019  2.52068  0.90746  2.37550     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     13   0.14052  3.39070  2.80870  3.29336     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     14   3.09916  2.60185  3.14691  0.17699     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     15   3.44514  0.12878  3.49408  2.83774     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     16   0.14052  3.39070  2.80870  3.29336     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     17   2.95480  3.59834  0.11601  3.50411     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     18   2.95480  3.59834  0.11601  3.50411     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     19   3.44514  0.12878  3.49408  2.83774     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     20   2.95480  3.59834  0.11601  3.50411     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     21   2.95480  3.59834  0.11601  3.50411     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     22   2.95480  3.59834  0.11601  3.50411     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     23   0.14052  3.39070  2.80870  3.29336     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     24   3.44514  0.12878  3.49408  2.83774     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     25   3.09916  2.60185  3.14691  0.17699     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     26   0.14052  3.39070  2.80870  3.29336     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     27   3.44514  0.12878  3.49408  2.83774     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     28   3.44514  0.12878  3.49408  2.83774     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     29   3.44514  0.12878  3.49408  2.83774     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     30   2.95480  3.59834  0.11601  3.50411     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     31   3.44514  0.12878  3.49408  2.83774     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     32   3.09916  2.60185  3.14691  0.17699     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     33   2.95480  3.59834  0.11601  3.50411     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     34   0.14052  3.39070  2.80870  3.29336     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     35   0.14052  3.39070  2.80870  3.29336     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     36   3.44514  0.12878  3.49408  2.83774     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     37   3.09916  2.60185  3.14691  0.17699     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     38   3.09916  2.60185  3.14691  0.17699     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     39   0.14052  3.39070  2.80870  3.29336     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     40   0.14052  3.39070  2.80870  3.29336     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     41   2.95480  3.59834  0.11601  3.50411     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     42   3.44514  0.12878  3.49408  2.83774     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     43   0.14052  3.39070  2.80870  3.29336     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     44   3.09916  2.60185  3.14691  0.17699     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     45   0.14052  3.39070  2.80870  3.29336     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01850  3.99920        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zeroc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:56:56 2012
+NSEQ  6
+EFFN  3.500977
+CKSUM 3586589863
+STATS LOCAL MSV       -7.4572  0.71933
+STATS LOCAL VITERBI   -7.4798  0.71933
+STATS LOCAL FORWARD   -4.1199  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29655  1.31476  1.52744  1.42338
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  0.00000        *
+      1   3.14491  2.63090  3.19089  0.16986      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+      2   3.49685  0.12286  3.54356  2.87517      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+      3   3.14491  2.63090  3.19089  0.16986      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+      4   3.14491  2.63090  3.19089  0.16986      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+      5   2.98580  3.64368  0.11122  3.55423      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+      6   0.13479  3.43568  2.83780  3.34265      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+      7   3.49685  0.12286  3.54356  2.87517      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+      8   3.49685  0.12286  3.54356  2.87517      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+      9   3.14491  2.63090  3.19089  0.16986      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     10   3.49685  0.12286  3.54356  2.87517     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     11   0.13479  3.43568  2.83780  3.34265     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     12   0.13479  3.43568  2.83780  3.34265     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     13   0.13479  3.43568  2.83780  3.34265     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     14   3.14491  2.63090  3.19089  0.16986     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     15   3.49685  0.12286  3.54356  2.87517     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     16   0.86165  2.54472  0.89564  2.40026     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     17   2.98580  3.64368  0.11122  3.55423     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     18   2.98580  3.64368  0.11122  3.55423     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     19   3.14491  2.63090  3.19089  0.16986     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     20   2.98580  3.64368  0.11122  3.55423     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     21   1.35943  2.69136  0.51522  2.55064     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     22   2.98580  3.64368  0.11122  3.55423     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     23   0.13479  3.43568  2.83780  3.34265     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     24   3.49685  0.12286  3.54356  2.87517     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     25   3.14491  2.63090  3.19089  0.16986     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     26   0.13479  3.43568  2.83780  3.34265     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     27   3.49685  0.12286  3.54356  2.87517     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     28   3.49685  0.12286  3.54356  2.87517     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     29   3.49685  0.12286  3.54356  2.87517     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     30   2.98580  3.64368  0.11122  3.55423     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     31   3.49685  0.12286  3.54356  2.87517     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     32   3.14491  2.63090  3.19089  0.16986     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     33   2.98580  3.64368  0.11122  3.55423     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     34   0.13479  3.43568  2.83780  3.34265     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     35   0.13479  3.43568  2.83780  3.34265     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     36   3.49685  0.12286  3.54356  2.87517     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     37   3.14491  2.63090  3.19089  0.16986     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     38   3.14491  2.63090  3.19089  0.16986     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     39   0.13479  3.43568  2.83780  3.34265     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     40   0.13479  3.43568  2.83780  3.34265     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     41   2.98580  3.64368  0.11122  3.55423     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     42   3.49685  0.12286  3.54356  2.87517     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     43   0.13479  3.43568  2.83780  3.34265     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     44   3.14491  2.63090  3.19089  0.16986     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04322  4.04322  1.46634  0.26236  1.09861  0.40547
+     45   0.13479  3.43568  2.83780  3.34265     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01802  4.02553        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zerod_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:57:04 2012
+NSEQ  6
+EFFN  3.547852
+CKSUM 1641302506
+STATS LOCAL MSV       -7.4901  0.71932
+STATS LOCAL VITERBI   -7.5740  0.71932
+STATS LOCAL FORWARD   -4.1513  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21054  1.48458  1.60511  1.29282
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  0.00000        *
+      1   3.15928  2.64001  3.20470  0.16769      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+      2   2.54860  1.35050  2.61638  0.52826      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+      3   3.15928  2.64001  3.20470  0.16769      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+      4   3.15928  2.64001  3.20470  0.16769      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+      5   2.99538  3.65775  0.10978  3.56980      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+      6   0.13306  3.44972  2.84685  3.35804      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+      7   2.44565  0.95706  2.51719  0.80157      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+      8   3.51295  0.12108  3.55896  2.88677      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+      9   3.15928  2.64001  3.20470  0.16769      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     10   3.51295  0.12108  3.55896  2.88677     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     11   0.13306  3.44972  2.84685  3.35804     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     12   0.13306  3.44972  2.84685  3.35804     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     13   0.13306  3.44972  2.84685  3.35804     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     14   3.15928  2.64001  3.20470  0.16769     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     15   3.51295  0.12108  3.55896  2.88677     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     16   0.13306  3.44972  2.84685  3.35804     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     17   2.99538  3.65775  0.10978  3.56980     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     18   2.99538  3.65775  0.10978  3.56980     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     19   3.15928  2.64001  3.20470  0.16769     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     20   0.13306  3.44972  2.84685  3.35804     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     21   2.99538  3.65775  0.10978  3.56980     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     22   2.99538  3.65775  0.10978  3.56980     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     23   0.13306  3.44972  2.84685  3.35804     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     24   3.15928  2.64001  3.20470  0.16769     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     25   3.15928  2.64001  3.20470  0.16769     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     26   0.13306  3.44972  2.84685  3.35804     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     27   3.51295  0.12108  3.55896  2.88677     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     28   3.51295  0.12108  3.55896  2.88677     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     29   3.51295  0.12108  3.55896  2.88677     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     30   2.99538  3.65775  0.10978  3.56980     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     31   3.51295  0.12108  3.55896  2.88677     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     32   3.15928  2.64001  3.20470  0.16769     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     33   2.99538  3.65775  0.10978  3.56980     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     34   0.13306  3.44972  2.84685  3.35804     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     35   0.13306  3.44972  2.84685  3.35804     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     36   3.51295  0.12108  3.55896  2.88677     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     37   3.15928  2.64001  3.20470  0.16769     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     38   3.15928  2.64001  3.20470  0.16769     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     39   0.13306  3.44972  2.84685  3.35804     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     40   0.13306  3.44972  2.84685  3.35804     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     41   2.99538  3.65775  0.10978  3.56980     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     42   3.51295  0.12108  3.55896  2.88677     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     43   0.13306  3.44972  2.84685  3.35804     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     44   3.15928  2.64001  3.20470  0.16769     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03542  4.05141  4.05141  1.46634  0.26236  1.09861  0.40547
+     45   0.13306  3.44972  2.84685  3.35804     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01786  4.03386        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zeroe_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:57:11 2012
+NSEQ  11
+EFFN  3.327393
+CKSUM 1937023544
+STATS LOCAL MSV       -7.8984  0.71933
+STATS LOCAL VITERBI   -7.7054  0.71933
+STATS LOCAL FORWARD   -4.1462  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23054  1.32040  1.60203  1.42982
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  0.00000        *
+      1   3.09013  2.59611  3.13823  0.17843      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+      2   3.43485  0.13000  3.48423  2.83026      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+      3   3.09013  2.59611  3.13823  0.17843      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+      4   3.09013  2.59611  3.13823  0.17843      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+      5   2.94858  3.58928  0.11699  3.49411      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+      6   0.14170  3.38177  2.80290  3.28358      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+      7   3.43485  0.13000  3.48423  2.83026      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+      8   3.43485  0.13000  3.48423  2.83026      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+      9   3.09013  2.59611  3.13823  0.17843      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     10   3.43485  0.13000  3.48423  2.83026     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     11   0.14170  3.38177  2.80290  3.28358     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     12   0.31415  2.89866  1.88400  2.77239     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     13   0.14170  3.38177  2.80290  3.28358     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     14   3.09013  2.59611  3.13823  0.17843     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     15   3.43485  0.13000  3.48423  2.83026     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     16   0.14170  3.38177  2.80290  3.28358     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     17   2.94858  3.58928  0.11699  3.49411     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     18   2.94858  3.58928  0.11699  3.49411     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     19   3.09013  2.59611  3.13823  0.17843     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     20   0.14170  3.38177  2.80290  3.28358     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     21   2.94858  3.58928  0.11699  3.49411     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     22   2.94858  3.58928  0.11699  3.49411     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     23   0.14170  3.38177  2.80290  3.28358     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     24   3.43485  0.13000  3.48423  2.83026     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     25   3.09013  2.59611  3.13823  0.17843     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     26   0.14170  3.38177  2.80290  3.28358     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     27   3.43485  0.13000  3.48423  2.83026     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     28   3.43485  0.13000  3.48423  2.83026     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     29   3.43485  0.13000  3.48423  2.83026     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     30   2.94858  3.58928  0.11699  3.49411     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     31   3.43485  0.13000  3.48423  2.83026     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     32   3.09013  2.59611  3.13823  0.17843     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     33   2.94858  3.58928  0.11699  3.49411     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     34   0.14170  3.38177  2.80290  3.28358     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     35   0.14170  3.38177  2.80290  3.28358     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     36   3.43485  0.13000  3.48423  2.83026     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     37   3.09013  2.59611  3.13823  0.17843     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     38   3.09013  2.59611  3.13823  0.17843     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     39   0.14170  3.38177  2.80290  3.28358     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     40   0.14170  3.38177  2.80290  3.28358     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     41   2.94858  3.58928  0.11699  3.49411     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     42   3.43485  0.13000  3.48423  2.83026     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     43   0.14170  3.38177  2.80290  3.28358     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     44   3.09013  2.59611  3.13823  0.17843     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03685  4.01230  4.01230  1.46634  0.26236  1.09861  0.40547
+     45   0.14170  3.38177  2.80290  3.28358     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01860  3.99404        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zerof_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:57:17 2012
+NSEQ  38
+EFFN  3.353760
+CKSUM 635588712
+STATS LOCAL MSV       -7.9391  0.71931
+STATS LOCAL VITERBI   -7.6166  0.71931
+STATS LOCAL FORWARD   -4.1661  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22464  1.38383  1.60472  1.36817
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  0.00000        *
+      1   3.09861  2.60150  3.14638  0.17707      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+      2   3.09861  2.60150  3.14638  0.17707      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+      3   3.09861  2.60150  3.14638  0.17707      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+      4   3.09861  2.60150  3.14638  0.17707      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+      5   2.95442  3.59779  0.11607  3.50350      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+      6   0.14059  3.39016  2.80835  3.29276      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+      7   3.44451  0.12886  3.49349  2.83729      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+      8   3.44451  0.12886  3.49349  2.83729      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+      9   3.09861  2.60150  3.14638  0.17707      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     10   3.44451  0.12886  3.49349  2.83729     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     11   0.14059  3.39016  2.80835  3.29276     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     12   0.14059  3.39016  2.80835  3.29276     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     13   0.14059  3.39016  2.80835  3.29276     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     14   3.09861  2.60150  3.14638  0.17707     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     15   3.44451  0.12886  3.49349  2.83729     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     16   0.14059  3.39016  2.80835  3.29276     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     17   2.95442  3.59779  0.11607  3.50350     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     18   2.95442  3.59779  0.11607  3.50350     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     19   2.94878  2.25268  3.00201  0.23219     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     20   0.23441  3.08456  2.19041  2.96927     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     21   2.95442  3.59779  0.11607  3.50350     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     22   2.95442  3.59779  0.11607  3.50350     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     23   0.14059  3.39016  2.80835  3.29276     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     24   3.44451  0.12886  3.49349  2.83729     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     25   3.09861  2.60150  3.14638  0.17707     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     26   0.14059  3.39016  2.80835  3.29276     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     27   3.44451  0.12886  3.49349  2.83729     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     28   3.44451  0.12886  3.49349  2.83729     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     29   3.44451  0.12886  3.49349  2.83729     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     30   2.95442  3.59779  0.11607  3.50350     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     31   3.44451  0.12886  3.49349  2.83729     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     32   3.09861  2.60150  3.14638  0.17707     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     33   2.95442  3.59779  0.11607  3.50350     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     34   0.14059  3.39016  2.80835  3.29276     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     35   0.14059  3.39016  2.80835  3.29276     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     36   3.44451  0.12886  3.49349  2.83729     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     37   3.09861  2.60150  3.14638  0.17707     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     38   3.09861  2.60150  3.14638  0.17707     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     39   0.14059  3.39016  2.80835  3.29276     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     40   0.14059  3.39016  2.80835  3.29276     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     41   2.95442  3.59779  0.11607  3.50350     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     42   3.44451  0.12886  3.49349  2.83729     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     43   0.14059  3.39016  2.80835  3.29276     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     44   3.09861  2.60150  3.14638  0.17707     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01706  4.01706  1.46634  0.26236  1.09861  0.40547
+     45   0.14059  3.39016  2.80835  3.29276     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01851  3.99889        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zerog_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:57:26 2012
+NSEQ  28
+EFFN  3.298340
+CKSUM 2124900853
+STATS LOCAL MSV       -7.9321  0.71933
+STATS LOCAL VITERBI   -7.6572  0.71933
+STATS LOCAL FORWARD   -4.1445  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22042  1.32762  1.60958  1.42788
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  0.00000        *
+      1   3.08072  2.59012  3.12917  0.17995      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      2   3.08072  2.59012  3.12917  0.17995      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      3   3.42409  0.13129  3.47393  2.82243      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      4   3.08072  2.59012  3.12917  0.17995      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      5   2.94206  3.57981  0.11803  3.48366      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      6   0.14293  3.37244  2.79684  3.27336      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      7   3.12257  0.20645  3.18132  2.29307      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      8   3.42409  0.13129  3.47393  2.82243      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      9   3.08072  2.59012  3.12917  0.17995      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     10   3.42409  0.13129  3.47393  2.82243     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     11   0.14293  3.37244  2.79684  3.27336     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     12   0.14293  3.37244  2.79684  3.27336     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     13   0.14293  3.37244  2.79684  3.27336     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     14   3.08072  2.59012  3.12917  0.17995     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     15   3.42409  0.13129  3.47393  2.82243     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     16   0.14293  3.37244  2.79684  3.27336     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     17   2.94206  3.57981  0.11803  3.48366     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     18   2.94206  3.57981  0.11803  3.48366     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     19   3.08072  2.59012  3.12917  0.17995     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     20   0.14293  3.37244  2.79684  3.27336     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     21   2.94206  3.57981  0.11803  3.48366     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     22   2.94206  3.57981  0.11803  3.48366     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     23   0.14293  3.37244  2.79684  3.27336     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     24   3.42409  0.13129  3.47393  2.82243     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     25   3.08072  2.59012  3.12917  0.17995     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     26   0.14293  3.37244  2.79684  3.27336     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     27   3.42409  0.13129  3.47393  2.82243     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     28   3.42409  0.13129  3.47393  2.82243     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     29   3.42409  0.13129  3.47393  2.82243     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     30   2.94206  3.57981  0.11803  3.48366     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     31   3.42409  0.13129  3.47393  2.82243     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     32   3.08072  2.59012  3.12917  0.17995     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     33   2.94206  3.57981  0.11803  3.48366     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     34   0.14293  3.37244  2.79684  3.27336     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     35   0.14293  3.37244  2.79684  3.27336     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     36   3.42409  0.13129  3.47393  2.82243     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     37   3.08072  2.59012  3.12917  0.17995     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     38   3.08072  2.59012  3.12917  0.17995     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     39   0.14293  3.37244  2.79684  3.27336     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     40   0.14293  3.37244  2.79684  3.27336     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     41   2.94206  3.57981  0.11803  3.48366     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     42   3.42409  0.13129  3.47393  2.82243     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     43   0.14293  3.37244  2.79684  3.27336     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     44   3.08072  2.59012  3.12917  0.17995     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     45   0.14293  3.37244  2.79684  3.27336     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01870  3.98868        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zeroh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:57:33 2012
+NSEQ  5
+EFFN  3.393555
+CKSUM 3877494468
+STATS LOCAL MSV       -7.4633  0.71933
+STATS LOCAL VITERBI   -7.6926  0.71933
+STATS LOCAL FORWARD   -4.1375  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21641  1.35390  1.60772  1.40596
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  0.00000        *
+      1   3.11130  2.60957  3.15859  0.17506      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      2   3.11130  2.60957  3.15859  0.17506      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      3   3.11130  2.60957  3.15859  0.17506      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      4   3.45893  0.12717  3.50729  2.84776      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      5   2.96311  3.61046  0.11471  3.51750      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      6   0.13897  3.40269  2.81647  3.30648      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      7   2.44572  0.73402  2.51808  1.04200      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      8   3.45893  0.12717  3.50729  2.84776      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      9   3.11130  2.60957  3.15859  0.17506      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     10   3.45893  0.12717  3.50729  2.84776     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     11   0.13897  3.40269  2.81647  3.30648     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     12   0.13897  3.40269  2.81647  3.30648     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     13   0.13897  3.40269  2.81647  3.30648     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     14   3.11130  2.60957  3.15859  0.17506     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     15   3.45893  0.12717  3.50729  2.84776     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     16   0.13897  3.40269  2.81647  3.30648     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     17   2.96311  3.61046  0.11471  3.51750     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     18   2.96311  3.61046  0.11471  3.51750     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     19   3.11130  2.60957  3.15859  0.17506     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     20   0.13897  3.40269  2.81647  3.30648     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     21   2.96311  3.61046  0.11471  3.51750     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     22   2.96311  3.61046  0.11471  3.51750     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     23   0.13897  3.40269  2.81647  3.30648     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     24   3.45893  0.12717  3.50729  2.84776     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     25   3.11130  2.60957  3.15859  0.17506     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     26   0.13897  3.40269  2.81647  3.30648     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     27   3.45893  0.12717  3.50729  2.84776     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     28   3.45893  0.12717  3.50729  2.84776     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     29   3.45893  0.12717  3.50729  2.84776     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     30   2.96311  3.61046  0.11471  3.51750     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     31   3.45893  0.12717  3.50729  2.84776     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     32   3.11130  2.60957  3.15859  0.17506     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     33   2.96311  3.61046  0.11471  3.51750     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     34   0.13897  3.40269  2.81647  3.30648     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     35   0.13897  3.40269  2.81647  3.30648     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     36   3.45893  0.12717  3.50729  2.84776     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     37   3.11130  2.60957  3.15859  0.17506     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     38   3.11130  2.60957  3.15859  0.17506     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     39   0.13897  3.40269  2.81647  3.30648     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     40   0.13897  3.40269  2.81647  3.30648     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     41   2.96311  3.61046  0.11471  3.51750     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     42   3.45893  0.12717  3.50729  2.84776     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     43   0.13897  3.40269  2.81647  3.30648     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     44   3.11130  2.60957  3.15859  0.17506     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     45   0.13897  3.40269  2.81647  3.30648     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01837  4.00616        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zeroi_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:57:40 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1358711406
+STATS LOCAL MSV       -7.2748  0.72894
+STATS LOCAL VITERBI   -8.1824  0.72894
+STATS LOCAL FORWARD   -3.3082  0.72894
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26783  1.39124  1.53757  1.36693
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.92825  2.28391  0.95698  2.13014     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zeroj_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:57:49 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3176606988
+STATS LOCAL MSV       -7.2841  0.72813
+STATS LOCAL VITERBI   -8.2393  0.72813
+STATS LOCAL FORWARD   -3.5132  0.72813
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29204  1.34054  1.49917  1.42600
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zerok_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:58:04 2012
+NSEQ  9
+EFFN  3.467285
+CKSUM 4841333
+STATS LOCAL MSV       -7.5087  0.71933
+STATS LOCAL VITERBI   -7.5908  0.71933
+STATS LOCAL FORWARD   -4.1771  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.20120  1.40481  1.55244  1.41873
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  0.00000        *
+      1   1.36818  2.68930  0.51199  2.54850      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+      2   3.13447  2.62427  3.18086  0.17146      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+      3   3.13447  2.62427  3.18086  0.17146      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+      4   3.13447  2.62427  3.18086  0.17146      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+      5   2.97880  3.63341  0.11228  3.54287      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+      6   0.13607  3.42546  2.83120  3.33144      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+      7   3.48511  0.12417  3.53234  2.86670      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+      8   3.48511  0.12417  3.53234  2.86670      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+      9   3.13447  2.62427  3.18086  0.17146      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     10   3.48511  0.12417  3.53234  2.86670     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     11   0.13607  3.42546  2.83120  3.33144     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     12   0.13607  3.42546  2.83120  3.33144     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     13   0.13607  3.42546  2.83120  3.33144     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     14   3.13447  2.62427  3.18086  0.17146     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     15   3.48511  0.12417  3.53234  2.86670     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     16   0.13607  3.42546  2.83120  3.33144     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     17   2.97880  3.63341  0.11228  3.54287     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     18   2.97880  3.63341  0.11228  3.54287     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     19   3.13447  2.62427  3.18086  0.17146     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     20   0.13607  3.42546  2.83120  3.33144     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     21   2.97880  3.63341  0.11228  3.54287     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     22   2.97880  3.63341  0.11228  3.54287     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     23   0.13607  3.42546  2.83120  3.33144     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     24   2.73151  0.39094  2.79970  1.62136     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     25   3.13447  2.62427  3.18086  0.17146     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     26   0.13607  3.42546  2.83120  3.33144     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     27   3.48511  0.12417  3.53234  2.86670     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     28   3.48511  0.12417  3.53234  2.86670     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     29   3.48511  0.12417  3.53234  2.86670     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     30   2.97880  3.63341  0.11228  3.54287     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     31   3.48511  0.12417  3.53234  2.86670     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     32   3.13447  2.62427  3.18086  0.17146     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     33   2.97880  3.63341  0.11228  3.54287     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     34   0.13607  3.42546  2.83120  3.33144     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     35   0.13607  3.42546  2.83120  3.33144     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     36   3.48511  0.12417  3.53234  2.86670     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     37   3.13447  2.62427  3.18086  0.17146     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     38   3.13447  2.62427  3.18086  0.17146     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     39   0.13607  3.42546  2.83120  3.33144     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     40   0.13607  3.42546  2.83120  3.33144     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     41   2.97880  3.63341  0.11228  3.54287     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     42   3.48511  0.12417  3.53234  2.86670     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     43   0.13607  3.42546  2.83120  3.33144     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     44   3.13447  2.62427  3.18086  0.17146     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03593  4.03730  4.03730  1.46634  0.26236  1.09861  0.40547
+     45   0.13607  3.42546  2.83120  3.33144     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01813  4.01949        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zerol_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:58:14 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1380909000
+STATS LOCAL MSV       -7.8581  0.72040
+STATS LOCAL VITERBI   -7.7283  0.72040
+STATS LOCAL FORWARD   -4.0355  0.72040
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22456  1.32500  1.60288  1.43131
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zerom_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:58:27 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2586996602
+STATS LOCAL MSV       -7.2336  0.72874
+STATS LOCAL VITERBI   -8.1284  0.72874
+STATS LOCAL FORWARD   -3.3153  0.72874
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23521  1.43456  1.49194  1.40214
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.15554  1.00938  2.23102  0.88601     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zeron_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:58:34 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1275853522
+STATS LOCAL MSV       -7.3133  0.72871
+STATS LOCAL VITERBI   -8.2509  0.72871
+STATS LOCAL FORWARD   -3.4740  0.72871
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.18757  1.37786  1.56010  1.45755
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.15554  1.00938  2.23102  0.88601     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zeroo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:58:41 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3626745368
+STATS LOCAL MSV       -7.9548  0.72125
+STATS LOCAL VITERBI   -7.7562  0.72125
+STATS LOCAL FORWARD   -3.8171  0.72125
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.05917  1.45675  1.56990  1.55023
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.86982  3.47591  0.13017  3.36931      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.11048  0.71234  1.38751  1.97595     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.43440  0.61908  2.50724  1.22957     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   0.15719  3.27118  2.73043  3.16274     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zerop_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:58:49 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1612814297
+STATS LOCAL MSV       -7.8690  0.72026
+STATS LOCAL VITERBI   -7.8240  0.72026
+STATS LOCAL FORWARD   -4.1287  0.72026
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28267  1.26653  1.52492  1.49943
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Fungi_Ge_4_LSU_start_zeroq_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 21:58:58 2012
+NSEQ  4
+EFFN  3.394531
+CKSUM 115258169
+STATS LOCAL MSV       -7.4886  0.71933
+STATS LOCAL VITERBI   -7.6337  0.71933
+STATS LOCAL FORWARD   -4.1831  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21618  1.36167  1.60745  1.39833
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  0.00000        *
+      1   3.11161  2.60976  3.15888  0.17501      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+      2   3.11161  2.60976  3.15888  0.17501      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+      3   2.41818  0.95521  2.49012  0.81354      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+      4   3.11161  2.60976  3.15888  0.17501      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+      5   2.96332  3.61077  0.11467  3.51784      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+      6   0.13893  3.40299  2.81667  3.30682      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+      7   3.45928  0.12713  3.50762  2.84801      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+      8   3.45928  0.12713  3.50762  2.84801      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+      9   3.11161  2.60976  3.15888  0.17501      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     10   3.45928  0.12713  3.50762  2.84801     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     11   0.13893  3.40299  2.81667  3.30682     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     12   0.13893  3.40299  2.81667  3.30682     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     13   0.13893  3.40299  2.81667  3.30682     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     14   3.11161  2.60976  3.15888  0.17501     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     15   3.45928  0.12713  3.50762  2.84801     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     16   0.13893  3.40299  2.81667  3.30682     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     17   2.96332  3.61077  0.11467  3.51784     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     18   2.96332  3.61077  0.11467  3.51784     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     19   3.11161  2.60976  3.15888  0.17501     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     20   0.13893  3.40299  2.81667  3.30682     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     21   2.96332  3.61077  0.11467  3.51784     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     22   2.96332  3.61077  0.11467  3.51784     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     23   0.13893  3.40299  2.81667  3.30682     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     24   3.45928  0.12713  3.50762  2.84801     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     25   3.11161  2.60976  3.15888  0.17501     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     26   0.13893  3.40299  2.81667  3.30682     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     27   3.45928  0.12713  3.50762  2.84801     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     28   3.45928  0.12713  3.50762  2.84801     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     29   3.45928  0.12713  3.50762  2.84801     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     30   2.96332  3.61077  0.11467  3.51784     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     31   3.45928  0.12713  3.50762  2.84801     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     32   3.11161  2.60976  3.15888  0.17501     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     33   2.96332  3.61077  0.11467  3.51784     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     34   0.13893  3.40299  2.81667  3.30682     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     35   0.13893  3.40299  2.81667  3.30682     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     36   3.45928  0.12713  3.50762  2.84801     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     37   3.11161  2.60976  3.15888  0.17501     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     38   3.11161  2.60976  3.15888  0.17501     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     39   0.13893  3.40299  2.81667  3.30682     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     40   0.13893  3.40299  2.81667  3.30682     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     41   2.96332  3.61077  0.11467  3.51784     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     42   3.45928  0.12713  3.50762  2.84801     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     43   0.13893  3.40299  2.81667  3.30682     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     44   3.11161  2.60976  3.15888  0.17501     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02437  4.02437  1.46634  0.26236  1.09861  0.40547
+     45   0.13893  3.40299  2.81667  3.30682     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01837  4.00634        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ca_1_SSU_end_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 13:56:29 2012
+NSEQ  12
+EFFN  3.178711
+CKSUM 1984040130
+STATS LOCAL MSV       -8.0977  0.71931
+STATS LOCAL VITERBI   -7.7092  0.71931
+STATS LOCAL FORWARD   -4.0736  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33888  1.40002  1.24981  1.58616
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  0.00000        *
+      1   2.91430  3.53962  0.12257  3.43936      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      2   3.04119  2.56493  3.09115  0.18651      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      3   3.37862  0.13690  3.43035  2.78916      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      4   2.91430  3.53962  0.12257  3.43936      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      5   3.04119  2.56493  3.09115  0.18651      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      6   0.14829  3.33304  2.77114  3.23028      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      7   0.14829  3.33304  2.77114  3.23028      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      8   3.37862  0.13690  3.43035  2.78916      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      9   0.14829  3.33304  2.77114  3.23028      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     10   0.14829  3.33304  2.77114  3.23028     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     11   2.91430  3.53962  0.12257  3.43936     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     12   2.91430  3.53962  0.12257  3.43936     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     13   3.04119  2.56493  3.09115  0.18651     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     14   3.04119  2.56493  3.09115  0.18651     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     15   3.04119  2.56493  3.09115  0.18651     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     16   3.37862  0.13690  3.43035  2.78916     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     17   3.37862  0.13690  3.43035  2.78916     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     18   2.91430  3.53962  0.12257  3.43936     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     19   3.04119  2.56493  3.09115  0.18651     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     20   0.14829  3.33304  2.77114  3.23028     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     21   2.91430  3.53962  0.12257  3.43936     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     22   2.91430  3.53962  0.12257  3.43936     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     23   3.04119  2.56493  3.09115  0.18651     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     24   2.91430  3.53962  0.12257  3.43936     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     25   0.14829  3.33304  2.77114  3.23028     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     26   0.14829  3.33304  2.77114  3.23028     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     27   3.37862  0.13690  3.43035  2.78916     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     28   3.37862  0.13690  3.43035  2.78916     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     29   3.04119  2.56493  3.09115  0.18651     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     30   2.91430  3.53962  0.12257  3.43936     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     31   3.37862  0.13690  3.43035  2.78916     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     32   2.91430  3.53962  0.12257  3.43936     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     33   2.91430  3.53962  0.12257  3.43936     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     34   0.14829  3.33304  2.77114  3.23028     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     35   0.14829  3.33304  2.77114  3.23028     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     36   2.91430  3.53962  0.12257  3.43936     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     37   2.91430  3.53962  0.12257  3.43936     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     38   0.14829  3.33304  2.77114  3.23028     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     39   3.04119  2.56493  3.09115  0.18651     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     40   3.37862  0.13690  3.43035  2.78916     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     41   0.14829  3.33304  2.77114  3.23028     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     42   0.14829  3.33304  2.77114  3.23028     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     43   3.37862  0.13690  3.43035  2.78916     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     44   3.37862  0.13690  3.43035  2.78916     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     45   3.37862  0.13690  3.43035  2.78916     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01913  3.96627        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Cr_1_SSU_end_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 13:46:04 2012
+NSEQ  11
+EFFN  3.273682
+CKSUM 279787087
+STATS LOCAL MSV       -7.9936  0.71933
+STATS LOCAL VITERBI   -7.6847  0.71933
+STATS LOCAL FORWARD   -4.0684  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33495  1.53740  1.25494  1.44056
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  0.00000        *
+      1   2.93646  3.57168  0.11893  3.47469      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+      2   3.07267  2.58500  3.12143  0.18127      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+      3   3.41487  0.13240  3.46510  2.81570      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+      4   2.93646  3.57168  0.11893  3.47469      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+      5   3.07267  2.58500  3.12143  0.18127      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+      6   0.14400  3.36445  2.79164  3.26462      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+      7   0.14400  3.36445  2.79164  3.26462      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+      8   3.41487  0.13240  3.46510  2.81570      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+      9   0.14400  3.36445  2.79164  3.26462      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     10   0.14400  3.36445  2.79164  3.26462     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     11   2.93646  3.57168  0.11893  3.47469     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     12   2.93646  3.57168  0.11893  3.47469     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     13   3.07267  2.58500  3.12143  0.18127     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     14   3.07267  2.58500  3.12143  0.18127     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     15   3.07267  2.58500  3.12143  0.18127     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     16   3.41487  0.13240  3.46510  2.81570     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     17   3.41487  0.13240  3.46510  2.81570     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     18   2.93646  3.57168  0.11893  3.47469     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     19   3.07267  2.58500  3.12143  0.18127     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     20   0.14400  3.36445  2.79164  3.26462     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     21   2.93646  3.57168  0.11893  3.47469     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     22   2.93646  3.57168  0.11893  3.47469     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     23   3.07267  2.58500  3.12143  0.18127     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     24   2.93646  3.57168  0.11893  3.47469     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     25   0.14400  3.36445  2.79164  3.26462     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     26   0.14400  3.36445  2.79164  3.26462     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     27   3.41487  0.13240  3.46510  2.81570     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     28   3.41487  0.13240  3.46510  2.81570     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     29   3.07267  2.58500  3.12143  0.18127     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     30   2.61388  2.50308  0.24033  2.83787     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     31   3.41487  0.13240  3.46510  2.81570     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     32   2.93646  3.57168  0.11893  3.47469     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     33   2.93646  3.57168  0.11893  3.47469     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     34   0.14400  3.36445  2.79164  3.26462     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     35   0.14400  3.36445  2.79164  3.26462     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     36   2.93646  3.57168  0.11893  3.47469     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     37   2.93646  3.57168  0.11893  3.47469     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     38   0.14400  3.36445  2.79164  3.26462     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     39   3.07267  2.58500  3.12143  0.18127     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     40   3.41487  0.13240  3.46510  2.81570     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     41   0.14400  3.36445  2.79164  3.26462     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     42   3.07267  2.58500  3.12143  0.18127     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     43   3.07267  2.58500  3.12143  0.18127     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     44   3.41487  0.13240  3.46510  2.81570     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00254  4.00254  1.46634  0.26236  1.09861  0.40547
+     45   0.14400  3.36445  2.79164  3.26462     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01878  3.98410        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Tu_1_SSU_end_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 15:03:03 2012
+NSEQ  24
+EFFN  3.196289
+CKSUM 260009009
+STATS LOCAL MSV       -7.9745  0.71933
+STATS LOCAL VITERBI   -7.7116  0.71933
+STATS LOCAL FORWARD   -4.1567  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27161  1.63095  1.18853  1.51774
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  0.00000        *
+      1   0.14748  3.33893  2.77499  3.23671      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+      2   2.91847  3.54565  0.12187  3.44599      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+      3   3.04708  2.56869  3.09681  0.18552      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+      4   3.38542  0.13604  3.43688  2.79415      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+      5   2.91847  3.54565  0.12187  3.44599      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+      6   3.04708  2.56869  3.09681  0.18552      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+      7   0.14748  3.33893  2.77499  3.23671      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+      8   0.14748  3.33893  2.77499  3.23671      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+      9   3.38542  0.13604  3.43688  2.79415      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     10   0.14748  3.33893  2.77499  3.23671     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     11   0.14748  3.33893  2.77499  3.23671     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     12   2.91847  3.54565  0.12187  3.44599     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     13   2.91847  3.54565  0.12187  3.44599     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     14   3.04708  2.56869  3.09681  0.18552     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     15   3.04708  2.56869  3.09681  0.18552     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     16   3.04708  2.56869  3.09681  0.18552     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     17   3.38542  0.13604  3.43688  2.79415     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     18   3.38542  0.13604  3.43688  2.79415     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     19   2.91847  3.54565  0.12187  3.44599     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     20   3.04708  2.56869  3.09681  0.18552     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     21   0.14748  3.33893  2.77499  3.23671     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     22   2.91847  3.54565  0.12187  3.44599     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     23   2.91847  3.54565  0.12187  3.44599     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     24   3.04708  2.56869  3.09681  0.18552     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     25   2.91847  3.54565  0.12187  3.44599     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     26   0.14748  3.33893  2.77499  3.23671     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     27   0.14748  3.33893  2.77499  3.23671     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     28   3.38542  0.13604  3.43688  2.79415     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     29   3.38542  0.13604  3.43688  2.79415     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     30   3.04708  2.56869  3.09681  0.18552     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     31   2.91847  3.54565  0.12187  3.44599     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     32   3.38542  0.13604  3.43688  2.79415     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     33   2.91847  3.54565  0.12187  3.44599     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     34   2.91847  3.54565  0.12187  3.44599     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     35   0.14748  3.33893  2.77499  3.23671     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     36   0.14748  3.33893  2.77499  3.23671     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     37   2.91847  3.54565  0.12187  3.44599     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     38   2.91847  3.54565  0.12187  3.44599     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     39   0.14748  3.33893  2.77499  3.23671     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     40   3.04708  2.56869  3.09681  0.18552     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     41   3.38542  0.13604  3.43688  2.79415     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     42   0.14748  3.33893  2.77499  3.23671     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     43   3.04708  2.56869  3.09681  0.18552     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     44   0.14748  3.33893  2.77499  3.23671     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     45   2.91847  3.54565  0.12187  3.44599     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01906  3.96959        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Tu_1_SSU_end_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 15:02:20 2012
+NSEQ  31
+EFFN  3.227905
+CKSUM 4193963486
+STATS LOCAL MSV       -8.0048  0.71932
+STATS LOCAL VITERBI   -7.6840  0.71932
+STATS LOCAL FORWARD   -4.1097  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27188  1.62648  1.24658  1.44567
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  0.00000        *
+      1   0.14603  3.34943  2.78185  3.24820      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+      2   2.92590  3.55638  0.12065  3.45782      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+      3   3.05760  2.57540  3.10693  0.18376      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+      4   3.39755  0.13453  3.44850  2.80304      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+      5   2.92590  3.55638  0.12065  3.45782      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+      6   3.05760  2.57540  3.10693  0.18376      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+      7   0.14603  3.34943  2.78185  3.24820      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+      8   0.14603  3.34943  2.78185  3.24820      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+      9   3.39755  0.13453  3.44850  2.80304      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     10   0.14603  3.34943  2.78185  3.24820     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     11   0.14603  3.34943  2.78185  3.24820     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     12   2.92590  3.55638  0.12065  3.45782     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     13   2.92590  3.55638  0.12065  3.45782     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     14   3.05760  2.57540  3.10693  0.18376     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     15   3.05760  2.57540  3.10693  0.18376     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     16   3.05760  2.57540  3.10693  0.18376     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     17   3.39755  0.13453  3.44850  2.80304     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     18   3.39755  0.13453  3.44850  2.80304     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     19   2.92590  3.55638  0.12065  3.45782     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     20   3.05760  2.57540  3.10693  0.18376     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     21   0.14603  3.34943  2.78185  3.24820     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     22   2.92590  3.55638  0.12065  3.45782     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     23   2.92590  3.55638  0.12065  3.45782     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     24   3.05760  2.57540  3.10693  0.18376     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     25   2.92590  3.55638  0.12065  3.45782     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     26   0.14603  3.34943  2.78185  3.24820     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     27   0.14603  3.34943  2.78185  3.24820     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     28   3.39755  0.13453  3.44850  2.80304     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     29   3.39755  0.13453  3.44850  2.80304     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     30   3.05760  2.57540  3.10693  0.18376     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     31   2.92590  3.55638  0.12065  3.45782     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     32   3.39755  0.13453  3.44850  2.80304     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     33   2.92590  3.55638  0.12065  3.45782     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     34   2.92590  3.55638  0.12065  3.45782     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     35   0.14603  3.34943  2.78185  3.24820     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     36   0.14603  3.34943  2.78185  3.24820     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     37   2.92590  3.55638  0.12065  3.45782     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     38   2.92590  3.55638  0.12065  3.45782     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     39   0.14603  3.34943  2.78185  3.24820     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     40   3.05760  2.57540  3.10693  0.18376     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     41   3.39755  0.13453  3.44850  2.80304     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     42   0.14603  3.34943  2.78185  3.24820     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     43   3.05760  2.57540  3.10693  0.18376     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     44   3.05760  2.57540  3.10693  0.18376     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99414  3.99414  1.46634  0.26236  1.09861  0.40547
+     45   0.14603  3.34943  2.78185  3.24820     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01895  3.97554        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Tu_1_SSU_end_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 15:02:11 2012
+NSEQ  5
+EFFN  3.188477
+CKSUM 1005625387
+STATS LOCAL MSV       -8.0565  0.71934
+STATS LOCAL VITERBI   -7.6761  0.71934
+STATS LOCAL FORWARD   -4.1063  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33412  1.54688  1.19062  1.51566
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  0.00000        *
+      1   0.14784  3.33632  2.77329  3.23386      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+      2   2.91662  3.54297  0.12218  3.44305      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+      3   3.04447  2.56702  3.09430  0.18596      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+      4   3.38240  0.13642  3.43398  2.79193      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+      5   2.91662  3.54297  0.12218  3.44305      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+      6   3.04447  2.56702  3.09430  0.18596      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+      7   0.14784  3.33632  2.77329  3.23386      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+      8   0.14784  3.33632  2.77329  3.23386      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+      9   3.38240  0.13642  3.43398  2.79193      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     10   0.14784  3.33632  2.77329  3.23386     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     11   0.14784  3.33632  2.77329  3.23386     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     12   2.91662  3.54297  0.12218  3.44305     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     13   2.91662  3.54297  0.12218  3.44305     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     14   3.04447  2.56702  3.09430  0.18596     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     15   3.04447  2.56702  3.09430  0.18596     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     16   3.04447  2.56702  3.09430  0.18596     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     17   3.38240  0.13642  3.43398  2.79193     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     18   3.38240  0.13642  3.43398  2.79193     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     19   2.91662  3.54297  0.12218  3.44305     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     20   3.04447  2.56702  3.09430  0.18596     20 - -
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+     22   2.91662  3.54297  0.12218  3.44305     22 - -
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+     23   2.91662  3.54297  0.12218  3.44305     23 - -
+          1.38629  1.38629  1.38629  1.38629
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+     24   3.04447  2.56702  3.09430  0.18596     24 - -
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+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     26   0.14784  3.33632  2.77329  3.23386     26 - -
+          1.38629  1.38629  1.38629  1.38629
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+     27   0.14784  3.33632  2.77329  3.23386     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     28   3.38240  0.13642  3.43398  2.79193     28 - -
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+     29   3.38240  0.13642  3.43398  2.79193     29 - -
+          1.38629  1.38629  1.38629  1.38629
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+     30   3.04447  2.56702  3.09430  0.18596     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     31   2.91662  3.54297  0.12218  3.44305     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     32   3.38240  0.13642  3.43398  2.79193     32 - -
+          1.38629  1.38629  1.38629  1.38629
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+     33   2.91662  3.54297  0.12218  3.44305     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     34   2.91662  3.54297  0.12218  3.44305     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     35   0.14784  3.33632  2.77329  3.23386     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     36   0.14784  3.33632  2.77329  3.23386     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     37   2.91662  3.54297  0.12218  3.44305     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     38   2.91662  3.54297  0.12218  3.44305     38 - -
+          1.38629  1.38629  1.38629  1.38629
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+     39   0.14784  3.33632  2.77329  3.23386     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     40   3.04447  2.56702  3.09430  0.18596     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     41   3.38240  0.13642  3.43398  2.79193     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     42   0.14784  3.33632  2.77329  3.23386     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     43   2.91662  3.54297  0.12218  3.44305     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     44   3.04447  2.56702  3.09430  0.18596     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98685  3.98685  1.46634  0.26236  1.09861  0.40547
+     45   3.38240  0.13642  3.43398  2.79193     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01909  3.96812        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Tu_1_SSU_end_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 15:03:13 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1858634800
+STATS LOCAL MSV       -8.0140  0.72009
+STATS LOCAL VITERBI   -7.7088  0.72009
+STATS LOCAL FORWARD   -4.0438  0.72009
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33458  1.54526  1.19211  1.51460
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
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+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
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+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.86982  3.47591  0.13017  3.36931     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Tu_1_SSU_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 15:01:47 2012
+NSEQ  15
+EFFN  3.197021
+CKSUM 2497484926
+STATS LOCAL MSV       -7.9745  0.71933
+STATS LOCAL VITERBI   -7.7116  0.71933
+STATS LOCAL FORWARD   -4.1570  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27161  1.63096  1.18852  1.51774
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  0.00000        *
+      1   0.14744  3.33918  2.77515  3.23698      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+      2   2.91865  3.54590  0.12184  3.44627      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+      3   3.04732  2.56884  3.09705  0.18548      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+      4   3.38570  0.13601  3.43715  2.79436      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+      5   2.91865  3.54590  0.12184  3.44627      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+      6   3.04732  2.56884  3.09705  0.18548      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+      7   0.14744  3.33918  2.77515  3.23698      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+      8   0.14744  3.33918  2.77515  3.23698      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+      9   3.38570  0.13601  3.43715  2.79436      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     10   0.14744  3.33918  2.77515  3.23698     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     11   0.14744  3.33918  2.77515  3.23698     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     12   2.91865  3.54590  0.12184  3.44627     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     13   2.91865  3.54590  0.12184  3.44627     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     14   3.04732  2.56884  3.09705  0.18548     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     15   3.04732  2.56884  3.09705  0.18548     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     16   3.04732  2.56884  3.09705  0.18548     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     17   3.38570  0.13601  3.43715  2.79436     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     18   3.38570  0.13601  3.43715  2.79436     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     19   2.91865  3.54590  0.12184  3.44627     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     20   3.04732  2.56884  3.09705  0.18548     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     21   0.14744  3.33918  2.77515  3.23698     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     22   2.91865  3.54590  0.12184  3.44627     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     23   2.91865  3.54590  0.12184  3.44627     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     24   3.04732  2.56884  3.09705  0.18548     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     25   2.91865  3.54590  0.12184  3.44627     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     26   0.14744  3.33918  2.77515  3.23698     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     27   0.14744  3.33918  2.77515  3.23698     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     28   3.38570  0.13601  3.43715  2.79436     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     29   3.38570  0.13601  3.43715  2.79436     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     30   3.04732  2.56884  3.09705  0.18548     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     31   2.91865  3.54590  0.12184  3.44627     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     32   3.38570  0.13601  3.43715  2.79436     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     33   2.91865  3.54590  0.12184  3.44627     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     34   2.91865  3.54590  0.12184  3.44627     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     35   0.14744  3.33918  2.77515  3.23698     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     36   0.14744  3.33918  2.77515  3.23698     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     37   2.91865  3.54590  0.12184  3.44627     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     38   2.91865  3.54590  0.12184  3.44627     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     39   0.14744  3.33918  2.77515  3.23698     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     40   3.04732  2.56884  3.09705  0.18548     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     41   3.38570  0.13601  3.43715  2.79436     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     42   0.14744  3.33918  2.77515  3.23698     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     43   3.04732  2.56884  3.09705  0.18548     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     44   0.14744  3.33918  2.77515  3.23698     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98843  3.98843  1.46634  0.26236  1.09861  0.40547
+     45   2.91865  3.54590  0.12184  3.44627     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01906  3.96973        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Tu_1_SSU_end_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 15:02:53 2012
+NSEQ  37
+EFFN  3.193237
+CKSUM 2387630304
+STATS LOCAL MSV       -8.0565  0.71932
+STATS LOCAL VITERBI   -7.6734  0.71932
+STATS LOCAL FORWARD   -4.1077  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33411  1.54692  1.19058  1.51568
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  0.00000        *
+      1   0.14762  3.33791  2.77433  3.23560      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+      2   2.91775  3.54460  0.12199  3.44484      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+      3   3.04606  2.56804  3.09583  0.18569      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+      4   3.38424  0.13619  3.43575  2.79329      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+      5   2.91775  3.54460  0.12199  3.44484      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+      6   3.04606  2.56804  3.09583  0.18569      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+      7   0.14762  3.33791  2.77433  3.23560      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+      8   0.14762  3.33791  2.77433  3.23560      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+      9   3.38424  0.13619  3.43575  2.79329      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     10   0.14762  3.33791  2.77433  3.23560     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     11   0.14762  3.33791  2.77433  3.23560     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     12   2.91775  3.54460  0.12199  3.44484     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     13   2.91775  3.54460  0.12199  3.44484     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     14   3.04606  2.56804  3.09583  0.18569     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     15   3.04606  2.56804  3.09583  0.18569     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     16   3.04606  2.56804  3.09583  0.18569     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     17   3.38424  0.13619  3.43575  2.79329     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     18   3.38424  0.13619  3.43575  2.79329     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     19   2.91775  3.54460  0.12199  3.44484     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     20   3.04606  2.56804  3.09583  0.18569     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     21   0.14762  3.33791  2.77433  3.23560     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     22   2.91775  3.54460  0.12199  3.44484     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     23   2.91775  3.54460  0.12199  3.44484     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     24   3.04606  2.56804  3.09583  0.18569     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     25   2.91775  3.54460  0.12199  3.44484     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     26   0.14762  3.33791  2.77433  3.23560     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     27   0.14762  3.33791  2.77433  3.23560     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     28   3.38424  0.13619  3.43575  2.79329     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     29   3.38424  0.13619  3.43575  2.79329     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     30   3.04606  2.56804  3.09583  0.18569     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     31   2.91775  3.54460  0.12199  3.44484     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     32   3.38424  0.13619  3.43575  2.79329     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     33   2.91775  3.54460  0.12199  3.44484     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     34   2.91775  3.54460  0.12199  3.44484     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     35   0.14762  3.33791  2.77433  3.23560     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     36   0.14762  3.33791  2.77433  3.23560     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     37   2.91775  3.54460  0.12199  3.44484     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     38   2.91775  3.54460  0.12199  3.44484     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     39   0.14762  3.33791  2.77433  3.23560     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     40   3.04606  2.56804  3.09583  0.18569     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     41   3.38424  0.13619  3.43575  2.79329     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     42   0.14762  3.33791  2.77433  3.23560     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     43   2.91775  3.54460  0.12199  3.44484     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     44   3.04606  2.56804  3.09583  0.18569     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03779  3.98773  3.98773  1.46634  0.26236  1.09861  0.40547
+     45   3.38424  0.13619  3.43575  2.79329     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01907  3.96902        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Tu_1_SSU_end_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 15:02:29 2012
+NSEQ  6
+EFFN  3.196289
+CKSUM 3863508261
+STATS LOCAL MSV       -7.9745  0.71933
+STATS LOCAL VITERBI   -7.7116  0.71933
+STATS LOCAL FORWARD   -4.1567  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27161  1.63095  1.18853  1.51774
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  0.00000        *
+      1   0.14748  3.33893  2.77499  3.23671      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+      2   2.91847  3.54565  0.12187  3.44599      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+      3   3.04708  2.56869  3.09681  0.18552      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+      4   3.38542  0.13604  3.43688  2.79415      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+      5   2.91847  3.54565  0.12187  3.44599      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+      6   3.04708  2.56869  3.09681  0.18552      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+      7   0.14748  3.33893  2.77499  3.23671      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+      8   0.14748  3.33893  2.77499  3.23671      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+      9   3.38542  0.13604  3.43688  2.79415      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     10   0.14748  3.33893  2.77499  3.23671     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     11   0.14748  3.33893  2.77499  3.23671     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     12   2.91847  3.54565  0.12187  3.44599     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     13   2.91847  3.54565  0.12187  3.44599     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     14   3.04708  2.56869  3.09681  0.18552     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     15   3.04708  2.56869  3.09681  0.18552     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     16   3.04708  2.56869  3.09681  0.18552     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     17   3.38542  0.13604  3.43688  2.79415     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     18   3.38542  0.13604  3.43688  2.79415     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     19   2.91847  3.54565  0.12187  3.44599     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     20   3.04708  2.56869  3.09681  0.18552     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     21   0.14748  3.33893  2.77499  3.23671     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     22   2.91847  3.54565  0.12187  3.44599     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     23   2.91847  3.54565  0.12187  3.44599     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     24   3.04708  2.56869  3.09681  0.18552     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     25   2.91847  3.54565  0.12187  3.44599     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     26   0.14748  3.33893  2.77499  3.23671     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     27   0.14748  3.33893  2.77499  3.23671     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     28   3.38542  0.13604  3.43688  2.79415     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     29   3.38542  0.13604  3.43688  2.79415     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     30   3.04708  2.56869  3.09681  0.18552     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     31   2.91847  3.54565  0.12187  3.44599     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     32   3.38542  0.13604  3.43688  2.79415     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     33   2.91847  3.54565  0.12187  3.44599     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     34   2.91847  3.54565  0.12187  3.44599     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     35   0.14748  3.33893  2.77499  3.23671     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     36   0.14748  3.33893  2.77499  3.23671     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     37   2.91847  3.54565  0.12187  3.44599     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     38   2.91847  3.54565  0.12187  3.44599     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     39   0.14748  3.33893  2.77499  3.23671     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     40   3.04708  2.56869  3.09681  0.18552     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     41   3.38542  0.13604  3.43688  2.79415     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     42   0.14748  3.33893  2.77499  3.23671     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     43   3.04708  2.56869  3.09681  0.18552     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     44   0.14748  3.33893  2.77499  3.23671     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
+     45   2.91847  3.54565  0.12187  3.44599     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01906  3.96959        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Tu_1_SSU_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 15:02:03 2012
+NSEQ  21
+EFFN  3.227417
+CKSUM 1846859552
+STATS LOCAL MSV       -8.0048  0.71932
+STATS LOCAL VITERBI   -7.6837  0.71932
+STATS LOCAL FORWARD   -4.1095  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27188  1.62648  1.24658  1.44567
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  0.00000        *
+      1   0.14606  3.34927  2.78175  3.24802      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+      2   2.92579  3.55621  0.12067  3.45764      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+      3   3.05744  2.57529  3.10678  0.18378      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+      4   3.39736  0.13455  3.44832  2.80290      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+      5   2.92579  3.55621  0.12067  3.45764      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+      6   3.05744  2.57529  3.10678  0.18378      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+      7   0.14606  3.34927  2.78175  3.24802      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+      8   0.14606  3.34927  2.78175  3.24802      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+      9   3.39736  0.13455  3.44832  2.80290      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     10   0.14606  3.34927  2.78175  3.24802     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     11   0.14606  3.34927  2.78175  3.24802     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     12   2.92579  3.55621  0.12067  3.45764     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     13   2.92579  3.55621  0.12067  3.45764     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     14   3.05744  2.57529  3.10678  0.18378     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     15   3.05744  2.57529  3.10678  0.18378     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     16   3.05744  2.57529  3.10678  0.18378     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     17   3.39736  0.13455  3.44832  2.80290     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     18   3.39736  0.13455  3.44832  2.80290     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     19   2.92579  3.55621  0.12067  3.45764     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     20   3.05744  2.57529  3.10678  0.18378     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     21   0.14606  3.34927  2.78175  3.24802     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     22   2.92579  3.55621  0.12067  3.45764     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     23   2.92579  3.55621  0.12067  3.45764     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     24   3.05744  2.57529  3.10678  0.18378     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     25   2.92579  3.55621  0.12067  3.45764     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     26   0.14606  3.34927  2.78175  3.24802     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     27   0.14606  3.34927  2.78175  3.24802     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     28   3.39736  0.13455  3.44832  2.80290     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     29   3.39736  0.13455  3.44832  2.80290     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     30   3.05744  2.57529  3.10678  0.18378     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     31   2.92579  3.55621  0.12067  3.45764     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     32   3.39736  0.13455  3.44832  2.80290     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     33   2.92579  3.55621  0.12067  3.45764     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     34   2.92579  3.55621  0.12067  3.45764     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     35   0.14606  3.34927  2.78175  3.24802     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     36   0.14606  3.34927  2.78175  3.24802     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     37   2.92579  3.55621  0.12067  3.45764     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     38   2.92579  3.55621  0.12067  3.45764     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     39   0.14606  3.34927  2.78175  3.24802     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     40   3.05744  2.57529  3.10678  0.18378     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     41   3.39736  0.13455  3.44832  2.80290     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     42   0.14606  3.34927  2.78175  3.24802     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     43   3.05744  2.57529  3.10678  0.18378     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     44   3.05744  2.57529  3.10678  0.18378     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99405  3.99405  1.46634  0.26236  1.09861  0.40547
+     45   0.14606  3.34927  2.78175  3.24802     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01895  3.97545        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Tu_1_SSU_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb  7 15:01:54 2012
+NSEQ  7
+EFFN  3.216309
+CKSUM 2437150758
+STATS LOCAL MSV       -7.9739  0.71932
+STATS LOCAL VITERBI   -7.6739  0.71932
+STATS LOCAL FORWARD   -4.1316  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33300  1.62698  1.18954  1.44633
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  0.00000        *
+      1   0.14656  3.34560  2.77935  3.24400      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      2   2.92319  3.55246  0.12110  3.45350      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      3   3.05375  2.57294  3.10323  0.18440      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      4   3.39312  0.13508  3.44425  2.79979      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      5   2.92319  3.55246  0.12110  3.45350      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      6   3.05375  2.57294  3.10323  0.18440      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      7   0.14656  3.34560  2.77935  3.24400      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      8   0.14656  3.34560  2.77935  3.24400      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      9   3.39312  0.13508  3.44425  2.79979      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     10   0.14656  3.34560  2.77935  3.24400     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     11   0.14656  3.34560  2.77935  3.24400     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     12   2.92319  3.55246  0.12110  3.45350     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     13   2.92319  3.55246  0.12110  3.45350     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     14   3.05375  2.57294  3.10323  0.18440     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     15   3.05375  2.57294  3.10323  0.18440     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     16   3.05375  2.57294  3.10323  0.18440     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     17   3.39312  0.13508  3.44425  2.79979     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     18   3.39312  0.13508  3.44425  2.79979     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     19   2.92319  3.55246  0.12110  3.45350     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     20   3.05375  2.57294  3.10323  0.18440     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     21   0.14656  3.34560  2.77935  3.24400     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     22   2.92319  3.55246  0.12110  3.45350     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     23   2.92319  3.55246  0.12110  3.45350     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     24   3.05375  2.57294  3.10323  0.18440     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     25   2.92319  3.55246  0.12110  3.45350     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     26   0.14656  3.34560  2.77935  3.24400     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     27   0.14656  3.34560  2.77935  3.24400     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     28   3.39312  0.13508  3.44425  2.79979     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     29   3.39312  0.13508  3.44425  2.79979     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     30   3.05375  2.57294  3.10323  0.18440     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     31   2.92319  3.55246  0.12110  3.45350     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     32   3.39312  0.13508  3.44425  2.79979     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     33   2.92319  3.55246  0.12110  3.45350     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     34   2.92319  3.55246  0.12110  3.45350     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     35   0.14656  3.34560  2.77935  3.24400     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     36   0.14656  3.34560  2.77935  3.24400     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     37   2.92319  3.55246  0.12110  3.45350     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     38   2.92319  3.55246  0.12110  3.45350     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     39   0.14656  3.34560  2.77935  3.24400     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     40   3.05375  2.57294  3.10323  0.18440     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     41   3.39312  0.13508  3.44425  2.79979     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     42   0.14656  3.34560  2.77935  3.24400     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     43   3.05375  2.57294  3.10323  0.18440     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     44   2.92319  3.55246  0.12110  3.45350     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     45   3.05375  2.57294  3.10323  0.18440     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01899  3.97336        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:09:18 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3051067304
+STATS LOCAL MSV       -7.5529  0.72909
+STATS LOCAL VITERBI   -8.5278  0.72909
+STATS LOCAL FORWARD   -2.9668  0.72909
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.00986  2.11878  1.61526  1.14976
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   0.23862  2.84929  2.43386  2.70756     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:08:14 2012
+NSEQ  54
+EFFN  3.200317
+CKSUM 3049350485
+STATS LOCAL MSV       -8.0020  0.71933
+STATS LOCAL VITERBI   -7.6828  0.71933
+STATS LOCAL FORWARD   -4.3608  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33558  1.54668  1.18968  1.51539
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  0.00000        *
+      1   0.14729  3.34028  2.77587  3.23818      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+      2   2.91943  3.54702  0.12172  3.44751      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+      3   3.04842  2.56955  3.09811  0.18529      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+      4   3.38697  0.13585  3.43836  2.79529      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+      5   2.91943  3.54702  0.12172  3.44751      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+      6   3.04842  2.56955  3.09811  0.18529      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+      7   0.14729  3.34028  2.77587  3.23818      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+      8   0.14729  3.34028  2.77587  3.23818      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+      9   3.38697  0.13585  3.43836  2.79529      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     10   0.14729  3.34028  2.77587  3.23818     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     11   0.14729  3.34028  2.77587  3.23818     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     12   2.91943  3.54702  0.12172  3.44751     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     13   2.91943  3.54702  0.12172  3.44751     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     14   3.04842  2.56955  3.09811  0.18529     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     15   3.38697  0.13585  3.43836  2.79529     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     16   3.04842  2.56955  3.09811  0.18529     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     17   3.38697  0.13585  3.43836  2.79529     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     18   3.38697  0.13585  3.43836  2.79529     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     19   2.91943  3.54702  0.12172  3.44751     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     20   3.04842  2.56955  3.09811  0.18529     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     21   3.04842  2.56955  3.09811  0.18529     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     22   2.91943  3.54702  0.12172  3.44751     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     23   2.91943  3.54702  0.12172  3.44751     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     24   3.04842  2.56955  3.09811  0.18529     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     25   2.91943  3.54702  0.12172  3.44751     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     26   0.14729  3.34028  2.77587  3.23818     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     27   0.14729  3.34028  2.77587  3.23818     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     28   3.38697  0.13585  3.43836  2.79529     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     29   3.38697  0.13585  3.43836  2.79529     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     30   0.14729  3.34028  2.77587  3.23818     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     31   2.91943  3.54702  0.12172  3.44751     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     32   3.38697  0.13585  3.43836  2.79529     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     33   2.91943  3.54702  0.12172  3.44751     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     34   2.91943  3.54702  0.12172  3.44751     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     35   0.14729  3.34028  2.77587  3.23818     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     36   2.91943  3.54702  0.12172  3.44751     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     37   2.91943  3.54702  0.12172  3.44751     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     38   2.91943  3.54702  0.12172  3.44751     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     39   0.14729  3.34028  2.77587  3.23818     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     40   3.04842  2.56955  3.09811  0.18529     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     41   3.38697  0.13585  3.43836  2.79529     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     42   0.14729  3.34028  2.77587  3.23818     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     43   3.04842  2.56955  3.09811  0.18529     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     44   3.04842  2.56955  3.09811  0.18529     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03774  3.98904  3.98904  1.46634  0.26236  1.09861  0.40547
+     45   0.16973  3.25773  2.59185  3.15236     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01905  3.97035        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_foura_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:06:32 2012
+NSEQ  43
+EFFN  3.246521
+CKSUM 2560080350
+STATS LOCAL MSV       -8.0183  0.71933
+STATS LOCAL VITERBI   -7.8483  0.71933
+STATS LOCAL FORWARD   -4.2170  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27441  1.62473  1.24608  1.44474
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  0.00000        *
+      1   0.14520  3.35557  2.78585  3.25490      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+      2   2.93022  3.56264  0.11995  3.46472      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+      3   3.06375  2.57932  3.11285  0.18274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+      4   3.40463  0.13366  3.45529  2.80822      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+      5   2.93022  3.56264  0.11995  3.46472      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+      6   3.06375  2.57932  3.11285  0.18274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+      7   0.14520  3.35557  2.78585  3.25490      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+      8   0.14520  3.35557  2.78585  3.25490      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+      9   3.40463  0.13366  3.45529  2.80822      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     10   0.14520  3.35557  2.78585  3.25490     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     11   0.14520  3.35557  2.78585  3.25490     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     12   2.93022  3.56264  0.11995  3.46472     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     13   2.93022  3.56264  0.11995  3.46472     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     14   3.06375  2.57932  3.11285  0.18274     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     15   0.14520  3.35557  2.78585  3.25490     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     16   0.14520  3.35557  2.78585  3.25490     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     17   3.40463  0.13366  3.45529  2.80822     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     18   3.40463  0.13366  3.45529  2.80822     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     19   2.93022  3.56264  0.11995  3.46472     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     20   3.06375  2.57932  3.11285  0.18274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     21   0.14520  3.35557  2.78585  3.25490     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     22   2.93022  3.56264  0.11995  3.46472     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     23   2.93022  3.56264  0.11995  3.46472     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     24   3.06375  2.57932  3.11285  0.18274     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     25   2.93022  3.56264  0.11995  3.46472     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     26   0.14520  3.35557  2.78585  3.25490     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     27   0.14520  3.35557  2.78585  3.25490     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     28   3.40463  0.13366  3.45529  2.80822     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     29   3.40463  0.13366  3.45529  2.80822     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     30   3.06375  2.57932  3.11285  0.18274     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     31   2.93022  3.56264  0.11995  3.46472     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     32   3.40463  0.13366  3.45529  2.80822     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     33   2.93022  3.56264  0.11995  3.46472     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     34   2.93022  3.56264  0.11995  3.46472     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     35   3.06375  2.57932  3.11285  0.18274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     36   3.06375  2.57932  3.11285  0.18274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     37   2.93022  3.56264  0.11995  3.46472     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     38   2.93022  3.56264  0.11995  3.46472     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     39   0.14520  3.35557  2.78585  3.25490     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     40   3.06375  2.57932  3.11285  0.18274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     41   3.40463  0.13366  3.45529  2.80822     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     42   0.14520  3.35557  2.78585  3.25490     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     43   3.06375  2.57932  3.11285  0.18274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     44   3.06375  2.57932  3.11285  0.18274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99756  3.99756  1.46634  0.26236  1.09861  0.40547
+     45   0.18820  2.90547  2.68890  3.01856     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97903        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_fourb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:07:36 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4122535879
+STATS LOCAL MSV       -7.3837  0.72782
+STATS LOCAL VITERBI   -8.2233  0.72782
+STATS LOCAL FORWARD   -3.6249  0.72782
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28359  1.60112  1.25644  1.44128
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_fourc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:07:43 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2504494684
+STATS LOCAL MSV       -7.4175  0.72862
+STATS LOCAL VITERBI   -8.2203  0.72862
+STATS LOCAL FORWARD   -3.6723  0.72862
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27979  1.63855  1.30647  1.35919
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.15554  1.00938  2.23102  0.88601     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_fourd_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:07:49 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2556732940
+STATS LOCAL MSV       -7.5647  0.72840
+STATS LOCAL VITERBI   -8.3666  0.72840
+STATS LOCAL FORWARD   -3.6454  0.72840
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.36979  1.59381  1.20294  1.41725
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.57915  2.25909  2.64442  0.28946     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   1.03732  1.95876  1.96551  1.00928     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_foure_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:07:57 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3676828728
+STATS LOCAL MSV       -8.0917  0.72037
+STATS LOCAL VITERBI   -7.8615  0.72037
+STATS LOCAL FORWARD   -3.9930  0.72037
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21590  1.70640  1.30590  1.38186
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.86982  3.47591  0.13017  3.36931     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.97980  2.52563  3.03204  0.19727     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_fourf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:08:02 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 730859438
+STATS LOCAL MSV       -7.3530  0.72812
+STATS LOCAL VITERBI   -8.3961  0.72812
+STATS LOCAL FORWARD   -3.4972  0.72812
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.18461  1.66969  1.36387  1.38566
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
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+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:09:29 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 568477423
+STATS LOCAL MSV       -7.3282  0.72906
+STATS LOCAL VITERBI   -8.4171  0.72906
+STATS LOCAL FORWARD   -3.4465  0.72906
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.13241  1.88183  1.41756  1.26186
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.15554  1.00938  2.23102  0.88601     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   0.23862  2.84929  2.43386  2.70756     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_onea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:04:23 2012
+NSEQ  308
+EFFN  3.379089
+CKSUM 1720090319
+STATS LOCAL MSV       -7.3882  0.71934
+STATS LOCAL VITERBI   -7.6658  0.71934
+STATS LOCAL FORWARD   -4.1327  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27417  1.62331  1.24449  1.44815
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  0.00000        *
+      1   0.13956  3.39815  2.81353  3.30152      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+      2   2.95997  3.60588  0.11520  3.51244      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+      3   3.10671  2.60665  3.15417  0.17579      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+      4   3.45371  0.12778  3.50229  2.84397      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+      5   2.79926  3.53221  0.13046  3.43525      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+      6   3.10671  2.60665  3.15417  0.17579      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+      7   0.13956  3.39815  2.81353  3.30152      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+      8   0.13956  3.39815  2.81353  3.30152      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+      9   3.45371  0.12778  3.50229  2.84397      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     10   0.13956  3.39815  2.81353  3.30152     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     11   0.13956  3.39815  2.81353  3.30152     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     12   2.95997  3.60588  0.11520  3.51244     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     13   2.95997  3.60588  0.11520  3.51244     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     14   3.10671  2.60665  3.15417  0.17579     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     15   2.87915  2.09473  2.93510  0.26450     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     16   3.10671  2.60665  3.15417  0.17579     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     17   3.30322  0.16113  3.35642  2.56139     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     18   3.34642  0.15099  3.39824  2.63801     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     19   2.95997  3.60588  0.11520  3.51244     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     20   3.10671  2.60665  3.15417  0.17579     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     21   0.13956  3.39815  2.81353  3.30152     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     22   2.95997  3.60588  0.11520  3.51244     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     23   2.95997  3.60588  0.11520  3.51244     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     24   3.10671  2.60665  3.15417  0.17579     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     25   2.95997  3.60588  0.11520  3.51244     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     26   0.13956  3.39815  2.81353  3.30152     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     27   0.13956  3.39815  2.81353  3.30152     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     28   3.45371  0.12778  3.50229  2.84397     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     29   3.45371  0.12778  3.50229  2.84397     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     30   3.10671  2.60665  3.15417  0.17579     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     31   2.95997  3.60588  0.11520  3.51244     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     32   3.45371  0.12778  3.50229  2.84397     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     33   2.72689  3.49604  0.13836  3.39690     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     34   2.81325  3.53900  0.12901  3.44242     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     35   0.13956  3.39815  2.81353  3.30152     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     36   0.21072  3.15491  2.30541  3.04413     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     37   2.95997  3.60588  0.11520  3.51244     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     38   2.95997  3.60588  0.11520  3.51244     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     39   0.13956  3.39815  2.81353  3.30152     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     40   3.10671  2.60665  3.15417  0.17579     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     41   3.45371  0.12778  3.50229  2.84397     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     42   0.13956  3.39815  2.81353  3.30152     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     43   3.04954  2.46530  3.09897  0.19536     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     44   3.05662  2.48215  3.10578  0.19286     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02161  4.02161  1.46634  0.26236  1.09861  0.40547
+     45   0.18742  3.00518  2.70132  2.91404     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01842  4.00352        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_oneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:04:30 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2202534948
+STATS LOCAL MSV       -7.9132  0.72042
+STATS LOCAL VITERBI   -7.9380  0.72042
+STATS LOCAL FORWARD   -3.9845  0.72042
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16204  1.70561  1.36957  1.38121
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   0.15719  3.27118  2.73043  3.16274      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.86982  3.47591  0.13017  3.36931     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:09:09 2012
+NSEQ  40
+EFFN  3.305664
+CKSUM 785789016
+STATS LOCAL MSV       -8.0264  0.71934
+STATS LOCAL VITERBI   -7.7303  0.71934
+STATS LOCAL FORWARD   -4.0831  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26454  1.62666  1.26380  1.43352
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  0.00000        *
+      1   0.14262  3.37480  2.79837  3.27595      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.10155  4.00836  2.54589  1.46634  0.26236  1.09861  0.40547
+      2   2.86303  3.46626  0.13137  3.35872      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03942  3.94623  3.94623  1.46634  0.26236  0.38071  1.15004
+      3   3.08310  2.59163  3.13146  0.17957      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      4   3.42681  0.13096  3.47654  2.82441      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      5   2.94371  3.58221  0.11777  3.48630      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      6   3.08310  2.59163  3.13146  0.17957      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      7   0.14262  3.37480  2.79837  3.27595      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      8   0.14262  3.37480  2.79837  3.27595      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      9   3.42681  0.13096  3.47654  2.82441      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.10189  4.00836  2.54206  1.46634  0.26236  1.09861  0.40547
+     10   0.15868  3.26127  2.72386  3.15194     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03943  3.94591  3.94591  1.46634  0.26236  0.37950  1.15265
+     11   0.14262  3.37480  2.79837  3.27595     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     12   2.94371  3.58221  0.11777  3.48630     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     13   2.94371  3.58221  0.11777  3.48630     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     14   3.08310  2.59163  3.13146  0.17957     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     15   3.08310  2.59163  3.13146  0.17957     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     16   3.08310  2.59163  3.13146  0.17957     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     17   3.42681  0.13096  3.47654  2.82441     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     18   3.42681  0.13096  3.47654  2.82441     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     19   2.94371  3.58221  0.11777  3.48630     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     20   3.08310  2.59163  3.13146  0.17957     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     21   0.14262  3.37480  2.79837  3.27595     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.38391  4.00836  1.20182  1.46634  0.26236  1.09861  0.40547
+     22   2.41934  2.88343  0.23580  2.73124     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.05195  3.67640  3.67640  1.46634  0.26236  0.11407  2.22746
+     23   2.94371  3.58221  0.11777  3.48630     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     24   3.08310  2.59163  3.13146  0.17957     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     25   2.94371  3.58221  0.11777  3.48630     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     26   0.14262  3.37480  2.79837  3.27595     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     27   0.14262  3.37480  2.79837  3.27595     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.13583  4.00836  2.21785  1.46634  0.26236  1.09861  0.40547
+     28   3.22438  0.15815  3.28213  2.67433     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04077  3.91330  3.91330  1.46634  0.26236  0.28799  1.38536
+     29   3.42681  0.13096  3.47654  2.82441     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     30   3.08310  2.59163  3.13146  0.17957     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     31   2.94371  3.58221  0.11777  3.48630     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     32   3.42681  0.13096  3.47654  2.82441     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     33   2.94371  3.58221  0.11777  3.48630     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     34   2.94371  3.58221  0.11777  3.48630     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     35   0.14262  3.37480  2.79837  3.27595     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     36   0.14262  3.37480  2.79837  3.27595     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     37   2.94371  3.58221  0.11777  3.48630     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     38   2.94371  3.58221  0.11777  3.48630     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     39   0.14262  3.37480  2.79837  3.27595     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     40   3.08310  2.59163  3.13146  0.17957     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     41   3.42681  0.13096  3.47654  2.82441     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     42   0.14262  3.37480  2.79837  3.27595     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     43   3.08310  2.59163  3.13146  0.17957     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     44   3.08310  2.59163  3.13146  0.17957     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     45   0.14262  3.37480  2.79837  3.27595     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01867  3.99003        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:08:22 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 879004445
+STATS LOCAL MSV       -7.4348  0.72760
+STATS LOCAL VITERBI   -8.1769  0.72760
+STATS LOCAL FORWARD   -3.4529  0.72760
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23449  1.53956  1.25635  1.56135
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_ten_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:09:36 2012
+NSEQ  4
+EFFN  3.433594
+CKSUM 336901453
+STATS LOCAL MSV       -7.3635  0.71933
+STATS LOCAL VITERBI   -7.6826  0.71933
+STATS LOCAL FORWARD   -4.1239  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28125  1.62039  1.25772  1.42633
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  0.00000        *
+      1   0.13738  3.41512  2.82452  3.32011      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      2   2.97169  3.62301  0.11337  3.53137      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      3   3.12394  2.61759  3.17074  0.17309      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      4   3.47324  0.12552  3.52097  2.85812      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      5   2.97169  3.62301  0.11337  3.53137      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      6   3.12394  2.61759  3.17074  0.17309      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      7   0.13738  3.41512  2.82452  3.32011      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      8   0.13738  3.41512  2.82452  3.32011      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      9   3.47324  0.12552  3.52097  2.85812      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     10   0.13738  3.41512  2.82452  3.32011     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     11   0.13738  3.41512  2.82452  3.32011     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     12   2.97169  3.62301  0.11337  3.53137     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     13   2.97169  3.62301  0.11337  3.53137     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     14   3.12394  2.61759  3.17074  0.17309     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     15   3.12394  2.61759  3.17074  0.17309     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     16   3.12394  2.61759  3.17074  0.17309     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     17   3.47324  0.12552  3.52097  2.85812     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     18   3.47324  0.12552  3.52097  2.85812     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     19   2.97169  3.62301  0.11337  3.53137     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     20   3.12394  2.61759  3.17074  0.17309     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     21   0.13738  3.41512  2.82452  3.32011     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     22   2.97169  3.62301  0.11337  3.53137     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     23   2.97169  3.62301  0.11337  3.53137     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     24   3.12394  2.61759  3.17074  0.17309     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     25   2.97169  3.62301  0.11337  3.53137     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     26   0.13738  3.41512  2.82452  3.32011     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     27   0.13738  3.41512  2.82452  3.32011     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     28   3.47324  0.12552  3.52097  2.85812     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     29   3.47324  0.12552  3.52097  2.85812     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     30   3.12394  2.61759  3.17074  0.17309     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     31   2.97169  3.62301  0.11337  3.53137     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     32   3.47324  0.12552  3.52097  2.85812     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     33   1.66994  2.85289  0.37387  2.71814     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     34   2.97169  3.62301  0.11337  3.53137     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     35   0.13738  3.41512  2.82452  3.32011     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     36   0.13738  3.41512  2.82452  3.32011     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     37   2.97169  3.62301  0.11337  3.53137     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     38   2.97169  3.62301  0.11337  3.53137     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     39   0.13738  3.41512  2.82452  3.32011     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     40   3.12394  2.61759  3.17074  0.17309     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     41   3.47324  0.12552  3.52097  2.85812     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     42   0.13738  3.41512  2.82452  3.32011     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     43   3.12394  2.61759  3.17074  0.17309     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     44   3.12394  2.61759  3.17074  0.17309     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     45   0.52815  2.38917  2.28516  1.52859     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01824  4.01342        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_threea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:05:02 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3796533510
+STATS LOCAL MSV       -7.3854  0.72836
+STATS LOCAL VITERBI   -8.1792  0.72836
+STATS LOCAL FORWARD   -3.5609  0.72836
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.18248  1.82844  1.36144  1.28544
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_threeb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:05:11 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3183345847
+STATS LOCAL MSV       -7.8994  0.72084
+STATS LOCAL VITERBI   -7.8571  0.72084
+STATS LOCAL FORWARD   -3.9083  0.72084
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.10773  2.14067  1.43245  1.16029
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   0.15719  3.27118  2.73043  3.16274      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.86982  3.47591  0.13017  3.36931     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.97980  2.52563  3.03204  0.19727     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_threec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:05:17 2012
+NSEQ  9
+EFFN  3.563965
+CKSUM 867010079
+STATS LOCAL MSV       -7.5589  0.71932
+STATS LOCAL VITERBI   -7.7275  0.71932
+STATS LOCAL FORWARD   -4.2285  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.14705  1.93754  1.36394  1.26330
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  0.00000        *
+      1   0.13247  3.45449  2.84993  3.36328      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      2   2.99862  3.66252  0.10930  3.57508      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      3   3.16417  2.64312  3.20941  0.16696      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      4   2.46606  1.08588  2.53668  0.69646      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      5   2.99862  3.66252  0.10930  3.57508      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      6   3.16417  2.64312  3.20941  0.16696      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      7   0.13247  3.45449  2.84993  3.36328      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      8   0.13247  3.45449  2.84993  3.36328      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      9   2.54466  0.58530  2.61593  1.23285      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     10   0.13247  3.45449  2.84993  3.36328     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     11   0.13247  3.45449  2.84993  3.36328     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     12   2.99862  3.66252  0.10930  3.57508     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     13   2.99862  3.66252  0.10930  3.57508     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     14   3.16417  2.64312  3.20941  0.16696     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     15   3.16417  2.64312  3.20941  0.16696     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     16   3.16417  2.64312  3.20941  0.16696     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     17   3.51842  0.12048  3.56419  2.89070     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     18   3.16417  2.64312  3.20941  0.16696     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     19   2.99862  3.66252  0.10930  3.57508     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     20   3.16417  2.64312  3.20941  0.16696     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     21   0.13247  3.45449  2.84993  3.36328     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     22   2.99862  3.66252  0.10930  3.57508     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     23   2.99862  3.66252  0.10930  3.57508     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     24   3.16417  2.64312  3.20941  0.16696     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     25   0.13247  3.45449  2.84993  3.36328     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     26   0.13247  3.45449  2.84993  3.36328     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     27   0.13247  3.45449  2.84993  3.36328     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     28   3.51842  0.12048  3.56419  2.89070     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     29   3.51842  0.12048  3.56419  2.89070     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     30   3.16417  2.64312  3.20941  0.16696     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     31   2.99862  3.66252  0.10930  3.57508     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     32   3.51842  0.12048  3.56419  2.89070     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     33   0.13247  3.45449  2.84993  3.36328     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     34   2.99862  3.66252  0.10930  3.57508     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     35   0.13247  3.45449  2.84993  3.36328     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     36   0.13247  3.45449  2.84993  3.36328     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     37   2.99862  3.66252  0.10930  3.57508     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     38   2.99862  3.66252  0.10930  3.57508     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     39   0.13247  3.45449  2.84993  3.36328     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     40   3.16417  2.64312  3.20941  0.16696     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     41   3.16417  2.64312  3.20941  0.16696     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     42   0.13247  3.45449  2.84993  3.36328     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     43   3.16417  2.64312  3.20941  0.16696     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     44   3.16417  2.64312  3.20941  0.16696     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     45   0.13247  3.45449  2.84993  3.36328     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01781  4.03671        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_threed_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:05:22 2012
+NSEQ  5
+EFFN  3.471680
+CKSUM 2613461629
+STATS LOCAL MSV       -7.4492  0.71933
+STATS LOCAL VITERBI   -7.8222  0.71933
+STATS LOCAL FORWARD   -4.1448  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.07250  1.91694  1.49255  1.25179
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  0.00000        *
+      1   0.13590  3.42680  2.83207  3.33291      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+      2   2.97972  3.63476  0.11214  3.54436      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+      3   3.13583  2.62514  3.18217  0.17125      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+      4   3.13583  2.62514  3.18217  0.17125      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+      5   2.97972  3.63476  0.11214  3.54436      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+      6   3.13583  2.62514  3.18217  0.17125      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+      7   0.13590  3.42680  2.83207  3.33291      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+      8   0.13590  3.42680  2.83207  3.33291      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+      9   3.48665  0.12400  3.53381  2.86782      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     10   0.13590  3.42680  2.83207  3.33291     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     11   0.13590  3.42680  2.83207  3.33291     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     12   2.97972  3.63476  0.11214  3.54436     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     13   2.97972  3.63476  0.11214  3.54436     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     14   3.13583  2.62514  3.18217  0.17125     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     15   3.13583  2.62514  3.18217  0.17125     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     16   3.13583  2.62514  3.18217  0.17125     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     17   3.48665  0.12400  3.53381  2.86782     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     18   3.13583  2.62514  3.18217  0.17125     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     19   0.13590  3.42680  2.83207  3.33291     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     20   3.13583  2.62514  3.18217  0.17125     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     21   0.13590  3.42680  2.83207  3.33291     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     22   2.97972  3.63476  0.11214  3.54436     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     23   2.97972  3.63476  0.11214  3.54436     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     24   3.13583  2.62514  3.18217  0.17125     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     25   0.13590  3.42680  2.83207  3.33291     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     26   0.13590  3.42680  2.83207  3.33291     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     27   0.13590  3.42680  2.83207  3.33291     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     28   3.48665  0.12400  3.53381  2.86782     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     29   3.48665  0.12400  3.53381  2.86782     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     30   3.13583  2.62514  3.18217  0.17125     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     31   0.63044  2.58447  1.18660  2.44243     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     32   3.48665  0.12400  3.53381  2.86782     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     33   0.13590  3.42680  2.83207  3.33291     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     34   2.97972  3.63476  0.11214  3.54436     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     35   0.13590  3.42680  2.83207  3.33291     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     36   0.13590  3.42680  2.83207  3.33291     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     37   2.97972  3.63476  0.11214  3.54436     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     38   2.97972  3.63476  0.11214  3.54436     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     39   0.13590  3.42680  2.83207  3.33291     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     40   3.13583  2.62514  3.18217  0.17125     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     41   3.13583  2.62514  3.18217  0.17125     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     42   0.13590  3.42680  2.83207  3.33291     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     43   3.13583  2.62514  3.18217  0.17125     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     44   3.13583  2.62514  3.18217  0.17125     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03590  4.03807  4.03807  1.46634  0.26236  1.09861  0.40547
+     45   0.13590  3.42680  2.83207  3.33291     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01811  4.02028        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_threee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:05:28 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1955491560
+STATS LOCAL MSV       -7.3656  0.72836
+STATS LOCAL VITERBI   -8.3251  0.72836
+STATS LOCAL FORWARD   -3.5373  0.72836
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.18285  1.82845  1.36100  1.28545
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_threef_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:05:34 2012
+NSEQ  7
+EFFN  3.441895
+CKSUM 3547224972
+STATS LOCAL MSV       -7.5895  0.71931
+STATS LOCAL VITERBI   -7.7812  0.71931
+STATS LOCAL FORWARD   -4.2241  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.13605  1.80814  1.40455  1.31126
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  0.00000        *
+      1   0.13705  3.41768  2.82617  3.32291      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+      2   2.97345  3.62558  0.11310  3.53422      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+      3   3.12654  2.61924  3.17324  0.17268      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+      4   3.47618  0.12519  3.52379  2.86024      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+      5   2.97345  3.62558  0.11310  3.53422      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+      6   3.12654  2.61924  3.17324  0.17268      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+      7   0.13705  3.41768  2.82617  3.32291      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+      8   0.13705  3.41768  2.82617  3.32291      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+      9   3.47618  0.12519  3.52379  2.86024      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     10   0.13705  3.41768  2.82617  3.32291     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     11   0.13705  3.41768  2.82617  3.32291     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     12   2.97345  3.62558  0.11310  3.53422     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     13   2.97345  3.62558  0.11310  3.53422     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     14   3.12654  2.61924  3.17324  0.17268     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     15   3.12654  2.61924  3.17324  0.17268     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     16   3.12654  2.61924  3.17324  0.17268     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     17   3.47618  0.12519  3.52379  2.86024     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     18   3.12654  2.61924  3.17324  0.17268     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     19   0.13705  3.41768  2.82617  3.32291     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     20   3.12654  2.61924  3.17324  0.17268     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     21   0.13705  3.41768  2.82617  3.32291     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     22   2.97345  3.62558  0.11310  3.53422     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     23   2.97345  3.62558  0.11310  3.53422     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     24   3.12654  2.61924  3.17324  0.17268     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     25   1.05262  2.56256  0.72406  2.41809     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     26   0.13705  3.41768  2.82617  3.32291     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     27   0.13705  3.41768  2.82617  3.32291     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     28   3.47618  0.12519  3.52379  2.86024     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     29   3.47618  0.12519  3.52379  2.86024     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     30   3.12654  2.61924  3.17324  0.17268     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     31   2.97345  3.62558  0.11310  3.53422     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     32   3.47618  0.12519  3.52379  2.86024     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     33   0.13705  3.41768  2.82617  3.32291     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     34   2.97345  3.62558  0.11310  3.53422     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     35   0.13705  3.41768  2.82617  3.32291     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     36   0.13705  3.41768  2.82617  3.32291     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     37   2.97345  3.62558  0.11310  3.53422     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     38   2.97345  3.62558  0.11310  3.53422     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     39   0.13705  3.41768  2.82617  3.32291     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     40   3.12654  2.61924  3.17324  0.17268     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     41   3.12654  2.61924  3.17324  0.17268     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     42   0.13705  3.41768  2.82617  3.32291     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     43   3.12654  2.61924  3.17324  0.17268     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     44   3.12654  2.61924  3.17324  0.17268     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03280  4.03280  1.46634  0.26236  1.09861  0.40547
+     45   0.13705  3.41768  2.82617  3.32291     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01821  4.01492        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_threeg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:05:40 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3041166323
+STATS LOCAL MSV       -7.9743  0.72060
+STATS LOCAL VITERBI   -7.7231  0.72060
+STATS LOCAL FORWARD   -4.1679  0.72060
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16053  1.89954  1.36697  1.26526
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.86982  3.47591  0.13017  3.36931     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.97980  2.52563  3.03204  0.19727     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_threeh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:05:46 2012
+NSEQ  5
+EFFN  3.442383
+CKSUM 2161333903
+STATS LOCAL MSV       -7.3754  0.71932
+STATS LOCAL VITERBI   -7.7402  0.71932
+STATS LOCAL FORWARD   -4.1264  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.20568  1.98234  1.30084  1.23629
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  0.00000        *
+      1   0.13703  3.41783  2.82627  3.32308      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      2   2.97356  3.62574  0.11309  3.53438      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      3   3.12669  2.61934  3.17338  0.17266      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      4   3.12669  2.61934  3.17338  0.17266      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      5   2.97356  3.62574  0.11309  3.53438      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      6   3.12669  2.61934  3.17338  0.17266      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      7   0.13703  3.41783  2.82627  3.32308      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      8   0.13703  3.41783  2.82627  3.32308      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+      9   3.47635  0.12517  3.52395  2.86037      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     10   0.13703  3.41783  2.82627  3.32308     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     11   0.13703  3.41783  2.82627  3.32308     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     12   2.97356  3.62574  0.11309  3.53438     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     13   2.97356  3.62574  0.11309  3.53438     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     14   3.12669  2.61934  3.17338  0.17266     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     15   3.12669  2.61934  3.17338  0.17266     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     16   3.12669  2.61934  3.17338  0.17266     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     17   3.47635  0.12517  3.52395  2.86037     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     18   3.12669  2.61934  3.17338  0.17266     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     19   2.97356  3.62574  0.11309  3.53438     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     20   3.12669  2.61934  3.17338  0.17266     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     21   0.13703  3.41783  2.82627  3.32308     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     22   2.97356  3.62574  0.11309  3.53438     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     23   2.97356  3.62574  0.11309  3.53438     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     24   3.12669  2.61934  3.17338  0.17266     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     25   2.97356  3.62574  0.11309  3.53438     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     26   0.13703  3.41783  2.82627  3.32308     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     27   0.13703  3.41783  2.82627  3.32308     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     28   3.47635  0.12517  3.52395  2.86037     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     29   3.47635  0.12517  3.52395  2.86037     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     30   3.12669  2.61934  3.17338  0.17266     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     31   2.97356  3.62574  0.11309  3.53438     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     32   2.45448  0.73156  2.52673  1.04125     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     33   0.13703  3.41783  2.82627  3.32308     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     34   2.97356  3.62574  0.11309  3.53438     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     35   0.13703  3.41783  2.82627  3.32308     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     36   0.13703  3.41783  2.82627  3.32308     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     37   2.97356  3.62574  0.11309  3.53438     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     38   2.97356  3.62574  0.11309  3.53438     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     39   0.13703  3.41783  2.82627  3.32308     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     40   3.12669  2.61934  3.17338  0.17266     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     41   3.12669  2.61934  3.17338  0.17266     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     42   0.13703  3.41783  2.82627  3.32308     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     43   3.12669  2.61934  3.17338  0.17266     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     44   3.12669  2.61934  3.17338  0.17266     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03609  4.03289  4.03289  1.46634  0.26236  1.09861  0.40547
+     45   0.13703  3.41783  2.82627  3.32308     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01821  4.01501        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_threei_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:05:52 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2535529293
+STATS LOCAL MSV       -7.9748  0.72090
+STATS LOCAL VITERBI   -7.7746  0.72090
+STATS LOCAL FORWARD   -4.2374  0.72090
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.17940  1.79306  1.35318  1.31800
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   0.54133  2.56226  1.37841  2.42004     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.86982  3.47591  0.13017  3.36931     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.97980  2.52563  3.03204  0.19727     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_threej_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:05:58 2012
+NSEQ  4
+EFFN  3.691406
+CKSUM 4225539494
+STATS LOCAL MSV       -7.5166  0.71931
+STATS LOCAL VITERBI   -7.7824  0.71931
+STATS LOCAL FORWARD   -4.2751  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11580  2.02418  1.42669  1.20350
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  0.00000        *
+      1   0.12806  3.49137  2.87366  3.40376      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+      2   3.02354  3.69924  0.10566  3.61577      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+      3   3.20221  2.66723  3.24596  0.16140      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+      4   2.68719  1.57817  2.75090  0.41293      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+      5   0.84713  2.57557  0.89799  2.43206      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+      6   3.20221  2.66723  3.24596  0.16140      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+      7   0.12806  3.49137  2.87366  3.40376      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+      8   0.12806  3.49137  2.87366  3.40376      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+      9   3.56062  0.11598  3.60449  2.92094      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     10   0.12806  3.49137  2.87366  3.40376     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     11   0.12806  3.49137  2.87366  3.40376     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     12   3.02354  3.69924  0.10566  3.61577     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     13   3.02354  3.69924  0.10566  3.61577     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     14   3.20221  2.66723  3.24596  0.16140     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     15   3.20221  2.66723  3.24596  0.16140     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     16   3.20221  2.66723  3.24596  0.16140     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     17   3.56062  0.11598  3.60449  2.92094     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     18   3.20221  2.66723  3.24596  0.16140     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     19   0.12806  3.49137  2.87366  3.40376     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     20   3.20221  2.66723  3.24596  0.16140     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     21   0.12806  3.49137  2.87366  3.40376     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     22   3.02354  3.69924  0.10566  3.61577     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     23   3.02354  3.69924  0.10566  3.61577     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     24   3.20221  2.66723  3.24596  0.16140     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     25   0.12806  3.49137  2.87366  3.40376     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     26   0.12806  3.49137  2.87366  3.40376     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     27   0.12806  3.49137  2.87366  3.40376     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     28   3.56062  0.11598  3.60449  2.92094     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     29   3.56062  0.11598  3.60449  2.92094     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     30   3.20221  2.66723  3.24596  0.16140     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     31   3.02354  3.69924  0.10566  3.61577     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     32   3.20221  2.66723  3.24596  0.16140     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     33   1.68271  2.91419  0.35958  2.78204     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     34   3.02354  3.69924  0.10566  3.61577     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     35   0.12806  3.49137  2.87366  3.40376     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     36   0.12806  3.49137  2.87366  3.40376     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     37   3.02354  3.69924  0.10566  3.61577     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     38   3.02354  3.69924  0.10566  3.61577     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     39   0.12806  3.49137  2.87366  3.40376     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     40   3.20221  2.66723  3.24596  0.16140     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     41   3.20221  2.66723  3.24596  0.16140     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     42   0.12806  3.49137  2.87366  3.40376     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     43   3.20221  2.66723  3.24596  0.16140     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     44   3.20221  2.66723  3.24596  0.16140     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03454  4.07608  4.07608  1.46634  0.26236  1.09861  0.40547
+     45   0.12806  3.49137  2.87366  3.40376     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01742  4.05896        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_threek_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:06:06 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1407147051
+STATS LOCAL MSV       -7.2036  0.72857
+STATS LOCAL VITERBI   -8.1048  0.72857
+STATS LOCAL FORWARD   -3.4860  0.72857
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.13655  1.91657  1.41832  1.23841
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_threel_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:06:14 2012
+NSEQ  4
+EFFN  3.613281
+CKSUM 3108264336
+STATS LOCAL MSV       -7.5996  0.71932
+STATS LOCAL VITERBI   -7.8269  0.71932
+STATS LOCAL FORWARD   -4.0756  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.05723  2.13065  1.49937  1.16941
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  0.00000        *
+      1   0.13072  3.46895  2.85924  3.37914      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+      2   3.00842  3.67695  0.10785  3.59106      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+      3   3.17904  2.65254  3.22370  0.16476      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+      4   2.45641  0.93977  2.52788  0.81258      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+      5   3.00842  3.67695  0.10785  3.59106      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+      6   3.17904  2.65254  3.22370  0.16476      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+      7   0.13072  3.46895  2.85924  3.37914      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+      8   0.13072  3.46895  2.85924  3.37914      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+      9   3.17904  2.65254  3.22370  0.16476      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     10   0.13072  3.46895  2.85924  3.37914     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     11   0.13072  3.46895  2.85924  3.37914     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     12   3.00842  3.67695  0.10785  3.59106     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     13   3.00842  3.67695  0.10785  3.59106     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     14   3.17904  2.65254  3.22370  0.16476     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     15   3.17904  2.65254  3.22370  0.16476     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     16   3.17904  2.65254  3.22370  0.16476     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     17   3.53498  0.11869  3.58001  2.90259     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     18   3.17904  2.65254  3.22370  0.16476     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     19   0.13072  3.46895  2.85924  3.37914     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     20   3.17904  2.65254  3.22370  0.16476     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     21   0.13072  3.46895  2.85924  3.37914     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     22   3.00842  3.67695  0.10785  3.59106     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     23   3.00842  3.67695  0.10785  3.59106     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     24   3.17904  2.65254  3.22370  0.16476     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     25   0.38000  2.83178  1.66010  2.70146     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     26   0.13072  3.46895  2.85924  3.37914     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     27   0.13072  3.46895  2.85924  3.37914     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     28   3.53498  0.11869  3.58001  2.90259     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     29   3.53498  0.11869  3.58001  2.90259     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     30   3.17904  2.65254  3.22370  0.16476     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     31   0.13072  3.46895  2.85924  3.37914     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     32   3.17904  2.65254  3.22370  0.16476     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     33   0.13072  3.46895  2.85924  3.37914     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     34   3.00842  3.67695  0.10785  3.59106     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     35   0.13072  3.46895  2.85924  3.37914     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     36   0.13072  3.46895  2.85924  3.37914     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     37   3.00842  3.67695  0.10785  3.59106     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     38   3.00842  3.67695  0.10785  3.59106     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     39   0.13072  3.46895  2.85924  3.37914     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     40   3.17904  2.65254  3.22370  0.16476     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     41   3.17904  2.65254  3.22370  0.16476     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     42   0.13072  3.46895  2.85924  3.37914     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     43   3.17904  2.65254  3.22370  0.16476     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     44   3.17904  2.65254  3.22370  0.16476     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03501  4.06273  4.06273  1.46634  0.26236  1.09861  0.40547
+     45   0.13072  3.46895  2.85924  3.37914     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01766  4.04538        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_threem_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:06:19 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3864954940
+STATS LOCAL MSV       -7.4586  0.72853
+STATS LOCAL VITERBI   -8.4340  0.72853
+STATS LOCAL FORWARD   -3.5240  0.72853
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.09390  1.82613  1.48235  1.28391
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:04:41 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4015792314
+STATS LOCAL MSV       -7.2796  0.72845
+STATS LOCAL VITERBI   -8.1289  0.72845
+STATS LOCAL FORWARD   -3.5183  0.72845
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.13757  1.82637  1.41961  1.28519
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Fungi_Ge_1_SSU_end_zero_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Feb 14 23:10:48 2012
+NSEQ  379
+EFFN  3.813942
+CKSUM 3504503792
+STATS LOCAL MSV       -7.0792  0.71932
+STATS LOCAL VITERBI   -7.5496  0.71932
+STATS LOCAL FORWARD   -4.0463  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.15435  1.80006  1.18618  1.54149
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  0.00000        *
+      1   0.14425  3.29860  2.79157  3.32230      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+      2   2.65011  2.36329  0.25126  2.85732      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+      3   0.16976  3.17643  2.78392  2.94499      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+      4   0.14813  3.18012  2.83686  3.28375      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+      5   0.12413  3.52540  2.89552  3.44114      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04793  4.09667  3.50082  1.46634  0.26236  1.09861  0.40547
+      6   3.03129  3.71070  0.10455  3.62847      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08303  4.08303  1.46634  0.26236  0.74298  0.64568
+      7   3.20211  2.59408  3.24588  0.16762      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+      8   2.83020  3.64242  0.12073  3.55658      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+      9   3.23761  2.68967  3.27997  0.15641      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     10   0.14008  3.28236  2.85600  3.33335     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     11   0.16511  2.99542  2.79810  3.18785     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     12   3.18479  0.14047  3.45034  2.84850     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     13   0.15234  3.13071  2.82703  3.25889     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     14   0.14288  3.45121  2.70633  3.36237     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03888  4.09667  3.83965  1.46634  0.26236  1.09861  0.40547
+     15   3.04095  3.72498  0.10319  3.64431     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03399  4.09178  4.09178  1.46634  0.26236  0.93480  0.49867
+     16   3.04628  3.73288  0.10244  3.65308     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     17   2.90839  1.94742  2.96451  0.28607     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     18   3.23761  2.68967  3.27997  0.15641     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     19   3.59941  0.11201  3.64153  2.94860     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     20   3.59941  0.11201  3.64153  2.94860     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     21   3.04628  3.73288  0.10244  3.65308     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     22   3.14021  2.65394  3.04919  0.17560     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     23   0.18261  3.21237  2.75977  2.75926     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.12306  4.09667  2.31102  1.46634  0.26236  1.09861  0.40547
+     24   2.82376  3.52989  0.12899  3.43199     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03692  4.01053  4.01053  1.46634  0.26236  0.28921  1.38171
+     25   3.04628  3.73288  0.10244  3.65308     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     26   3.23761  2.68967  3.27997  0.15641     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     27   3.04628  3.73288  0.10244  3.65308     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     28   0.12413  3.52540  2.89552  3.44114     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     29   0.12413  3.52540  2.89552  3.44114     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     30   3.59941  0.11201  3.64153  2.94860     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     31   2.64158  2.58212  3.01644  0.21795     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     32   3.04628  3.73288  0.10244  3.65308     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     33   3.59941  0.11201  3.64153  2.94860     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     34   2.46518  3.45088  0.16463  3.35020     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     35   3.04628  3.73288  0.10244  3.65308     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     36   0.19153  3.28257  2.35158  3.18081     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     37   3.00440  3.49743  0.11490  3.55084     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04146  4.09667  3.73045  1.46634  0.26236  1.09861  0.40547
+     38   3.03820  3.72092  0.10357  3.63981     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08928  4.08928  1.46634  0.26236  0.86991  0.54298
+     39   0.12413  3.52540  2.89552  3.44114     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     40   3.23761  2.68967  3.27997  0.15641     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     41   3.59941  0.11201  3.64153  2.94860     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     42   0.12413  3.52540  2.89552  3.44114     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     43   2.31158  2.38209  2.68058  0.30108     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     44   2.84371  2.53111  2.45551  0.25309     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09667  4.09667  1.46634  0.26236  1.09861  0.40547
+     45   0.21716  2.66765  2.60423  2.95989     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01705  4.07990        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Fungi_Ge_58S_end_missinged_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Nov 14 23:18:15 2012
+NSEQ  22
+EFFN  3.413330
+CKSUM 3038122402
+STATS LOCAL MSV       -7.3491  0.71932
+STATS LOCAL VITERBI   -7.8495  0.71932
+STATS LOCAL FORWARD   -4.1426  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.48189  1.44028  1.44954  1.19981
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  0.00000        *
+      1   3.46602  0.12635  3.51407  2.85290      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+      2   0.13818  3.40885  2.82046  3.31324      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+      3   3.11756  2.61354  3.16460  0.17408      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+      4   0.13818  3.40885  2.82046  3.31324      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+      5   3.46602  0.12635  3.51407  2.85290      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+      6   2.96737  3.61668  0.11404  3.52437      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+      7   2.96737  3.61668  0.11404  3.52437      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+      8   3.46602  0.12635  3.51407  2.85290      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+      9   0.13818  3.40885  2.82046  3.31324      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     10   3.46602  0.12635  3.51407  2.85290     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     11   2.94834  2.22083  3.00172  0.23654     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     12   2.96737  3.61668  0.11404  3.52437     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     13   3.11756  2.61354  3.16460  0.17408     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     14   0.13818  3.40885  2.82046  3.31324     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     15   3.46602  0.12635  3.51407  2.85290     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     16   3.11756  2.61354  3.16460  0.17408     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     17   3.11756  2.61354  3.16460  0.17408     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     18   2.96737  3.61668  0.11404  3.52437     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     19   3.11756  2.61354  3.16460  0.17408     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     20   0.13818  3.40885  2.82046  3.31324     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     21   3.46602  0.12635  3.51407  2.85290     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     22   0.23741  3.08623  2.16801  2.97104     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     23   2.96737  3.61668  0.11404  3.52437     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     24   3.11756  2.61354  3.16460  0.17408     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     25   0.13818  3.40885  2.82046  3.31324     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     26   2.96737  3.61668  0.11404  3.52437     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     27   2.96737  3.61668  0.11404  3.52437     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     28   3.11756  2.61354  3.16460  0.17408     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     29   3.46602  0.12635  3.51407  2.85290     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     30   3.11756  2.61354  3.16460  0.17408     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     31   2.96737  3.61668  0.11404  3.52437     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     32   3.11756  2.61354  3.16460  0.17408     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     33   2.94834  2.22083  3.00172  0.23654     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     34   3.11756  2.61354  3.16460  0.17408     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     35   3.46602  0.12635  3.51407  2.85290     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     36   0.13818  3.40885  2.82046  3.31324     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     37   2.96737  3.61668  0.11404  3.52437     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     38   0.13818  3.40885  2.82046  3.31324     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     39   2.96737  3.61668  0.11404  3.52437     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     40   3.11756  2.61354  3.16460  0.17408     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     41   3.46602  0.12635  3.51407  2.85290     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     42   0.13818  3.40885  2.82046  3.31324     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     43   3.46602  0.12635  3.51407  2.85290     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     44   3.11756  2.61354  3.16460  0.17408     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02773  4.02773  1.46634  0.26236  1.09861  0.40547
+     45   3.11756  2.61354  3.16460  0.17408     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01830  4.00975        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_eightyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:29:42 2013
+NSEQ  4
+EFFN  3.292969
+CKSUM 3324117154
+STATS LOCAL MSV       -8.0427  0.71931
+STATS LOCAL VITERBI   -7.6586  0.71931
+STATS LOCAL FORWARD   -3.9717  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63203  1.52553  1.25312  1.19948
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  0.00000        *
+      1   2.94085  3.57805  0.11823  3.48171      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      2   3.42209  0.13153  3.47201  2.82097      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      3   0.14316  3.37070  2.79571  3.27146      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      4   3.42209  0.13153  3.47201  2.82097      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      5   3.07897  2.58901  3.12749  0.18024      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      6   3.42209  0.13153  3.47201  2.82097      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      7   3.07897  2.58901  3.12749  0.18024      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      8   3.42209  0.13153  3.47201  2.82097      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      9   3.07897  2.58901  3.12749  0.18024      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     10   2.94085  3.57805  0.11823  3.48171     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     11   2.94085  3.57805  0.11823  3.48171     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     12   3.07897  2.58901  3.12749  0.18024     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     13   0.14316  3.37070  2.79571  3.27146     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     14   3.07897  2.58901  3.12749  0.18024     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     15   3.07897  2.58901  3.12749  0.18024     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     16   3.42209  0.13153  3.47201  2.82097     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     17   3.42209  0.13153  3.47201  2.82097     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     18   2.94085  3.57805  0.11823  3.48171     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     19   2.94085  3.57805  0.11823  3.48171     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     20   0.14316  3.37070  2.79571  3.27146     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     21   2.94085  3.57805  0.11823  3.48171     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     22   0.14316  3.37070  2.79571  3.27146     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     23   2.94085  3.57805  0.11823  3.48171     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     24   3.07897  2.58901  3.12749  0.18024     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     25   0.14316  3.37070  2.79571  3.27146     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     26   3.07897  2.58901  3.12749  0.18024     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     27   2.94085  3.57805  0.11823  3.48171     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     28   3.42209  0.13153  3.47201  2.82097     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     29   3.42209  0.13153  3.47201  2.82097     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     30   3.07897  2.58901  3.12749  0.18024     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     31   2.94085  3.57805  0.11823  3.48171     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     32   3.07897  2.58901  3.12749  0.18024     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     33   3.07897  2.58901  3.12749  0.18024     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     34   3.07897  2.58901  3.12749  0.18024     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     35   2.94085  3.57805  0.11823  3.48171     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     36   0.14316  3.37070  2.79571  3.27146     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     37   2.94085  3.57805  0.11823  3.48171     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     38   2.94085  3.57805  0.11823  3.48171     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     39   2.94085  3.57805  0.11823  3.48171     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     40   3.07897  2.58901  3.12749  0.18024     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     41   3.42209  0.13153  3.47201  2.82097     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     42   0.14316  3.37070  2.79571  3.27146     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     43   0.14316  3.37070  2.79571  3.27146     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     44   3.07897  2.58901  3.12749  0.18024     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     45   3.07897  2.58901  3.12749  0.18024     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01872  3.98768        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_eightyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:29:03 2013
+NSEQ  4
+EFFN  3.605469
+CKSUM 201117745
+STATS LOCAL MSV       -7.2058  0.71933
+STATS LOCAL VITERBI   -7.7450  0.71933
+STATS LOCAL FORWARD   -3.8320  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.77521  1.48324  1.16622  1.23063
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  0.00000        *
+      1   3.00689  3.67468  0.10808  3.58855      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      2   3.53238  0.11897  3.57752  2.90072      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      3   0.13100  3.46667  2.85777  3.37664      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      4   3.53238  0.11897  3.57752  2.90072      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      5   3.17670  2.65106  3.22145  0.16511      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      6   3.17670  2.65106  3.22145  0.16511      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      7   3.53238  0.11897  3.57752  2.90072      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      8   3.53238  0.11897  3.57752  2.90072      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      9   2.66454  1.57155  2.72875  0.41955      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     10   3.00689  3.67468  0.10808  3.58855     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     11   3.00689  3.67468  0.10808  3.58855     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     12   2.45592  0.95757  2.52731  0.79736     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     13   0.13100  3.46667  2.85777  3.37664     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     14   3.17670  2.65106  3.22145  0.16511     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     15   3.17670  2.65106  3.22145  0.16511     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     16   3.53238  0.11897  3.57752  2.90072     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     17   3.53238  0.11897  3.57752  2.90072     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     18   3.00689  3.67468  0.10808  3.58855     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     19   3.00689  3.67468  0.10808  3.58855     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     20   3.00689  3.67468  0.10808  3.58855     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     21   0.84065  2.56165  0.91063  2.41776     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     22   0.13100  3.46667  2.85777  3.37664     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     23   3.00689  3.67468  0.10808  3.58855     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     24   3.17670  2.65106  3.22145  0.16511     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     25   0.13100  3.46667  2.85777  3.37664     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     26   3.17670  2.65106  3.22145  0.16511     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     27   3.00689  3.67468  0.10808  3.58855     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     28   3.53238  0.11897  3.57752  2.90072     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     29   3.53238  0.11897  3.57752  2.90072     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     30   3.17670  2.65106  3.22145  0.16511     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     31   3.00689  3.67468  0.10808  3.58855     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     32   3.17670  2.65106  3.22145  0.16511     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     33   3.17670  2.65106  3.22145  0.16511     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     34   3.17670  2.65106  3.22145  0.16511     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     35   3.00689  3.67468  0.10808  3.58855     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     36   0.13100  3.46667  2.85777  3.37664     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     37   3.00689  3.67468  0.10808  3.58855     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     38   3.00689  3.67468  0.10808  3.58855     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     39   3.00689  3.67468  0.10808  3.58855     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     40   3.17670  2.65106  3.22145  0.16511     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     41   3.53238  0.11897  3.57752  2.90072     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     42   0.13100  3.46667  2.85777  3.37664     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     43   3.00689  3.67468  0.10808  3.58855     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     44   3.17670  2.65106  3.22145  0.16511     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     45   3.17670  2.65106  3.22145  0.16511     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01768  4.04401        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_eightyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:33:21 2013
+NSEQ  12
+EFFN  3.377930
+CKSUM 584611421
+STATS LOCAL MSV       -7.4883  0.71932
+STATS LOCAL VITERBI   -7.6298  0.71932
+STATS LOCAL FORWARD   -4.1379  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74512  1.13129  1.33907  1.42433
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  0.00000        *
+      1   3.45329  0.12783  3.50189  2.84367      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      2   2.95971  3.60551  0.11524  3.51203      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      3   3.45329  0.12783  3.50189  2.84367      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      4   3.45329  0.12783  3.50189  2.84367      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      5   3.45329  0.12783  3.50189  2.84367      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      6   3.10634  2.60641  3.15381  0.17585      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      7   3.45329  0.12783  3.50189  2.84367      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      8   3.10634  2.60641  3.15381  0.17585      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      9   2.95971  3.60551  0.11524  3.51203      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     10   2.95971  3.60551  0.11524  3.51203     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     11   3.10634  2.60641  3.15381  0.17585     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     12   3.10634  2.60641  3.15381  0.17585     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     13   0.13960  3.39779  2.81330  3.30112     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     14   3.10634  2.60641  3.15381  0.17585     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     15   3.45329  0.12783  3.50189  2.84367     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     16   3.45329  0.12783  3.50189  2.84367     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     17   3.45329  0.12783  3.50189  2.84367     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     18   0.29894  2.93706  1.92867  2.81290     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     19   2.95971  3.60551  0.11524  3.51203     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     20   0.13960  3.39779  2.81330  3.30112     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     21   2.95971  3.60551  0.11524  3.51203     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     22   2.95971  3.60551  0.11524  3.51203     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     23   2.95971  3.60551  0.11524  3.51203     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     24   3.45329  0.12783  3.50189  2.84367     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     25   0.13960  3.39779  2.81330  3.30112     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     26   3.45329  0.12783  3.50189  2.84367     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     27   3.10634  2.60641  3.15381  0.17585     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     28   3.45329  0.12783  3.50189  2.84367     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     29   3.10634  2.60641  3.15381  0.17585     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     30   3.10634  2.60641  3.15381  0.17585     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     31   2.95971  3.60551  0.11524  3.51203     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     32   3.10634  2.60641  3.15381  0.17585     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     33   3.10634  2.60641  3.15381  0.17585     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     34   3.10634  2.60641  3.15381  0.17585     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     35   2.95971  3.60551  0.11524  3.51203     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     36   0.13960  3.39779  2.81330  3.30112     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     37   0.13960  3.39779  2.81330  3.30112     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     38   2.95971  3.60551  0.11524  3.51203     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     39   3.45329  0.12783  3.50189  2.84367     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     40   3.45329  0.12783  3.50189  2.84367     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     41   3.45329  0.12783  3.50189  2.84367     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     42   3.45329  0.12783  3.50189  2.84367     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     43   2.95971  3.60551  0.11524  3.51203     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     44   2.26187  1.68897  0.49515  2.28615     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     45   0.13960  3.39779  2.81330  3.30112     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01842  4.00331        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_eightynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:29:52 2013
+NSEQ  5
+EFFN  3.227539
+CKSUM 3028426393
+STATS LOCAL MSV       -8.0930  0.71931
+STATS LOCAL VITERBI   -7.8302  0.71931
+STATS LOCAL FORWARD   -3.9466  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82157  1.31741  1.20163  1.31046
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  0.00000        *
+      1   3.39741  0.13455  3.44837  2.80294      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      2   0.14605  3.34931  2.78177  3.24806      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      3   3.39741  0.13455  3.44837  2.80294      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      4   3.05748  2.57532  3.10682  0.18378      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      5   3.39741  0.13455  3.44837  2.80294      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      6   3.05748  2.57532  3.10682  0.18378      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      7   3.39741  0.13455  3.44837  2.80294      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      8   3.39741  0.13455  3.44837  2.80294      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      9   2.92582  3.55626  0.12066  3.45768      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     10   2.92582  3.55626  0.12066  3.45768     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     11   3.05748  2.57532  3.10682  0.18378     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     12   3.05748  2.57532  3.10682  0.18378     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     13   3.05748  2.57532  3.10682  0.18378     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     14   3.05748  2.57532  3.10682  0.18378     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     15   3.39741  0.13455  3.44837  2.80294     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     16   3.39741  0.13455  3.44837  2.80294     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     17   2.92582  3.55626  0.12066  3.45768     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     18   2.92582  3.55626  0.12066  3.45768     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     19   2.92582  3.55626  0.12066  3.45768     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     20   0.14605  3.34931  2.78177  3.24806     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     21   2.92582  3.55626  0.12066  3.45768     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     22   0.14605  3.34931  2.78177  3.24806     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     23   2.92582  3.55626  0.12066  3.45768     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     24   3.05748  2.57532  3.10682  0.18378     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     25   0.14605  3.34931  2.78177  3.24806     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     26   3.05748  2.57532  3.10682  0.18378     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     27   2.92582  3.55626  0.12066  3.45768     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     28   3.39741  0.13455  3.44837  2.80294     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     29   3.39741  0.13455  3.44837  2.80294     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     30   3.05748  2.57532  3.10682  0.18378     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     31   2.92582  3.55626  0.12066  3.45768     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     32   3.05748  2.57532  3.10682  0.18378     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     33   3.05748  2.57532  3.10682  0.18378     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     34   3.05748  2.57532  3.10682  0.18378     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     35   2.92582  3.55626  0.12066  3.45768     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     36   0.14605  3.34931  2.78177  3.24806     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     37   2.92582  3.55626  0.12066  3.45768     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     38   2.92582  3.55626  0.12066  3.45768     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     39   2.92582  3.55626  0.12066  3.45768     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     40   3.05748  2.57532  3.10682  0.18378     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     41   3.39741  0.13455  3.44837  2.80294     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     42   0.14605  3.34931  2.78177  3.24806     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     43   2.92582  3.55626  0.12066  3.45768     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     44   3.39741  0.13455  3.44837  2.80294     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     45   3.39741  0.13455  3.44837  2.80294     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01895  3.97547        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_eightyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:29:31 2013
+NSEQ  3
+EFFN  3.000000
+CKSUM 3010397561
+STATS LOCAL MSV       -8.0548  0.72023
+STATS LOCAL VITERBI   -7.8892  0.72023
+STATS LOCAL FORWARD   -3.8604  0.72023
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81055  1.31924  1.20347  1.31324
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_eightysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:29:19 2013
+NSEQ  3
+EFFN  3.000000
+CKSUM 1065676441
+STATS LOCAL MSV       -7.9459  0.72043
+STATS LOCAL VITERBI   -7.8914  0.72043
+STATS LOCAL FORWARD   -3.7562  0.72043
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.80596  1.31067  1.14440  1.39582
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   3.30705  0.14631  3.36166  2.73626     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.43088  1.34923  2.50068  0.56112     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_eightythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:33:07 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 1917556334
+STATS LOCAL MSV       -7.3634  0.73055
+STATS LOCAL VITERBI   -8.4593  0.73055
+STATS LOCAL FORWARD   -3.4958  0.73055
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.42369  1.60106  1.53288  1.07417
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   1.89532  1.96405  1.06955  1.00436      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   1.01448  1.11006  1.95471  1.79419     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_eightytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:32:59 2013
+NSEQ  16
+EFFN  3.277344
+CKSUM 3906241751
+STATS LOCAL MSV       -8.2518  0.71933
+STATS LOCAL VITERBI   -7.9149  0.71933
+STATS LOCAL FORWARD   -3.9751  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55172  1.45115  1.31524  1.25385
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  0.00000        *
+      1   3.41625  0.13224  3.46642  2.81671      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      2   2.93730  3.57289  0.11880  3.47603      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      3   2.93730  3.57289  0.11880  3.47603      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      4   3.41625  0.13224  3.46642  2.81671      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      5   0.14384  3.36564  2.79241  3.26592      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      6   3.41625  0.13224  3.46642  2.81671      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      7   3.07387  2.58576  3.12259  0.18107      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      8   0.14384  3.36564  2.79241  3.26592      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      9   3.41625  0.13224  3.46642  2.81671      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     10   3.07387  2.58576  3.12259  0.18107     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     11   2.93730  3.57289  0.11880  3.47603     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     12   3.41625  0.13224  3.46642  2.81671     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     13   2.93730  3.57289  0.11880  3.47603     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     14   3.07387  2.58576  3.12259  0.18107     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     15   2.93730  3.57289  0.11880  3.47603     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     16   0.14384  3.36564  2.79241  3.26592     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     17   2.93730  3.57289  0.11880  3.47603     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     18   3.41625  0.13224  3.46642  2.81671     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     19   0.14384  3.36564  2.79241  3.26592     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     20   2.93730  3.57289  0.11880  3.47603     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     21   3.07387  2.58576  3.12259  0.18107     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     22   0.14384  3.36564  2.79241  3.26592     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     23   2.93730  3.57289  0.11880  3.47603     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     24   3.07387  2.58576  3.12259  0.18107     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     25   0.14384  3.36564  2.79241  3.26592     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     26   2.93730  3.57289  0.11880  3.47603     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     27   2.93730  3.57289  0.11880  3.47603     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     28   3.07387  2.58576  3.12259  0.18107     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     29   3.41625  0.13224  3.46642  2.81671     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     30   3.07387  2.58576  3.12259  0.18107     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     31   2.93730  3.57289  0.11880  3.47603     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     32   3.07387  2.58576  3.12259  0.18107     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     33   3.07387  2.58576  3.12259  0.18107     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     34   3.07387  2.58576  3.12259  0.18107     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     35   3.41625  0.13224  3.46642  2.81671     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     36   0.14384  3.36564  2.79241  3.26592     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     37   2.93730  3.57289  0.11880  3.47603     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     38   3.07387  2.58576  3.12259  0.18107     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     39   3.41625  0.13224  3.46642  2.81671     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     40   3.07387  2.58576  3.12259  0.18107     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     41   3.41625  0.13224  3.46642  2.81671     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     42   0.14384  3.36564  2.79241  3.26592     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     43   0.14384  3.36564  2.79241  3.26592     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     44   3.07387  2.58576  3.12259  0.18107     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     45   3.07387  2.58576  3.12259  0.18107     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01877  3.98478        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_ninety_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:30:08 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 3491520532
+STATS LOCAL MSV       -7.1883  0.72975
+STATS LOCAL VITERBI   -8.2289  0.72975
+STATS LOCAL FORWARD   -3.5844  0.72975
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.48574  1.54128  1.36625  1.18909
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.15554  1.00938  2.23102  0.88601     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   1.03732  1.95876  1.96551  1.00928     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_ninetyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:31:54 2013
+NSEQ  5
+EFFN  3.325195
+CKSUM 3444520400
+STATS LOCAL MSV       -8.0897  0.71934
+STATS LOCAL VITERBI   -7.7396  0.71934
+STATS LOCAL FORWARD   -3.9429  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54813  1.47281  1.25061  1.30289
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  0.00000        *
+      1   2.94809  3.58857  0.11707  3.49333      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      2   3.43404  0.13010  3.48346  2.82967      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      3   0.14179  3.38107  2.80245  3.28281      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      4   3.43404  0.13010  3.48346  2.82967      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      5   3.08942  2.59566  3.13755  0.17855      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      6   3.43404  0.13010  3.48346  2.82967      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      7   2.74634  0.36791  2.81422  1.69440      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      8   3.08942  2.59566  3.13755  0.17855      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      9   3.08942  2.59566  3.13755  0.17855      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     10   2.94809  3.58857  0.11707  3.49333     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     11   2.94809  3.58857  0.11707  3.49333     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     12   3.08942  2.59566  3.13755  0.17855     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     13   0.14179  3.38107  2.80245  3.28281     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     14   3.08942  2.59566  3.13755  0.17855     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     15   3.08942  2.59566  3.13755  0.17855     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     16   3.43404  0.13010  3.48346  2.82967     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     17   3.43404  0.13010  3.48346  2.82967     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     18   2.94809  3.58857  0.11707  3.49333     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     19   0.14179  3.38107  2.80245  3.28281     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     20   2.94809  3.58857  0.11707  3.49333     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     21   2.94809  3.58857  0.11707  3.49333     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     22   0.14179  3.38107  2.80245  3.28281     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     23   2.94809  3.58857  0.11707  3.49333     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     24   3.08942  2.59566  3.13755  0.17855     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     25   0.14179  3.38107  2.80245  3.28281     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     26   3.43404  0.13010  3.48346  2.82967     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     27   0.14179  3.38107  2.80245  3.28281     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     28   3.43404  0.13010  3.48346  2.82967     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     29   0.14179  3.38107  2.80245  3.28281     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     30   3.08942  2.59566  3.13755  0.17855     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     31   2.94809  3.58857  0.11707  3.49333     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     32   3.43404  0.13010  3.48346  2.82967     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     33   3.08942  2.59566  3.13755  0.17855     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     34   3.08942  2.59566  3.13755  0.17855     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     35   2.94809  3.58857  0.11707  3.49333     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     36   0.14179  3.38107  2.80245  3.28281     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     37   2.94809  3.58857  0.11707  3.49333     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     38   2.94809  3.58857  0.11707  3.49333     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     39   2.94809  3.58857  0.11707  3.49333     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     40   3.08942  2.59566  3.13755  0.17855     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     41   3.43404  0.13010  3.48346  2.82967     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     42   0.14179  3.38107  2.80245  3.28281     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     43   2.94809  3.58857  0.11707  3.49333     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     44   3.08942  2.59566  3.13755  0.17855     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     45   3.08942  2.59566  3.13755  0.17855     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01860  3.99364        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_ninetyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:31:07 2013
+NSEQ  4
+EFFN  3.378906
+CKSUM 1392573870
+STATS LOCAL MSV       -7.2841  0.71933
+STATS LOCAL VITERBI   -7.7292  0.71933
+STATS LOCAL FORWARD   -3.8558  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.80391  1.60400  1.15260  1.14432
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  0.00000        *
+      1   2.95993  3.60582  0.11520  3.51237      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      2   3.45365  0.12778  3.50223  2.84393      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      3   0.13956  3.39810  2.81350  3.30145      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      4   3.45365  0.12778  3.50223  2.84393      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      5   3.10665  2.60661  3.15411  0.17580      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      6   3.10665  2.60661  3.15411  0.17580      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      7   3.45365  0.12778  3.50223  2.84393      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      8   3.10665  2.60661  3.15411  0.17580      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+      9   3.10665  2.60661  3.15411  0.17580      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     10   2.95993  3.60582  0.11520  3.51237     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     11   2.95993  3.60582  0.11520  3.51237     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     12   3.10665  2.60661  3.15411  0.17580     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     13   0.13956  3.39810  2.81350  3.30145     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     14   3.10665  2.60661  3.15411  0.17580     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     15   3.10665  2.60661  3.15411  0.17580     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     16   3.45365  0.12778  3.50223  2.84393     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     17   3.45365  0.12778  3.50223  2.84393     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     18   2.95993  3.60582  0.11520  3.51237     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     19   0.13956  3.39810  2.81350  3.30145     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     20   2.95993  3.60582  0.11520  3.51237     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     21   2.95993  3.60582  0.11520  3.51237     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     22   0.13956  3.39810  2.81350  3.30145     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     23   2.95993  3.60582  0.11520  3.51237     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     24   3.10665  2.60661  3.15411  0.17580     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     25   0.13956  3.39810  2.81350  3.30145     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     26   3.10665  2.60661  3.15411  0.17580     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     27   1.65972  2.83520  0.37998  2.69972     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     28   3.45365  0.12778  3.50223  2.84393     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     29   3.10665  2.60661  3.15411  0.17580     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     30   3.10665  2.60661  3.15411  0.17580     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     31   2.95993  3.60582  0.11520  3.51237     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     32   3.45365  0.12778  3.50223  2.84393     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     33   3.10665  2.60661  3.15411  0.17580     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     34   3.10665  2.60661  3.15411  0.17580     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     35   2.95993  3.60582  0.11520  3.51237     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     36   0.13956  3.39810  2.81350  3.30145     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     37   2.95993  3.60582  0.11520  3.51237     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     38   2.95993  3.60582  0.11520  3.51237     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     39   2.95993  3.60582  0.11520  3.51237     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     40   3.10665  2.60661  3.15411  0.17580     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     41   3.10665  2.60661  3.15411  0.17580     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     42   2.95993  3.60582  0.11520  3.51237     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     43   2.95993  3.60582  0.11520  3.51237     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     44   3.10665  2.60661  3.15411  0.17580     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02158  4.02158  1.46634  0.26236  1.09861  0.40547
+     45   3.45365  0.12778  3.50223  2.84393     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01842  4.00349        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_ninetyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:30:59 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 2850641770
+STATS LOCAL MSV       -7.2796  0.72853
+STATS LOCAL VITERBI   -8.3400  0.72853
+STATS LOCAL FORWARD   -3.2036  0.72853
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.58101  1.49322  1.20911  1.30519
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.15554  1.00938  2.23102  0.88601     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_ninetynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:32:03 2013
+NSEQ  3
+EFFN  3.000000
+CKSUM 2665187683
+STATS LOCAL MSV       -7.9238  0.72047
+STATS LOCAL VITERBI   -7.7225  0.72047
+STATS LOCAL FORWARD   -3.8204  0.72047
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54102  1.69362  1.19338  1.20801
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   0.15719  3.27118  2.73043  3.16274     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.86982  3.47591  0.13017  3.36931     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_ninetyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:30:16 2013
+NSEQ  5
+EFFN  3.256836
+CKSUM 771752251
+STATS LOCAL MSV       -8.0885  0.71933
+STATS LOCAL VITERBI   -7.8092  0.71933
+STATS LOCAL FORWARD   -3.7578  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92869  1.45006  1.14308  1.19974
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  0.00000        *
+      1   2.93260  3.56608  0.11956  3.46852      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+      2   3.40853  0.13318  3.45902  2.81107      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+      3   0.14474  3.35895  2.78806  3.25860      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+      4   3.40853  0.13318  3.45902  2.81107      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+      5   3.06715  2.58148  3.11612  0.18218      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+      6   3.40853  0.13318  3.45902  2.81107      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+      7   3.06715  2.58148  3.11612  0.18218      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+      8   3.40853  0.13318  3.45902  2.81107      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+      9   3.06715  2.58148  3.11612  0.18218      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     10   2.93260  3.56608  0.11956  3.46852     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     11   2.93260  3.56608  0.11956  3.46852     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     12   3.06715  2.58148  3.11612  0.18218     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     13   0.14474  3.35895  2.78806  3.25860     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     14   3.06715  2.58148  3.11612  0.18218     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     15   3.06715  2.58148  3.11612  0.18218     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     16   3.40853  0.13318  3.45902  2.81107     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     17   3.40853  0.13318  3.45902  2.81107     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     18   2.93260  3.56608  0.11956  3.46852     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     19   2.93260  3.56608  0.11956  3.46852     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     20   2.93260  3.56608  0.11956  3.46852     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     21   2.93260  3.56608  0.11956  3.46852     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     22   0.14474  3.35895  2.78806  3.25860     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     23   2.93260  3.56608  0.11956  3.46852     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     24   3.06715  2.58148  3.11612  0.18218     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     25   0.14474  3.35895  2.78806  3.25860     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     26   3.06715  2.58148  3.11612  0.18218     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     27   2.93260  3.56608  0.11956  3.46852     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     28   3.40853  0.13318  3.45902  2.81107     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     29   3.40853  0.13318  3.45902  2.81107     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     30   3.06715  2.58148  3.11612  0.18218     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     31   2.93260  3.56608  0.11956  3.46852     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     32   3.06715  2.58148  3.11612  0.18218     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     33   3.06715  2.58148  3.11612  0.18218     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     34   3.06715  2.58148  3.11612  0.18218     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     35   2.93260  3.56608  0.11956  3.46852     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     36   0.14474  3.35895  2.78806  3.25860     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     37   2.93260  3.56608  0.11956  3.46852     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     38   2.93260  3.56608  0.11956  3.46852     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     39   2.93260  3.56608  0.11956  3.46852     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     40   3.06715  2.58148  3.11612  0.18218     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     41   3.40853  0.13318  3.45902  2.81107     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     42   2.93260  3.56608  0.11956  3.46852     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     43   3.40853  0.13318  3.45902  2.81107     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     44   3.06715  2.58148  3.11612  0.18218     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99945  3.99945  1.46634  0.26236  1.09861  0.40547
+     45   3.06715  2.58148  3.11612  0.18218     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01884  3.98096        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_ninetyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:31:35 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 1000076738
+STATS LOCAL MSV       -7.4377  0.72839
+STATS LOCAL VITERBI   -8.3892  0.72839
+STATS LOCAL FORWARD   -3.4432  0.72839
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73298  1.57234  1.21276  1.14474
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_ninetysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:31:15 2013
+NSEQ  6
+EFFN  3.377930
+CKSUM 2625151402
+STATS LOCAL MSV       -7.2311  0.71932
+STATS LOCAL VITERBI   -7.6415  0.71932
+STATS LOCAL FORWARD   -4.0535  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62775  1.71421  1.19038  1.14126
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  0.00000        *
+      1   2.95971  3.60551  0.11524  3.51203      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      2   3.45329  0.12783  3.50189  2.84367      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      3   0.13960  3.39779  2.81330  3.30112      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      4   3.45329  0.12783  3.50189  2.84367      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      5   3.10634  2.60641  3.15381  0.17585      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      6   3.45329  0.12783  3.50189  2.84367      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      7   3.10634  2.60641  3.15381  0.17585      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      8   3.10634  2.60641  3.15381  0.17585      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      9   3.10634  2.60641  3.15381  0.17585      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     10   2.95971  3.60551  0.11524  3.51203     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     11   2.95971  3.60551  0.11524  3.51203     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     12   3.10634  2.60641  3.15381  0.17585     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     13   0.13960  3.39779  2.81330  3.30112     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     14   3.10634  2.60641  3.15381  0.17585     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     15   3.10634  2.60641  3.15381  0.17585     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     16   3.45329  0.12783  3.50189  2.84367     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     17   3.45329  0.12783  3.50189  2.84367     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     18   2.95971  3.60551  0.11524  3.51203     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     19   0.13960  3.39779  2.81330  3.30112     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     20   0.13960  3.39779  2.81330  3.30112     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     21   2.95971  3.60551  0.11524  3.51203     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     22   0.13960  3.39779  2.81330  3.30112     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     23   2.95971  3.60551  0.11524  3.51203     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     24   3.10634  2.60641  3.15381  0.17585     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     25   0.13960  3.39779  2.81330  3.30112     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     26   3.10634  2.60641  3.15381  0.17585     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     27   2.95971  3.60551  0.11524  3.51203     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     28   3.45329  0.12783  3.50189  2.84367     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     29   3.10634  2.60641  3.15381  0.17585     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     30   3.10634  2.60641  3.15381  0.17585     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     31   2.95971  3.60551  0.11524  3.51203     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     32   2.84854  0.31627  2.91428  1.83906     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     33   3.10634  2.60641  3.15381  0.17585     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     34   3.10634  2.60641  3.15381  0.17585     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     35   2.95971  3.60551  0.11524  3.51203     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     36   0.13960  3.39779  2.81330  3.30112     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     37   2.95971  3.60551  0.11524  3.51203     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     38   2.95971  3.60551  0.11524  3.51203     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     39   2.95971  3.60551  0.11524  3.51203     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     40   3.10634  2.60641  3.15381  0.17585     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     41   3.10634  2.60641  3.15381  0.17585     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     42   2.95971  3.60551  0.11524  3.51203     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     43   2.95971  3.60551  0.11524  3.51203     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     44   0.13960  3.39779  2.81330  3.30112     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     45   3.10634  2.60641  3.15381  0.17585     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01842  4.00331        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_ninetythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:30:38 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 2477419687
+STATS LOCAL MSV       -7.4816  0.72797
+STATS LOCAL VITERBI   -8.2703  0.72797
+STATS LOCAL FORWARD   -3.1822  0.72797
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.65669  1.51744  1.16370  1.28148
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_ninetytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:30:25 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 806446548
+STATS LOCAL MSV       -7.3080  0.72792
+STATS LOCAL VITERBI   -8.2802  0.72792
+STATS LOCAL FORWARD   -3.2888  0.72792
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66046  1.39496  1.21475  1.32682
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_Fungi_Ge_58S_end_onehundred_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:32:15 2013
+NSEQ  8
+EFFN  3.300781
+CKSUM 2315744860
+STATS LOCAL MSV       -8.0030  0.71931
+STATS LOCAL VITERBI   -7.8239  0.71931
+STATS LOCAL FORWARD   -4.0467  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54874  1.37867  1.31735  1.31779
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  0.00000        *
+      1   3.42500  0.13118  3.47480  2.82309      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      2   0.14283  3.37323  2.79735  3.27422      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      3   0.14283  3.37323  2.79735  3.27422      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      4   0.14283  3.37323  2.79735  3.27422      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      5   3.08151  2.59063  3.12994  0.17982      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      6   3.08151  2.59063  3.12994  0.17982      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      7   2.94261  3.58061  0.11794  3.48454      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      8   3.42500  0.13118  3.47480  2.82309      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      9   2.94261  3.58061  0.11794  3.48454      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     10   3.42500  0.13118  3.47480  2.82309     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     11   3.42500  0.13118  3.47480  2.82309     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     12   3.08151  2.59063  3.12994  0.17982     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     13   3.08151  2.59063  3.12994  0.17982     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     14   3.42500  0.13118  3.47480  2.82309     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     15   3.08151  2.59063  3.12994  0.17982     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     16   3.08151  2.59063  3.12994  0.17982     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     17   2.78821  1.95158  2.84729  0.30325     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     18   3.42500  0.13118  3.47480  2.82309     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     19   2.94261  3.58061  0.11794  3.48454     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     20   2.94261  3.58061  0.11794  3.48454     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     21   0.14283  3.37323  2.79735  3.27422     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     22   0.14283  3.37323  2.79735  3.27422     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     23   2.94261  3.58061  0.11794  3.48454     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     24   2.94261  3.58061  0.11794  3.48454     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     25   3.42500  0.13118  3.47480  2.82309     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     26   0.14283  3.37323  2.79735  3.27422     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     27   3.08151  2.59063  3.12994  0.17982     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     28   2.94261  3.58061  0.11794  3.48454     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     29   3.08151  2.59063  3.12994  0.17982     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     30   3.42500  0.13118  3.47480  2.82309     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     31   3.08151  2.59063  3.12994  0.17982     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     32   2.94261  3.58061  0.11794  3.48454     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     33   3.08151  2.59063  3.12994  0.17982     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     34   3.08151  2.59063  3.12994  0.17982     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     35   3.08151  2.59063  3.12994  0.17982     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     36   2.94261  3.58061  0.11794  3.48454     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     37   0.14283  3.37323  2.79735  3.27422     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     38   2.94261  3.58061  0.11794  3.48454     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     39   2.94261  3.58061  0.11794  3.48454     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     40   2.94261  3.58061  0.11794  3.48454     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     41   3.42500  0.13118  3.47480  2.82309     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     42   0.14283  3.37323  2.79735  3.27422     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     43   3.42500  0.13118  3.47480  2.82309     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     44   3.42500  0.13118  3.47480  2.82309     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     45   0.14283  3.37323  2.79735  3.27422     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01869  3.98913        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:10:12 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 31462692
+STATS LOCAL MSV       -7.5580  0.72731
+STATS LOCAL VITERBI   -8.1206  0.72731
+STATS LOCAL FORWARD   -3.3782  0.72731
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.18772  1.54774  1.20275  1.70380
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:10:33 2013
+NSEQ  3
+EFFN  3.000000
+CKSUM 1014321630
+STATS LOCAL MSV       -7.8858  0.71998
+STATS LOCAL VITERBI   -7.9612  0.71998
+STATS LOCAL FORWARD   -3.6592  0.71998
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33401  1.44420  1.03500  1.92814
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.43223  0.62271  2.50508  1.22417     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.86982  3.47591  0.13017  3.36931     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   3.30705  0.14631  3.36166  2.73626     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.86982  3.47591  0.13017  3.36931     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:10:42 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 1686600363
+STATS LOCAL MSV       -7.6183  0.72714
+STATS LOCAL VITERBI   -8.3639  0.72714
+STATS LOCAL FORWARD   -3.2499  0.72714
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28641  1.54950  1.11002  1.70467
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevend_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:10:49 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 60168800
+STATS LOCAL MSV       -7.5143  0.72715
+STATS LOCAL VITERBI   -8.3581  0.72715
+STATS LOCAL FORWARD   -3.1049  0.72715
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45607  1.47943  1.06949  1.63016
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevene_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:10:56 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 3015714073
+STATS LOCAL MSV       -7.7287  0.72707
+STATS LOCAL VITERBI   -8.3168  0.72707
+STATS LOCAL FORWARD   -3.2920  0.72707
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28476  1.62231  1.06481  1.70899
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevenf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:11:03 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 1098926546
+STATS LOCAL MSV       -7.5571  0.72714
+STATS LOCAL VITERBI   -8.2690  0.72714
+STATS LOCAL FORWARD   -3.2569  0.72714
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28644  1.54944  1.10999  1.70475
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_eleveng_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:11:09 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 1408607106
+STATS LOCAL MSV       -7.6707  0.72693
+STATS LOCAL VITERBI   -8.2626  0.72693
+STATS LOCAL FORWARD   -3.1913  0.72693
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23718  1.49217  1.11013  1.86177
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevenh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:11:16 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 1657622204
+STATS LOCAL MSV       -7.5324  0.72760
+STATS LOCAL VITERBI   -8.3427  0.72760
+STATS LOCAL FORWARD   -3.1835  0.72760
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23657  1.53832  1.25535  1.56110
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_eleveni_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:11:22 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 3142056612
+STATS LOCAL MSV       -7.3816  0.72740
+STATS LOCAL VITERBI   -8.3409  0.72740
+STATS LOCAL FORWARD   -3.0307  0.72740
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28805  1.47603  1.20591  1.62847
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevenj_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:11:30 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 3827499254
+STATS LOCAL MSV       -7.6762  0.72829
+STATS LOCAL VITERBI   -8.2066  0.72829
+STATS LOCAL FORWARD   -3.2423  0.72829
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28052  1.51428  1.23656  1.55232
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   1.88179  1.10717  1.04597  1.79675      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.81865  0.23582  2.88868  2.35662     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevenk_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:11:40 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 1084307423
+STATS LOCAL MSV       -7.6519  0.72712
+STATS LOCAL VITERBI   -8.2711  0.72712
+STATS LOCAL FORWARD   -3.2438  0.72712
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39827  1.42033  1.11293  1.69967
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.81865  0.23582  2.88868  2.35662     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevenl_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:11:48 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 3789997240
+STATS LOCAL MSV       -7.4936  0.72712
+STATS LOCAL VITERBI   -8.3381  0.72712
+STATS LOCAL FORWARD   -3.4595  0.72712
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39690  1.41715  1.11632  1.69962
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevenm_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:11:55 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 1058382530
+STATS LOCAL MSV       -7.4899  0.72691
+STATS LOCAL VITERBI   -8.4598  0.72691
+STATS LOCAL FORWARD   -3.2071  0.72691
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34292  1.36561  1.11630  1.85660
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevenn_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:12:01 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 1792878469
+STATS LOCAL MSV       -7.5720  0.72700
+STATS LOCAL VITERBI   -8.3413  0.72700
+STATS LOCAL FORWARD   -3.2544  0.72700
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23848  1.42622  1.15763  1.85962
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_eleveno_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:12:10 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 2962605744
+STATS LOCAL MSV       -7.5749  0.72738
+STATS LOCAL VITERBI   -8.2429  0.72738
+STATS LOCAL FORWARD   -3.3452  0.72738
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45286  1.61049  1.06628  1.50498
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevenp_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:12:28 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 1128946882
+STATS LOCAL MSV       -7.5047  0.72766
+STATS LOCAL VITERBI   -8.1942  0.72766
+STATS LOCAL FORWARD   -3.3423  0.72766
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34425  1.34950  1.31725  1.55106
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevenq_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:12:36 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 2840426178
+STATS LOCAL MSV       -7.6350  0.72784
+STATS LOCAL VITERBI   -8.3814  0.72784
+STATS LOCAL FORWARD   -3.1763  0.72784
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40213  1.29039  1.37714  1.48517
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevenr_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:12:43 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 2656723597
+STATS LOCAL MSV       -7.3075  0.72802
+STATS LOCAL VITERBI   -8.3625  0.72802
+STATS LOCAL FORWARD   -3.5651  0.72802
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.51986  1.45623  1.26505  1.32456
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevens_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:12:49 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 1392137913
+STATS LOCAL MSV       -7.4204  0.72747
+STATS LOCAL VITERBI   -8.3081  0.72747
+STATS LOCAL FORWARD   -3.4237  0.72747
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28872  1.41280  1.26134  1.62129
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevent_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:12:56 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 3547404043
+STATS LOCAL MSV       -7.5674  0.72762
+STATS LOCAL VITERBI   -8.3873  0.72762
+STATS LOCAL FORWARD   -3.4310  0.72762
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33953  1.53476  1.20703  1.49862
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevenu_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:13:03 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 1867566485
+STATS LOCAL MSV       -7.5904  0.72727
+STATS LOCAL VITERBI   -8.2946  0.72727
+STATS LOCAL FORWARD   -3.2153  0.72727
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40149  1.30142  1.21373  1.68990
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_Fungi_Ge_SSU_end_elevenv_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 15 11:13:09 2013
+NSEQ  2
+EFFN  2.000000
+CKSUM 3809888057
+STATS LOCAL MSV       -7.4380  0.72782
+STATS LOCAL VITERBI   -8.2948  0.72782
+STATS LOCAL FORWARD   -3.4535  0.72782
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.58945  1.39756  1.21349  1.37990
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/F.hmm.h3f
Binary file ITSx_db/HMMs/F.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/F.hmm.h3i
Binary file ITSx_db/HMMs/F.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/F.hmm.h3m
Binary file ITSx_db/HMMs/F.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/F.hmm.h3p
Binary file ITSx_db/HMMs/F.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/G.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/G.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,8370 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:06:57 2012
+NSEQ  8
+EFFN  3.128906
+CKSUM 1519682346
+STATS LOCAL MSV       -8.1109  0.71934
+STATS LOCAL VITERBI   -7.7889  0.71934
+STATS LOCAL FORWARD   -3.6308  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.06483  0.95712  1.26884  1.57019
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  0.00000        *
+      1   3.35912  0.13939  3.41165  2.77481      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      2   2.90228  3.52232  0.12458  3.42031      2 - -
+          1.38629  1.38629  1.38629  1.38629
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+     42   3.02437  2.55419  3.07496  0.18939     42 - -
+          1.38629  1.38629  1.38629  1.38629
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+     43   2.90228  3.52232  0.12458  3.42031     43 - -
+          1.38629  1.38629  1.38629  1.38629
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+     44   3.02437  2.55419  3.07496  0.18939     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     45   3.02437  2.55419  3.07496  0.18939     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01931  3.95679        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_elevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:08:11 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3760142231
+STATS LOCAL MSV       -7.7134  0.72708
+STATS LOCAL VITERBI   -8.1835  0.72708
+STATS LOCAL FORWARD   -2.9945  0.72708
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66783  1.20179  1.12165  1.68770
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
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+      2   2.81865  0.23582  2.88868  2.35662      2 - -
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+      3   2.53331  3.02441  0.20344  2.88069      3 - -
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+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_elevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:08:17 2012
+NSEQ  4
+EFFN  3.167969
+CKSUM 1059924513
+STATS LOCAL MSV       -8.1569  0.71931
+STATS LOCAL VITERBI   -7.6314  0.71931
+STATS LOCAL FORWARD   -3.5156  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71647  1.25486  0.99125  1.80746
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  0.00000        *
+      1   2.91173  3.53592  0.12299  3.43528      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      2   3.37444  0.13743  3.42635  2.78609      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      3   2.91173  3.53592  0.12299  3.43528      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      4   3.37444  0.13743  3.42635  2.78609      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      5   3.37444  0.13743  3.42635  2.78609      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      6   3.37444  0.13743  3.42635  2.78609      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      7   2.91173  3.53592  0.12299  3.43528      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      8   0.14880  3.32943  2.76878  3.22633      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      9   2.91173  3.53592  0.12299  3.43528      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     10   2.91173  3.53592  0.12299  3.43528     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     11   3.03758  2.56263  3.08768  0.18713     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     12   2.37754  0.96254  2.45003  0.82323     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     13   3.03758  2.56263  3.08768  0.18713     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     14   0.14880  3.32943  2.76878  3.22633     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     15   2.91173  3.53592  0.12299  3.43528     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     16   2.91173  3.53592  0.12299  3.43528     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     17   3.37444  0.13743  3.42635  2.78609     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     18   3.37444  0.13743  3.42635  2.78609     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     19   0.14880  3.32943  2.76878  3.22633     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     20   0.14880  3.32943  2.76878  3.22633     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     21   2.91173  3.53592  0.12299  3.43528     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     22   2.91173  3.53592  0.12299  3.43528     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     23   2.91173  3.53592  0.12299  3.43528     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     24   3.37444  0.13743  3.42635  2.78609     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     25   0.14880  3.32943  2.76878  3.22633     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     26   3.03758  2.56263  3.08768  0.18713     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     27   2.91173  3.53592  0.12299  3.43528     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     28   2.91173  3.53592  0.12299  3.43528     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     29   3.37444  0.13743  3.42635  2.78609     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     30   3.03758  2.56263  3.08768  0.18713     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     31   2.91173  3.53592  0.12299  3.43528     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     32   2.91173  3.53592  0.12299  3.43528     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     33   3.37444  0.13743  3.42635  2.78609     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     34   3.03758  2.56263  3.08768  0.18713     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     35   3.37444  0.13743  3.42635  2.78609     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     36   0.14880  3.32943  2.76878  3.22633     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     37   2.91173  3.53592  0.12299  3.43528     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     38   3.37444  0.13743  3.42635  2.78609     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     39   2.91173  3.53592  0.12299  3.43528     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     40   3.03758  2.56263  3.08768  0.18713     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     41   3.37444  0.13743  3.42635  2.78609     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     42   2.91173  3.53592  0.12299  3.43528     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     43   0.14880  3.32943  2.76878  3.22633     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     44   3.37444  0.13743  3.42635  2.78609     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     45   2.91173  3.53592  0.12299  3.43528     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01917  3.96423        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_fifteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:09:22 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3206328775
+STATS LOCAL MSV       -7.4469  0.72804
+STATS LOCAL VITERBI   -8.2249  0.72804
+STATS LOCAL FORWARD   -3.6506  0.72804
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66019  1.45155  1.21279  1.27898
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:06:30 2012
+NSEQ  6
+EFFN  3.219727
+CKSUM 399550701
+STATS LOCAL MSV       -8.3017  0.71932
+STATS LOCAL VITERBI   -7.6964  0.71932
+STATS LOCAL FORWARD   -3.8371  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66847  1.15405  1.18562  1.65782
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  0.00000        *
+      1   2.92399  3.55362  0.12096  3.45477      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      2   3.39443  0.13492  3.44551  2.80075      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      3   2.92399  3.55362  0.12096  3.45477      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      4   2.92399  3.55362  0.12096  3.45477      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      5   3.05488  2.57367  3.10432  0.18421      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      6   3.39443  0.13492  3.44551  2.80075      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      7   2.92399  3.55362  0.12096  3.45477      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      8   0.14640  3.34673  2.78009  3.24524      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      9   2.92399  3.55362  0.12096  3.45477      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     10   2.92399  3.55362  0.12096  3.45477     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     11   3.39443  0.13492  3.44551  2.80075     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     12   3.05488  2.57367  3.10432  0.18421     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     13   3.05488  2.57367  3.10432  0.18421     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     14   3.39443  0.13492  3.44551  2.80075     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     15   2.92399  3.55362  0.12096  3.45477     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     16   2.92399  3.55362  0.12096  3.45477     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     17   3.39443  0.13492  3.44551  2.80075     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     18   3.39443  0.13492  3.44551  2.80075     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     19   0.52608  2.60866  1.38344  2.46821     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     20   0.14640  3.34673  2.78009  3.24524     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     21   2.92399  3.55362  0.12096  3.45477     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     22   0.14640  3.34673  2.78009  3.24524     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     23   3.39443  0.13492  3.44551  2.80075     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     24   3.39443  0.13492  3.44551  2.80075     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     25   0.14640  3.34673  2.78009  3.24524     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     26   3.05488  2.57367  3.10432  0.18421     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     27   2.92399  3.55362  0.12096  3.45477     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     28   3.39443  0.13492  3.44551  2.80075     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     29   3.39443  0.13492  3.44551  2.80075     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     30   3.05488  2.57367  3.10432  0.18421     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     31   2.92399  3.55362  0.12096  3.45477     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     32   3.39443  0.13492  3.44551  2.80075     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     33   3.39443  0.13492  3.44551  2.80075     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     34   3.05488  2.57367  3.10432  0.18421     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     35   3.39443  0.13492  3.44551  2.80075     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     36   0.14640  3.34673  2.78009  3.24524     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     37   2.92399  3.55362  0.12096  3.45477     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     38   3.39443  0.13492  3.44551  2.80075     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     39   2.92399  3.55362  0.12096  3.45477     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     40   3.05488  2.57367  3.10432  0.18421     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     41   3.39443  0.13492  3.44551  2.80075     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     42   2.92399  3.55362  0.12096  3.45477     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     43   3.05488  2.57367  3.10432  0.18421     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     44   0.14640  3.34673  2.78009  3.24524     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     45   0.14640  3.34673  2.78009  3.24524     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01898  3.97401        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_foura_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:05:16 2012
+NSEQ  52
+EFFN  3.449951
+CKSUM 881486621
+STATS LOCAL MSV       -7.1698  0.71931
+STATS LOCAL VITERBI   -7.5850  0.71931
+STATS LOCAL FORWARD   -3.9589  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.85538  1.20465  1.09209  1.56880
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  0.00000        *
+      1   2.97515  3.62808  0.11284  3.53697      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+      2   3.47902  0.12486  3.52651  2.86230      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+      3   2.97515  3.62808  0.11284  3.53697      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+      4   3.25787  0.15953  3.10244  2.74811      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+      5   3.12906  2.62084  3.17566  0.17229      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+      6   3.30543  0.16321  3.35847  2.53684      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+      7   2.97515  3.62808  0.11284  3.53697      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+      8   0.26092  2.40692  2.57632  2.75649      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+      9   2.97515  3.62808  0.11284  3.53697      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     10   2.97515  3.62808  0.11284  3.53697     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     11   3.47902  0.12486  3.52651  2.86230     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     12   2.96985  2.24779  3.02247  0.23020     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     13   3.12906  2.62084  3.17566  0.17229     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     14   3.47902  0.12486  3.52651  2.86230     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     15   2.97515  3.62808  0.11284  3.53697     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     16   2.97515  3.62808  0.11284  3.53697     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     17   3.47902  0.12486  3.52651  2.86230     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     18   3.26534  0.17321  3.31968  2.46875     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     19   0.25046  3.05864  2.10513  2.94170     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     20   0.13674  3.42016  2.82777  3.32563     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     21   2.97515  3.62808  0.11284  3.53697     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     22   0.17981  3.26289  2.47875  3.15944     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     23   2.97515  3.62808  0.11284  3.53697     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     24   3.47902  0.12486  3.52651  2.86230     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     25   0.13674  3.42016  2.82777  3.32563     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     26   3.12906  2.62084  3.17566  0.17229     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     27   2.97515  3.62808  0.11284  3.53697     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     28   3.12906  2.62084  3.17566  0.17229     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     29   3.27834  0.16991  3.33226  2.49063     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     30   3.12906  2.62084  3.17566  0.17229     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     31   2.97515  3.62808  0.11284  3.53697     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     32   3.47902  0.12486  3.52651  2.86230     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     33   3.47902  0.12486  3.52651  2.86230     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     34   3.12906  2.62084  3.17566  0.17229     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     35   3.47902  0.12486  3.52651  2.86230     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     36   0.13674  3.42016  2.82777  3.32563     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     37   2.97515  3.62808  0.11284  3.53697     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     38   3.47902  0.12486  3.52651  2.86230     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     39   2.97515  3.62808  0.11284  3.53697     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     40   3.12906  2.62084  3.17566  0.17229     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     41   3.47902  0.12486  3.52651  2.86230     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     42   2.97515  3.62808  0.11284  3.53697     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     43   2.75118  2.78059  0.18930  3.06608     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     44   2.57620  2.90019  0.27021  2.24711     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03604  4.03423  4.03423  1.46634  0.26236  1.09861  0.40547
+     45   3.12906  2.62084  3.17566  0.17229     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01818  4.01637        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_fourb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:05:29 2012
+NSEQ  17
+EFFN  3.448975
+CKSUM 2381245520
+STATS LOCAL MSV       -7.2708  0.71933
+STATS LOCAL VITERBI   -7.6530  0.71933
+STATS LOCAL FORWARD   -3.8073  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.03392  1.10636  1.05205  1.66496
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  0.00000        *
+      1   2.97495  3.62778  0.11287  3.53664      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+      2   3.47868  0.12490  3.52618  2.86205      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+      3   2.97495  3.62778  0.11287  3.53664      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+      4   3.47868  0.12490  3.52618  2.86205      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+      5   3.47868  0.12490  3.52618  2.86205      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+      6   3.47868  0.12490  3.52618  2.86205      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+      7   1.76223  2.91429  0.33941  2.78215      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+      8   0.13678  3.41986  2.82758  3.32530      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+      9   2.97495  3.62778  0.11287  3.53664      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     10   2.97495  3.62778  0.11287  3.53664     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     11   3.47868  0.12490  3.52618  2.86205     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     12   2.85079  2.00388  2.90799  0.28395     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     13   2.83058  1.96405  2.88853  0.29427     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     14   3.47868  0.12490  3.52618  2.86205     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     15   2.97495  3.62778  0.11287  3.53664     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     16   2.97495  3.62778  0.11287  3.53664     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     17   3.47868  0.12490  3.52618  2.86205     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     18   3.47868  0.12490  3.52618  2.86205     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     19   2.24921  3.23380  0.20964  3.11822     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     20   0.13678  3.41986  2.82758  3.32530     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     21   2.97495  3.62778  0.11287  3.53664     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     22   2.97495  3.62778  0.11287  3.53664     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     23   2.97495  3.62778  0.11287  3.53664     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     24   3.47868  0.12490  3.52618  2.86205     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     25   0.13678  3.41986  2.82758  3.32530     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     26   3.12876  2.62065  3.17537  0.17234     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     27   2.97495  3.62778  0.11287  3.53664     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     28   2.83058  1.96405  2.88853  0.29427     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     29   3.47868  0.12490  3.52618  2.86205     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     30   3.12876  2.62065  3.17537  0.17234     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     31   2.97495  3.62778  0.11287  3.53664     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     32   3.47868  0.12490  3.52618  2.86205     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     33   3.47868  0.12490  3.52618  2.86205     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     34   3.12876  2.62065  3.17537  0.17234     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     35   3.47868  0.12490  3.52618  2.86205     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     36   0.13678  3.41986  2.82758  3.32530     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     37   2.97495  3.62778  0.11287  3.53664     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     38   3.47868  0.12490  3.52618  2.86205     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     39   2.97495  3.62778  0.11287  3.53664     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     40   3.12876  2.62065  3.17537  0.17234     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     41   3.47868  0.12490  3.52618  2.86205     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     42   2.97495  3.62778  0.11287  3.53664     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     43   2.97495  3.62778  0.11287  3.53664     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     44   2.48929  0.64910  2.56125  1.14788     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03406  4.03406  1.46634  0.26236  1.09861  0.40547
+     45   3.12876  2.62065  3.17537  0.17234     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01819  4.01620        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_fourc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:05:38 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4033476049
+STATS LOCAL MSV       -7.5612  0.72774
+STATS LOCAL VITERBI   -8.2475  0.72774
+STATS LOCAL FORWARD   -3.2348  0.72774
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92209  1.13184  1.12344  1.57940
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.15554  1.00938  2.23102  0.88601     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_fourd_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:05:44 2012
+NSEQ  37
+EFFN  3.491333
+CKSUM 4193891022
+STATS LOCAL MSV       -7.3473  0.71933
+STATS LOCAL VITERBI   -7.6159  0.71933
+STATS LOCAL FORWARD   -3.6748  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81457  1.15055  1.12962  1.62216
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  0.00000        *
+      1   2.98381  3.64076  0.11152  3.55100      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+      2   3.49351  0.12323  3.54036  2.87276      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+      3   2.98381  3.64076  0.11152  3.55100      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+      4   3.49351  0.12323  3.54036  2.87276      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+      5   3.14193  2.62901  3.18803  0.17032      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+      6   3.06128  0.23563  3.12175  2.12847      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+      7   2.98381  3.64076  0.11152  3.55100      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+      8   0.13515  3.43277  2.83592  3.33945      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+      9   2.98381  3.64076  0.11152  3.55100      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     10   2.36747  3.31821  0.18678  3.20795     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     11   3.49351  0.12323  3.54036  2.87276     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     12   2.58532  0.51894  2.65603  1.34996     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     13   3.14193  2.62901  3.18803  0.17032     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     14   3.35284  0.15345  3.40426  2.60314     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     15   2.98381  3.64076  0.11152  3.55100     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     16   2.98381  3.64076  0.11152  3.55100     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     17   3.12324  0.21522  3.18195  2.22456     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     18   3.49351  0.12323  3.54036  2.87276     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     19   0.13515  3.43277  2.83592  3.33945     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     20   0.13515  3.43277  2.83592  3.33945     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     21   2.98381  3.64076  0.11152  3.55100     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     22   0.13515  3.43277  2.83592  3.33945     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     23   2.98381  3.64076  0.11152  3.55100     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     24   3.49351  0.12323  3.54036  2.87276     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     25   0.13515  3.43277  2.83592  3.33945     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     26   3.14193  2.62901  3.18803  0.17032     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     27   2.98381  3.64076  0.11152  3.55100     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     28   3.14193  2.62901  3.18803  0.17032     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     29   3.49351  0.12323  3.54036  2.87276     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     30   3.14193  2.62901  3.18803  0.17032     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     31   2.98381  3.64076  0.11152  3.55100     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     32   2.20534  0.64774  1.42928  2.06296     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     33   3.49351  0.12323  3.54036  2.87276     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     34   3.14193  2.62901  3.18803  0.17032     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     35   3.49351  0.12323  3.54036  2.87276     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     36   0.13515  3.43277  2.83592  3.33945     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     37   2.98381  3.64076  0.11152  3.55100     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     38   3.49351  0.12323  3.54036  2.87276     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     39   2.98381  3.64076  0.11152  3.55100     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     40   3.14193  2.62901  3.18803  0.17032     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     41   3.49351  0.12323  3.54036  2.87276     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     42   2.98381  3.64076  0.11152  3.55100     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     43   2.98381  3.64076  0.11152  3.55100     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     44   3.49351  0.12323  3.54036  2.87276     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03577  4.04153  4.04153  1.46634  0.26236  1.09861  0.40547
+     45   3.14193  2.62901  3.18803  0.17032     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01805  4.02380        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_foure_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:05:49 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3417266488
+STATS LOCAL MSV       -7.7330  0.72754
+STATS LOCAL VITERBI   -8.2607  0.72754
+STATS LOCAL FORWARD   -3.0985  0.72754
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.59465  1.19407  1.26934  1.54638
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_fourf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:06:00 2012
+NSEQ  8
+EFFN  3.167969
+CKSUM 3434890060
+STATS LOCAL MSV       -8.1024  0.71933
+STATS LOCAL VITERBI   -7.7981  0.71933
+STATS LOCAL FORWARD   -4.1734  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92630  1.26262  1.04226  1.51985
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  0.00000        *
+      1   2.91173  3.53592  0.12299  3.43528      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      2   3.37444  0.13743  3.42635  2.78609      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      3   2.91173  3.53592  0.12299  3.43528      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      4   3.37444  0.13743  3.42635  2.78609      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      5   3.37444  0.13743  3.42635  2.78609      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      6   3.37444  0.13743  3.42635  2.78609      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      7   0.14880  3.32943  2.76878  3.22633      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      8   0.14880  3.32943  2.76878  3.22633      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      9   2.91173  3.53592  0.12299  3.43528      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     10   2.91173  3.53592  0.12299  3.43528     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     11   3.37444  0.13743  3.42635  2.78609     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     12   3.03758  2.56263  3.08768  0.18713     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     13   3.03758  2.56263  3.08768  0.18713     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     14   3.37444  0.13743  3.42635  2.78609     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     15   2.91173  3.53592  0.12299  3.43528     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     16   2.91173  3.53592  0.12299  3.43528     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     17   3.37444  0.13743  3.42635  2.78609     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     18   3.03758  2.56263  3.08768  0.18713     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     19   2.91173  3.53592  0.12299  3.43528     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     20   0.14880  3.32943  2.76878  3.22633     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     21   2.91173  3.53592  0.12299  3.43528     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     22   2.91173  3.53592  0.12299  3.43528     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     23   2.91173  3.53592  0.12299  3.43528     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     24   3.37444  0.13743  3.42635  2.78609     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     25   0.14880  3.32943  2.76878  3.22633     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     26   3.03758  2.56263  3.08768  0.18713     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     27   2.91173  3.53592  0.12299  3.43528     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     28   3.03758  2.56263  3.08768  0.18713     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     29   3.03758  2.56263  3.08768  0.18713     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     30   3.03758  2.56263  3.08768  0.18713     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     31   2.91173  3.53592  0.12299  3.43528     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     32   3.37444  0.13743  3.42635  2.78609     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     33   3.37444  0.13743  3.42635  2.78609     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     34   3.03758  2.56263  3.08768  0.18713     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     35   3.37444  0.13743  3.42635  2.78609     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     36   0.14880  3.32943  2.76878  3.22633     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     37   2.91173  3.53592  0.12299  3.43528     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     38   3.37444  0.13743  3.42635  2.78609     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     39   2.91173  3.53592  0.12299  3.43528     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     40   3.03758  2.56263  3.08768  0.18713     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     41   3.37444  0.13743  3.42635  2.78609     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     42   2.91173  3.53592  0.12299  3.43528     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     43   2.91173  3.53592  0.12299  3.43528     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     44   2.91173  3.53592  0.12299  3.43528     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     45   2.75074  1.94228  2.81080  0.31118     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01917  3.96423        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_fourg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:06:07 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2243792262
+STATS LOCAL MSV       -7.3533  0.72732
+STATS LOCAL VITERBI   -8.2770  0.72732
+STATS LOCAL FORWARD   -3.2502  0.72732
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92263  1.24319  1.07887  1.49018
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_fourteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:09:05 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3072563933
+STATS LOCAL MSV       -7.4500  0.72782
+STATS LOCAL VITERBI   -8.2633  0.72782
+STATS LOCAL FORWARD   -3.4545  0.72782
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92135  1.28482  1.17173  1.32028
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:07:08 2012
+NSEQ  8
+EFFN  3.128906
+CKSUM 2240641702
+STATS LOCAL MSV       -8.0911  0.71933
+STATS LOCAL VITERBI   -7.7425  0.71933
+STATS LOCAL FORWARD   -4.1987  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82201  1.15564  1.14738  1.58000
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  0.00000        *
+      1   2.90228  3.52232  0.12458  3.42031      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      2   3.35912  0.13939  3.41165  2.77481      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
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+     43   2.90228  3.52232  0.12458  3.42031     43 - -
+          1.38629  1.38629  1.38629  1.38629
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+     44   3.35912  0.13939  3.41165  2.77481     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     45   3.02437  2.55419  3.07496  0.18939     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01931  3.95679        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_onea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:03:35 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2817009518
+STATS LOCAL MSV       -7.3765  0.72757
+STATS LOCAL VITERBI   -8.2230  0.72757
+STATS LOCAL FORWARD   -3.3891  0.72757
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66659  1.24202  1.21600  1.48769
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
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+      2   2.81865  0.23582  2.88868  2.35662      2 - -
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+      3   2.53331  3.02441  0.20344  2.88069      3 - -
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+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_onec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:03:55 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1434293828
+STATS LOCAL MSV       -8.0810  0.72041
+STATS LOCAL VITERBI   -7.9114  0.72041
+STATS LOCAL FORWARD   -4.0225  0.72041
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62529  1.31451  1.19507  1.46163
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.86982  3.47591  0.13017  3.36931      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.43088  1.34923  2.50068  0.56112     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   3.30705  0.14631  3.36166  2.73626     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.86982  3.47591  0.13017  3.36931     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_oned_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:04:07 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 468697630
+STATS LOCAL MSV       -7.3499  0.72735
+STATS LOCAL VITERBI   -8.3054  0.72735
+STATS LOCAL FORWARD   -3.4738  0.72735
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66060  1.40893  1.07299  1.49796
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_onee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:04:21 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2249999661
+STATS LOCAL MSV       -7.5609  0.72738
+STATS LOCAL VITERBI   -8.2838  0.72738
+STATS LOCAL FORWARD   -3.3217  0.72738
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66646  1.24503  1.16756  1.55104
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:06:49 2012
+NSEQ  50
+EFFN  3.720093
+CKSUM 357463622
+STATS LOCAL MSV       -6.8679  0.71933
+STATS LOCAL VITERBI   -7.7200  0.71933
+STATS LOCAL FORWARD   -4.4179  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55975  1.15919  1.26176  1.64550
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  0.00000        *
+      1   3.56985  0.11502  3.61331  2.92754      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+      2   3.56985  0.11502  3.61331  2.92754      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+      3   3.02897  3.70726  0.10488  3.62466      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+      4   3.02897  3.70726  0.10488  3.62466      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+      5   3.21060  2.67254  3.25402  0.16020      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+      6   3.56985  0.11502  3.61331  2.92754      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+      7   3.02897  3.70726  0.10488  3.62466      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+      8   0.12711  3.49946  2.87886  3.41264      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+      9   1.93380  0.79778  1.32089  1.97922      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     10   2.13834  2.44062  2.72922  0.31502     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     11   3.56985  0.11502  3.61331  2.92754     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     12   3.21060  2.67254  3.25402  0.16020     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     13   3.08820  2.36855  3.13664  0.20166     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     14   3.56985  0.11502  3.61331  2.92754     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     15   3.02897  3.70726  0.10488  3.62466     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     16   3.02897  3.70726  0.10488  3.62466     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     17   0.27334  2.87968  2.58561  2.22878     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     18   2.03406  1.52747  0.81004  1.57372     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     19   3.02897  3.70726  0.10488  3.62466     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     20   0.12711  3.49946  2.87886  3.41264     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     21   3.02897  3.70726  0.10488  3.62466     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     22   0.12711  3.49946  2.87886  3.41264     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     23   3.56985  0.11502  3.61331  2.92754     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     24   3.56985  0.11502  3.61331  2.92754     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     25   0.12711  3.49946  2.87886  3.41264     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     26   3.56985  0.11502  3.61331  2.92754     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     27   0.12711  3.49946  2.87886  3.41264     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     28   3.21060  2.67254  3.25402  0.16020     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     29   3.56985  0.11502  3.61331  2.92754     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     30   3.21060  2.67254  3.25402  0.16020     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     31   3.02897  3.70726  0.10488  3.62466     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     32   3.33940  0.16483  3.39119  2.49090     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     33   3.56985  0.11502  3.61331  2.92754     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     34   3.21060  2.67254  3.25402  0.16020     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     35   3.56985  0.11502  3.61331  2.92754     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     36   0.12711  3.49946  2.87886  3.41264     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     37   3.02897  3.70726  0.10488  3.62466     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     38   3.56985  0.11502  3.61331  2.92754     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     39   3.02897  3.70726  0.10488  3.62466     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     40   3.21060  2.67254  3.25402  0.16020     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     41   3.56985  0.11502  3.61331  2.92754     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     42   3.02897  3.70726  0.10488  3.62466     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     43   3.02897  3.70726  0.10488  3.62466     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     44   0.28650  3.01784  1.93054  2.89794     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03437  4.08094  4.08094  1.46634  0.26236  1.09861  0.40547
+     45   0.12711  3.49946  2.87886  3.41264     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01733  4.06390        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_seventeena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:10:11 2012
+NSEQ  29
+EFFN  3.451538
+CKSUM 3894991408
+STATS LOCAL MSV       -7.0988  0.71933
+STATS LOCAL VITERBI   -7.8238  0.71933
+STATS LOCAL FORWARD   -3.7643  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92953  1.07117  1.03558  1.85051
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  0.00000        *
+      1   3.47958  0.12480  3.52704  2.86271      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+      2   3.47958  0.12480  3.52704  2.86271      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+      3   3.12956  2.62116  3.17614  0.17222      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+      4   3.06193  0.23335  3.12238  2.14323      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+      5   2.97217  0.26645  3.03499  2.00519      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+      6   3.31033  0.16208  3.36320  2.54466      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+      7   2.57191  0.52728  2.64282  1.33850      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+      8   3.12956  2.62116  3.17614  0.17222      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+      9   3.04620  0.23880  3.10708  2.11894      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     10   2.97549  3.62857  0.11279  3.53751     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     11   3.47958  0.12480  3.52704  2.86271     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     12   3.47958  0.12480  3.52704  2.86271     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     13   2.50245  1.28434  2.57140  0.57119     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     14   2.80379  1.91051  2.86272  0.30884     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     15   3.47958  0.12480  3.52704  2.86271     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     16   2.97549  3.62857  0.11279  3.53751     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     17   2.97549  3.62857  0.11279  3.53751     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     18   2.97549  3.62857  0.11279  3.53751     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     19   3.47958  0.12480  3.52704  2.86271     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     20   2.97549  3.62857  0.11279  3.53751     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     21   2.97549  3.62857  0.11279  3.53751     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     22   0.13668  3.42064  2.82809  3.32616     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     23   2.97549  3.62857  0.11279  3.53751     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     24   2.97549  3.62857  0.11279  3.53751     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     25   2.97549  3.62857  0.11279  3.53751     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     26   0.13668  3.42064  2.82809  3.32616     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     27   2.97549  3.62857  0.11279  3.53751     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     28   2.97549  3.62857  0.11279  3.53751     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     29   0.13668  3.42064  2.82809  3.32616     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     30   3.47958  0.12480  3.52704  2.86271     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     31   2.97549  3.62857  0.11279  3.53751     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     32   3.47958  0.12480  3.52704  2.86271     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     33   2.97549  3.62857  0.11279  3.53751     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     34   3.12956  2.62116  3.17614  0.17222     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     35   3.47958  0.12480  3.52704  2.86271     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     36   2.97549  3.62857  0.11279  3.53751     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     37   2.97549  3.62857  0.11279  3.53751     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     38   3.47958  0.12480  3.52704  2.86271     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     39   2.97549  3.62857  0.11279  3.53751     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     40   0.13668  3.42064  2.82809  3.32616     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     41   3.47958  0.12480  3.52704  2.86271     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     42   0.13668  3.42064  2.82809  3.32616     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     43   3.12956  2.62116  3.17614  0.17222     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     44   3.47958  0.12480  3.52704  2.86271     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03451  4.03451  1.46634  0.26236  1.09861  0.40547
+     45   2.97549  3.62857  0.11279  3.53751     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01818  4.01666        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_seventeenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:10:17 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 249208300
+STATS LOCAL MSV       -7.6792  0.72790
+STATS LOCAL VITERBI   -8.3766  0.72790
+STATS LOCAL FORWARD   -3.4913  0.72790
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81799  1.27937  1.06160  1.54396
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   1.88179  1.10717  1.04597  1.79675      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.53331  3.02441  0.20344  2.88069     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   0.23862  2.84929  2.43386  2.70756     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:06:39 2012
+NSEQ  17
+EFFN  3.980225
+CKSUM 2906984672
+STATS LOCAL MSV       -6.7869  0.71932
+STATS LOCAL VITERBI   -7.5454  0.71932
+STATS LOCAL FORWARD   -4.0611  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.85715  1.19405  1.09141  1.58401
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  0.00000        *
+      1   3.07541  3.77607  0.09847  3.70103      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+      2   3.64943  0.10712  3.68925  2.98409      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+      3   3.07541  3.77607  0.09847  3.70103      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.12050  4.12394  2.32951  1.46634  0.26236  1.09861  0.40547
+      4   2.22469  1.56800  0.55225  2.22762      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03929  4.03929  1.46634  0.26236  0.28702  1.38830
+      5   3.28389  2.71903  3.32443  0.15014      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+      6   3.64943  0.10712  3.68925  2.98409      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+      7   3.07541  3.77607  0.09847  3.70103      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+      8   0.28744  2.20718  2.59167  2.73466      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+      9   3.07541  3.77607  0.09847  3.70103      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     10   3.07541  3.77607  0.09847  3.70103     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     11   3.64943  0.10712  3.68925  2.98409     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     12   3.28389  2.71903  3.32443  0.15014     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     13   2.86749  1.79659  2.92573  0.32342     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     14   3.64943  0.10712  3.68925  2.98409     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     15   3.07541  3.77607  0.09847  3.70103     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     16   3.07541  3.77607  0.09847  3.70103     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     17   3.64943  0.10712  3.68925  2.98409     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     18   3.64943  0.10712  3.68925  2.98409     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     19   0.33002  2.97170  1.76064  2.84832     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     20   0.11925  3.56948  2.92381  3.48959     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     21   3.07541  3.77607  0.09847  3.70103     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     22   0.11925  3.56948  2.92381  3.48959     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     23   2.40105  0.49799  1.64417  2.22143     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     24   3.64943  0.10712  3.68925  2.98409     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     25   0.11925  3.56948  2.92381  3.48959     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     26   3.28389  2.71903  3.32443  0.15014     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     27   3.07541  3.77607  0.09847  3.70103     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     28   3.28389  2.71903  3.32443  0.15014     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     29   3.17166  0.22292  3.22923  2.13454     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     30   3.28389  2.71903  3.32443  0.15014     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     31   3.07541  3.77607  0.09847  3.70103     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     32   3.64943  0.10712  3.68925  2.98409     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     33   3.64943  0.10712  3.68925  2.98409     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     34   3.28389  2.71903  3.32443  0.15014     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     35   3.64943  0.10712  3.68925  2.98409     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     36   0.11925  3.56948  2.92381  3.48959     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     37   3.07541  3.77607  0.09847  3.70103     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     38   3.64943  0.10712  3.68925  2.98409     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     39   3.07541  3.77607  0.09847  3.70103     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     40   3.28389  2.71903  3.32443  0.15014     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     41   3.64943  0.10712  3.68925  2.98409     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     42   3.07541  3.77607  0.09847  3.70103     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     43   3.07541  3.77607  0.09847  3.70103     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     44   2.38060  2.30790  1.57434  0.50934     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03290  4.12394  4.12394  1.46634  0.26236  1.09861  0.40547
+     45   2.34746  2.51922  0.48655  1.56482     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01658  4.10763        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_sixteena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:09:41 2012
+NSEQ  6
+EFFN  3.260742
+CKSUM 3078536325
+STATS LOCAL MSV       -8.1805  0.71933
+STATS LOCAL VITERBI   -7.9042  0.71933
+STATS LOCAL FORWARD   -3.9223  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82150  1.14689  1.17178  1.55695
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  0.00000        *
+      1   3.41001  0.13300  3.46044  2.81215      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+      2   2.93350  3.56738  0.11941  3.46995      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+      3   3.06843  2.58230  3.11735  0.18196      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+      4   3.41001  0.13300  3.46044  2.81215      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+      5   3.41001  0.13300  3.46044  2.81215      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+      6   3.41001  0.13300  3.46044  2.81215      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+      7   3.06843  2.58230  3.11735  0.18196      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+      8   3.06843  2.58230  3.11735  0.18196      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+      9   3.41001  0.13300  3.46044  2.81215      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     10   2.93350  3.56738  0.11941  3.46995     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     11   3.41001  0.13300  3.46044  2.81215     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     12   0.14457  3.36023  2.78889  3.26000     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     13   2.93350  3.56738  0.11941  3.46995     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     14   3.41001  0.13300  3.46044  2.81215     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     15   3.06843  2.58230  3.11735  0.18196     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     16   3.06843  2.58230  3.11735  0.18196     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     17   3.41001  0.13300  3.46044  2.81215     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     18   2.13978  2.25773  0.68256  1.30045     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     19   2.93350  3.56738  0.11941  3.46995     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     20   3.06843  2.58230  3.11735  0.18196     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     21   3.06843  2.58230  3.11735  0.18196     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     22   2.93350  3.56738  0.11941  3.46995     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     23   3.41001  0.13300  3.46044  2.81215     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     24   0.14457  3.36023  2.78889  3.26000     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     25   0.14457  3.36023  2.78889  3.26000     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     26   2.93350  3.56738  0.11941  3.46995     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     27   2.93350  3.56738  0.11941  3.46995     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     28   2.93350  3.56738  0.11941  3.46995     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     29   2.93350  3.56738  0.11941  3.46995     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     30   3.41001  0.13300  3.46044  2.81215     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     31   2.93350  3.56738  0.11941  3.46995     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     32   3.41001  0.13300  3.46044  2.81215     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     33   2.93350  3.56738  0.11941  3.46995     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     34   3.06843  2.58230  3.11735  0.18196     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     35   3.41001  0.13300  3.46044  2.81215     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     36   2.93350  3.56738  0.11941  3.46995     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     37   2.93350  3.56738  0.11941  3.46995     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     38   3.41001  0.13300  3.46044  2.81215     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     39   0.14457  3.36023  2.78889  3.26000     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     40   0.14457  3.36023  2.78889  3.26000     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     41   3.41001  0.13300  3.46044  2.81215     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     42   0.14457  3.36023  2.78889  3.26000     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     43   3.06843  2.58230  3.11735  0.18196     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     44   3.41001  0.13300  3.46044  2.81215     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     45   2.93350  3.56738  0.11941  3.46995     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01883  3.98169        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_sixteenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:09:50 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3471750801
+STATS LOCAL MSV       -8.0728  0.71994
+STATS LOCAL VITERBI   -7.9293  0.71994
+STATS LOCAL FORWARD   -3.8206  0.71994
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81571  1.20993  1.15028  1.50278
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   3.30705  0.14631  3.36166  2.73626     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   0.15719  3.27118  2.73043  3.16274     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.86982  3.47591  0.13017  3.36931     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.86982  3.47591  0.13017  3.36931     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.86982  3.47591  0.13017  3.36931     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_sixteenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:09:56 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4112059469
+STATS LOCAL MSV       -7.5858  0.72737
+STATS LOCAL VITERBI   -8.4289  0.72737
+STATS LOCAL FORWARD   -3.3634  0.72737
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74703  1.19425  1.17291  1.54500
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.53331  3.02441  0.20344  2.88069     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.53331  3.02441  0.20344  2.88069     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_tena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:07:19 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 591123521
+STATS LOCAL MSV       -7.5741  0.72700
+STATS LOCAL VITERBI   -8.3318  0.72700
+STATS LOCAL FORWARD   -3.2610  0.72700
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74607  1.20240  1.07782  1.68885
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_tenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:07:25 2012
+NSEQ  5
+EFFN  3.247070
+CKSUM 2521986931
+STATS LOCAL MSV       -8.1587  0.71933
+STATS LOCAL VITERBI   -7.8377  0.71933
+STATS LOCAL FORWARD   -3.8876  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.67141  1.26560  1.12663  1.58072
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  0.00000        *
+      1   2.93035  3.56282  0.11992  3.46492      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
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+     44   3.06393  2.57943  3.11303  0.18271     44 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   2.93035  3.56282  0.11992  3.46492     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97913        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_tenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:07:32 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3208501958
+STATS LOCAL MSV       -7.5772  0.72723
+STATS LOCAL VITERBI   -8.1443  0.72723
+STATS LOCAL FORWARD   -3.3746  0.72723
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74235  1.29869  1.07600  1.55568
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
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+      2   2.81865  0.23582  2.88868  2.35662      2 - -
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+      3   2.53331  3.02441  0.20344  2.88069      3 - -
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+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_thirteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:08:41 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1843024009
+STATS LOCAL MSV       -7.3966  0.72771
+STATS LOCAL VITERBI   -8.2127  0.72771
+STATS LOCAL FORWARD   -3.4704  0.72771
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82835  1.28871  1.17034  1.37265
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:05:03 2012
+NSEQ  36
+EFFN  3.177246
+CKSUM 3671677378
+STATS LOCAL MSV       -8.0233  0.71932
+STATS LOCAL VITERBI   -7.5418  0.71932
+STATS LOCAL FORWARD   -3.8393  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73557  1.15352  1.14079  1.66808
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  0.00000        *
+      1   2.91395  3.53912  0.12262  3.43880      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+      2   3.37805  0.13697  3.42981  2.78874      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+      3   2.91395  3.53912  0.12262  3.43880      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+      4   3.37805  0.13697  3.42981  2.78874      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+      5   3.04070  2.56462  3.09068  0.18660      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+      6   3.37805  0.13697  3.42981  2.78874      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+      7   2.91395  3.53912  0.12262  3.43880      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+      8   0.14836  3.33255  2.77082  3.22974      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+      9   2.91395  3.53912  0.12262  3.43880      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     10   2.91395  3.53912  0.12262  3.43880     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     11   3.37805  0.13697  3.42981  2.78874     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     12   3.04070  2.56462  3.09068  0.18660     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     13   2.83286  2.10204  2.89003  0.27001     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     14   3.37805  0.13697  3.42981  2.78874     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     15   2.91395  3.53912  0.12262  3.43880     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     16   2.91395  3.53912  0.12262  3.43880     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     17   3.37805  0.13697  3.42981  2.78874     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     18   3.37805  0.13697  3.42981  2.78874     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     19   0.24927  3.01762  2.14913  2.89812     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     20   0.14836  3.33255  2.77082  3.22974     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     21   2.91395  3.53912  0.12262  3.43880     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     22   0.14836  3.33255  2.77082  3.22974     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     23   2.91395  3.53912  0.12262  3.43880     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     24   3.37805  0.13697  3.42981  2.78874     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     25   0.14836  3.33255  2.77082  3.22974     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     26   3.04070  2.56462  3.09068  0.18660     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     27   2.91395  3.53912  0.12262  3.43880     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     28   3.04070  2.56462  3.09068  0.18660     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     29   3.37805  0.13697  3.42981  2.78874     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     30   3.04070  2.56462  3.09068  0.18660     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     31   2.91395  3.53912  0.12262  3.43880     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     32   3.37805  0.13697  3.42981  2.78874     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     33   3.37805  0.13697  3.42981  2.78874     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     34   3.04070  2.56462  3.09068  0.18660     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     35   3.37805  0.13697  3.42981  2.78874     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     36   0.14836  3.33255  2.77082  3.22974     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     37   2.91395  3.53912  0.12262  3.43880     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     38   3.37805  0.13697  3.42981  2.78874     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     39   2.91395  3.53912  0.12262  3.43880     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     40   3.04070  2.56462  3.09068  0.18660     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     41   3.37805  0.13697  3.42981  2.78874     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     42   2.91395  3.53912  0.12262  3.43880     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     43   2.91395  3.53912  0.12262  3.43880     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     44   3.37805  0.13697  3.42981  2.78874     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03790  3.98476  3.98476  1.46634  0.26236  1.09861  0.40547
+     45   0.14836  3.33255  2.77082  3.22974     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01913  3.96599        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_twelve_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:08:30 2012
+NSEQ  4
+EFFN  3.300781
+CKSUM 2752840731
+STATS LOCAL MSV       -8.1722  0.71931
+STATS LOCAL VITERBI   -7.4014  0.71931
+STATS LOCAL FORWARD   -3.9277  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.77926  1.32153  1.11938  1.43537
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  0.00000        *
+      1   2.94261  3.58061  0.11794  3.48454      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      2   3.42500  0.13118  3.47480  2.82309      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      3   2.94261  3.58061  0.11794  3.48454      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      4   3.42500  0.13118  3.47480  2.82309      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      5   3.42500  0.13118  3.47480  2.82309      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      6   3.08151  2.59063  3.12994  0.17982      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      7   2.94261  3.58061  0.11794  3.48454      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      8   0.14283  3.37323  2.79735  3.27422      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      9   2.94261  3.58061  0.11794  3.48454      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     10   2.94261  3.58061  0.11794  3.48454     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     11   3.08151  2.59063  3.12994  0.17982     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     12   3.42500  0.13118  3.47480  2.82309     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     13   3.08151  2.59063  3.12994  0.17982     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     14   0.14283  3.37323  2.79735  3.27422     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     15   2.94261  3.58061  0.11794  3.48454     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     16   2.94261  3.58061  0.11794  3.48454     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     17   3.42500  0.13118  3.47480  2.82309     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     18   3.42500  0.13118  3.47480  2.82309     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     19   0.86244  2.51162  0.90909  2.36616     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     20   0.14283  3.37323  2.79735  3.27422     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     21   0.14283  3.37323  2.79735  3.27422     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     22   2.94261  3.58061  0.11794  3.48454     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     23   2.94261  3.58061  0.11794  3.48454     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     24   3.42500  0.13118  3.47480  2.82309     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     25   0.14283  3.37323  2.79735  3.27422     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     26   3.08151  2.59063  3.12994  0.17982     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     27   2.94261  3.58061  0.11794  3.48454     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     28   3.08151  2.59063  3.12994  0.17982     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     29   3.42500  0.13118  3.47480  2.82309     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     30   3.08151  2.59063  3.12994  0.17982     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     31   2.94261  3.58061  0.11794  3.48454     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     32   2.94261  3.58061  0.11794  3.48454     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     33   3.42500  0.13118  3.47480  2.82309     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     34   3.08151  2.59063  3.12994  0.17982     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     35   3.42500  0.13118  3.47480  2.82309     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     36   0.14283  3.37323  2.79735  3.27422     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     37   2.94261  3.58061  0.11794  3.48454     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     38   3.42500  0.13118  3.47480  2.82309     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     39   2.94261  3.58061  0.11794  3.48454     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     40   3.08151  2.59063  3.12994  0.17982     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     41   3.42500  0.13118  3.47480  2.82309     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     42   2.94261  3.58061  0.11794  3.48454     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     43   3.08151  2.59063  3.12994  0.17982     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     44   3.08151  2.59063  3.12994  0.17982     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     45   3.08151  2.59063  3.12994  0.17982     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01869  3.98913        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_twoa_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:04:32 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2739376932
+STATS LOCAL MSV       -7.4352  0.72757
+STATS LOCAL VITERBI   -8.2244  0.72757
+STATS LOCAL FORWARD   -3.3792  0.72757
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66657  1.24078  1.21694  1.48806
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_twob_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:04:41 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1824079490
+STATS LOCAL MSV       -7.5181  0.72709
+STATS LOCAL VITERBI   -8.2910  0.72709
+STATS LOCAL FORWARD   -3.1134  0.72709
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92688  1.15177  1.08069  1.61465
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_twoc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:04:47 2012
+NSEQ  15
+EFFN  3.475342
+CKSUM 461947662
+STATS LOCAL MSV       -7.2050  0.71933
+STATS LOCAL VITERBI   -7.8038  0.71933
+STATS LOCAL FORWARD   -4.0938  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.77648  1.19246  1.17175  1.52571
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  0.00000        *
+      1   2.98048  3.63588  0.11203  3.54560      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+      2   3.48793  0.12386  3.53504  2.86874      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+      3   2.98048  3.63588  0.11203  3.54560      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+      4   3.48793  0.12386  3.53504  2.86874      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+      5   3.13697  2.62586  3.18327  0.17107      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+      6   3.48793  0.12386  3.53504  2.86874      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+      7   2.98048  3.63588  0.11203  3.54560      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+      8   0.13576  3.42792  2.83279  3.33413      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+      9   3.48793  0.12386  3.53504  2.86874      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     10   2.43808  1.01739  2.50945  0.75541     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     11   3.48793  0.12386  3.53504  2.86874     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     12   2.78360  0.35902  2.85076  1.70360     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     13   3.13697  2.62586  3.18327  0.17107     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     14   3.48793  0.12386  3.53504  2.86874     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     15   2.98048  3.63588  0.11203  3.54560     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     16   2.98048  3.63588  0.11203  3.54560     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     17   0.78647  2.54355  0.98033  2.39936     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     18   2.98048  3.63588  0.11203  3.54560     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     19   0.13576  3.42792  2.83279  3.33413     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     20   0.13576  3.42792  2.83279  3.33413     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     21   2.98048  3.63588  0.11203  3.54560     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     22   0.13576  3.42792  2.83279  3.33413     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     23   2.98048  3.63588  0.11203  3.54560     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     24   3.48793  0.12386  3.53504  2.86874     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     25   0.13576  3.42792  2.83279  3.33413     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     26   3.13697  2.62586  3.18327  0.17107     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     27   2.98048  3.63588  0.11203  3.54560     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     28   3.13697  2.62586  3.18327  0.17107     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     29   3.48793  0.12386  3.53504  2.86874     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     30   3.13697  2.62586  3.18327  0.17107     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     31   2.98048  3.63588  0.11203  3.54560     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     32   3.48793  0.12386  3.53504  2.86874     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     33   3.48793  0.12386  3.53504  2.86874     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     34   3.13697  2.62586  3.18327  0.17107     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     35   3.48793  0.12386  3.53504  2.86874     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     36   0.13576  3.42792  2.83279  3.33413     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     37   2.98048  3.63588  0.11203  3.54560     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     38   3.48793  0.12386  3.53504  2.86874     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     39   2.98048  3.63588  0.11203  3.54560     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     40   3.13697  2.62586  3.18327  0.17107     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     41   3.48793  0.12386  3.53504  2.86874     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     42   2.98048  3.63588  0.11203  3.54560     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     43   2.98048  3.63588  0.11203  3.54560     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     44   3.13697  2.62586  3.18327  0.17107     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03588  4.03872  4.03872  1.46634  0.26236  1.09861  0.40547
+     45   3.13697  2.62586  3.18327  0.17107     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01810  4.02094        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Chlorophyta_58S_end_twod_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:04:52 2012
+NSEQ  8
+EFFN  3.128906
+CKSUM 2498164724
+STATS LOCAL MSV       -7.9579  0.71933
+STATS LOCAL VITERBI   -7.7563  0.71933
+STATS LOCAL FORWARD   -3.6919  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82357  1.15560  1.14661  1.58002
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  0.00000        *
+      1   2.90228  3.52232  0.12458  3.42031      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      2   3.35912  0.13939  3.41165  2.77481      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      3   2.90228  3.52232  0.12458  3.42031      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      4   3.35912  0.13939  3.41165  2.77481      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      5   3.02437  2.55419  3.07496  0.18939      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      6   3.35912  0.13939  3.41165  2.77481      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      7   2.90228  3.52232  0.12458  3.42031      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      8   0.15066  3.31617  2.76009  3.21184      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      9   2.90228  3.52232  0.12458  3.42031      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     10   3.35912  0.13939  3.41165  2.77481     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     11   3.35912  0.13939  3.41165  2.77481     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     12   3.35912  0.13939  3.41165  2.77481     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     13   3.02437  2.55419  3.07496  0.18939     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     14   3.35912  0.13939  3.41165  2.77481     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     15   2.90228  3.52232  0.12458  3.42031     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     16   2.90228  3.52232  0.12458  3.42031     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     17   2.90228  3.52232  0.12458  3.42031     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     18   3.35912  0.13939  3.41165  2.77481     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     19   0.15066  3.31617  2.76009  3.21184     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     20   0.15066  3.31617  2.76009  3.21184     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     21   2.90228  3.52232  0.12458  3.42031     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     22   0.15066  3.31617  2.76009  3.21184     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     23   2.90228  3.52232  0.12458  3.42031     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     24   3.35912  0.13939  3.41165  2.77481     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     25   0.15066  3.31617  2.76009  3.21184     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     26   3.02437  2.55419  3.07496  0.18939     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     27   2.90228  3.52232  0.12458  3.42031     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     28   3.02437  2.55419  3.07496  0.18939     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     29   3.35912  0.13939  3.41165  2.77481     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     30   3.02437  2.55419  3.07496  0.18939     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     31   2.90228  3.52232  0.12458  3.42031     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     32   3.35912  0.13939  3.41165  2.77481     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     33   3.35912  0.13939  3.41165  2.77481     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     34   3.02437  2.55419  3.07496  0.18939     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     35   3.35912  0.13939  3.41165  2.77481     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     36   0.15066  3.31617  2.76009  3.21184     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     37   2.90228  3.52232  0.12458  3.42031     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     38   3.35912  0.13939  3.41165  2.77481     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     39   2.90228  3.52232  0.12458  3.42031     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     40   3.02437  2.55419  3.07496  0.18939     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     41   3.35912  0.13939  3.41165  2.77481     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     42   2.90228  3.52232  0.12458  3.42031     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     43   2.90228  3.52232  0.12458  3.42031     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     44   3.02437  2.55419  3.07496  0.18939     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     45   3.02437  2.55419  3.07496  0.18939     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01931  3.95679        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Chlorophyta_58S_start_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 27 23:54:20 2012
+NSEQ  48
+EFFN  3.495117
+CKSUM 2952332647
+STATS LOCAL MSV       -7.2226  0.71933
+STATS LOCAL VITERBI   -7.7596  0.71933
+STATS LOCAL FORWARD   -3.9921  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54562  1.42507  1.04449  1.63755
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  0.00000        *
+      1   0.40589  2.56427  2.39377  1.79967      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+      2   0.13501  3.43391  2.83666  3.34071      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+      3   0.13501  3.43391  2.83666  3.34071      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+      4   2.98459  3.64191  0.11140  3.55227      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+      5   3.49482  0.12308  3.54162  2.87371      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+      6   0.13501  3.43391  2.83666  3.34071      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+      7   3.14310  2.62975  3.18915  0.17014      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+      8   2.98459  3.64191  0.11140  3.55227      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+      9   3.49482  0.12308  3.54162  2.87371      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     10   2.98459  3.64191  0.11140  3.55227     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     11   3.01425  2.32087  3.06521  0.21557     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     12   1.55253  2.79478  0.41999  2.65775     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     13   2.98459  3.64191  0.11140  3.55227     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     14   3.14310  2.62975  3.18915  0.17014     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     15   2.88296  3.18424  0.14323  3.32242     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     16   2.98459  3.64191  0.11140  3.55227     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     17   0.13501  3.43391  2.83666  3.34071     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     18   3.49482  0.12308  3.54162  2.87371     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     19   2.98459  3.64191  0.11140  3.55227     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     20   2.98459  3.64191  0.11140  3.55227     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     21   3.49482  0.12308  3.54162  2.87371     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     22   3.14310  2.62975  3.18915  0.17014     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     23   3.49482  0.12308  3.54162  2.87371     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     24   2.98459  3.64191  0.11140  3.55227     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     25   2.98459  3.64191  0.11140  3.55227     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     26   3.14310  2.62975  3.18915  0.17014     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     27   3.14310  2.62975  3.18915  0.17014     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     28   3.49482  0.12308  3.54162  2.87371     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     29   3.18468  0.19693  3.24155  2.32019     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     30   3.36400  0.15102  3.41504  2.62150     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     31   2.98459  3.64191  0.11140  3.55227     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     32   2.61430  0.48908  2.68457  1.40511     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     33   2.98459  3.64191  0.11140  3.55227     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     34   3.14310  2.62975  3.18915  0.17014     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     35   3.49482  0.12308  3.54162  2.87371     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     36   2.98459  3.64191  0.11140  3.55227     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     37   0.13501  3.43391  2.83666  3.34071     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     38   3.14310  2.62975  3.18915  0.17014     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     39   2.98459  3.64191  0.11140  3.55227     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     40   0.13501  3.43391  2.83666  3.34071     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     41   0.13501  3.43391  2.83666  3.34071     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     42   2.98459  3.64191  0.11140  3.55227     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     43   2.98459  3.64191  0.11140  3.55227     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     44   0.13501  3.43391  2.83666  3.34071     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03575  4.04219  4.04219  1.46634  0.26236  1.09861  0.40547
+     45   3.49482  0.12308  3.54162  2.87371     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01803  4.02448        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Chlorophyta_58S_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 27 23:53:55 2012
+NSEQ  331
+EFFN  3.851128
+CKSUM 2567582358
+STATS LOCAL MSV       -7.4488  0.71932
+STATS LOCAL VITERBI   -7.4861  0.71932
+STATS LOCAL FORWARD   -4.0022  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16656  1.27448  1.60501  1.56974
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  0.00000        *
+      1   3.50422  0.13202  3.54985  2.73523      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+      2   0.12300  3.53547  2.90198  3.45220      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+      3   0.12300  3.53547  2.90198  3.45220      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+      4   3.61086  0.11087  3.65245  2.95674      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+      5   3.24813  2.69634  3.29008  0.15496      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+      6   3.61086  0.11087  3.65245  2.95674      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+      7   3.24813  2.69634  3.29008  0.15496      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+      8   3.61086  0.11087  3.65245  2.95674      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+      9   0.15822  3.33237  2.81684  2.97919      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     10   0.12300  3.53547  2.90198  3.45220     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     11   3.61086  0.11087  3.65245  2.95674     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     12   0.12300  3.53547  2.90198  3.45220     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     13   0.12300  3.53547  2.90198  3.45220     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     14   3.50903  0.13102  3.55448  2.74453     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     15   3.05296  3.74278  0.10152  3.66406     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     16   3.05296  3.74278  0.10152  3.66406     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     17   0.12300  3.53547  2.90198  3.45220     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     18   3.24813  2.69634  3.29008  0.15496     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     19   0.14638  3.44359  2.66951  3.35433     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     20   3.24813  2.69634  3.29008  0.15496     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     21   3.15237  0.14262  3.44032  2.84542     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     22   3.24813  2.69634  3.29008  0.15496     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     23   2.56157  2.56948  2.98235  0.22870     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     24   3.05296  3.74278  0.10152  3.66406     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     25   3.05296  3.74278  0.10152  3.66406     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     26   3.61086  0.11087  3.65245  2.95674     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     27   3.24813  2.69634  3.29008  0.15496     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     28   3.61086  0.11087  3.65245  2.95674     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     29   2.64088  1.41397  2.70662  0.48003     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     30   3.46311  0.14077  3.51034  2.65795     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     31   2.35815  2.89431  0.22091  3.03081     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     32   2.19068  0.69821  1.79649  1.49252     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     33   0.12300  3.53547  2.90198  3.45220     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     34   0.55932  2.20720  2.26768  1.53784     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     35   3.46311  0.14077  3.51034  2.65795     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     36   3.05296  3.74278  0.10152  3.66406     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     37   0.12300  3.53547  2.90198  3.45220     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     38   3.24813  2.69634  3.29008  0.15496     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     39   3.05296  3.74278  0.10152  3.66406     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     40   0.12300  3.53547  2.90198  3.45220     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     41   0.12300  3.53547  2.90198  3.45220     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     42   3.05296  3.74278  0.10152  3.66406     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     43   0.12300  3.53547  2.90198  3.45220     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     44   0.12300  3.53547  2.90198  3.45220     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03361  4.10283  4.10283  1.46634  0.26236  1.09861  0.40547
+     45   3.61086  0.11087  3.65245  2.95674     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01695  4.08617        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Chlorophyta_58S_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 27 23:54:11 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1723857228
+STATS LOCAL MSV       -7.9701  0.72049
+STATS LOCAL VITERBI   -7.6631  0.72049
+STATS LOCAL FORWARD   -3.9650  0.72049
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21943  1.38802  1.60191  1.37230
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Chlorophyta_58S_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 27 23:54:03 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1810826480
+STATS LOCAL MSV       -7.3071  0.72810
+STATS LOCAL VITERBI   -8.2380  0.72810
+STATS LOCAL FORWARD   -3.8550  0.72810
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23917  1.28915  1.56888  1.48462
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Chlorophyta_4_LSU_start_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:33:17 2012
+NSEQ  32
+EFFN  3.527344
+CKSUM 2012743755
+STATS LOCAL MSV       -7.4497  0.71931
+STATS LOCAL VITERBI   -7.6973  0.71931
+STATS LOCAL FORWARD   -4.3994  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.35480  1.36244  1.23357  1.63622
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  0.00000        *
+      1   0.93968  1.86458  1.85543  1.21099      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
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+     43   0.13381  3.44360  2.84291  3.35134     43 - -
+          1.38629  1.38629  1.38629  1.38629
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+     44   3.15301  2.63604  3.19868  0.16864     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03554  4.04784  4.04784  1.46634  0.26236  1.09861  0.40547
+     45   0.13381  3.44360  2.84291  3.35134     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01793  4.03022        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Chlorophyta_4_LSU_start_onea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:32:03 2012
+NSEQ  11
+EFFN  3.601318
+CKSUM 379381944
+STATS LOCAL MSV       -7.4834  0.71933
+STATS LOCAL VITERBI   -7.5869  0.71933
+STATS LOCAL FORWARD   -3.9658  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.30893  1.27801  1.46843  1.50954
+          1.38629  1.38629  1.38629  1.38629
+          0.03508  4.06067  4.06067  1.46634  0.26236  0.00000        *
+      1   1.44401  2.22516  2.33571  0.58119      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03508  4.06067  4.06067  1.46634  0.26236  1.09861  0.40547
+      2   3.17545  2.65027  3.22025  0.16529      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03508  4.06067  4.06067  1.46634  0.26236  1.09861  0.40547
+      3   3.17545  2.65027  3.22025  0.16529      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03508  4.06067  4.06067  1.46634  0.26236  1.09861  0.40547
+      4   3.53099  0.11912  3.57619  2.89972      4 - -
+          1.38629  1.38629  1.38629  1.38629
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+      5   3.00607  3.67347  0.10820  3.58721      5 - -
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+      6   0.13114  3.46546  2.85699  3.37531      6 - -
+          1.38629  1.38629  1.38629  1.38629
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+      7   3.53099  0.11912  3.57619  2.89972      7 - -
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+     43   0.13114  3.46546  2.85699  3.37531     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03508  4.06067  4.06067  1.46634  0.26236  1.09861  0.40547
+     44   3.17545  2.65027  3.22025  0.16529     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03508  4.06067  4.06067  1.46634  0.26236  1.09861  0.40547
+     45   0.13114  3.46546  2.85699  3.37531     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01770  4.04328        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Chlorophyta_4_LSU_start_oneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:32:09 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3141584239
+STATS LOCAL MSV       -7.9640  0.72014
+STATS LOCAL VITERBI   -7.7831  0.72014
+STATS LOCAL FORWARD   -3.8589  0.72014
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22757  1.15795  1.60695  1.64834
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   3.30705  0.14631  3.36166  2.73626     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Chlorophyta_4_LSU_start_onec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:32:18 2012
+NSEQ  6
+EFFN  3.307617
+CKSUM 3682386209
+STATS LOCAL MSV       -8.0356  0.71933
+STATS LOCAL VITERBI   -7.8157  0.71933
+STATS LOCAL FORWARD   -4.1473  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27479  1.35672  1.37691  1.55755
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  0.00000        *
+      1   3.08373  2.59204  3.13207  0.17946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+      2   3.08373  2.59204  3.13207  0.17946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+      3   3.08373  2.59204  3.13207  0.17946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+      4   3.42754  0.13087  3.47723  2.82494      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+      5   2.94415  3.58285  0.11770  3.48701      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+      6   0.14253  3.37543  2.79878  3.27663      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+      7   3.42754  0.13087  3.47723  2.82494      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+      8   3.42754  0.13087  3.47723  2.82494      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+      9   3.08373  2.59204  3.13207  0.17946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     10   2.94415  3.58285  0.11770  3.48701     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     11   0.14253  3.37543  2.79878  3.27663     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     12   2.94415  3.58285  0.11770  3.48701     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     13   3.42754  0.13087  3.47723  2.82494     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     14   3.08373  2.59204  3.13207  0.17946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     15   3.42754  0.13087  3.47723  2.82494     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     16   0.14253  3.37543  2.79878  3.27663     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     17   2.94415  3.58285  0.11770  3.48701     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     18   2.94415  3.58285  0.11770  3.48701     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     19   2.94415  3.58285  0.11770  3.48701     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     20   2.94415  3.58285  0.11770  3.48701     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     21   0.14253  3.37543  2.79878  3.27663     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     22   2.94415  3.58285  0.11770  3.48701     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     23   0.14253  3.37543  2.79878  3.27663     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     24   0.14253  3.37543  2.79878  3.27663     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     25   3.42754  0.13087  3.47723  2.82494     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     26   0.14253  3.37543  2.79878  3.27663     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     27   3.42754  0.13087  3.47723  2.82494     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     28   3.42754  0.13087  3.47723  2.82494     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     29   3.42754  0.13087  3.47723  2.82494     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     30   2.94415  3.58285  0.11770  3.48701     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     31   2.49371  0.60220  2.56569  1.22784     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     32   3.08373  2.59204  3.13207  0.17946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     33   2.94415  3.58285  0.11770  3.48701     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     34   0.14253  3.37543  2.79878  3.27663     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     35   0.14253  3.37543  2.79878  3.27663     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     36   3.42754  0.13087  3.47723  2.82494     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     37   3.08373  2.59204  3.13207  0.17946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     38   3.08373  2.59204  3.13207  0.17946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     39   0.14253  3.37543  2.79878  3.27663     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     40   0.14253  3.37543  2.79878  3.27663     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     41   2.94415  3.58285  0.11770  3.48701     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     42   3.42754  0.13087  3.47723  2.82494     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     43   0.14253  3.37543  2.79878  3.27663     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     44   3.08373  2.59204  3.13207  0.17946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00872  4.00872  1.46634  0.26236  1.09861  0.40547
+     45   0.14253  3.37543  2.79878  3.27663     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01867  3.99039        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Chlorophyta_4_LSU_start_oned_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:32:27 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3310277996
+STATS LOCAL MSV       -8.0340  0.72071
+STATS LOCAL VITERBI   -7.7803  0.72071
+STATS LOCAL FORWARD   -3.9164  0.72071
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21928  1.29810  1.50316  1.56504
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.10839  0.71588  1.38236  1.97456     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   0.15719  3.27118  2.73043  3.16274     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   3.30705  0.14631  3.36166  2.73626     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Chlorophyta_4_LSU_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:33:03 2012
+NSEQ  11
+EFFN  3.397217
+CKSUM 3928018479
+STATS LOCAL MSV       -7.3779  0.71931
+STATS LOCAL VITERBI   -7.7033  0.71931
+STATS LOCAL FORWARD   -4.2315  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.32042  1.51402  1.30568  1.41895
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  0.00000        *
+      1   1.38134  1.08048  2.05996  1.26632      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+      2   3.11246  2.61030  3.15970  0.17488      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+      3   3.11246  2.61030  3.15970  0.17488      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+      4   3.11246  2.61030  3.15970  0.17488      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+      5   2.96390  3.61162  0.11458  3.51878      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+      6   0.13882  3.40383  2.81721  3.30774      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+      7   3.46025  0.12702  3.50855  2.84871      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+      8   2.96390  3.61162  0.11458  3.51878      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+      9   0.13882  3.40383  2.81721  3.30774      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     10   3.11246  2.61030  3.15970  0.17488     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     11   2.96390  3.61162  0.11458  3.51878     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     12   3.11246  2.61030  3.15970  0.17488     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     13   3.11246  2.61030  3.15970  0.17488     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     14   2.96390  3.61162  0.11458  3.51878     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     15   3.11246  2.61030  3.15970  0.17488     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     16   3.46025  0.12702  3.50855  2.84871     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     17   2.96390  3.61162  0.11458  3.51878     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     18   2.96390  3.61162  0.11458  3.51878     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     19   3.46025  0.12702  3.50855  2.84871     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     20   2.96390  3.61162  0.11458  3.51878     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     21   0.13882  3.40383  2.81721  3.30774     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     22   2.96390  3.61162  0.11458  3.51878     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     23   2.96390  3.61162  0.11458  3.51878     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     24   0.13882  3.40383  2.81721  3.30774     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     25   0.13882  3.40383  2.81721  3.30774     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     26   0.13882  3.40383  2.81721  3.30774     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     27   3.46025  0.12702  3.50855  2.84871     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     28   3.46025  0.12702  3.50855  2.84871     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     29   3.46025  0.12702  3.50855  2.84871     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     30   2.96390  3.61162  0.11458  3.51878     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     31   3.46025  0.12702  3.50855  2.84871     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     32   3.11246  2.61030  3.15970  0.17488     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     33   2.96390  3.61162  0.11458  3.51878     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     34   0.13882  3.40383  2.81721  3.30774     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     35   0.13882  3.40383  2.81721  3.30774     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     36   3.46025  0.12702  3.50855  2.84871     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     37   3.11246  2.61030  3.15970  0.17488     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     38   3.11246  2.61030  3.15970  0.17488     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     39   0.13882  3.40383  2.81721  3.30774     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     40   0.13882  3.40383  2.81721  3.30774     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     41   2.96390  3.61162  0.11458  3.51878     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     42   3.46025  0.12702  3.50855  2.84871     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     43   0.13882  3.40383  2.81721  3.30774     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     44   3.11246  2.61030  3.15970  0.17488     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02485  4.02485  1.46634  0.26236  1.09861  0.40547
+     45   0.13882  3.40383  2.81721  3.30774     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01836  4.00683        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Chlorophyta_4_LSU_start_twoa_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:32:44 2012
+NSEQ  4
+EFFN  3.238281
+CKSUM 4153052600
+STATS LOCAL MSV       -8.0299  0.71931
+STATS LOCAL VITERBI   -7.6112  0.71931
+STATS LOCAL FORWARD   -4.0920  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33774  1.39206  1.38059  1.43731
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  0.00000        *
+      1   0.14557  3.35286  2.78409  3.25194      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      2   3.06103  2.57758  3.11024  0.18319      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      3   3.06103  2.57758  3.11024  0.18319      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      4   3.40150  0.13404  3.45229  2.80593      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      5   2.92831  3.55987  0.12026  3.46167      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      6   0.14557  3.35286  2.78409  3.25194      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      7   3.40150  0.13404  3.45229  2.80593      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      8   3.40150  0.13404  3.45229  2.80593      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      9   3.06103  2.57758  3.11024  0.18319      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     10   2.92831  3.55987  0.12026  3.46167     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     11   0.14557  3.35286  2.78409  3.25194     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     12   2.92831  3.55987  0.12026  3.46167     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     13   3.06103  2.57758  3.11024  0.18319     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     14   3.06103  2.57758  3.11024  0.18319     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     15   3.40150  0.13404  3.45229  2.80593     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     16   0.14557  3.35286  2.78409  3.25194     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     17   2.92831  3.55987  0.12026  3.46167     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     18   2.92831  3.55987  0.12026  3.46167     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     19   3.06103  2.57758  3.11024  0.18319     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     20   2.92831  3.55987  0.12026  3.46167     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     21   0.14557  3.35286  2.78409  3.25194     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     22   2.92831  3.55987  0.12026  3.46167     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     23   2.92831  3.55987  0.12026  3.46167     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     24   3.40150  0.13404  3.45229  2.80593     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     25   3.06103  2.57758  3.11024  0.18319     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     26   0.14557  3.35286  2.78409  3.25194     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     27   3.40150  0.13404  3.45229  2.80593     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     28   3.40150  0.13404  3.45229  2.80593     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     29   3.40150  0.13404  3.45229  2.80593     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     30   2.92831  3.55987  0.12026  3.46167     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     31   3.40150  0.13404  3.45229  2.80593     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     32   3.06103  2.57758  3.11024  0.18319     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     33   2.92831  3.55987  0.12026  3.46167     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     34   0.14557  3.35286  2.78409  3.25194     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     35   0.14557  3.35286  2.78409  3.25194     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     36   3.40150  0.13404  3.45229  2.80593     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     37   3.06103  2.57758  3.11024  0.18319     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     38   3.06103  2.57758  3.11024  0.18319     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     39   0.14557  3.35286  2.78409  3.25194     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     40   0.14557  3.35286  2.78409  3.25194     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     41   2.92831  3.55987  0.12026  3.46167     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     42   3.40150  0.13404  3.45229  2.80593     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     43   0.14557  3.35286  2.78409  3.25194     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     44   3.06103  2.57758  3.11024  0.18319     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     45   0.14557  3.35286  2.78409  3.25194     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01891  3.97749        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Chlorophyta_4_LSU_start_twob_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 28 01:32:51 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1487093802
+STATS LOCAL MSV       -7.3807  0.72793
+STATS LOCAL VITERBI   -8.0673  0.72793
+STATS LOCAL FORWARD   -3.4730  0.72793
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28936  1.34641  1.43436  1.48672
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Chlorophyta_1_SSU_end_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 23:25:17 2012
+NSEQ  7
+EFFN  3.264160
+CKSUM 2375868780
+STATS LOCAL MSV       -8.0557  0.71932
+STATS LOCAL VITERBI   -7.7021  0.71932
+STATS LOCAL FORWARD   -4.0473  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21299  1.71353  1.30623  1.37981
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  0.00000        *
+      1   0.14442  3.36134  2.78962  3.26122      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      2   2.93428  3.56852  0.11929  3.47120      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      3   3.06955  2.58301  3.11843  0.18178      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      4   3.41129  0.13284  3.46167  2.81309      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      5   2.93428  3.56852  0.11929  3.47120      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      6   3.06955  2.58301  3.11843  0.18178      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      7   0.14442  3.36134  2.78962  3.26122      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      8   0.14442  3.36134  2.78962  3.26122      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      9   3.41129  0.13284  3.46167  2.81309      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     10   0.14442  3.36134  2.78962  3.26122     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     11   0.14442  3.36134  2.78962  3.26122     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     12   2.93428  3.56852  0.11929  3.47120     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     13   2.93428  3.56852  0.11929  3.47120     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     14   3.06955  2.58301  3.11843  0.18178     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     15   3.06955  2.58301  3.11843  0.18178     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     16   3.06955  2.58301  3.11843  0.18178     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     17   3.06955  2.58301  3.11843  0.18178     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     18   3.41129  0.13284  3.46167  2.81309     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     19   2.93428  3.56852  0.11929  3.47120     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     20   3.06955  2.58301  3.11843  0.18178     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     21   0.14442  3.36134  2.78962  3.26122     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     22   2.93428  3.56852  0.11929  3.47120     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     23   2.93428  3.56852  0.11929  3.47120     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     24   3.06955  2.58301  3.11843  0.18178     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     25   2.93428  3.56852  0.11929  3.47120     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     26   0.14442  3.36134  2.78962  3.26122     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     27   0.14442  3.36134  2.78962  3.26122     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     28   3.41129  0.13284  3.46167  2.81309     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     29   3.41129  0.13284  3.46167  2.81309     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     30   3.06955  2.58301  3.11843  0.18178     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     31   2.93428  3.56852  0.11929  3.47120     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     32   3.41129  0.13284  3.46167  2.81309     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     33   2.93428  3.56852  0.11929  3.47120     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     34   0.14442  3.36134  2.78962  3.26122     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     35   0.14442  3.36134  2.78962  3.26122     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     36   0.14442  3.36134  2.78962  3.26122     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     37   2.93428  3.56852  0.11929  3.47120     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     38   2.93428  3.56852  0.11929  3.47120     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     39   0.14442  3.36134  2.78962  3.26122     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     40   3.06955  2.58301  3.11843  0.18178     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     41   3.41129  0.13284  3.46167  2.81309     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     42   0.14442  3.36134  2.78962  3.26122     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     43   3.06955  2.58301  3.11843  0.18178     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     44   3.06955  2.58301  3.11843  0.18178     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     45   0.14442  3.36134  2.78962  3.26122     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01882  3.98232        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Chlorophyta_1_SSU_end_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 23:25:06 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1482627613
+STATS LOCAL MSV       -7.6096  0.72751
+STATS LOCAL VITERBI   -8.2882  0.72751
+STATS LOCAL FORWARD   -3.6834  0.72751
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33866  1.47421  1.20851  1.55969
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Chlorophyta_1_SSU_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 23:24:42 2012
+NSEQ  17
+EFFN  3.183350
+CKSUM 2896528741
+STATS LOCAL MSV       -8.0312  0.71931
+STATS LOCAL VITERBI   -7.7110  0.71931
+STATS LOCAL FORWARD   -4.3559  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39905  1.54747  1.13673  1.51634
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  0.00000        *
+      1   0.14808  3.33460  2.77216  3.23198      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+      2   2.91540  3.54122  0.12238  3.44111      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+      3   3.04275  2.56593  3.09265  0.18625      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+      4   3.38042  0.13667  3.43208  2.79048      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+      5   2.91540  3.54122  0.12238  3.44111      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+      6   3.04275  2.56593  3.09265  0.18625      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+      7   0.14808  3.33460  2.77216  3.23198      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+      8   0.14808  3.33460  2.77216  3.23198      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+      9   3.38042  0.13667  3.43208  2.79048      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     10   0.14808  3.33460  2.77216  3.23198     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     11   0.14808  3.33460  2.77216  3.23198     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     12   2.91540  3.54122  0.12238  3.44111     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     13   2.91540  3.54122  0.12238  3.44111     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     14   3.04275  2.56593  3.09265  0.18625     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     15   3.38042  0.13667  3.43208  2.79048     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     16   3.04275  2.56593  3.09265  0.18625     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     17   3.38042  0.13667  3.43208  2.79048     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     18   3.38042  0.13667  3.43208  2.79048     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     19   2.91540  3.54122  0.12238  3.44111     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     20   3.04275  2.56593  3.09265  0.18625     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     21   0.14808  3.33460  2.77216  3.23198     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     22   2.91540  3.54122  0.12238  3.44111     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     23   2.91540  3.54122  0.12238  3.44111     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     24   3.04275  2.56593  3.09265  0.18625     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     25   2.91540  3.54122  0.12238  3.44111     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     26   0.14808  3.33460  2.77216  3.23198     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     27   0.14808  3.33460  2.77216  3.23198     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     28   3.38042  0.13667  3.43208  2.79048     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     29   3.38042  0.13667  3.43208  2.79048     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     30   3.04275  2.56593  3.09265  0.18625     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     31   2.91540  3.54122  0.12238  3.44111     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     32   3.38042  0.13667  3.43208  2.79048     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     33   2.91540  3.54122  0.12238  3.44111     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     34   2.91540  3.54122  0.12238  3.44111     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     35   0.14808  3.33460  2.77216  3.23198     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     36   2.91540  3.54122  0.12238  3.44111     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     37   2.91540  3.54122  0.12238  3.44111     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     38   2.91540  3.54122  0.12238  3.44111     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     39   0.14808  3.33460  2.77216  3.23198     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     40   3.04275  2.56593  3.09265  0.18625     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     41   3.38042  0.13667  3.43208  2.79048     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     42   0.14808  3.33460  2.77216  3.23198     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     43   3.04275  2.56593  3.09265  0.18625     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     44   3.04275  2.56593  3.09265  0.18625     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98590  3.98590  1.46634  0.26236  1.09861  0.40547
+     45   2.91540  3.54122  0.12238  3.44111     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01911  3.96715        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Chlorophyta_1_SSU_end_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 23:25:34 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1241919471
+STATS LOCAL MSV       -7.4998  0.72801
+STATS LOCAL VITERBI   -8.1905  0.72801
+STATS LOCAL FORWARD   -3.4574  0.72801
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33801  1.52553  1.31435  1.38040
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Chlorophyta_1_SSU_end_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 23:25:26 2012
+NSEQ  5
+EFFN  3.247070
+CKSUM 1322824676
+STATS LOCAL MSV       -7.9755  0.71931
+STATS LOCAL VITERBI   -7.6686  0.71931
+STATS LOCAL FORWARD   -4.1183  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33346  1.62242  1.24914  1.37727
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  0.00000        *
+      1   0.14518  3.35575  2.78597  3.25510      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      2   3.06393  2.57943  3.11303  0.18271      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      3   3.06393  2.57943  3.11303  0.18271      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      4   3.40484  0.13363  3.45549  2.80837      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      5   2.93035  3.56282  0.11992  3.46492      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      6   3.06393  2.57943  3.11303  0.18271      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      7   0.14518  3.35575  2.78597  3.25510      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      8   0.14518  3.35575  2.78597  3.25510      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      9   3.40484  0.13363  3.45549  2.80837      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     10   0.14518  3.35575  2.78597  3.25510     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     11   0.14518  3.35575  2.78597  3.25510     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     12   2.93035  3.56282  0.11992  3.46492     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     13   2.93035  3.56282  0.11992  3.46492     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     14   3.06393  2.57943  3.11303  0.18271     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     15   3.06393  2.57943  3.11303  0.18271     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     16   3.06393  2.57943  3.11303  0.18271     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     17   3.40484  0.13363  3.45549  2.80837     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     18   3.40484  0.13363  3.45549  2.80837     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     19   2.93035  3.56282  0.11992  3.46492     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     20   3.06393  2.57943  3.11303  0.18271     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     21   0.14518  3.35575  2.78597  3.25510     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     22   2.93035  3.56282  0.11992  3.46492     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     23   2.93035  3.56282  0.11992  3.46492     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     24   3.06393  2.57943  3.11303  0.18271     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     25   2.93035  3.56282  0.11992  3.46492     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     26   0.14518  3.35575  2.78597  3.25510     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     27   0.14518  3.35575  2.78597  3.25510     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     28   3.40484  0.13363  3.45549  2.80837     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     29   3.40484  0.13363  3.45549  2.80837     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     30   3.06393  2.57943  3.11303  0.18271     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     31   2.93035  3.56282  0.11992  3.46492     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     32   3.40484  0.13363  3.45549  2.80837     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     33   2.93035  3.56282  0.11992  3.46492     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     34   2.93035  3.56282  0.11992  3.46492     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     35   0.14518  3.35575  2.78597  3.25510     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     36   0.14518  3.35575  2.78597  3.25510     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     37   2.93035  3.56282  0.11992  3.46492     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     38   2.93035  3.56282  0.11992  3.46492     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     39   0.14518  3.35575  2.78597  3.25510     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     40   3.06393  2.57943  3.11303  0.18271     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     41   3.40484  0.13363  3.45549  2.80837     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     42   0.14518  3.35575  2.78597  3.25510     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     43   3.06393  2.57943  3.11303  0.18271     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     44   3.06393  2.57943  3.11303  0.18271     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     45   2.93035  3.56282  0.11992  3.46492     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97913        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Chlorophyta_1_SSU_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 23:24:57 2012
+NSEQ  4
+EFFN  3.230469
+CKSUM 805615287
+STATS LOCAL MSV       -8.0211  0.71931
+STATS LOCAL VITERBI   -7.6818  0.71931
+STATS LOCAL FORWARD   -4.1105  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27186  1.62653  1.24657  1.44566
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  0.00000        *
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     45   0.14592  3.35028  2.78241  3.24912     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01894  3.97602        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Chlorophyta_1_SSU_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 23:24:49 2012
+NSEQ  14
+EFFN  3.216309
+CKSUM 4158192941
+STATS LOCAL MSV       -7.9726  0.71932
+STATS LOCAL VITERBI   -7.6791  0.71932
+STATS LOCAL FORWARD   -4.0862  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33300  1.62698  1.18954  1.44633
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  0.00000        *
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+      2   2.92319  3.55246  0.12110  3.45350      2 - -
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+     42   0.14656  3.34560  2.77935  3.24400     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     43   3.05375  2.57294  3.10323  0.18440     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     44   3.05375  2.57294  3.10323  0.18440     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     45   2.92319  3.55246  0.12110  3.45350     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01899  3.97336        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/G.hmm.h3f
Binary file ITSx_db/HMMs/G.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/G.hmm.h3i
Binary file ITSx_db/HMMs/G.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/G.hmm.h3m
Binary file ITSx_db/HMMs/G.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/G.hmm.h3p
Binary file ITSx_db/HMMs/G.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/H.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/H.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,3720 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Rhodophyta_58S_end_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 21:56:19 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3310020795
+STATS LOCAL MSV       -7.3962  0.72785
+STATS LOCAL VITERBI   -8.3431  0.72785
+STATS LOCAL FORWARD   -3.4147  0.72785
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39505  1.59495  1.20617  1.38662
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Rhodophyta_58S_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 21:55:52 2012
+NSEQ  4
+EFFN  3.332031
+CKSUM 3304563817
+STATS LOCAL MSV       -8.0466  0.71932
+STATS LOCAL VITERBI   -7.7427  0.71932
+STATS LOCAL FORWARD   -4.1192  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92744  1.42765  1.08593  1.28366
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  0.00000        *
+      1   2.94961  3.59079  0.11683  3.49577      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      2   3.43655  0.12980  3.48587  2.83150      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      3   2.94961  3.59079  0.11683  3.49577      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      4   3.43655  0.12980  3.48587  2.83150      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      5   3.09163  2.59706  3.13967  0.17819      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      6   3.43655  0.12980  3.48587  2.83150      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      7   2.94961  3.59079  0.11683  3.49577      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      8   3.43655  0.12980  3.48587  2.83150      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      9   2.94961  3.59079  0.11683  3.49577      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     10   2.94961  3.59079  0.11683  3.49577     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     11   2.94961  3.59079  0.11683  3.49577     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     12   3.09163  2.59706  3.13967  0.17819     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     13   0.14150  3.38325  2.80387  3.28520     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     14   0.14150  3.38325  2.80387  3.28520     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     15   3.09163  2.59706  3.13967  0.17819     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     16   3.43655  0.12980  3.48587  2.83150     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     17   3.43655  0.12980  3.48587  2.83150     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     18   3.09163  2.59706  3.13967  0.17819     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     19   2.94961  3.59079  0.11683  3.49577     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     20   3.43655  0.12980  3.48587  2.83150     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     21   2.94961  3.59079  0.11683  3.49577     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     22   0.14150  3.38325  2.80387  3.28520     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     23   2.94961  3.59079  0.11683  3.49577     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     24   3.43655  0.12980  3.48587  2.83150     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     25   0.14150  3.38325  2.80387  3.28520     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     26   2.94961  3.59079  0.11683  3.49577     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     27   2.94961  3.59079  0.11683  3.49577     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     28   3.09163  2.59706  3.13967  0.17819     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     29   3.43655  0.12980  3.48587  2.83150     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     30   3.09163  2.59706  3.13967  0.17819     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     31   2.94961  3.59079  0.11683  3.49577     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     32   3.09163  2.59706  3.13967  0.17819     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     33   3.09163  2.59706  3.13967  0.17819     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     34   3.09163  2.59706  3.13967  0.17819     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     35   2.94961  3.59079  0.11683  3.49577     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     36   0.14150  3.38325  2.80387  3.28520     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     37   2.94961  3.59079  0.11683  3.49577     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     38   3.09163  2.59706  3.13967  0.17819     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     39   2.94961  3.59079  0.11683  3.49577     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     40   3.09163  2.59706  3.13967  0.17819     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     41   3.43655  0.12980  3.48587  2.83150     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     42   3.09163  2.59706  3.13967  0.17819     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     43   2.94961  3.59079  0.11683  3.49577     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     44   3.09163  2.59706  3.13967  0.17819     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     45   2.40704  0.95719  2.47912  0.81615     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01858  3.99490        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Rhodophyta_58S_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 21:56:09 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 86740024
+STATS LOCAL MSV       -7.8986  0.72037
+STATS LOCAL VITERBI   -7.8442  0.72037
+STATS LOCAL FORWARD   -4.0185  0.72037
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71607  1.38208  1.25621  1.25722
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   0.15719  3.27118  2.73043  3.16274     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Rhodophyta_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 21:56:01 2012
+NSEQ  34
+EFFN  3.407471
+CKSUM 2094048478
+STATS LOCAL MSV       -7.3795  0.71932
+STATS LOCAL VITERBI   -7.7183  0.71932
+STATS LOCAL FORWARD   -4.1784  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81952  1.29666  1.13881  1.40956
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  0.00000        *
+      1   2.96611  3.61484  0.11424  3.52234      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+      2   3.00826  0.25008  3.07015  2.07568      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+      3   2.96611  3.61484  0.11424  3.52234      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+      4   3.46393  0.12659  3.51207  2.85138      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+      5   3.11571  2.61236  3.16282  0.17437      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+      6   3.46393  0.12659  3.51207  2.85138      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+      7   2.67126  3.47362  0.14439  3.37328      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+      8   3.06101  0.23141  3.12147  2.15715      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+      9   2.96611  3.61484  0.11424  3.52234      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     10   2.96611  3.61484  0.11424  3.52234     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     11   2.96611  3.61484  0.11424  3.52234     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     12   2.64465  0.44934  2.71441  1.49311     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     13   0.13841  3.40703  2.81928  3.31124     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     14   0.13841  3.40703  2.81928  3.31124     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     15   3.11571  2.61236  3.16282  0.17437     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     16   3.46393  0.12659  3.51207  2.85138     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     17   3.46393  0.12659  3.51207  2.85138     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     18   3.11571  2.61236  3.16282  0.17437     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     19   2.96611  3.61484  0.11424  3.52234     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     20   3.46393  0.12659  3.51207  2.85138     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     21   2.96611  3.61484  0.11424  3.52234     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     22   0.13841  3.40703  2.81928  3.31124     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     23   2.96611  3.61484  0.11424  3.52234     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     24   3.46393  0.12659  3.51207  2.85138     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     25   0.13841  3.40703  2.81928  3.31124     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     26   3.11571  2.61236  3.16282  0.17437     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     27   2.96611  3.61484  0.11424  3.52234     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     28   3.11571  2.61236  3.16282  0.17437     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     29   3.46393  0.12659  3.51207  2.85138     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     30   3.11571  2.61236  3.16282  0.17437     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     31   2.96611  3.61484  0.11424  3.52234     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     32   3.11571  2.61236  3.16282  0.17437     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     33   3.11571  2.61236  3.16282  0.17437     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     34   3.11571  2.61236  3.16282  0.17437     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     35   2.96611  3.61484  0.11424  3.52234     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     36   0.13841  3.40703  2.81928  3.31124     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     37   2.96611  3.61484  0.11424  3.52234     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     38   3.11571  2.61236  3.16282  0.17437     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     39   2.96611  3.61484  0.11424  3.52234     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     40   3.11571  2.61236  3.16282  0.17437     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     41   3.46393  0.12659  3.51207  2.85138     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     42   3.46393  0.12659  3.51207  2.85138     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     43   2.96611  3.61484  0.11424  3.52234     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     44   3.20481  0.18755  3.26108  2.38493     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02668  4.02668  1.46634  0.26236  1.09861  0.40547
+     45   0.13841  3.40703  2.81928  3.31124     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01832  4.00869        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhodophyta_58S_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 21:42:52 2012
+NSEQ  4
+EFFN  3.175781
+CKSUM 3810186819
+STATS LOCAL MSV       -8.1688  0.71933
+STATS LOCAL VITERBI   -7.7118  0.71933
+STATS LOCAL FORWARD   -4.1218  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40693  1.26714  1.31628  1.58309
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  0.00000        *
+      1   3.37748  0.13704  3.42926  2.78832      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      2   2.91360  3.53861  0.12268  3.43825      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      3   0.14843  3.33206  2.77050  3.22920      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      4   3.37748  0.13704  3.42926  2.78832      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      5   3.37748  0.13704  3.42926  2.78832      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      6   3.37748  0.13704  3.42926  2.78832      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      7   2.91360  3.53861  0.12268  3.43825      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      8   3.04021  2.56430  3.09020  0.18668      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      9   0.14843  3.33206  2.77050  3.22920      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     10   0.14843  3.33206  2.77050  3.22920     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     11   3.04021  2.56430  3.09020  0.18668     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     12   2.91360  3.53861  0.12268  3.43825     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     13   2.91360  3.53861  0.12268  3.43825     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     14   3.04021  2.56430  3.09020  0.18668     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     15   2.91360  3.53861  0.12268  3.43825     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     16   2.91360  3.53861  0.12268  3.43825     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     17   0.14843  3.33206  2.77050  3.22920     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     18   3.04021  2.56430  3.09020  0.18668     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     19   2.91360  3.53861  0.12268  3.43825     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     20   3.04021  2.56430  3.09020  0.18668     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     21   3.37748  0.13704  3.42926  2.78832     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     22   3.04021  2.56430  3.09020  0.18668     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     23   3.37748  0.13704  3.42926  2.78832     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     24   2.91360  3.53861  0.12268  3.43825     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     25   2.91360  3.53861  0.12268  3.43825     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     26   3.37748  0.13704  3.42926  2.78832     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     27   3.04021  2.56430  3.09020  0.18668     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     28   3.37748  0.13704  3.42926  2.78832     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     29   3.37748  0.13704  3.42926  2.78832     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     30   3.37748  0.13704  3.42926  2.78832     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     31   0.14843  3.33206  2.77050  3.22920     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     32   3.37748  0.13704  3.42926  2.78832     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     33   0.14843  3.33206  2.77050  3.22920     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     34   3.04021  2.56430  3.09020  0.18668     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     35   3.37748  0.13704  3.42926  2.78832     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     36   2.91360  3.53861  0.12268  3.43825     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     37   0.14843  3.33206  2.77050  3.22920     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     38   3.04021  2.56430  3.09020  0.18668     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     39   2.91360  3.53861  0.12268  3.43825     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     40   0.14843  3.33206  2.77050  3.22920     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     41   0.14843  3.33206  2.77050  3.22920     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     42   2.91360  3.53861  0.12268  3.43825     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     43   0.14843  3.33206  2.77050  3.22920     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     44   0.14843  3.33206  2.77050  3.22920     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     45   3.37748  0.13704  3.42926  2.78832     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01914  3.96571        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhodophyta_58S_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 21:44:17 2012
+NSEQ  4
+EFFN  3.324219
+CKSUM 2806458298
+STATS LOCAL MSV       -8.2402  0.71932
+STATS LOCAL VITERBI   -7.5865  0.71932
+STATS LOCAL FORWARD   -3.9489  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16164  1.28185  1.60749  1.56488
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  0.00000        *
+      1   2.63347  0.44817  2.70341  1.50328      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      2   0.14183  3.38076  2.80224  3.28247      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      3   0.14183  3.38076  2.80224  3.28247      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      4   3.43368  0.13014  3.48311  2.82941      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      5   3.08911  2.59546  3.13724  0.17860      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      6   3.43368  0.13014  3.48311  2.82941      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      7   3.08911  2.59546  3.13724  0.17860      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      8   3.43368  0.13014  3.48311  2.82941      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      9   0.14183  3.38076  2.80224  3.28247      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     10   0.14183  3.38076  2.80224  3.28247     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     11   3.43368  0.13014  3.48311  2.82941     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     12   0.14183  3.38076  2.80224  3.28247     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     13   0.14183  3.38076  2.80224  3.28247     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     14   3.43368  0.13014  3.48311  2.82941     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     15   2.94787  3.58826  0.11710  3.49298     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     16   2.94787  3.58826  0.11710  3.49298     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     17   0.14183  3.38076  2.80224  3.28247     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     18   3.08911  2.59546  3.13724  0.17860     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     19   0.14183  3.38076  2.80224  3.28247     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     20   3.08911  2.59546  3.13724  0.17860     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     21   3.43368  0.13014  3.48311  2.82941     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     22   3.08911  2.59546  3.13724  0.17860     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     23   3.08911  2.59546  3.13724  0.17860     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     24   2.94787  3.58826  0.11710  3.49298     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     25   2.94787  3.58826  0.11710  3.49298     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     26   3.43368  0.13014  3.48311  2.82941     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     27   3.08911  2.59546  3.13724  0.17860     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     28   3.43368  0.13014  3.48311  2.82941     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     29   3.08911  2.59546  3.13724  0.17860     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     30   3.43368  0.13014  3.48311  2.82941     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     31   2.94787  3.58826  0.11710  3.49298     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     32   3.43368  0.13014  3.48311  2.82941     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     33   0.14183  3.38076  2.80224  3.28247     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     34   0.14183  3.38076  2.80224  3.28247     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     35   3.43368  0.13014  3.48311  2.82941     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     36   2.94787  3.58826  0.11710  3.49298     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     37   0.14183  3.38076  2.80224  3.28247     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     38   3.08911  2.59546  3.13724  0.17860     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     39   2.94787  3.58826  0.11710  3.49298     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     40   0.14183  3.38076  2.80224  3.28247     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     41   0.14183  3.38076  2.80224  3.28247     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     42   2.94787  3.58826  0.11710  3.49298     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     43   0.14183  3.38076  2.80224  3.28247     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     44   0.14183  3.38076  2.80224  3.28247     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     45   3.43368  0.13014  3.48311  2.82941     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01861  3.99346        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhodophyta_58S_start_twoa_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 21:43:01 2012
+NSEQ  4
+EFFN  3.363281
+CKSUM 3693864443
+STATS LOCAL MSV       -8.0312  0.71931
+STATS LOCAL VITERBI   -7.6530  0.71931
+STATS LOCAL FORWARD   -4.6865  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.30997  1.36794  1.37527  1.50161
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  0.00000        *
+      1   0.94201  1.03323  2.14067  1.98979      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      2   0.14020  3.39317  2.81030  3.29606      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      3   0.14020  3.39317  2.81030  3.29606      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      4   3.44798  0.12845  3.49681  2.83981      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      5   3.10166  2.60344  3.14932  0.17659      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      6   3.44798  0.12845  3.49681  2.83981      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      7   2.95651  3.60084  0.11574  3.50687      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      8   3.10166  2.60344  3.14932  0.17659      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      9   0.14020  3.39317  2.81030  3.29606      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     10   0.14020  3.39317  2.81030  3.29606     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     11   3.44798  0.12845  3.49681  2.83981     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     12   2.95651  3.60084  0.11574  3.50687     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     13   2.95651  3.60084  0.11574  3.50687     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     14   3.10166  2.60344  3.14932  0.17659     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     15   2.95651  3.60084  0.11574  3.50687     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     16   2.95651  3.60084  0.11574  3.50687     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     17   0.14020  3.39317  2.81030  3.29606     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     18   3.10166  2.60344  3.14932  0.17659     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     19   2.95651  3.60084  0.11574  3.50687     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     20   3.10166  2.60344  3.14932  0.17659     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     21   3.44798  0.12845  3.49681  2.83981     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     22   3.10166  2.60344  3.14932  0.17659     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     23   3.10166  2.60344  3.14932  0.17659     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     24   2.95651  3.60084  0.11574  3.50687     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     25   2.95651  3.60084  0.11574  3.50687     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     26   3.44798  0.12845  3.49681  2.83981     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     27   3.10166  2.60344  3.14932  0.17659     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     28   3.44798  0.12845  3.49681  2.83981     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     29   3.44798  0.12845  3.49681  2.83981     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     30   3.44798  0.12845  3.49681  2.83981     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     31   0.14020  3.39317  2.81030  3.29606     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     32   3.44798  0.12845  3.49681  2.83981     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     33   0.14020  3.39317  2.81030  3.29606     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     34   3.10166  2.60344  3.14932  0.17659     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     35   3.44798  0.12845  3.49681  2.83981     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     36   2.95651  3.60084  0.11574  3.50687     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     37   0.14020  3.39317  2.81030  3.29606     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     38   3.10166  2.60344  3.14932  0.17659     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     39   2.95651  3.60084  0.11574  3.50687     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     40   0.14020  3.39317  2.81030  3.29606     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     41   0.14020  3.39317  2.81030  3.29606     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     42   2.95651  3.60084  0.11574  3.50687     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     43   0.14020  3.39317  2.81030  3.29606     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     44   0.14020  3.39317  2.81030  3.29606     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     45   3.44798  0.12845  3.49681  2.83981     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01847  4.00063        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhodophyta_58S_start_twob_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 21:43:07 2012
+NSEQ  17
+EFFN  3.399170
+CKSUM 1249095045
+STATS LOCAL MSV       -7.3126  0.71931
+STATS LOCAL VITERBI   -7.5101  0.71931
+STATS LOCAL FORWARD   -4.2778  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26013  1.46710  1.22336  1.65261
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  0.00000        *
+      1   0.13874  3.40444  2.81761  3.30841      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+      2   0.13874  3.40444  2.81761  3.30841      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+      3   0.13874  3.40444  2.81761  3.30841      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+      4   3.46095  0.12694  3.50922  2.84922      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+      5   3.11308  2.61070  3.16030  0.17478      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+      6   3.46095  0.12694  3.50922  2.84922      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+      7   2.96432  3.61223  0.11452  3.51946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+      8   3.11308  2.61070  3.16030  0.17478      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+      9   2.96432  3.61223  0.11452  3.51946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     10   0.13874  3.40444  2.81761  3.30841     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     11   3.46095  0.12694  3.50922  2.84922     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     12   2.96432  3.61223  0.11452  3.51946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     13   2.96432  3.61223  0.11452  3.51946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     14   3.11308  2.61070  3.16030  0.17478     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     15   2.96432  3.61223  0.11452  3.51946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     16   2.96432  3.61223  0.11452  3.51946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     17   0.13874  3.40444  2.81761  3.30841     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     18   3.11308  2.61070  3.16030  0.17478     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     19   2.96432  3.61223  0.11452  3.51946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     20   3.11308  2.61070  3.16030  0.17478     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     21   3.46095  0.12694  3.50922  2.84922     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     22   3.11308  2.61070  3.16030  0.17478     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     23   0.50827  2.40841  2.29505  1.57141     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     24   2.96432  3.61223  0.11452  3.51946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     25   2.96432  3.61223  0.11452  3.51946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     26   3.46095  0.12694  3.50922  2.84922     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     27   3.11308  2.61070  3.16030  0.17478     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     28   3.46095  0.12694  3.50922  2.84922     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     29   3.46095  0.12694  3.50922  2.84922     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     30   0.77807  2.53217  0.99592  2.38768     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     31   2.96432  3.61223  0.11452  3.51946     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     32   3.46095  0.12694  3.50922  2.84922     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     33   0.13874  3.40444  2.81761  3.30841     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     34   0.13874  3.40444  2.81761  3.30841     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     35   3.46095  0.12694  3.50922  2.84922     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     36   2.96432  3.61223  0.11452  3.51946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     37   0.13874  3.40444  2.81761  3.30841     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     38   3.11308  2.61070  3.16030  0.17478     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     39   2.96432  3.61223  0.11452  3.51946     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     40   0.13874  3.40444  2.81761  3.30841     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     41   0.13874  3.40444  2.81761  3.30841     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     42   2.96432  3.61223  0.11452  3.51946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     43   0.13874  3.40444  2.81761  3.30841     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     44   0.13874  3.40444  2.81761  3.30841     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03637  4.02520  4.02520  1.46634  0.26236  1.09861  0.40547
+     45   3.46095  0.12694  3.50922  2.84922     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01835  4.00718        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhodophyta_58S_start_twoc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 21:43:14 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 361171468
+STATS LOCAL MSV       -7.5783  0.72809
+STATS LOCAL VITERBI   -8.1252  0.72809
+STATS LOCAL FORWARD   -3.2306  0.72809
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26706  1.29688  1.35098  1.68215
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   0.23862  2.84929  2.43386  2.70756     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.92825  2.28391  0.95698  2.13014     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhodophyta_58S_start_twod_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 21:43:28 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3586106311
+STATS LOCAL MSV       -8.0967  0.72012
+STATS LOCAL VITERBI   -7.6587  0.72012
+STATS LOCAL FORWARD   -4.5849  0.72012
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27863  1.33133  1.37926  1.58138
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhodophyta_58S_start_twoe_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 21:43:35 2012
+NSEQ  6
+EFFN  3.202148
+CKSUM 2099097258
+STATS LOCAL MSV       -8.0529  0.71932
+STATS LOCAL VITERBI   -7.6277  0.71932
+STATS LOCAL FORWARD   -4.5099  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21596  1.39906  1.37774  1.58670
+          1.38629  1.38629  1.38629  1.38629
+          0.03773  3.98938  3.98938  1.46634  0.26236  0.00000        *
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+     45   3.38768  0.13576  3.43904  2.79581     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01904  3.97070        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhodophyta_58S_start_twof_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 21:43:44 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 538168776
+STATS LOCAL MSV       -7.5903  0.72774
+STATS LOCAL VITERBI   -8.2624  0.72774
+STATS LOCAL FORWARD   -3.7407  0.72774
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28897  1.34866  1.37416  1.55209
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhodophyta_58S_start_twog_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 21:43:53 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 433536473
+STATS LOCAL MSV       -7.5756  0.72824
+STATS LOCAL VITERBI   -8.2789  0.72824
+STATS LOCAL FORWARD   -3.5811  0.72824
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33746  1.38280  1.31433  1.52346
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.15554  1.00938  2.23102  0.88601     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   0.23862  2.84929  2.43386  2.70756     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhodophyta_58S_start_twoh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 21:44:05 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 629811214
+STATS LOCAL MSV       -7.3522  0.72804
+STATS LOCAL VITERBI   -8.2940  0.72804
+STATS LOCAL FORWARD   -3.7313  0.72804
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34240  1.34077  1.43638  1.42982
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhodophyta_4_LSU_start_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:10:04 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4069474395
+STATS LOCAL MSV       -7.4758  0.72803
+STATS LOCAL VITERBI   -8.1006  0.72803
+STATS LOCAL FORWARD   -3.3098  0.72803
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.19186  1.40481  1.49426  1.48495
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhodophyta_4_LSU_start_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:09:48 2012
+NSEQ  40
+EFFN  3.276367
+CKSUM 565607296
+STATS LOCAL MSV       -8.0920  0.71934
+STATS LOCAL VITERBI   -7.6656  0.71934
+STATS LOCAL FORWARD   -3.9440  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11205  1.39822  1.60365  1.50094
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  0.00000        *
+      1   3.07355  2.58556  3.12228  0.18112      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      2   3.07355  2.58556  3.12228  0.18112      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      3   3.07355  2.58556  3.12228  0.18112      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      4   2.93708  3.57257  0.11883  3.47567      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      5   2.93708  3.57257  0.11883  3.47567      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      6   0.14388  3.36532  2.79221  3.26557      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      7   3.07355  2.58556  3.12228  0.18112      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      8   3.41588  0.13228  3.46607  2.81644      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+      9   3.07355  2.58556  3.12228  0.18112      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     10   3.41588  0.13228  3.46607  2.81644     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     11   0.14388  3.36532  2.79221  3.26557     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     12   0.14388  3.36532  2.79221  3.26557     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     13   0.14388  3.36532  2.79221  3.26557     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     14   3.07355  2.58556  3.12228  0.18112     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     15   3.41588  0.13228  3.46607  2.81644     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     16   0.14388  3.36532  2.79221  3.26557     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     17   2.93708  3.57257  0.11883  3.47567     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     18   0.14388  3.36532  2.79221  3.26557     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     19   3.19001  0.18613  3.24682  2.41058     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     20   0.14388  3.36532  2.79221  3.26557     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     21   0.14388  3.36532  2.79221  3.26557     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     22   2.93708  3.57257  0.11883  3.47567     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     23   0.14388  3.36532  2.79221  3.26557     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     24   3.41588  0.13228  3.46607  2.81644     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     25   2.93708  3.57257  0.11883  3.47567     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     26   0.14388  3.36532  2.79221  3.26557     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     27   3.41588  0.13228  3.46607  2.81644     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     28   3.41588  0.13228  3.46607  2.81644     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     29   3.41588  0.13228  3.46607  2.81644     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     30   2.93708  3.57257  0.11883  3.47567     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     31   3.41588  0.13228  3.46607  2.81644     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     32   3.07355  2.58556  3.12228  0.18112     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     33   2.93708  3.57257  0.11883  3.47567     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     34   0.14388  3.36532  2.79221  3.26557     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     35   0.14388  3.36532  2.79221  3.26557     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     36   3.41588  0.13228  3.46607  2.81644     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     37   3.07355  2.58556  3.12228  0.18112     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     38   3.07355  2.58556  3.12228  0.18112     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     39   0.14388  3.36532  2.79221  3.26557     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     40   0.14388  3.36532  2.79221  3.26557     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     41   2.93708  3.57257  0.11883  3.47567     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     42   3.41588  0.13228  3.46607  2.81644     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     43   0.14388  3.36532  2.79221  3.26557     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     44   3.07355  2.58556  3.12228  0.18112     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00303  4.00303  1.46634  0.26236  1.09861  0.40547
+     45   0.14388  3.36532  2.79221  3.26557     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01878  3.98460        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhodophyta_4_LSU_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:09:23 2012
+NSEQ  10
+EFFN  3.305664
+CKSUM 3245122891
+STATS LOCAL MSV       -8.3526  0.71932
+STATS LOCAL VITERBI   -7.6782  0.71932
+STATS LOCAL FORWARD   -3.9655  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11041  1.53680  1.60255  1.36992
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  0.00000        *
+      1   3.08310  2.59163  3.13146  0.17957      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      2   3.08310  2.59163  3.13146  0.17957      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      3   3.08310  2.59163  3.13146  0.17957      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      4   2.94371  3.58221  0.11777  3.48630      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      5   2.94371  3.58221  0.11777  3.48630      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      6   0.14262  3.37480  2.79837  3.27595      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      7   3.08310  2.59163  3.13146  0.17957      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      8   3.42681  0.13096  3.47654  2.82441      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      9   3.08310  2.59163  3.13146  0.17957      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     10   3.42681  0.13096  3.47654  2.82441     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     11   0.14262  3.37480  2.79837  3.27595     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     12   0.14262  3.37480  2.79837  3.27595     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     13   0.14262  3.37480  2.79837  3.27595     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     14   3.08310  2.59163  3.13146  0.17957     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     15   3.42681  0.13096  3.47654  2.82441     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     16   0.14262  3.37480  2.79837  3.27595     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     17   2.94371  3.58221  0.11777  3.48630     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     18   0.14262  3.37480  2.79837  3.27595     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     19   3.42681  0.13096  3.47654  2.82441     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     20   0.14262  3.37480  2.79837  3.27595     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     21   0.14262  3.37480  2.79837  3.27595     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     22   2.94371  3.58221  0.11777  3.48630     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     23   0.14262  3.37480  2.79837  3.27595     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     24   3.08310  2.59163  3.13146  0.17957     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     25   2.94371  3.58221  0.11777  3.48630     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     26   0.14262  3.37480  2.79837  3.27595     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     27   3.42681  0.13096  3.47654  2.82441     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     28   3.42681  0.13096  3.47654  2.82441     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     29   3.42681  0.13096  3.47654  2.82441     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     30   2.94371  3.58221  0.11777  3.48630     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     31   3.42681  0.13096  3.47654  2.82441     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     32   3.08310  2.59163  3.13146  0.17957     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     33   2.94371  3.58221  0.11777  3.48630     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     34   0.14262  3.37480  2.79837  3.27595     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     35   0.14262  3.37480  2.79837  3.27595     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     36   3.08310  2.59163  3.13146  0.17957     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     37   3.08310  2.59163  3.13146  0.17957     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     38   3.08310  2.59163  3.13146  0.17957     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     39   0.14262  3.37480  2.79837  3.27595     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     40   0.14262  3.37480  2.79837  3.27595     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     41   2.94371  3.58221  0.11777  3.48630     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     42   3.42681  0.13096  3.47654  2.82441     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     43   0.14262  3.37480  2.79837  3.27595     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     44   3.08310  2.59163  3.13146  0.17957     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     45   0.14262  3.37480  2.79837  3.27595     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01867  3.99003        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhodophyta_4_LSU_start_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:10:12 2012
+NSEQ  10
+EFFN  3.305664
+CKSUM 3245122891
+STATS LOCAL MSV       -8.3526  0.71932
+STATS LOCAL VITERBI   -7.6782  0.71932
+STATS LOCAL FORWARD   -3.9655  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11041  1.53680  1.60255  1.36992
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  0.00000        *
+      1   3.08310  2.59163  3.13146  0.17957      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      2   3.08310  2.59163  3.13146  0.17957      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      3   3.08310  2.59163  3.13146  0.17957      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      4   2.94371  3.58221  0.11777  3.48630      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      5   2.94371  3.58221  0.11777  3.48630      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      6   0.14262  3.37480  2.79837  3.27595      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      7   3.08310  2.59163  3.13146  0.17957      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      8   3.42681  0.13096  3.47654  2.82441      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+      9   3.08310  2.59163  3.13146  0.17957      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     10   3.42681  0.13096  3.47654  2.82441     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     11   0.14262  3.37480  2.79837  3.27595     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     12   0.14262  3.37480  2.79837  3.27595     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     13   0.14262  3.37480  2.79837  3.27595     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     14   3.08310  2.59163  3.13146  0.17957     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     15   3.42681  0.13096  3.47654  2.82441     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     16   0.14262  3.37480  2.79837  3.27595     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     17   2.94371  3.58221  0.11777  3.48630     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     18   0.14262  3.37480  2.79837  3.27595     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     19   3.42681  0.13096  3.47654  2.82441     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     20   0.14262  3.37480  2.79837  3.27595     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     21   0.14262  3.37480  2.79837  3.27595     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     22   2.94371  3.58221  0.11777  3.48630     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     23   0.14262  3.37480  2.79837  3.27595     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     24   3.08310  2.59163  3.13146  0.17957     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     25   2.94371  3.58221  0.11777  3.48630     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     26   0.14262  3.37480  2.79837  3.27595     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     27   3.42681  0.13096  3.47654  2.82441     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     28   3.42681  0.13096  3.47654  2.82441     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     29   3.42681  0.13096  3.47654  2.82441     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     30   2.94371  3.58221  0.11777  3.48630     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     31   3.42681  0.13096  3.47654  2.82441     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     32   3.08310  2.59163  3.13146  0.17957     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     33   2.94371  3.58221  0.11777  3.48630     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     34   0.14262  3.37480  2.79837  3.27595     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     35   0.14262  3.37480  2.79837  3.27595     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     36   3.08310  2.59163  3.13146  0.17957     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     37   3.08310  2.59163  3.13146  0.17957     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     38   3.08310  2.59163  3.13146  0.17957     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     39   0.14262  3.37480  2.79837  3.27595     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     40   0.14262  3.37480  2.79837  3.27595     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     41   2.94371  3.58221  0.11777  3.48630     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     42   3.42681  0.13096  3.47654  2.82441     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     43   0.14262  3.37480  2.79837  3.27595     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     44   3.08310  2.59163  3.13146  0.17957     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  1.09861  0.40547
+     45   0.14262  3.37480  2.79837  3.27595     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01867  3.99003        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhodophyta_4_LSU_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:09:39 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2901651986
+STATS LOCAL MSV       -8.1984  0.72045
+STATS LOCAL VITERBI   -7.6948  0.72045
+STATS LOCAL FORWARD   -3.8288  0.72045
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11685  1.46208  1.59584  1.43465
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhodophyta_4_LSU_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 22:09:31 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1115734847
+STATS LOCAL MSV       -8.1731  0.72021
+STATS LOCAL VITERBI   -7.6315  0.72021
+STATS LOCAL FORWARD   -3.7687  0.72021
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11609  1.47103  1.43683  1.58438
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Rhodophyta_1_SSU_end_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 21:06:17 2012
+NSEQ  95
+EFFN  3.348541
+CKSUM 2011377772
+STATS LOCAL MSV       -7.9892  0.71931
+STATS LOCAL VITERBI   -7.7135  0.71931
+STATS LOCAL FORWARD   -4.1047  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.32905  1.53799  1.25544  1.44601
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  0.00000        *
+      1   0.14081  3.38851  2.80728  3.29095      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+      2   2.95327  3.59611  0.11625  3.50165      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+      3   3.09694  2.60044  3.14477  0.17734      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+      4   3.44261  0.12908  3.49166  2.83591      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+      5   2.95327  3.59611  0.11625  3.50165      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+      6   3.09694  2.60044  3.14477  0.17734      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+      7   0.14081  3.38851  2.80728  3.29095      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+      8   0.14081  3.38851  2.80728  3.29095      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+      9   3.44261  0.12908  3.49166  2.83591      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     10   0.14081  3.38851  2.80728  3.29095     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     11   0.14081  3.38851  2.80728  3.29095     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     12   2.95327  3.59611  0.11625  3.50165     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     13   2.95327  3.59611  0.11625  3.50165     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.09712  4.01612  2.59653  1.46634  0.26236  1.09861  0.40547
+     14   2.64581  2.38647  2.37397  0.29573     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03895  3.95795  3.95795  1.46634  0.26236  0.39449  1.12093
+     15   3.09694  2.60044  3.14477  0.17734     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     16   3.09694  2.60044  3.14477  0.17734     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     17   3.44261  0.12908  3.49166  2.83591     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     18   3.44261  0.12908  3.49166  2.83591     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     19   2.95327  3.59611  0.11625  3.50165     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     20   3.09694  2.60044  3.14477  0.17734     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     21   0.14081  3.38851  2.80728  3.29095     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     22   2.95327  3.59611  0.11625  3.50165     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     23   2.95327  3.59611  0.11625  3.50165     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     24   3.09694  2.60044  3.14477  0.17734     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     25   2.95327  3.59611  0.11625  3.50165     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     26   0.14081  3.38851  2.80728  3.29095     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     27   0.14081  3.38851  2.80728  3.29095     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     28   3.44261  0.12908  3.49166  2.83591     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     29   3.44261  0.12908  3.49166  2.83591     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     30   3.09694  2.60044  3.14477  0.17734     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     31   2.49053  2.77369  0.31322  2.09058     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     32   3.44261  0.12908  3.49166  2.83591     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     33   2.95327  3.59611  0.11625  3.50165     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     34   2.95327  3.59611  0.11625  3.50165     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     35   0.14081  3.38851  2.80728  3.29095     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     36   0.14081  3.38851  2.80728  3.29095     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     37   2.95327  3.59611  0.11625  3.50165     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     38   2.95327  3.59611  0.11625  3.50165     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     39   0.14081  3.38851  2.80728  3.29095     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     40   3.09694  2.60044  3.14477  0.17734     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     41   3.44261  0.12908  3.49166  2.83591     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     42   0.14081  3.38851  2.80728  3.29095     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     43   3.09694  2.60044  3.14477  0.17734     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     44   3.09694  2.60044  3.14477  0.17734     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01612  4.01612  1.46634  0.26236  1.09861  0.40547
+     45   3.44261  0.12908  3.49166  2.83591     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01852  3.99793        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Rhodophyta_58S_end_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Nov 16 22:26:26 2012
+NSEQ  17
+EFFN  3.258057
+CKSUM 99854956
+STATS LOCAL MSV       -7.9161  0.71933
+STATS LOCAL VITERBI   -7.6864  0.71933
+STATS LOCAL FORWARD   -4.2261  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82088  1.31276  1.14101  1.38812
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  0.00000        *
+      1   2.93288  3.56649  0.11951  3.46896      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+      2   3.40899  0.13312  3.45947  2.81141      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+      3   2.93288  3.56649  0.11951  3.46896      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+      4   3.40899  0.13312  3.45947  2.81141      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+      5   3.06755  2.58173  3.11650  0.18211      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+      6   3.40899  0.13312  3.45947  2.81141      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+      7   2.93288  3.56649  0.11951  3.46896      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+      8   3.40899  0.13312  3.45947  2.81141      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+      9   2.93288  3.56649  0.11951  3.46896      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     10   2.93288  3.56649  0.11951  3.46896     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     11   2.93288  3.56649  0.11951  3.46896     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     12   3.06755  2.58173  3.11650  0.18211     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     13   0.14469  3.35935  2.78832  3.25904     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     14   0.14469  3.35935  2.78832  3.25904     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     15   3.40899  0.13312  3.45947  2.81141     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     16   3.40899  0.13312  3.45947  2.81141     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     17   3.40899  0.13312  3.45947  2.81141     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     18   3.06755  2.58173  3.11650  0.18211     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     19   2.93288  3.56649  0.11951  3.46896     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     20   3.40899  0.13312  3.45947  2.81141     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     21   2.93288  3.56649  0.11951  3.46896     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     22   0.14469  3.35935  2.78832  3.25904     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     23   2.93288  3.56649  0.11951  3.46896     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     24   3.40899  0.13312  3.45947  2.81141     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     25   0.14469  3.35935  2.78832  3.25904     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     26   3.06755  2.58173  3.11650  0.18211     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     27   2.93288  3.56649  0.11951  3.46896     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     28   3.06755  2.58173  3.11650  0.18211     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     29   3.40899  0.13312  3.45947  2.81141     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     30   3.06755  2.58173  3.11650  0.18211     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     31   2.93288  3.56649  0.11951  3.46896     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     32   3.06755  2.58173  3.11650  0.18211     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     33   3.06755  2.58173  3.11650  0.18211     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     34   3.06755  2.58173  3.11650  0.18211     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     35   2.93288  3.56649  0.11951  3.46896     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     36   0.14469  3.35935  2.78832  3.25904     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     37   2.93288  3.56649  0.11951  3.46896     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     38   2.60196  1.60547  2.66720  0.42216     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     39   2.93288  3.56649  0.11951  3.46896     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     40   3.06755  2.58173  3.11650  0.18211     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     41   3.40899  0.13312  3.45947  2.81141     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     42   3.40899  0.13312  3.45947  2.81141     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     43   2.93288  3.56649  0.11951  3.46896     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     44   3.06755  2.58173  3.11650  0.18211     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99968  3.99968  1.46634  0.26236  1.09861  0.40547
+     45   0.14469  3.35935  2.78832  3.25904     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01884  3.98119        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Rhodophyta_58S_end_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Nov 16 22:25:48 2012
+NSEQ  7
+EFFN  3.305176
+CKSUM 4199574871
+STATS LOCAL MSV       -8.1908  0.71932
+STATS LOCAL VITERBI   -7.8570  0.71932
+STATS LOCAL FORWARD   -4.1151  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92875  1.60184  1.14085  1.09782
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00827  4.00827  1.46634  0.26236  0.00000        *
+      1   2.94360  3.58205  0.11779  3.48613      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
+      2   3.42663  0.13098  3.47636  2.82428      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
+      3   3.08294  2.59153  3.13131  0.17959      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
+      4   3.42663  0.13098  3.47636  2.82428      4 - -
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+     44   3.08294  2.59153  3.13131  0.17959     44 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   3.08294  2.59153  3.13131  0.17959     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01867  3.98994        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Rhodophyta_58S_end_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Nov 16 22:25:59 2012
+NSEQ  7
+EFFN  3.264160
+CKSUM 2681386467
+STATS LOCAL MSV       -7.8266  0.71931
+STATS LOCAL VITERBI   -7.7527  0.71931
+STATS LOCAL FORWARD   -4.1975  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72557  1.38143  1.25532  1.25273
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  0.00000        *
+      1   2.93428  3.56852  0.11929  3.47120      1 - -
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+      2   3.41129  0.13284  3.46167  2.81309      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      3   2.93428  3.56852  0.11929  3.47120      3 - -
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+     45   3.06955  2.58301  3.11843  0.18178     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01882  3.98232        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/H.hmm.h3f
Binary file ITSx_db/HMMs/H.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/H.hmm.h3i
Binary file ITSx_db/HMMs/H.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/H.hmm.h3m
Binary file ITSx_db/HMMs/H.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/H.hmm.h3p
Binary file ITSx_db/HMMs/H.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/I.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/I.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,775 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Phaeophyceae_58S_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 12:12:36 2012
+NSEQ  157
+EFFN  3.732391
+CKSUM 82106143
+STATS LOCAL MSV       -6.9907  0.71931
+STATS LOCAL VITERBI   -7.6013  0.71931
+STATS LOCAL FORWARD   -3.9860  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.91751  1.41520  1.11917  1.26019
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  0.00000        *
+      1   3.57378  0.11461  3.61706  2.93034      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+      2   3.03127  3.71067  0.10455  3.62844      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+      3   3.57378  0.11461  3.61706  2.93034      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+      4   3.21417  2.67481  3.25746  0.15969      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+      5   3.21417  2.67481  3.25746  0.15969      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+      6   3.57378  0.11461  3.61706  2.93034      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+      7   3.57378  0.11461  3.61706  2.93034      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+      8   3.03127  3.71067  0.10455  3.62844      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+      9   3.03127  3.71067  0.10455  3.62844      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     10   3.03127  3.71067  0.10455  3.62844     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04253  4.08301  3.69765  1.46634  0.26236  1.09861  0.40547
+     11   0.15619  3.32897  2.80495  3.03107     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03457  4.07506  4.07506  1.46634  0.26236  0.85884  0.55105
+     12   1.83744  2.35418  2.56143  0.40256     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     13   0.12671  3.50290  2.88107  3.41642     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     14   2.61652  1.41576  2.68268  0.48480     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     15   2.01308  1.45171  1.26036  1.05354     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     16   3.57378  0.11461  3.61706  2.93034     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     17   3.57378  0.11461  3.61706  2.93034     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     18   3.14605  2.49866  3.19205  0.18189     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     19   3.03127  3.71067  0.10455  3.62844     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     20   3.03127  3.71067  0.10455  3.62844     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     21   3.03127  3.71067  0.10455  3.62844     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     22   0.12671  3.50290  2.88107  3.41642     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     23   2.90108  3.65700  0.11528  3.57161     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     24   3.57378  0.11461  3.61706  2.93034     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     25   0.12671  3.50290  2.88107  3.41642     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     26   3.21417  2.67481  3.25746  0.15969     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     27   3.03127  3.71067  0.10455  3.62844     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     28   3.57378  0.11461  3.61706  2.93034     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     29   3.21417  2.67481  3.25746  0.15969     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     30   3.21417  2.67481  3.25746  0.15969     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     31   3.03127  3.71067  0.10455  3.62844     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     32   3.21417  2.67481  3.25746  0.15969     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     33   3.35782  0.16081  3.40896  2.51757     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     34   3.03127  3.71067  0.10455  3.62844     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     35   3.03127  3.71067  0.10455  3.62844     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     36   0.12671  3.50290  2.88107  3.41642     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     37   3.03127  3.71067  0.10455  3.62844     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     38   3.21417  2.67481  3.25746  0.15969     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     39   3.03127  3.71067  0.10455  3.62844     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     40   3.21417  2.67481  3.25746  0.15969     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     41   3.57378  0.11461  3.61706  2.93034     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     42   3.16360  2.54221  3.20887  0.17598     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     43   2.85217  3.63521  0.11976  3.54831     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     44   3.03385  2.24171  3.08462  0.22333     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03429  4.08301  4.08301  1.46634  0.26236  1.09861  0.40547
+     45   2.90903  2.47911  3.09147  0.20307     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01729  4.06601        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Phaeophyceae_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Oct  9 00:13:57 2011
+NSEQ  4
+EFFN  3.082031
+CKSUM 3550826365
+STATS LOCAL MSV       -8.1048  0.71931
+STATS LOCAL VITERBI   -7.8658  0.71931
+STATS LOCAL FORWARD   -3.8411  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71271  1.47634  0.90619  1.67615
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  0.00000        *
+      1   3.34045  0.14183  3.39374  2.76103      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+      2   2.89070  3.50572  0.12655  3.40205      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+      3   3.34045  0.14183  3.39374  2.76103      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+      4   3.00834  2.54393  3.05952  0.19218      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+      5   3.34045  0.14183  3.39374  2.76103      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+      6   3.34045  0.14183  3.39374  2.76103      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+      7   3.34045  0.14183  3.39374  2.76103      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+      8   2.89070  3.50572  0.12655  3.40205      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+      9   2.89070  3.50572  0.12655  3.40205      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     10   2.89070  3.50572  0.12655  3.40205     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     11   0.15297  3.30004  2.74948  3.19422     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     12   3.00834  2.54393  3.05952  0.19218     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     13   0.15297  3.30004  2.74948  3.19422     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     14   3.00834  2.54393  3.05952  0.19218     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     15   2.89070  3.50572  0.12655  3.40205     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     16   3.34045  0.14183  3.39374  2.76103     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     17   3.34045  0.14183  3.39374  2.76103     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     18   3.00834  2.54393  3.05952  0.19218     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     19   2.89070  3.50572  0.12655  3.40205     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     20   2.89070  3.50572  0.12655  3.40205     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     21   2.89070  3.50572  0.12655  3.40205     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     22   0.15297  3.30004  2.74948  3.19422     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     23   2.89070  3.50572  0.12655  3.40205     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     24   3.34045  0.14183  3.39374  2.76103     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     25   0.15297  3.30004  2.74948  3.19422     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     26   3.00834  2.54393  3.05952  0.19218     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     27   2.89070  3.50572  0.12655  3.40205     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     28   3.34045  0.14183  3.39374  2.76103     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     29   3.00834  2.54393  3.05952  0.19218     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     30   3.00834  2.54393  3.05952  0.19218     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     31   2.89070  3.50572  0.12655  3.40205     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     32   3.00834  2.54393  3.05952  0.19218     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     33   3.34045  0.14183  3.39374  2.76103     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     34   2.89070  3.50572  0.12655  3.40205     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     35   2.89070  3.50572  0.12655  3.40205     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     36   2.89070  3.50572  0.12655  3.40205     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     37   2.89070  3.50572  0.12655  3.40205     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     38   0.15297  3.30004  2.74948  3.19422     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     39   2.89070  3.50572  0.12655  3.40205     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     40   2.89070  3.50572  0.12655  3.40205     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     41   0.15297  3.30004  2.74948  3.19422     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     42   2.89070  3.50572  0.12655  3.40205     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     43   2.89070  3.50572  0.12655  3.40205     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     44   0.15297  3.30004  2.74948  3.19422     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96690  3.96690  1.46634  0.26236  1.09861  0.40547
+     45   2.89070  3.50572  0.12655  3.40205     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01949  3.94778        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Phaeophyceae_58S_start_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Oct  9 00:07:52 2011
+NSEQ  172
+EFFN  3.414490
+CKSUM 3324807830
+STATS LOCAL MSV       -7.5493  0.71932
+STATS LOCAL VITERBI   -7.7980  0.71932
+STATS LOCAL FORWARD   -4.1200  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23334  1.32585  1.45069  1.56687
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  0.00000        *
+      1   0.13813  3.40921  2.82069  3.31363      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+      2   0.13813  3.40921  2.82069  3.31363      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+      3   0.13813  3.40921  2.82069  3.31363      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03957  4.02794  3.86405  1.46634  0.26236  1.09861  0.40547
+      4   3.46006  0.12704  3.50837  2.84857      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03639  4.02476  4.02476  1.46634  0.26236  0.99239  0.46313
+      5   3.11793  2.61377  3.16496  0.17402      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+      6   3.11793  2.61377  3.16496  0.17402      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+      7   3.11793  2.61377  3.16496  0.17402      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+      8   3.46644  0.12630  3.51447  2.85320      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+      9   0.13813  3.40921  2.82069  3.31363      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     10   2.96761  3.61705  0.11400  3.52478     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     11   3.46644  0.12630  3.51447  2.85320     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     12   2.96761  3.61705  0.11400  3.52478     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     13   0.13813  3.40921  2.82069  3.31363     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     14   3.46644  0.12630  3.51447  2.85320     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     15   2.96761  3.61705  0.11400  3.52478     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     16   2.96761  3.61705  0.11400  3.52478     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     17   0.13813  3.40921  2.82069  3.31363     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     18   3.11793  2.61377  3.16496  0.17402     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     19   2.75768  3.33183  0.16194  2.98898     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     20   3.11793  2.61377  3.16496  0.17402     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     21   3.40356  0.13949  3.45347  2.72863     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     22   3.11793  2.61377  3.16496  0.17402     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     23   3.11793  2.61377  3.16496  0.17402     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     24   2.96761  3.61705  0.11400  3.52478     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     25   2.96761  3.61705  0.11400  3.52478     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     26   3.46644  0.12630  3.51447  2.85320     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     27   3.11793  2.61377  3.16496  0.17402     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     28   3.40356  0.13949  3.45347  2.72863     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     29   3.46644  0.12630  3.51447  2.85320     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     30   3.24911  0.16062  3.09989  2.74076     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     31   0.19055  2.85099  2.70211  3.02323     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     32   3.46644  0.12630  3.51447  2.85320     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     33   0.38905  2.58578  2.40246  1.85488     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     34   0.13813  3.40921  2.82069  3.31363     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     35   3.46644  0.12630  3.51447  2.85320     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     36   2.96761  3.61705  0.11400  3.52478     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     37   0.16251  3.10809  2.76286  3.16548     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     38   3.11793  2.61377  3.16496  0.17402     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     39   2.96761  3.61705  0.11400  3.52478     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     40   0.13813  3.40921  2.82069  3.31363     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     41   0.13813  3.40921  2.82069  3.31363     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     42   2.84865  3.56389  0.12488  3.46916     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     43   0.17679  2.96825  2.73119  3.08982     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     44   0.13813  3.40921  2.82069  3.31363     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03627  4.02794  4.02794  1.46634  0.26236  1.09861  0.40547
+     45   3.46644  0.12630  3.51447  2.85320     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01830  4.00996        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Phaeophyceae_4_LSU_start_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 12:15:29 2012
+NSEQ  48
+EFFN  3.231445
+CKSUM 2699152105
+STATS LOCAL MSV       -8.2524  0.71932
+STATS LOCAL VITERBI   -7.5362  0.71932
+STATS LOCAL FORWARD   -3.9900  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22159  1.33002  1.44966  1.57931
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  0.00000        *
+      1   3.05877  2.57614  3.10806  0.18356      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      2   3.05877  2.57614  3.10806  0.18356      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      3   3.39890  0.13436  3.44980  2.80403      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      4   2.92673  3.55757  0.12052  3.45913      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      5   2.92673  3.55757  0.12052  3.45913      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      6   0.16986  3.26223  2.58526  3.15740      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      7   3.39890  0.13436  3.44980  2.80403      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      8   3.39890  0.13436  3.44980  2.80403      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      9   3.05877  2.57614  3.10806  0.18356      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     10   3.39890  0.13436  3.44980  2.80403     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     11   3.39890  0.13436  3.44980  2.80403     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     12   2.92673  3.55757  0.12052  3.45913     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     13   0.14587  3.35060  2.78262  3.24948     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     14   3.05877  2.57614  3.10806  0.18356     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     15   3.39890  0.13436  3.44980  2.80403     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     16   0.14587  3.35060  2.78262  3.24948     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     17   0.14587  3.35060  2.78262  3.24948     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     18   2.71470  3.45506  0.14251  3.35200     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     19   3.39890  0.13436  3.44980  2.80403     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     20   0.14587  3.35060  2.78262  3.24948     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     21   0.14587  3.35060  2.78262  3.24948     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     22   2.92673  3.55757  0.12052  3.45913     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     23   0.14587  3.35060  2.78262  3.24948     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     24   2.92673  3.55757  0.12052  3.45913     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     25   2.92673  3.55757  0.12052  3.45913     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     26   0.14587  3.35060  2.78262  3.24948     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     27   3.39890  0.13436  3.44980  2.80403     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     28   3.39890  0.13436  3.44980  2.80403     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     29   3.39890  0.13436  3.44980  2.80403     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     30   2.92673  3.55757  0.12052  3.45913     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     31   3.39890  0.13436  3.44980  2.80403     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     32   3.05877  2.57614  3.10806  0.18356     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     33   2.92673  3.55757  0.12052  3.45913     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     34   0.14587  3.35060  2.78262  3.24948     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     35   0.14587  3.35060  2.78262  3.24948     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     36   3.05877  2.57614  3.10806  0.18356     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     37   3.05877  2.57614  3.10806  0.18356     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     38   3.05877  2.57614  3.10806  0.18356     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     39   0.14587  3.35060  2.78262  3.24948     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     40   0.14587  3.35060  2.78262  3.24948     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     41   2.92673  3.55757  0.12052  3.45913     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     42   3.39890  0.13436  3.44980  2.80403     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     43   0.14587  3.35060  2.78262  3.24948     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     44   3.05877  2.57614  3.10806  0.18356     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     45   0.14587  3.35060  2.78262  3.24948     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01893  3.97621        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Phaeophyceae_1_SSU_end_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 12:07:06 2012
+NSEQ  89
+EFFN  3.229401
+CKSUM 1632466499
+STATS LOCAL MSV       -8.0048  0.71932
+STATS LOCAL VITERBI   -7.6816  0.71932
+STATS LOCAL FORWARD   -4.1101  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27187  1.62651  1.24657  1.44566
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  0.00000        *
+      1   0.14597  3.34993  2.78218  3.24874      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+      2   2.92625  3.55688  0.12059  3.45837      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+      3   3.05809  2.57571  3.10741  0.18367      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+      4   3.39812  0.13446  3.44905  2.80346      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+      5   2.92625  3.55688  0.12059  3.45837      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+      6   3.05809  2.57571  3.10741  0.18367      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+      7   0.14597  3.34993  2.78218  3.24874      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+      8   0.14597  3.34993  2.78218  3.24874      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+      9   3.39812  0.13446  3.44905  2.80346      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     10   0.14597  3.34993  2.78218  3.24874     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     11   0.14597  3.34993  2.78218  3.24874     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     12   2.92625  3.55688  0.12059  3.45837     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     13   2.92625  3.55688  0.12059  3.45837     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     14   3.05809  2.57571  3.10741  0.18367     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     15   3.05809  2.57571  3.10741  0.18367     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     16   3.05809  2.57571  3.10741  0.18367     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     17   3.39812  0.13446  3.44905  2.80346     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     18   3.39812  0.13446  3.44905  2.80346     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     19   2.92625  3.55688  0.12059  3.45837     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     20   3.05809  2.57571  3.10741  0.18367     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     21   0.14597  3.34993  2.78218  3.24874     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     22   2.92625  3.55688  0.12059  3.45837     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     23   2.92625  3.55688  0.12059  3.45837     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     24   3.05809  2.57571  3.10741  0.18367     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     25   2.92625  3.55688  0.12059  3.45837     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     26   0.14597  3.34993  2.78218  3.24874     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     27   0.14597  3.34993  2.78218  3.24874     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     28   3.39812  0.13446  3.44905  2.80346     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     29   3.39812  0.13446  3.44905  2.80346     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     30   3.05809  2.57571  3.10741  0.18367     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     31   2.92625  3.55688  0.12059  3.45837     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     32   3.39812  0.13446  3.44905  2.80346     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     33   2.92625  3.55688  0.12059  3.45837     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     34   2.92625  3.55688  0.12059  3.45837     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     35   0.14597  3.34993  2.78218  3.24874     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     36   0.14597  3.34993  2.78218  3.24874     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     37   2.92625  3.55688  0.12059  3.45837     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     38   2.92625  3.55688  0.12059  3.45837     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     39   0.14597  3.34993  2.78218  3.24874     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     40   3.05809  2.57571  3.10741  0.18367     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     41   3.39812  0.13446  3.44905  2.80346     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     42   0.14597  3.34993  2.78218  3.24874     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     43   3.05809  2.57571  3.10741  0.18367     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     44   3.05809  2.57571  3.10741  0.18367     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99441  3.99441  1.46634  0.26236  1.09861  0.40547
+     45   0.14597  3.34993  2.78218  3.24874     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01894  3.97582        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/I.hmm.h3f
Binary file ITSx_db/HMMs/I.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/I.hmm.h3i
Binary file ITSx_db/HMMs/I.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/I.hmm.h3m
Binary file ITSx_db/HMMs/I.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/I.hmm.h3p
Binary file ITSx_db/HMMs/I.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/L.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/L.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,6045 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_foura_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:48:18 2012
+NSEQ  4
+EFFN  3.089844
+CKSUM 3677159024
+STATS LOCAL MSV       -8.1113  0.71933
+STATS LOCAL VITERBI   -7.8119  0.71933
+STATS LOCAL FORWARD   -3.9220  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72586  1.10743  1.14821  1.74657
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  0.00000        *
+      1   3.34359  0.14142  3.39674  2.76335      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+      2   2.89265  3.50850  0.12621  3.40512      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+      3   3.34359  0.14142  3.39674  2.76335      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+      4   3.34359  0.14142  3.39674  2.76335      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+      5   3.34359  0.14142  3.39674  2.76335      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+      6   2.89265  3.50850  0.12621  3.40512      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+      7   0.15258  3.30274  2.75126  3.19718      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+      8   2.89265  3.50850  0.12621  3.40512      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+      9   2.89265  3.50850  0.12621  3.40512      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     10   3.01102  2.54565  3.06211  0.19171     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     11   3.34359  0.14142  3.39674  2.76335     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     12   3.01102  2.54565  3.06211  0.19171     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     13   3.34359  0.14142  3.39674  2.76335     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     14   2.89265  3.50850  0.12621  3.40512     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     15   3.01102  2.54565  3.06211  0.19171     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     16   0.15258  3.30274  2.75126  3.19718     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     17   3.34359  0.14142  3.39674  2.76335     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     18   3.34359  0.14142  3.39674  2.76335     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     19   2.89265  3.50850  0.12621  3.40512     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     20   0.15258  3.30274  2.75126  3.19718     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     21   2.89265  3.50850  0.12621  3.40512     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     22   2.89265  3.50850  0.12621  3.40512     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     23   2.89265  3.50850  0.12621  3.40512     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     24   3.34359  0.14142  3.39674  2.76335     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     25   0.15258  3.30274  2.75126  3.19718     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     26   3.34359  0.14142  3.39674  2.76335     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     27   2.89265  3.50850  0.12621  3.40512     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     28   3.01102  2.54565  3.06211  0.19171     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     29   3.34359  0.14142  3.39674  2.76335     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     30   3.01102  2.54565  3.06211  0.19171     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     31   2.89265  3.50850  0.12621  3.40512     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     32   3.34359  0.14142  3.39674  2.76335     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     33   3.34359  0.14142  3.39674  2.76335     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     34   3.01102  2.54565  3.06211  0.19171     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     35   2.89265  3.50850  0.12621  3.40512     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     36   0.15258  3.30274  2.75126  3.19718     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     37   2.89265  3.50850  0.12621  3.40512     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     38   3.34359  0.14142  3.39674  2.76335     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     39   2.89265  3.50850  0.12621  3.40512     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     40   3.01102  2.54565  3.06211  0.19171     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     41   3.34359  0.14142  3.39674  2.76335     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     42   0.15258  3.30274  2.75126  3.19718     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     43   3.34359  0.14142  3.39674  2.76335     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     44   0.15258  3.30274  2.75126  3.19718     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     45   2.89265  3.50850  0.12621  3.40512     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01946  3.94929        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_fourb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:48:24 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 131491290
+STATS LOCAL MSV       -7.4968  0.72757
+STATS LOCAL VITERBI   -8.3707  0.72757
+STATS LOCAL FORWARD   -3.7471  0.72757
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66684  1.23957  1.21839  1.48748
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_fourc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:48:31 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1848225497
+STATS LOCAL MSV       -8.1659  0.71999
+STATS LOCAL VITERBI   -7.8126  0.71999
+STATS LOCAL FORWARD   -4.1112  0.71999
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72006  1.20903  1.20251  1.50499
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.86982  3.47591  0.13017  3.36931      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.97980  2.52563  3.03204  0.19727     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.86982  3.47591  0.13017  3.36931     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:33:59 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2649339398
+STATS LOCAL MSV       -7.6624  0.72818
+STATS LOCAL VITERBI   -8.3675  0.72818
+STATS LOCAL FORWARD   -3.1512  0.72818
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82330  1.26894  1.16757  1.40139
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.15554  1.00938  2.23102  0.88601     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:46:07 2012
+NSEQ  9
+EFFN  3.062988
+CKSUM 1860575478
+STATS LOCAL MSV       -8.2074  0.71931
+STATS LOCAL VITERBI   -7.8383  0.71931
+STATS LOCAL FORWARD   -3.6122  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82320  1.06212  1.09674  1.84004
+          1.38629  1.38629  1.38629  1.38629
+          0.03874  3.96328  3.96328  1.46634  0.26236  0.00000        *
+      1   2.88593  3.49888  0.12737  3.39454      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
+      2   3.33278  0.14284  3.38637  2.75536      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
+      3   2.88593  3.49888  0.12737  3.39454      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03874  3.96328  3.96328  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
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+     43   3.33278  0.14284  3.38637  2.75536     43 - -
+          1.38629  1.38629  1.38629  1.38629
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+     44   3.33278  0.14284  3.38637  2.75536     44 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   2.88593  3.49888  0.12737  3.39454     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01956  3.94410        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twoa_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:34:25 2012
+NSEQ  63
+EFFN  3.541443
+CKSUM 483320876
+STATS LOCAL MSV       -7.4302  0.71932
+STATS LOCAL VITERBI   -7.8320  0.71932
+STATS LOCAL FORWARD   -3.9705  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.03893  1.09040  1.11844  1.57522
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05030  4.05030  1.46634  0.26236  0.00000        *
+      1   3.15732  2.63877  3.20283  0.16799      1 - -
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+      2   2.99408  3.65584  0.10998  3.56768      2 - -
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+      3   3.31573  0.16407  3.36836  2.51866      3 - -
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+     45   3.08572  2.45946  3.13390  0.19204     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01788  4.03272        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twob_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:34:51 2012
+NSEQ  69
+EFFN  3.407043
+CKSUM 3150839531
+STATS LOCAL MSV       -7.5085  0.71932
+STATS LOCAL VITERBI   -7.8461  0.71932
+STATS LOCAL FORWARD   -3.6364  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.04551  1.00425  1.10045  1.76232
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  0.00000        *
+      1   2.96602  3.61471  0.11425  3.52219      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+      2   3.46377  0.12661  3.51192  2.85127      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+      3   2.96602  3.61471  0.11425  3.52219      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+      4   3.46377  0.12661  3.51192  2.85127      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+      5   3.46377  0.12661  3.51192  2.85127      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+      6   3.46377  0.12661  3.51192  2.85127      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+      7   2.96602  3.61471  0.11425  3.52219      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+      8   0.13843  3.40690  2.81919  3.31109      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+      9   2.96602  3.61471  0.11425  3.52219      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     10   2.96602  3.61471  0.11425  3.52219     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     11   3.46377  0.12661  3.51192  2.85127     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     12   3.11557  2.61228  3.16269  0.17439     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     13   3.46377  0.12661  3.51192  2.85127     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     14   2.18816  3.18460  0.22329  3.06608     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     15   3.11557  2.61228  3.16269  0.17439     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     16   2.71675  0.39482  2.78521  1.61749     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     17   3.46377  0.12661  3.51192  2.85127     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     18   3.46377  0.12661  3.51192  2.85127     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     19   2.59926  3.43451  0.15351  3.33160     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     20   0.13843  3.40690  2.81919  3.31109     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     21   2.96602  3.61471  0.11425  3.52219     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     22   2.96602  3.61471  0.11425  3.52219     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     23   2.96602  3.61471  0.11425  3.52219     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     24   3.46377  0.12661  3.51192  2.85127     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     25   0.13843  3.40690  2.81919  3.31109     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     26   3.11557  2.61228  3.16269  0.17439     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     27   2.96602  3.61471  0.11425  3.52219     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     28   3.46377  0.12661  3.51192  2.85127     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     29   3.46377  0.12661  3.51192  2.85127     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     30   2.59381  1.51853  2.65973  0.45214     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     31   2.96602  3.61471  0.11425  3.52219     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     32   3.20944  0.18626  3.26557  2.39265     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     33   3.46377  0.12661  3.51192  2.85127     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     34   3.11557  2.61228  3.16269  0.17439     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     35   2.96602  3.61471  0.11425  3.52219     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     36   0.13843  3.40690  2.81919  3.31109     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     37   2.96602  3.61471  0.11425  3.52219     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     38   3.46377  0.12661  3.51192  2.85127     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     39   2.96602  3.61471  0.11425  3.52219     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     40   3.11557  2.61228  3.16269  0.17439     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     41   3.46377  0.12661  3.51192  2.85127     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     42   3.46377  0.12661  3.51192  2.85127     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     43   2.43900  3.34200  0.17680  3.23306     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     44   3.31928  0.15831  3.37192  2.57812     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02661  4.02661  1.46634  0.26236  1.09861  0.40547
+     45   2.80292  1.92973  2.86176  0.30515     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01833  4.00861        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twoc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:34:58 2012
+NSEQ  11
+EFFN  3.558350
+CKSUM 944707035
+STATS LOCAL MSV       -7.4441  0.71932
+STATS LOCAL VITERBI   -7.7493  0.71932
+STATS LOCAL FORWARD   -3.8456  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93151  1.08511  1.17869  1.56292
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  0.00000        *
+      1   2.99749  3.66086  0.10947  3.57324      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+      2   3.51652  0.12069  3.56237  2.88933      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+      3   2.99749  3.66086  0.10947  3.57324      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+      4   3.51652  0.12069  3.56237  2.88933      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+      5   3.51652  0.12069  3.56237  2.88933      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+      6   3.51652  0.12069  3.56237  2.88933      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+      7   2.99749  3.66086  0.10947  3.57324      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+      8   0.13268  3.45283  2.84886  3.36146      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+      9   2.99749  3.66086  0.10947  3.57324      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     10   2.99749  3.66086  0.10947  3.57324     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     11   3.51652  0.12069  3.56237  2.88933     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     12   3.16247  2.64204  3.20777  0.16722     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     13   3.16247  2.64204  3.20777  0.16722     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     14   2.99749  3.66086  0.10947  3.57324     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     15   3.16247  2.64204  3.20777  0.16722     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     16   2.85970  0.32413  2.92525  1.79634     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     17   3.51652  0.12069  3.56237  2.88933     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     18   3.51652  0.12069  3.56237  2.88933     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     19   0.13268  3.45283  2.84886  3.36146     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     20   0.13268  3.45283  2.84886  3.36146     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     21   2.99749  3.66086  0.10947  3.57324     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     22   2.99749  3.66086  0.10947  3.57324     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     23   2.99749  3.66086  0.10947  3.57324     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     24   3.51652  0.12069  3.56237  2.88933     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     25   0.13268  3.45283  2.84886  3.36146     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     26   3.16247  2.64204  3.20777  0.16722     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     27   2.99749  3.66086  0.10947  3.57324     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     28   2.45623  1.03792  2.52724  0.73361     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     29   3.51652  0.12069  3.56237  2.88933     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     30   3.16247  2.64204  3.20777  0.16722     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     31   2.99749  3.66086  0.10947  3.57324     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     32   3.51652  0.12069  3.56237  2.88933     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     33   3.51652  0.12069  3.56237  2.88933     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     34   3.16247  2.64204  3.20777  0.16722     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     35   2.99749  3.66086  0.10947  3.57324     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     36   0.13268  3.45283  2.84886  3.36146     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     37   2.99749  3.66086  0.10947  3.57324     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     38   3.51652  0.12069  3.56237  2.88933     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     39   2.99749  3.66086  0.10947  3.57324     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     40   3.16247  2.64204  3.20777  0.16722     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     41   3.51652  0.12069  3.56237  2.88933     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     42   3.51652  0.12069  3.56237  2.88933     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     43   2.01505  1.58261  1.26724  0.96853     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     44   2.86287  0.32252  2.92835  1.80127     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03535  4.05324  4.05324  1.46634  0.26236  1.09861  0.40547
+     45   3.16247  2.64204  3.20777  0.16722     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01783  4.03572        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twod_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:35:06 2012
+NSEQ  14
+EFFN  3.072754
+CKSUM 2872875780
+STATS LOCAL MSV       -8.2157  0.71932
+STATS LOCAL VITERBI   -7.9043  0.71932
+STATS LOCAL FORWARD   -3.5847  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.05213  1.01793  1.04891  1.83335
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  0.00000        *
+      1   2.88838  3.50239  0.12695  3.39840      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+      2   3.33672  0.14232  3.39016  2.75827      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+      3   2.88838  3.50239  0.12695  3.39840      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+      4   3.33672  0.14232  3.39016  2.75827      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+      5   3.33672  0.14232  3.39016  2.75827      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+      6   3.33672  0.14232  3.39016  2.75827      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+      7   2.88838  3.50239  0.12695  3.39840      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+      8   0.15343  3.29681  2.74736  3.19071      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+      9   2.88838  3.50239  0.12695  3.39840      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     10   2.88838  3.50239  0.12695  3.39840     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     11   3.33672  0.14232  3.39016  2.75827     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     12   3.00514  2.54188  3.05644  0.19274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     13   3.33672  0.14232  3.39016  2.75827     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     14   2.88838  3.50239  0.12695  3.39840     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     15   3.00514  2.54188  3.05644  0.19274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     16   3.33672  0.14232  3.39016  2.75827     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     17   3.33672  0.14232  3.39016  2.75827     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     18   3.33672  0.14232  3.39016  2.75827     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     19   2.88838  3.50239  0.12695  3.39840     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     20   0.15343  3.29681  2.74736  3.19071     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     21   2.88838  3.50239  0.12695  3.39840     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     22   2.88838  3.50239  0.12695  3.39840     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     23   2.88838  3.50239  0.12695  3.39840     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     24   3.33672  0.14232  3.39016  2.75827     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     25   0.15343  3.29681  2.74736  3.19071     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     26   3.00514  2.54188  3.05644  0.19274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     27   2.88838  3.50239  0.12695  3.39840     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     28   3.33672  0.14232  3.39016  2.75827     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     29   3.33672  0.14232  3.39016  2.75827     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     30   3.00514  2.54188  3.05644  0.19274     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     31   2.88838  3.50239  0.12695  3.39840     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     32   3.33672  0.14232  3.39016  2.75827     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     33   3.33672  0.14232  3.39016  2.75827     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     34   3.00514  2.54188  3.05644  0.19274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     35   2.88838  3.50239  0.12695  3.39840     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     36   0.15343  3.29681  2.74736  3.19071     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     37   2.88838  3.50239  0.12695  3.39840     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     38   3.33672  0.14232  3.39016  2.75827     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     39   2.88838  3.50239  0.12695  3.39840     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     40   3.00514  2.54188  3.05644  0.19274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     41   3.33672  0.14232  3.39016  2.75827     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     42   3.33672  0.14232  3.39016  2.75827     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     43   2.88838  3.50239  0.12695  3.39840     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     44   2.88838  3.50239  0.12695  3.39840     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     45   3.04408  0.22016  3.10514  2.25233     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01952  3.94599        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twoe_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:35:14 2012
+NSEQ  4
+EFFN  3.160156
+CKSUM 1816074381
+STATS LOCAL MSV       -8.2845  0.71931
+STATS LOCAL VITERBI   -7.7890  0.71931
+STATS LOCAL FORWARD   -4.1716  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72354  1.26655  1.14343  1.50941
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  0.00000        *
+      1   2.90985  3.53322  0.12331  3.43230      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+      2   3.37140  0.13782  3.42342  2.78385      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+      3   2.90985  3.53322  0.12331  3.43230      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+      4   3.37140  0.13782  3.42342  2.78385      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+      5   3.37140  0.13782  3.42342  2.78385      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+      6   3.37140  0.13782  3.42342  2.78385      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+      7   2.90985  3.53322  0.12331  3.43230      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+      8   0.14916  3.32679  2.76705  3.22344      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+      9   2.90985  3.53322  0.12331  3.43230      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     10   2.90985  3.53322  0.12331  3.43230     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     11   3.37140  0.13782  3.42342  2.78385     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     12   3.03495  2.56095  3.08514  0.18757     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     13   3.37140  0.13782  3.42342  2.78385     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     14   0.14916  3.32679  2.76705  3.22344     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     15   3.03495  2.56095  3.08514  0.18757     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     16   0.14916  3.32679  2.76705  3.22344     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     17   3.37140  0.13782  3.42342  2.78385     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     18   3.37140  0.13782  3.42342  2.78385     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     19   2.90985  3.53322  0.12331  3.43230     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     20   0.14916  3.32679  2.76705  3.22344     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     21   2.90985  3.53322  0.12331  3.43230     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     22   2.90985  3.53322  0.12331  3.43230     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     23   2.90985  3.53322  0.12331  3.43230     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     24   3.37140  0.13782  3.42342  2.78385     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     25   0.14916  3.32679  2.76705  3.22344     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     26   3.03495  2.56095  3.08514  0.18757     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     27   2.90985  3.53322  0.12331  3.43230     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     28   3.03495  2.56095  3.08514  0.18757     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     29   3.37140  0.13782  3.42342  2.78385     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     30   3.03495  2.56095  3.08514  0.18757     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     31   2.90985  3.53322  0.12331  3.43230     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     32   3.03495  2.56095  3.08514  0.18757     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     33   3.37140  0.13782  3.42342  2.78385     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     34   3.03495  2.56095  3.08514  0.18757     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     35   2.90985  3.53322  0.12331  3.43230     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     36   0.14916  3.32679  2.76705  3.22344     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     37   2.90985  3.53322  0.12331  3.43230     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     38   3.37140  0.13782  3.42342  2.78385     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     39   2.90985  3.53322  0.12331  3.43230     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     40   3.03495  2.56095  3.08514  0.18757     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     41   3.37140  0.13782  3.42342  2.78385     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     42   0.14916  3.32679  2.76705  3.22344     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     43   3.03495  2.56095  3.08514  0.18757     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     44   3.03495  2.56095  3.08514  0.18757     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     45   2.90985  3.53322  0.12331  3.43230     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01919  3.96275        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twof_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:35:21 2012
+NSEQ  12
+EFFN  3.524414
+CKSUM 4252090704
+STATS LOCAL MSV       -7.3373  0.71932
+STATS LOCAL VITERBI   -7.6151  0.71932
+STATS LOCAL FORWARD   -4.1079  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.90012  1.18904  1.09310  1.55703
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  0.00000        *
+      1   2.99061  3.65075  0.11049  3.56205      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+      2   3.50494  0.12196  3.55129  2.88100      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+      3   2.99061  3.65075  0.11049  3.56205      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+      4   3.50494  0.12196  3.55129  2.88100      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+      5   3.50494  0.12196  3.55129  2.88100      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+      6   3.50494  0.12196  3.55129  2.88100      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+      7   2.99061  3.65075  0.11049  3.56205      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+      8   0.13392  3.44273  2.84235  3.35037      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+      9   2.99061  3.65075  0.11049  3.56205      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     10   2.99061  3.65075  0.11049  3.56205     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     11   3.50494  0.12196  3.55129  2.88100     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     12   3.15211  2.63547  3.19782  0.16877     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     13   3.50494  0.12196  3.55129  2.88100     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     14   2.02590  3.10448  0.25804  2.98161     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     15   3.15211  2.63547  3.19782  0.16877     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     16   0.13392  3.44273  2.84235  3.35037     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     17   3.50494  0.12196  3.55129  2.88100     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     18   3.50494  0.12196  3.55129  2.88100     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     19   2.99061  3.65075  0.11049  3.56205     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     20   0.13392  3.44273  2.84235  3.35037     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     21   2.99061  3.65075  0.11049  3.56205     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     22   2.99061  3.65075  0.11049  3.56205     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     23   2.99061  3.65075  0.11049  3.56205     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     24   3.50494  0.12196  3.55129  2.88100     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     25   0.13392  3.44273  2.84235  3.35037     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     26   3.15211  2.63547  3.19782  0.16877     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     27   2.99061  3.65075  0.11049  3.56205     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     28   2.45514  0.77885  2.52723  0.97993     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     29   3.50494  0.12196  3.55129  2.88100     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     30   3.15211  2.63547  3.19782  0.16877     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     31   2.99061  3.65075  0.11049  3.56205     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     32   3.15211  2.63547  3.19782  0.16877     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     33   3.50494  0.12196  3.55129  2.88100     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     34   3.15211  2.63547  3.19782  0.16877     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     35   2.99061  3.65075  0.11049  3.56205     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     36   0.13392  3.44273  2.84235  3.35037     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     37   2.99061  3.65075  0.11049  3.56205     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     38   3.50494  0.12196  3.55129  2.88100     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     39   2.99061  3.65075  0.11049  3.56205     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     40   3.15211  2.63547  3.19782  0.16877     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     41   3.50494  0.12196  3.55129  2.88100     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     42   1.57096  0.54164  2.38169  2.13737     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     43   2.78346  1.83757  2.84334  0.32748     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     44   3.15211  2.63547  3.19782  0.16877     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     45   2.39961  3.34563  0.18064  3.23722     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01794  4.02970        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twog_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:35:30 2012
+NSEQ  49
+EFFN  3.155212
+CKSUM 2291896190
+STATS LOCAL MSV       -8.0235  0.71933
+STATS LOCAL VITERBI   -7.6669  0.71933
+STATS LOCAL FORWARD   -4.0260  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82102  1.16638  1.09237  1.65429
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  0.00000        *
+      1   2.90866  3.53150  0.12351  3.43041      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+      2   3.36946  0.13806  3.42157  2.78242      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+      3   2.90866  3.53150  0.12351  3.43041      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+      4   3.36946  0.13806  3.42157  2.78242      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+      5   3.36946  0.13806  3.42157  2.78242      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+      6   3.36946  0.13806  3.42157  2.78242      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+      7   2.90866  3.53150  0.12351  3.43041      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+      8   0.14940  3.32512  2.76595  3.22162      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+      9   2.90866  3.53150  0.12351  3.43041      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     10   2.90866  3.53150  0.12351  3.43041     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     11   3.36946  0.13806  3.42157  2.78242     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     12   3.03328  2.55988  3.08354  0.18786     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     13   3.36946  0.13806  3.42157  2.78242     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     14   2.90866  3.53150  0.12351  3.43041     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     15   3.03328  2.55988  3.08354  0.18786     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     16   0.14940  3.32512  2.76595  3.22162     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     17   3.36946  0.13806  3.42157  2.78242     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     18   3.36946  0.13806  3.42157  2.78242     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     19   2.90866  3.53150  0.12351  3.43041     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     20   0.14940  3.32512  2.76595  3.22162     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     21   2.90866  3.53150  0.12351  3.43041     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     22   2.90866  3.53150  0.12351  3.43041     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     23   2.90866  3.53150  0.12351  3.43041     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     24   3.36946  0.13806  3.42157  2.78242     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     25   0.14940  3.32512  2.76595  3.22162     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     26   3.03328  2.55988  3.08354  0.18786     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     27   2.90866  3.53150  0.12351  3.43041     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     28   2.85073  0.29930  2.91641  1.91913     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     29   3.36946  0.13806  3.42157  2.78242     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     30   3.03328  2.55988  3.08354  0.18786     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     31   2.90866  3.53150  0.12351  3.43041     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     32   3.03328  2.55988  3.08354  0.18786     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     33   3.36946  0.13806  3.42157  2.78242     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     34   3.03328  2.55988  3.08354  0.18786     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     35   2.90866  3.53150  0.12351  3.43041     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     36   0.14940  3.32512  2.76595  3.22162     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     37   2.90866  3.53150  0.12351  3.43041     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     38   3.36946  0.13806  3.42157  2.78242     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     39   2.90866  3.53150  0.12351  3.43041     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     40   3.03328  2.55988  3.08354  0.18786     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     41   3.36946  0.13806  3.42157  2.78242     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     42   3.36946  0.13806  3.42157  2.78242     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     43   0.14940  3.32512  2.76595  3.22162     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     44   3.03328  2.55988  3.08354  0.18786     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03806  3.98066  3.98066  1.46634  0.26236  1.09861  0.40547
+     45   2.90866  3.53150  0.12351  3.43041     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01921  3.96181        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twoh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:35:40 2012
+NSEQ  8
+EFFN  3.089844
+CKSUM 909806235
+STATS LOCAL MSV       -8.0300  0.71932
+STATS LOCAL VITERBI   -7.6424  0.71932
+STATS LOCAL FORWARD   -3.9465  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92796  1.15977  1.04591  1.66270
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  0.00000        *
+      1   2.89265  3.50850  0.12621  3.40512      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+      2   3.34359  0.14142  3.39674  2.76335      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+      3   2.89265  3.50850  0.12621  3.40512      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+      4   3.34359  0.14142  3.39674  2.76335      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+      5   3.34359  0.14142  3.39674  2.76335      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+      6   3.34359  0.14142  3.39674  2.76335      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+      7   2.89265  3.50850  0.12621  3.40512      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+      8   0.15258  3.30274  2.75126  3.19718      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+      9   2.89265  3.50850  0.12621  3.40512      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     10   2.89265  3.50850  0.12621  3.40512     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     11   3.34359  0.14142  3.39674  2.76335     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     12   3.01102  2.54565  3.06211  0.19171     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     13   3.34359  0.14142  3.39674  2.76335     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     14   2.89265  3.50850  0.12621  3.40512     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     15   3.01102  2.54565  3.06211  0.19171     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     16   0.15258  3.30274  2.75126  3.19718     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     17   3.34359  0.14142  3.39674  2.76335     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     18   3.34359  0.14142  3.39674  2.76335     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     19   2.89265  3.50850  0.12621  3.40512     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     20   0.15258  3.30274  2.75126  3.19718     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     21   2.89265  3.50850  0.12621  3.40512     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     22   2.89265  3.50850  0.12621  3.40512     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     23   2.89265  3.50850  0.12621  3.40512     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     24   3.34359  0.14142  3.39674  2.76335     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     25   0.15258  3.30274  2.75126  3.19718     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     26   3.01102  2.54565  3.06211  0.19171     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     27   2.89265  3.50850  0.12621  3.40512     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     28   3.34359  0.14142  3.39674  2.76335     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     29   3.34359  0.14142  3.39674  2.76335     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     30   3.01102  2.54565  3.06211  0.19171     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     31   2.89265  3.50850  0.12621  3.40512     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     32   3.01102  2.54565  3.06211  0.19171     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     33   3.34359  0.14142  3.39674  2.76335     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     34   3.01102  2.54565  3.06211  0.19171     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     35   2.89265  3.50850  0.12621  3.40512     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     36   0.15258  3.30274  2.75126  3.19718     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     37   2.89265  3.50850  0.12621  3.40512     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     38   3.34359  0.14142  3.39674  2.76335     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     39   2.89265  3.50850  0.12621  3.40512     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     40   3.01102  2.54565  3.06211  0.19171     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     41   3.34359  0.14142  3.39674  2.76335     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     42   3.34359  0.14142  3.39674  2.76335     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     43   2.89265  3.50850  0.12621  3.40512     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     44   3.01102  2.54565  3.06211  0.19171     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03854  3.96837  3.96837  1.46634  0.26236  1.09861  0.40547
+     45   2.89265  3.50850  0.12621  3.40512     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01946  3.94929        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twoi_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:35:46 2012
+NSEQ  6
+EFFN  3.219727
+CKSUM 1018979143
+STATS LOCAL MSV       -8.1293  0.71931
+STATS LOCAL VITERBI   -7.7358  0.71931
+STATS LOCAL FORWARD   -4.1604  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.86045  1.20726  1.08050  1.58009
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  0.00000        *
+      1   2.92399  3.55362  0.12096  3.45477      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      2   3.39443  0.13492  3.44551  2.80075      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      3   2.92399  3.55362  0.12096  3.45477      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      4   3.39443  0.13492  3.44551  2.80075      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      5   3.39443  0.13492  3.44551  2.80075      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      6   3.39443  0.13492  3.44551  2.80075      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      7   2.92399  3.55362  0.12096  3.45477      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      8   0.14640  3.34673  2.78009  3.24524      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      9   2.92399  3.55362  0.12096  3.45477      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     10   2.92399  3.55362  0.12096  3.45477     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     11   3.39443  0.13492  3.44551  2.80075     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     12   3.05488  2.57367  3.10432  0.18421     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     13   3.39443  0.13492  3.44551  2.80075     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     14   2.92399  3.55362  0.12096  3.45477     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     15   3.05488  2.57367  3.10432  0.18421     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     16   0.14640  3.34673  2.78009  3.24524     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     17   3.39443  0.13492  3.44551  2.80075     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     18   3.39443  0.13492  3.44551  2.80075     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     19   0.52608  2.60866  1.38344  2.46821     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     20   0.14640  3.34673  2.78009  3.24524     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     21   2.92399  3.55362  0.12096  3.45477     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     22   2.92399  3.55362  0.12096  3.45477     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     23   2.92399  3.55362  0.12096  3.45477     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     24   3.39443  0.13492  3.44551  2.80075     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     25   0.14640  3.34673  2.78009  3.24524     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     26   3.05488  2.57367  3.10432  0.18421     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     27   2.92399  3.55362  0.12096  3.45477     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     28   3.05488  2.57367  3.10432  0.18421     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     29   3.39443  0.13492  3.44551  2.80075     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     30   3.05488  2.57367  3.10432  0.18421     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     31   2.92399  3.55362  0.12096  3.45477     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     32   3.05488  2.57367  3.10432  0.18421     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     33   3.39443  0.13492  3.44551  2.80075     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     34   3.05488  2.57367  3.10432  0.18421     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     35   2.92399  3.55362  0.12096  3.45477     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     36   0.14640  3.34673  2.78009  3.24524     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     37   2.92399  3.55362  0.12096  3.45477     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     38   3.39443  0.13492  3.44551  2.80075     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     39   2.92399  3.55362  0.12096  3.45477     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     40   3.05488  2.57367  3.10432  0.18421     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     41   3.39443  0.13492  3.44551  2.80075     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     42   3.39443  0.13492  3.44551  2.80075     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     43   2.92399  3.55362  0.12096  3.45477     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     44   3.05488  2.57367  3.10432  0.18421     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     45   2.92399  3.55362  0.12096  3.45477     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01898  3.97401        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twoj_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:35:54 2012
+NSEQ  5
+EFFN  3.315430
+CKSUM 1914285711
+STATS LOCAL MSV       -8.1077  0.71931
+STATS LOCAL VITERBI   -7.6269  0.71931
+STATS LOCAL FORWARD   -4.2009  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81863  1.16585  1.08606  1.66839
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  0.00000        *
+      1   2.94591  3.58540  0.11742  3.48982      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      2   3.43043  0.13053  3.48000  2.82705      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      3   2.94591  3.58540  0.11742  3.48982      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      4   3.43043  0.13053  3.48000  2.82705      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      5   3.43043  0.13053  3.48000  2.82705      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      6   2.43265  0.73484  2.50519  1.04710      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      7   2.94591  3.58540  0.11742  3.48982      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      8   0.14220  3.37794  2.80041  3.27938      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      9   2.94591  3.58540  0.11742  3.48982      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     10   2.94591  3.58540  0.11742  3.48982     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     11   3.43043  0.13053  3.48000  2.82705     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     12   3.08626  2.59365  3.13451  0.17906     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     13   3.43043  0.13053  3.48000  2.82705     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     14   2.94591  3.58540  0.11742  3.48982     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     15   3.08626  2.59365  3.13451  0.17906     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     16   0.14220  3.37794  2.80041  3.27938     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     17   3.43043  0.13053  3.48000  2.82705     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     18   3.43043  0.13053  3.48000  2.82705     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     19   2.94591  3.58540  0.11742  3.48982     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     20   0.14220  3.37794  2.80041  3.27938     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     21   2.94591  3.58540  0.11742  3.48982     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     22   2.94591  3.58540  0.11742  3.48982     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     23   2.94591  3.58540  0.11742  3.48982     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     24   3.43043  0.13053  3.48000  2.82705     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     25   0.14220  3.37794  2.80041  3.27938     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     26   3.08626  2.59365  3.13451  0.17906     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     27   2.94591  3.58540  0.11742  3.48982     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     28   2.44453  1.19261  2.51493  0.63689     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     29   3.43043  0.13053  3.48000  2.82705     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     30   3.08626  2.59365  3.13451  0.17906     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     31   2.94591  3.58540  0.11742  3.48982     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     32   3.08626  2.59365  3.13451  0.17906     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     33   3.43043  0.13053  3.48000  2.82705     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     34   3.08626  2.59365  3.13451  0.17906     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     35   2.94591  3.58540  0.11742  3.48982     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     36   0.14220  3.37794  2.80041  3.27938     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     37   2.94591  3.58540  0.11742  3.48982     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     38   3.43043  0.13053  3.48000  2.82705     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     39   2.94591  3.58540  0.11742  3.48982     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     40   3.08626  2.59365  3.13451  0.17906     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     41   3.43043  0.13053  3.48000  2.82705     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     42   3.43043  0.13053  3.48000  2.82705     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     43   0.14220  3.37794  2.80041  3.27938     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     44   3.43043  0.13053  3.48000  2.82705     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     45   2.94591  3.58540  0.11742  3.48982     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01864  3.99184        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twok_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:36:02 2012
+NSEQ  7
+EFFN  3.168457
+CKSUM 4015894505
+STATS LOCAL MSV       -8.1875  0.71932
+STATS LOCAL VITERBI   -7.6009  0.71932
+STATS LOCAL FORWARD   -4.1596  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93262  1.20466  1.14638  1.43694
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  0.00000        *
+      1   2.91185  3.53609  0.12297  3.43546      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      2   3.37463  0.13741  3.42653  2.78623      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      3   2.91185  3.53609  0.12297  3.43546      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      4   3.37463  0.13741  3.42653  2.78623      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      5   3.37463  0.13741  3.42653  2.78623      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      6   3.37463  0.13741  3.42653  2.78623      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      7   2.91185  3.53609  0.12297  3.43546      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      8   0.14877  3.32959  2.76888  3.22651      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      9   2.91185  3.53609  0.12297  3.43546      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     10   2.91185  3.53609  0.12297  3.43546     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     11   3.37463  0.13741  3.42653  2.78623     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     12   3.03775  2.56273  3.08783  0.18710     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     13   3.37463  0.13741  3.42653  2.78623     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     14   3.03775  2.56273  3.08783  0.18710     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     15   3.03775  2.56273  3.08783  0.18710     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     16   0.14877  3.32959  2.76888  3.22651     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     17   3.37463  0.13741  3.42653  2.78623     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     18   3.37463  0.13741  3.42653  2.78623     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     19   2.91185  3.53609  0.12297  3.43546     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     20   0.14877  3.32959  2.76888  3.22651     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     21   2.91185  3.53609  0.12297  3.43546     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     22   2.91185  3.53609  0.12297  3.43546     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     23   2.91185  3.53609  0.12297  3.43546     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     24   3.37463  0.13741  3.42653  2.78623     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     25   0.14877  3.32959  2.76888  3.22651     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     26   3.03775  2.56273  3.08783  0.18710     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     27   2.91185  3.53609  0.12297  3.43546     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     28   3.03775  2.56273  3.08783  0.18710     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     29   3.37463  0.13741  3.42653  2.78623     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     30   3.03775  2.56273  3.08783  0.18710     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     31   2.91185  3.53609  0.12297  3.43546     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     32   3.03775  2.56273  3.08783  0.18710     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     33   3.37463  0.13741  3.42653  2.78623     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     34   3.03775  2.56273  3.08783  0.18710     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     35   2.91185  3.53609  0.12297  3.43546     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     36   0.14877  3.32959  2.76888  3.22651     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     37   2.91185  3.53609  0.12297  3.43546     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     38   3.37463  0.13741  3.42653  2.78623     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     39   2.91185  3.53609  0.12297  3.43546     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     40   3.03775  2.56273  3.08783  0.18710     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     41   3.37463  0.13741  3.42653  2.78623     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     42   3.37463  0.13741  3.42653  2.78623     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     43   3.03775  2.56273  3.08783  0.18710     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     44   3.03775  2.56273  3.08783  0.18710     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     45   2.91185  3.53609  0.12297  3.43546     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01916  3.96432        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twol_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:36:10 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 644527050
+STATS LOCAL MSV       -7.6467  0.72740
+STATS LOCAL VITERBI   -8.2973  0.72740
+STATS LOCAL FORWARD   -3.3814  0.72740
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82981  1.24206  1.12275  1.48995
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twom_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:36:19 2012
+NSEQ  5
+EFFN  3.168945
+CKSUM 3208013427
+STATS LOCAL MSV       -8.2354  0.71934
+STATS LOCAL VITERBI   -7.7805  0.71934
+STATS LOCAL FORWARD   -4.1144  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82194  1.26345  1.14443  1.43882
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  0.00000        *
+      1   2.91196  3.53626  0.12295  3.43565      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      2   3.37482  0.13738  3.42671  2.78637      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.01916  3.96442        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twon_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:36:26 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1433831041
+STATS LOCAL MSV       -8.1598  0.71994
+STATS LOCAL VITERBI   -7.7732  0.71994
+STATS LOCAL FORWARD   -4.1128  0.71994
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81554  1.21056  1.14731  1.50629
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
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+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twoo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:36:34 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 163887748
+STATS LOCAL MSV       -7.5850  0.72714
+STATS LOCAL VITERBI   -8.2317  0.72714
+STATS LOCAL FORWARD   -3.5245  0.72714
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82690  1.29897  1.03409  1.55719
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twop_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:36:42 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1237938417
+STATS LOCAL MSV       -7.9602  0.71991
+STATS LOCAL VITERBI   -7.6581  0.71991
+STATS LOCAL FORWARD   -4.0925  0.71991
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81297  1.27097  1.09445  1.50712
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.86982  3.47591  0.13017  3.36931     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twoq_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:36:51 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1217683786
+STATS LOCAL MSV       -7.4909  0.72753
+STATS LOCAL VITERBI   -8.2720  0.72753
+STATS LOCAL FORWARD   -3.6887  0.72753
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74092  1.34564  1.11983  1.43577
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twor_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:36:57 2012
+NSEQ  381
+EFFN  3.118996
+CKSUM 3010216746
+STATS LOCAL MSV       -8.2812  0.71931
+STATS LOCAL VITERBI   -7.9258  0.71931
+STATS LOCAL FORWARD   -3.5872  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93097  1.06146  1.09757  1.74090
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  0.00000        *
+      1   2.89985  3.51884  0.12499  3.41648      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+      2   3.35520  0.13990  3.40789  2.77192      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+      3   2.89985  3.51884  0.12499  3.41648      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+      4   3.35520  0.13990  3.40789  2.77192      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+      5   3.35520  0.13990  3.40789  2.77192      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+      6   3.35520  0.13990  3.40789  2.77192      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+      7   2.89985  3.51884  0.12499  3.41648      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+      8   0.15114  3.31278  2.75786  3.20814      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+      9   2.89985  3.51884  0.12499  3.41648      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     10   2.89985  3.51884  0.12499  3.41648     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     11   3.28568  0.15570  3.34009  2.64040     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     12   3.02100  2.55203  3.07171  0.18997     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     13   3.02100  2.55203  3.07171  0.18997     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     14   2.89985  3.51884  0.12499  3.41648     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     15   3.02100  2.55203  3.07171  0.18997     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     16   3.35520  0.13990  3.40789  2.77192     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     17   3.35520  0.13990  3.40789  2.77192     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     18   3.35520  0.13990  3.40789  2.77192     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     19   2.67361  3.40631  0.14975  3.29928     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     20   0.15114  3.31278  2.75786  3.20814     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     21   2.89985  3.51884  0.12499  3.41648     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     22   2.89985  3.51884  0.12499  3.41648     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     23   2.89985  3.51884  0.12499  3.41648     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     24   3.35520  0.13990  3.40789  2.77192     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     25   0.15114  3.31278  2.75786  3.20814     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     26   3.02100  2.55203  3.07171  0.18997     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     27   2.89985  3.51884  0.12499  3.41648     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     28   3.27238  0.15886  3.32714  2.61634     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     29   3.35520  0.13990  3.40789  2.77192     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     30   3.02100  2.55203  3.07171  0.18997     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     31   2.89985  3.51884  0.12499  3.41648     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     32   3.29487  0.15354  3.34904  2.65722     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     33   3.35520  0.13990  3.40789  2.77192     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     34   3.02100  2.55203  3.07171  0.18997     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     35   2.89985  3.51884  0.12499  3.41648     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     36   0.15114  3.31278  2.75786  3.20814     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     37   2.89985  3.51884  0.12499  3.41648     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     38   3.35520  0.13990  3.40789  2.77192     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     39   2.89985  3.51884  0.12499  3.41648     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     40   3.02100  2.55203  3.07171  0.18997     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     41   3.35520  0.13990  3.40789  2.77192     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     42   0.15114  3.31278  2.75786  3.20814     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     43   3.35520  0.13990  3.40789  2.77192     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     44   3.25363  0.16339  3.30892  2.58292     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03833  3.97387  3.97387  1.46634  0.26236  1.09861  0.40547
+     45   2.89985  3.51884  0.12499  3.41648     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01935  3.95489        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twos_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:37:03 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2079554623
+STATS LOCAL MSV       -8.0923  0.71963
+STATS LOCAL VITERBI   -7.8815  0.71963
+STATS LOCAL FORWARD   -3.7154  0.71963
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92700  1.06154  1.09883  1.74164
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   0.15719  3.27118  2.73043  3.16274     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
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+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twot_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:37:10 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1228495162
+STATS LOCAL MSV       -8.0485  0.71986
+STATS LOCAL VITERBI   -7.8652  0.71986
+STATS LOCAL FORWARD   -3.8213  0.71986
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.91826  1.26987  1.04606  1.50981
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.86982  3.47591  0.13017  3.36931     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.86982  3.47591  0.13017  3.36931     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twou_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:37:17 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 373476516
+STATS LOCAL MSV       -8.0655  0.71980
+STATS LOCAL VITERBI   -7.9691  0.71980
+STATS LOCAL FORWARD   -3.6833  0.71980
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92304  1.15872  1.09717  1.57922
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Marchantiophyta_58S_end_twox_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 17:37:24 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2845665714
+STATS LOCAL MSV       -7.6619  0.72718
+STATS LOCAL VITERBI   -8.4364  0.72718
+STATS LOCAL FORWARD   -3.1326  0.72718
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.83385  1.15118  1.12465  1.61359
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Marchantiophyta_58S_start_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:17:40 2012
+NSEQ  727
+EFFN  3.469379
+CKSUM 3115831225
+STATS LOCAL MSV       -7.5086  0.71932
+STATS LOCAL VITERBI   -7.5251  0.71932
+STATS LOCAL FORWARD   -4.0424  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26902  1.34994  1.43847  1.50352
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  0.00000        *
+      1   2.11695  0.76692  1.75306  1.41917      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+      2   2.87784  3.58971  0.12120  3.49715      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+      3   0.13599  3.42610  2.83161  3.33214      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+      4   3.48585  0.12409  3.53304  2.86723      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+      5   3.13512  2.62469  3.18149  0.17136      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+      6   3.48585  0.12409  3.53304  2.86723      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+      7   3.13512  2.62469  3.18149  0.17136      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+      8   3.48585  0.12409  3.53304  2.86723      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+      9   0.14976  3.37255  2.70286  3.27615      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     10   2.97924  3.63406  0.11222  3.54358     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     11   3.48585  0.12409  3.53304  2.86723     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     12   0.13599  3.42610  2.83161  3.33214     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     13   0.13599  3.42610  2.83161  3.33214     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     14   3.48585  0.12409  3.53304  2.86723     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     15   2.97924  3.63406  0.11222  3.54358     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     16   2.97924  3.63406  0.11222  3.54358     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     17   0.13599  3.42610  2.83161  3.33214     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     18   3.13512  2.62469  3.18149  0.17136     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     19   0.13599  3.42610  2.83161  3.33214     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     20   3.13512  2.62469  3.18149  0.17136     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     21   3.48585  0.12409  3.53304  2.86723     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     22   3.13512  2.62469  3.18149  0.17136     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     23   2.99355  2.40996  2.97280  0.21207     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     24   2.97924  3.63406  0.11222  3.54358     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     25   2.97924  3.63406  0.11222  3.54358     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     26   3.48585  0.12409  3.53304  2.86723     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     27   3.13512  2.62469  3.18149  0.17136     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     28   3.48585  0.12409  3.53304  2.86723     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     29   2.90255  2.09775  2.95785  0.26077     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     30   3.01545  2.33722  3.06631  0.21346     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     31   2.93739  3.42661  0.12487  3.44547     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     32   3.48585  0.12409  3.53304  2.86723     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     33   0.13599  3.42610  2.83161  3.33214     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     34   0.13599  3.42610  2.83161  3.33214     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     35   3.48585  0.12409  3.53304  2.86723     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     36   2.97924  3.63406  0.11222  3.54358     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     37   0.13599  3.42610  2.83161  3.33214     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     38   3.13512  2.62469  3.18149  0.17136     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     39   2.97924  3.63406  0.11222  3.54358     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     40   0.13599  3.42610  2.83161  3.33214     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     41   0.13599  3.42610  2.83161  3.33214     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     42   2.97924  3.63406  0.11222  3.54358     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     43   0.13599  3.42610  2.83161  3.33214     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     44   0.13599  3.42610  2.83161  3.33214     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03766  4.03766  1.46634  0.26236  1.09861  0.40547
+     45   3.48585  0.12409  3.53304  2.86723     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01812  4.01987        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Marchantiophyta_4_LSU_start_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 18:26:42 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 105693907
+STATS LOCAL MSV       -8.1416  0.72054
+STATS LOCAL VITERBI   -7.6064  0.72054
+STATS LOCAL FORWARD   -3.9951  0.72054
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27697  1.35997  1.37204  1.55656
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.43223  0.62271  2.50508  1.22417     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Marchantiophyta_4_LSU_start_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 18:26:11 2012
+NSEQ  15
+EFFN  3.204346
+CKSUM 1688665315
+STATS LOCAL MSV       -8.1859  0.71932
+STATS LOCAL VITERBI   -7.5786  0.71932
+STATS LOCAL FORWARD   -4.0935  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28069  1.26783  1.45149  1.57749
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  0.00000        *
+      1   3.04977  2.57040  3.09940  0.18507      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+      2   3.04977  2.57040  3.09940  0.18507      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+      3   3.38853  0.13565  3.43985  2.79643      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+      4   2.92038  3.54839  0.12156  3.44902      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+      5   2.92038  3.54839  0.12156  3.44902      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+      6   0.14711  3.34162  2.77675  3.23965      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+      7   3.38853  0.13565  3.43985  2.79643      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+      8   3.38853  0.13565  3.43985  2.79643      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+      9   3.04977  2.57040  3.09940  0.18507      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     10   3.38853  0.13565  3.43985  2.79643     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     11   0.14711  3.34162  2.77675  3.23965     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     12   2.92038  3.54839  0.12156  3.44902     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     13   0.14711  3.34162  2.77675  3.23965     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     14   3.04977  2.57040  3.09940  0.18507     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     15   3.38853  0.13565  3.43985  2.79643     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     16   0.14711  3.34162  2.77675  3.23965     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     17   2.92038  3.54839  0.12156  3.44902     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     18   2.92038  3.54839  0.12156  3.44902     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     19   3.38853  0.13565  3.43985  2.79643     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     20   0.14711  3.34162  2.77675  3.23965     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     21   0.14711  3.34162  2.77675  3.23965     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     22   2.92038  3.54839  0.12156  3.44902     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     23   0.14711  3.34162  2.77675  3.23965     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     24   3.38853  0.13565  3.43985  2.79643     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     25   3.38853  0.13565  3.43985  2.79643     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     26   0.14711  3.34162  2.77675  3.23965     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     27   3.38853  0.13565  3.43985  2.79643     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     28   3.38853  0.13565  3.43985  2.79643     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     29   3.38853  0.13565  3.43985  2.79643     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     30   2.92038  3.54839  0.12156  3.44902     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     31   3.38853  0.13565  3.43985  2.79643     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     32   3.04977  2.57040  3.09940  0.18507     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     33   2.92038  3.54839  0.12156  3.44902     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     34   0.14711  3.34162  2.77675  3.23965     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     35   2.92038  3.54839  0.12156  3.44902     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     36   3.04977  2.57040  3.09940  0.18507     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     37   3.04977  2.57040  3.09940  0.18507     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     38   3.04977  2.57040  3.09940  0.18507     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     39   0.14711  3.34162  2.77675  3.23965     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     40   0.14711  3.34162  2.77675  3.23965     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     41   2.92038  3.54839  0.12156  3.44902     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     42   3.38853  0.13565  3.43985  2.79643     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     43   0.14711  3.34162  2.77675  3.23965     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     44   3.04977  2.57040  3.09940  0.18507     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03771  3.98979  3.98979  1.46634  0.26236  1.09861  0.40547
+     45   0.14711  3.34162  2.77675  3.23965     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01903  3.97111        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Marchantiophyta_4_LSU_start_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 18:26:03 2012
+NSEQ  6
+EFFN  3.196289
+CKSUM 96037354
+STATS LOCAL MSV       -8.2136  0.71931
+STATS LOCAL VITERBI   -7.6391  0.71931
+STATS LOCAL FORWARD   -4.0258  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22379  1.20916  1.52738  1.65897
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  0.00000        *
+      1   3.38542  0.13604  3.43688  2.79415      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98830  3.98830  1.46634  0.26236  1.09861  0.40547
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+     44   3.04708  2.56869  3.09681  0.18552     44 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   0.14748  3.33893  2.77499  3.23671     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01906  3.96959        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Marchantiophyta_4_LSU_start_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 18:26:52 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 647530765
+STATS LOCAL MSV       -7.4739  0.72783
+STATS LOCAL VITERBI   -8.0723  0.72783
+STATS LOCAL FORWARD   -3.4690  0.72783
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23999  1.34853  1.43256  1.54979
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
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+      2   2.57915  2.25909  2.64442  0.28946      2 - -
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+      3   0.23862  2.84929  2.43386  2.70756      3 - -
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+      4   2.53331  3.02441  0.20344  2.88069      4 - -
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+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Marchantiophyta_4_LSU_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 18:25:39 2012
+NSEQ  20
+EFFN  3.540039
+CKSUM 3998707778
+STATS LOCAL MSV       -7.6760  0.71934
+STATS LOCAL VITERBI   -7.5419  0.71934
+STATS LOCAL FORWARD   -4.1193  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27980  1.23983  1.44541  1.62545
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  0.00000        *
+      1   2.46911  0.73562  2.54114  1.02903      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+      2   3.15689  2.63850  3.20241  0.16805      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+      3   3.11759  0.21933  3.17647  2.19873      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+      4   2.99379  3.65542  0.11002  3.56722      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+      5   2.99379  3.65542  0.11002  3.56722      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+      6   0.13334  3.44739  2.84535  3.35549      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+      7   3.51029  0.12137  3.55641  2.88485      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+      8   3.51029  0.12137  3.55641  2.88485      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+      9   3.15689  2.63850  3.20241  0.16805      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     10   3.51029  0.12137  3.55641  2.88485     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     11   0.13334  3.44739  2.84535  3.35549     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     12   2.99379  3.65542  0.11002  3.56722     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     13   0.13334  3.44739  2.84535  3.35549     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     14   3.15689  2.63850  3.20241  0.16805     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     15   3.51029  0.12137  3.55641  2.88485     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     16   0.32078  2.91982  1.83681  2.79446     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     17   2.99379  3.65542  0.11002  3.56722     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     18   2.33938  3.31208  0.19059  3.20151     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     19   3.51029  0.12137  3.55641  2.88485     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     20   0.13334  3.44739  2.84535  3.35549     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     21   0.13334  3.44739  2.84535  3.35549     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     22   2.99379  3.65542  0.11002  3.56722     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     23   0.13334  3.44739  2.84535  3.35549     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     24   3.51029  0.12137  3.55641  2.88485     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     25   3.10712  0.22270  3.16631  2.18250     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     26   0.13334  3.44739  2.84535  3.35549     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     27   3.51029  0.12137  3.55641  2.88485     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     28   3.51029  0.12137  3.55641  2.88485     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     29   3.51029  0.12137  3.55641  2.88485     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     30   2.99379  3.65542  0.11002  3.56722     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     31   3.51029  0.12137  3.55641  2.88485     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     32   2.91081  2.08007  2.96599  0.26249     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     33   2.99379  3.65542  0.11002  3.56722     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     34   0.13334  3.44739  2.84535  3.35549     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     35   2.99379  3.65542  0.11002  3.56722     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     36   3.15689  2.63850  3.20241  0.16805     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     37   3.15689  2.63850  3.20241  0.16805     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     38   3.15689  2.63850  3.20241  0.16805     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     39   0.13334  3.44739  2.84535  3.35549     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     40   0.13334  3.44739  2.84535  3.35549     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     41   2.99379  3.65542  0.11002  3.56722     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     42   3.51029  0.12137  3.55641  2.88485     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     43   0.13334  3.44739  2.84535  3.35549     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     44   3.15689  2.63850  3.20241  0.16805     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05005  4.05005  1.46634  0.26236  1.09861  0.40547
+     45   0.13334  3.44739  2.84535  3.35549     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01789  4.03248        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Marchantiophyta_4_LSU_start_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 18:26:33 2012
+NSEQ  7
+EFFN  3.188965
+CKSUM 2453683499
+STATS LOCAL MSV       -8.1588  0.71933
+STATS LOCAL VITERBI   -7.6809  0.71933
+STATS LOCAL FORWARD   -4.0969  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34227  1.26850  1.38186  1.57801
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  0.00000        *
+      1   3.04463  2.56713  3.09446  0.18593      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+      2   3.04463  2.56713  3.09446  0.18593      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+      3   3.38259  0.13640  3.43416  2.79207      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+      4   2.91674  3.54314  0.12216  3.44323      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+      5   2.91674  3.54314  0.12216  3.44323      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+      6   0.14782  3.33648  2.77339  3.23404      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+      7   3.38259  0.13640  3.43416  2.79207      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+      8   3.38259  0.13640  3.43416  2.79207      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+      9   3.04463  2.56713  3.09446  0.18593      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     10   3.38259  0.13640  3.43416  2.79207     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     11   0.14782  3.33648  2.77339  3.23404     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     12   2.91674  3.54314  0.12216  3.44323     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     13   0.14782  3.33648  2.77339  3.23404     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     14   3.04463  2.56713  3.09446  0.18593     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     15   3.38259  0.13640  3.43416  2.79207     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     16   2.91674  3.54314  0.12216  3.44323     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     17   2.91674  3.54314  0.12216  3.44323     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     18   2.91674  3.54314  0.12216  3.44323     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     19   3.38259  0.13640  3.43416  2.79207     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     20   0.14782  3.33648  2.77339  3.23404     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     21   0.14782  3.33648  2.77339  3.23404     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     22   2.91674  3.54314  0.12216  3.44323     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     23   0.14782  3.33648  2.77339  3.23404     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     24   3.38259  0.13640  3.43416  2.79207     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     25   3.38259  0.13640  3.43416  2.79207     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     26   0.14782  3.33648  2.77339  3.23404     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     27   3.38259  0.13640  3.43416  2.79207     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     28   3.38259  0.13640  3.43416  2.79207     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     29   3.38259  0.13640  3.43416  2.79207     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     30   2.91674  3.54314  0.12216  3.44323     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     31   3.38259  0.13640  3.43416  2.79207     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     32   3.04463  2.56713  3.09446  0.18593     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     33   2.91674  3.54314  0.12216  3.44323     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     34   0.14782  3.33648  2.77339  3.23404     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     35   2.91674  3.54314  0.12216  3.44323     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     36   3.04463  2.56713  3.09446  0.18593     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     37   3.04463  2.56713  3.09446  0.18593     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     38   3.04463  2.56713  3.09446  0.18593     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     39   0.14782  3.33648  2.77339  3.23404     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     40   0.14782  3.33648  2.77339  3.23404     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     41   2.91674  3.54314  0.12216  3.44323     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     42   3.38259  0.13640  3.43416  2.79207     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     43   0.14782  3.33648  2.77339  3.23404     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     44   3.04463  2.56713  3.09446  0.18593     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03782  3.98694  3.98694  1.46634  0.26236  1.09861  0.40547
+     45   0.14782  3.33648  2.77339  3.23404     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01909  3.96821        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Marchantiophyta_4_LSU_start_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 18:26:23 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 4290214155
+STATS LOCAL MSV       -8.1730  0.72006
+STATS LOCAL VITERBI   -7.7143  0.72006
+STATS LOCAL FORWARD   -3.8565  0.72006
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28332  1.21312  1.45038  1.65477
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   3.30705  0.14631  3.36166  2.73626     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Marchantiophyta_4_LSU_start_ten_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 18:27:01 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 817679163
+STATS LOCAL MSV       -7.7131  0.72754
+STATS LOCAL VITERBI   -8.3485  0.72754
+STATS LOCAL FORWARD   -3.4669  0.72754
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34554  1.29909  1.31832  1.61326
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.81865  0.23582  2.88868  2.35662     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.53331  3.02441  0.20344  2.88069     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Marchantiophyta_4_LSU_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 18:25:55 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2635444069
+STATS LOCAL MSV       -8.1670  0.72023
+STATS LOCAL VITERBI   -7.6237  0.72023
+STATS LOCAL FORWARD   -4.0458  0.72023
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28119  1.32936  1.44798  1.50236
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   3.30705  0.14631  3.36166  2.73626     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Marchantiophyta_4_LSU_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Jan 25 18:25:46 2012
+NSEQ  21
+EFFN  3.309448
+CKSUM 3528604808
+STATS LOCAL MSV       -8.1581  0.71931
+STATS LOCAL VITERBI   -7.4789  0.71931
+STATS LOCAL FORWARD   -4.1423  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27636  1.38744  1.46044  1.43087
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  0.00000        *
+      1   3.42822  0.13079  3.47788  2.82543      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+      2   3.08433  2.59242  3.13264  0.17937      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+      3   3.08433  2.59242  3.13264  0.17937      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+      4   2.59337  2.93933  0.25330  2.34244      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+      5   2.94456  3.58345  0.11763  3.48767      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+      6   0.14246  3.37602  2.79917  3.27728      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+      7   3.42822  0.13079  3.47788  2.82543      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+      8   3.42822  0.13079  3.47788  2.82543      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+      9   3.08433  2.59242  3.13264  0.17937      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     10   3.42822  0.13079  3.47788  2.82543     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     11   0.14246  3.37602  2.79917  3.27728     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     12   2.94456  3.58345  0.11763  3.48767     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     13   0.14246  3.37602  2.79917  3.27728     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     14   3.08433  2.59242  3.13264  0.17937     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     15   3.42822  0.13079  3.47788  2.82543     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     16   0.14246  3.37602  2.79917  3.27728     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     17   2.94456  3.58345  0.11763  3.48767     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     18   2.94456  3.58345  0.11763  3.48767     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     19   3.42822  0.13079  3.47788  2.82543     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     20   0.14246  3.37602  2.79917  3.27728     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     21   0.14246  3.37602  2.79917  3.27728     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     22   2.94456  3.58345  0.11763  3.48767     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     23   0.14246  3.37602  2.79917  3.27728     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     24   3.08433  2.59242  3.13264  0.17937     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     25   3.08433  2.59242  3.13264  0.17937     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     26   0.14246  3.37602  2.79917  3.27728     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     27   3.42822  0.13079  3.47788  2.82543     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     28   3.42822  0.13079  3.47788  2.82543     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     29   3.42822  0.13079  3.47788  2.82543     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     30   2.94456  3.58345  0.11763  3.48767     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     31   3.42822  0.13079  3.47788  2.82543     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     32   3.08433  2.59242  3.13264  0.17937     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     33   2.94456  3.58345  0.11763  3.48767     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     34   0.14246  3.37602  2.79917  3.27728     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     35   2.94456  3.58345  0.11763  3.48767     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     36   3.08433  2.59242  3.13264  0.17937     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     37   3.08433  2.59242  3.13264  0.17937     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     38   3.08433  2.59242  3.13264  0.17937     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     39   0.14246  3.37602  2.79917  3.27728     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     40   0.14246  3.37602  2.79917  3.27728     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     41   2.94456  3.58345  0.11763  3.48767     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     42   3.42822  0.13079  3.47788  2.82543     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     43   0.14246  3.37602  2.79917  3.27728     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     44   3.08433  2.59242  3.13264  0.17937     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00905  4.00905  1.46634  0.26236  1.09861  0.40547
+     45   0.14246  3.37602  2.79917  3.27728     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01866  3.99073        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Marchantiophyta_1_SSU_end_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:12:54 2012
+NSEQ  199
+EFFN  3.227798
+CKSUM 1341977593
+STATS LOCAL MSV       -7.9719  0.71931
+STATS LOCAL VITERBI   -7.6787  0.71931
+STATS LOCAL FORWARD   -4.0863  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33255  1.62894  1.18902  1.44588
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  0.00000        *
+      1   0.14604  3.34940  2.78183  3.24816      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+      2   2.92588  3.55634  0.12065  3.45778      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+      3   3.05756  2.57537  3.10690  0.18376      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+      4   3.39751  0.13454  3.44846  2.80301      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+      5   2.92588  3.55634  0.12065  3.45778      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+      6   3.05756  2.57537  3.10690  0.18376      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+      7   0.14604  3.34940  2.78183  3.24816      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+      8   0.14604  3.34940  2.78183  3.24816      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+      9   3.39751  0.13454  3.44846  2.80301      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     10   0.14604  3.34940  2.78183  3.24816     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     11   0.14604  3.34940  2.78183  3.24816     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     12   2.92588  3.55634  0.12065  3.45778     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     13   2.92588  3.55634  0.12065  3.45778     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     14   3.05756  2.57537  3.10690  0.18376     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     15   3.05756  2.57537  3.10690  0.18376     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     16   3.05756  2.57537  3.10690  0.18376     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     17   3.26849  0.15489  3.20294  2.73664     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     18   3.39751  0.13454  3.44846  2.80301     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     19   2.92588  3.55634  0.12065  3.45778     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     20   3.05756  2.57537  3.10690  0.18376     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     21   0.14604  3.34940  2.78183  3.24816     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04062  3.99412  3.84540  1.46634  0.26236  1.09861  0.40547
+     22   2.92212  3.55092  0.12127  3.45180     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99116  3.99116  1.46634  0.26236  1.00196  0.45754
+     23   2.92588  3.55634  0.12065  3.45778     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     24   3.05756  2.57537  3.10690  0.18376     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     25   2.92588  3.55634  0.12065  3.45778     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     26   0.14604  3.34940  2.78183  3.24816     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     27   0.14604  3.34940  2.78183  3.24816     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     28   3.39751  0.13454  3.44846  2.80301     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     29   3.39751  0.13454  3.44846  2.80301     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     30   3.05756  2.57537  3.10690  0.18376     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     31   2.92588  3.55634  0.12065  3.45778     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     32   3.39751  0.13454  3.44846  2.80301     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     33   2.92588  3.55634  0.12065  3.45778     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     34   2.92588  3.55634  0.12065  3.45778     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     35   0.14604  3.34940  2.78183  3.24816     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     36   0.14604  3.34940  2.78183  3.24816     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     37   2.92588  3.55634  0.12065  3.45778     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     38   2.92588  3.55634  0.12065  3.45778     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     39   0.14604  3.34940  2.78183  3.24816     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     40   3.05756  2.57537  3.10690  0.18376     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     41   3.39751  0.13454  3.44846  2.80301     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     42   0.14604  3.34940  2.78183  3.24816     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     43   3.05756  2.57537  3.10690  0.18376     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     44   3.05756  2.57537  3.10690  0.18376     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99412  3.99412  1.46634  0.26236  1.09861  0.40547
+     45   2.92588  3.55634  0.12065  3.45778     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01895  3.97552        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/L.hmm.h3f
Binary file ITSx_db/HMMs/L.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/L.hmm.h3i
Binary file ITSx_db/HMMs/L.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/L.hmm.h3m
Binary file ITSx_db/HMMs/L.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/L.hmm.h3p
Binary file ITSx_db/HMMs/L.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/M.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/M.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,54870 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:35:27 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2003464747
+STATS LOCAL MSV       -7.3950  0.72793
+STATS LOCAL VITERBI   -8.3145  0.72793
+STATS LOCAL FORWARD   -3.2953  0.72793
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.58596  1.45659  1.21394  1.32730
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_eighteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:41:01 2012
+NSEQ  7
+EFFN  3.072754
+CKSUM 853724038
+STATS LOCAL MSV       -8.0712  0.71932
+STATS LOCAL VITERBI   -7.8377  0.71932
+STATS LOCAL FORWARD   -3.9153  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72598  1.06114  1.14871  1.83950
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  0.00000        *
+      1   2.88838  3.50239  0.12695  3.39840      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+      2   3.33672  0.14232  3.39016  2.75827      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+      3   3.33672  0.14232  3.39016  2.75827      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+      4   3.33672  0.14232  3.39016  2.75827      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+      5   0.15343  3.29681  2.74736  3.19071      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+      6   0.15343  3.29681  2.74736  3.19071      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+      7   2.88838  3.50239  0.12695  3.39840      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+      8   2.88838  3.50239  0.12695  3.39840      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+      9   0.15343  3.29681  2.74736  3.19071      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     10   3.00514  2.54188  3.05644  0.19274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     11   3.33672  0.14232  3.39016  2.75827     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     12   3.33672  0.14232  3.39016  2.75827     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     13   3.33672  0.14232  3.39016  2.75827     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     14   0.15343  3.29681  2.74736  3.19071     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     15   3.00514  2.54188  3.05644  0.19274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     16   3.00514  2.54188  3.05644  0.19274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     17   3.33672  0.14232  3.39016  2.75827     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     18   3.33672  0.14232  3.39016  2.75827     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     19   3.33672  0.14232  3.39016  2.75827     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     20   2.88838  3.50239  0.12695  3.39840     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     21   2.88838  3.50239  0.12695  3.39840     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     22   2.88838  3.50239  0.12695  3.39840     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     23   3.33672  0.14232  3.39016  2.75827     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     24   3.33672  0.14232  3.39016  2.75827     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     25   0.15343  3.29681  2.74736  3.19071     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     26   3.33672  0.14232  3.39016  2.75827     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     27   2.88838  3.50239  0.12695  3.39840     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     28   3.33672  0.14232  3.39016  2.75827     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     29   3.33672  0.14232  3.39016  2.75827     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     30   3.00514  2.54188  3.05644  0.19274     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     31   2.88838  3.50239  0.12695  3.39840     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     32   2.88838  3.50239  0.12695  3.39840     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     33   3.33672  0.14232  3.39016  2.75827     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     34   3.00514  2.54188  3.05644  0.19274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     35   2.88838  3.50239  0.12695  3.39840     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     36   0.15343  3.29681  2.74736  3.19071     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     37   2.88838  3.50239  0.12695  3.39840     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     38   2.88838  3.50239  0.12695  3.39840     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     39   2.88838  3.50239  0.12695  3.39840     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     40   3.33672  0.14232  3.39016  2.75827     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     41   0.15343  3.29681  2.74736  3.19071     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     42   2.88838  3.50239  0.12695  3.39840     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     43   2.88838  3.50239  0.12695  3.39840     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     44   3.33672  0.14232  3.39016  2.75827     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
+     45   3.00514  2.54188  3.05644  0.19274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01952  3.94599        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_elevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:36:50 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1769201338
+STATS LOCAL MSV       -7.4098  0.72868
+STATS LOCAL VITERBI   -8.2930  0.72868
+STATS LOCAL FORWARD   -3.7636  0.72868
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.65755  1.56600  1.31765  1.10036
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   0.23862  2.84929  2.43386  2.70756     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_elevenba_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:36:58 2012
+NSEQ  12
+EFFN  3.653320
+CKSUM 2545005974
+STATS LOCAL MSV       -7.2478  0.71933
+STATS LOCAL VITERBI   -7.5667  0.71933
+STATS LOCAL FORWARD   -4.4610  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.90548  1.55415  1.18492  1.09628
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  0.00000        *
+      1   3.54821  0.11728  3.59264  2.91206      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+      2   3.01623  3.68846  0.10671  3.60381      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+      3   3.54821  0.11728  3.59264  2.91206      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+      4   3.54821  0.11728  3.59264  2.91206      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+      5   3.01623  3.68846  0.10671  3.60381      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+      6   3.19097  2.66011  3.23517  0.16302      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+      7   3.19097  2.66011  3.23517  0.16302      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+      8   3.01623  3.68846  0.10671  3.60381      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+      9   3.01623  3.68846  0.10671  3.60381      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     10   3.01623  3.68846  0.10671  3.60381     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     11   2.46397  0.95038  2.53528  0.80058     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     12   3.19097  2.66011  3.23517  0.16302     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     13   1.31721  2.20518  2.29020  0.65269     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     14   3.19097  2.66011  3.23517  0.16302     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     15   3.01623  3.68846  0.10671  3.60381     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     16   3.54821  0.11728  3.59264  2.91206     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     17   3.19097  2.66011  3.23517  0.16302     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     18   3.54821  0.11728  3.59264  2.91206     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     19   3.19097  2.66011  3.23517  0.16302     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     20   3.19097  2.66011  3.23517  0.16302     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     21   3.54821  0.11728  3.59264  2.91206     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     22   3.01623  3.68846  0.10671  3.60381     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     23   3.01623  3.68846  0.10671  3.60381     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     24   3.54821  0.11728  3.59264  2.91206     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     25   0.12934  3.48051  2.86668  3.39183     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     26   3.19097  2.66011  3.23517  0.16302     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     27   0.12934  3.48051  2.86668  3.39183     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     28   3.19097  2.66011  3.23517  0.16302     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     29   3.01623  3.68846  0.10671  3.60381     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     30   2.80925  1.82879  2.86859  0.32523     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     31   3.01623  3.68846  0.10671  3.60381     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     32   0.12934  3.48051  2.86668  3.39183     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     33   3.19097  2.66011  3.23517  0.16302     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     34   3.19097  2.66011  3.23517  0.16302     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     35   3.54821  0.11728  3.59264  2.91206     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     36   0.12934  3.48051  2.86668  3.39183     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     37   3.01623  3.68846  0.10671  3.60381     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     38   3.01623  3.68846  0.10671  3.60381     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     39   3.01623  3.68846  0.10671  3.60381     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     40   3.19097  2.66011  3.23517  0.16302     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     41   0.12934  3.48051  2.86668  3.39183     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.14651  4.06959  2.12696  1.46634  0.26236  1.09861  0.40547
+     42   2.99921  2.53808  3.05074  0.19379     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03880  3.96188  3.96188  1.46634  0.26236  0.25204  1.50153
+     43   3.01623  3.68846  0.10671  3.60381     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     44   3.19097  2.66011  3.23517  0.16302     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
+     45   3.19097  2.66011  3.23517  0.16302     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01753  4.05236        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_elevenbb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:37:05 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2492946338
+STATS LOCAL MSV       -7.2784  0.72847
+STATS LOCAL VITERBI   -8.0968  0.72847
+STATS LOCAL FORWARD   -3.6372  0.72847
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73680  1.50236  1.26569  1.14173
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_elevenbc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:37:12 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1326273846
+STATS LOCAL MSV       -7.2371  0.72835
+STATS LOCAL VITERBI   -8.2153  0.72835
+STATS LOCAL FORWARD   -3.6602  0.72835
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73864  1.44249  1.26678  1.18363
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_elevenbd_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:37:20 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3676096652
+STATS LOCAL MSV       -7.2130  0.72850
+STATS LOCAL VITERBI   -8.4369  0.72850
+STATS LOCAL FORWARD   -3.6712  0.72850
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81889  1.56574  1.21422  1.10287
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_elevenbe_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:37:26 2012
+NSEQ  9
+EFFN  3.405762
+CKSUM 2444157436
+STATS LOCAL MSV       -7.2647  0.71933
+STATS LOCAL VITERBI   -7.8111  0.71933
+STATS LOCAL FORWARD   -4.3285  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93599  1.45945  1.25584  1.08318
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  0.00000        *
+      1   3.46331  0.12666  3.51148  2.85093      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+      2   2.96574  3.61431  0.11430  3.52175      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+      3   3.46331  0.12666  3.51148  2.85093      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+      4   3.11517  2.61202  3.16230  0.17445      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+      5   3.46331  0.12666  3.51148  2.85093      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+      6   3.11517  2.61202  3.16230  0.17445      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+      7   3.11517  2.61202  3.16230  0.17445      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+      8   2.96574  3.61431  0.11430  3.52175      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+      9   2.96574  3.61431  0.11430  3.52175      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     10   2.96574  3.61431  0.11430  3.52175     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     11   3.46331  0.12666  3.51148  2.85093     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     12   3.11517  2.61202  3.16230  0.17445     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     13   3.11517  2.61202  3.16230  0.17445     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     14   3.11517  2.61202  3.16230  0.17445     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     15   2.96574  3.61431  0.11430  3.52175     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     16   3.46331  0.12666  3.51148  2.85093     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     17   3.11517  2.61202  3.16230  0.17445     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     18   3.46331  0.12666  3.51148  2.85093     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     19   3.11517  2.61202  3.16230  0.17445     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     20   3.11517  2.61202  3.16230  0.17445     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     21   2.96574  3.61431  0.11430  3.52175     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     22   0.13848  3.40650  2.81894  3.31066     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     23   2.96574  3.61431  0.11430  3.52175     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     24   3.46331  0.12666  3.51148  2.85093     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     25   0.13848  3.40650  2.81894  3.31066     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     26   3.11517  2.61202  3.16230  0.17445     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     27   0.13848  3.40650  2.81894  3.31066     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     28   3.11517  2.61202  3.16230  0.17445     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     29   2.71342  0.39696  2.78195  1.61237     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     30   3.46331  0.12666  3.51148  2.85093     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     31   2.96574  3.61431  0.11430  3.52175     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     32   0.13848  3.40650  2.81894  3.31066     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     33   3.11517  2.61202  3.16230  0.17445     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     34   3.11517  2.61202  3.16230  0.17445     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     35   3.46331  0.12666  3.51148  2.85093     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     36   0.13848  3.40650  2.81894  3.31066     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     37   2.96574  3.61431  0.11430  3.52175     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     38   2.96574  3.61431  0.11430  3.52175     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     39   2.96574  3.61431  0.11430  3.52175     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     40   3.11517  2.61202  3.16230  0.17445     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     41   2.96574  3.61431  0.11430  3.52175     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     42   3.11517  2.61202  3.16230  0.17445     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     43   2.96574  3.61431  0.11430  3.52175     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     44   3.11517  2.61202  3.16230  0.17445     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     45   3.11517  2.61202  3.16230  0.17445     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01833  4.00838        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_elevenbf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:37:32 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4109347638
+STATS LOCAL MSV       -7.5168  0.72888
+STATS LOCAL VITERBI   -8.4209  0.72888
+STATS LOCAL FORWARD   -3.5664  0.72888
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73750  1.49258  1.37811  1.05788
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_elevenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:37:41 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3825414869
+STATS LOCAL MSV       -7.2301  0.72872
+STATS LOCAL VITERBI   -8.2274  0.72872
+STATS LOCAL FORWARD   -3.6065  0.72872
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73305  1.63696  1.26224  1.06228
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   0.23862  2.84929  2.43386  2.70756     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fifteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:38:34 2012
+NSEQ  16
+EFFN  3.605469
+CKSUM 3791217549
+STATS LOCAL MSV       -7.3241  0.71932
+STATS LOCAL VITERBI   -7.7948  0.71932
+STATS LOCAL FORWARD   -4.2664  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47195  1.82456  1.19451  1.18292
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  0.00000        *
+      1   0.13100  3.46667  2.85777  3.37664      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      2   3.17670  2.65106  3.22145  0.16511      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      3   0.13100  3.46667  2.85777  3.37664      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      4   3.17670  2.65106  3.22145  0.16511      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      5   3.17670  2.65106  3.22145  0.16511      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      6   3.53238  0.11897  3.57752  2.90072      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      7   0.13100  3.46667  2.85777  3.37664      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      8   2.85850  0.32833  2.92410  1.77901      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+      9   0.13100  3.46667  2.85777  3.37664      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     10   0.47160  2.71742  1.45125  2.58134     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     11   1.43022  2.74775  0.47311  2.60899     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     12   3.00689  3.67468  0.10808  3.58855     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     13   3.17670  2.65106  3.22145  0.16511     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     14   3.53238  0.11897  3.57752  2.90072     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     15   3.17670  2.65106  3.22145  0.16511     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     16   3.00689  3.67468  0.10808  3.58855     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     17   3.17670  2.65106  3.22145  0.16511     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     18   3.00689  3.67468  0.10808  3.58855     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     19   3.17670  2.65106  3.22145  0.16511     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     20   3.00689  3.67468  0.10808  3.58855     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     21   3.00689  3.67468  0.10808  3.58855     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     22   3.00689  3.67468  0.10808  3.58855     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     23   3.00689  3.67468  0.10808  3.58855     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     24   3.17670  2.65106  3.22145  0.16511     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     25   0.13100  3.46667  2.85777  3.37664     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     26   3.53238  0.11897  3.57752  2.90072     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     27   0.13100  3.46667  2.85777  3.37664     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     28   3.53238  0.11897  3.57752  2.90072     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     29   0.13100  3.46667  2.85777  3.37664     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     30   3.17670  2.65106  3.22145  0.16511     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     31   3.00689  3.67468  0.10808  3.58855     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     32   3.00689  3.67468  0.10808  3.58855     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     33   3.17670  2.65106  3.22145  0.16511     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     34   3.17670  2.65106  3.22145  0.16511     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     35   3.00689  3.67468  0.10808  3.58855     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     36   0.13100  3.46667  2.85777  3.37664     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     37   3.00689  3.67468  0.10808  3.58855     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     38   3.17670  2.65106  3.22145  0.16511     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     39   3.00689  3.67468  0.10808  3.58855     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     40   3.17670  2.65106  3.22145  0.16511     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     41   3.53238  0.11897  3.57752  2.90072     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     42   3.00689  3.67468  0.10808  3.58855     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     43   3.17670  2.65106  3.22145  0.16511     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     44   3.17670  2.65106  3.22145  0.16511     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
+     45   0.13100  3.46667  2.85777  3.37664     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01768  4.04401        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fifty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:51:15 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1066684627
+STATS LOCAL MSV       -7.5812  0.72751
+STATS LOCAL VITERBI   -8.5194  0.72751
+STATS LOCAL FORWARD   -3.2857  0.72751
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92302  1.24002  1.12282  1.43089
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:34:26 2012
+NSEQ  15
+EFFN  3.533936
+CKSUM 1571947734
+STATS LOCAL MSV       -7.1684  0.71932
+STATS LOCAL VITERBI   -7.7256  0.71932
+STATS LOCAL FORWARD   -4.1697  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.65608  1.33859  1.13998  1.48248
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  0.00000        *
+      1   2.99255  3.65360  0.11020  3.56520      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+      2   3.50820  0.12160  3.55441  2.88335      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+      3   3.50820  0.12160  3.55441  2.88335      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+      4   2.10974  3.16236  0.23737  3.04268      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+      5   3.15503  2.63732  3.20062  0.16833      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+      6   0.13357  3.44557  2.84418  3.35349      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+      7   2.99255  3.65360  0.11020  3.56520      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+      8   2.99255  3.65360  0.11020  3.56520      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+      9   0.13357  3.44557  2.84418  3.35349      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     10   2.51458  2.79731  0.31083  2.07712     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     11   3.15503  2.63732  3.20062  0.16833     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     12   3.50820  0.12160  3.55441  2.88335     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     13   3.50820  0.12160  3.55441  2.88335     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     14   3.15503  2.63732  3.20062  0.16833     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     15   0.13357  3.44557  2.84418  3.35349     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     16   2.99970  0.26047  3.06184  2.01961     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     17   3.50820  0.12160  3.55441  2.88335     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     18   3.50820  0.12160  3.55441  2.88335     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     19   3.15503  2.63732  3.20062  0.16833     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     20   0.53351  2.65200  1.33972  2.51297     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     21   2.95831  0.27708  3.02151  1.95635     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     22   2.99255  3.65360  0.11020  3.56520     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     23   2.99255  3.65360  0.11020  3.56520     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     24   3.50820  0.12160  3.55441  2.88335     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     25   0.13357  3.44557  2.84418  3.35349     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     26   3.50820  0.12160  3.55441  2.88335     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     27   0.13357  3.44557  2.84418  3.35349     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     28   3.15503  2.63732  3.20062  0.16833     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     29   3.50820  0.12160  3.55441  2.88335     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     30   3.15503  2.63732  3.20062  0.16833     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     31   2.99255  3.65360  0.11020  3.56520     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     32   2.99255  3.65360  0.11020  3.56520     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     33   3.15503  2.63732  3.20062  0.16833     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     34   3.15503  2.63732  3.20062  0.16833     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     35   2.99255  3.65360  0.11020  3.56520     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     36   0.13357  3.44557  2.84418  3.35349     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     37   2.99255  3.65360  0.11020  3.56520     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     38   2.99255  3.65360  0.11020  3.56520     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     39   2.99255  3.65360  0.11020  3.56520     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     40   3.15503  2.63732  3.20062  0.16833     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     41   3.50820  0.12160  3.55441  2.88335     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     42   2.99255  3.65360  0.11020  3.56520     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     43   3.15503  2.63732  3.20062  0.16833     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     44   2.99255  3.65360  0.11020  3.56520     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
+     45   0.13357  3.44557  2.84418  3.35349     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01791  4.03139        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortya_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:45:07 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 347263349
+STATS LOCAL MSV       -7.4224  0.72886
+STATS LOCAL VITERBI   -8.2750  0.72886
+STATS LOCAL FORWARD   -3.5290  0.72886
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.51640  1.56418  1.43422  1.09980
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:45:12 2012
+NSEQ  21
+EFFN  3.652954
+CKSUM 2037448344
+STATS LOCAL MSV       -7.7448  0.71932
+STATS LOCAL VITERBI   -7.7103  0.71932
+STATS LOCAL FORWARD   -4.4879  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34393  1.57885  1.68779  1.05544
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  0.00000        *
+      1   3.54809  0.11729  3.59253  2.91198      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+      2   0.12935  3.48040  2.86661  3.39172      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+      3   2.63410  1.48888  2.69945  0.45358      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+      4   3.01616  3.68835  0.10672  3.60370      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+      5   3.01616  3.68835  0.10672  3.60370      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+      6   0.12935  3.48040  2.86661  3.39172      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+      7   3.54809  0.11729  3.59253  2.91198      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+      8   0.12935  3.48040  2.86661  3.39172      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+      9   3.54809  0.11729  3.59253  2.91198      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     10   3.19086  2.66004  3.23506  0.16304     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     11   3.19086  2.66004  3.23506  0.16304     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     12   3.54809  0.11729  3.59253  2.91198     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     13   2.67383  2.44140  2.20688  0.30934     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     14   3.01616  3.68835  0.10672  3.60370     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     15   3.19086  2.66004  3.23506  0.16304     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     16   0.30858  2.96134  1.86288  2.83816     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     17   3.19086  2.66004  3.23506  0.16304     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     18   3.54809  0.11729  3.59253  2.91198     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     19   3.19086  2.66004  3.23506  0.16304     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     20   3.01616  3.68835  0.10672  3.60370     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     21   3.19086  2.66004  3.23506  0.16304     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     22   3.01616  3.68835  0.10672  3.60370     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     23   3.54809  0.11729  3.59253  2.91198     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     24   3.19086  2.66004  3.23506  0.16304     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     25   0.12935  3.48040  2.86661  3.39172     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     26   3.54809  0.11729  3.59253  2.91198     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     27   0.12935  3.48040  2.86661  3.39172     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     28   3.19086  2.66004  3.23506  0.16304     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     29   3.19086  2.66004  3.23506  0.16304     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     30   3.19086  2.66004  3.23506  0.16304     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     31   3.01616  3.68835  0.10672  3.60370     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     32   3.19086  2.66004  3.23506  0.16304     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     33   3.19086  2.66004  3.23506  0.16304     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     34   3.19086  2.66004  3.23506  0.16304     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     35   3.54809  0.11729  3.59253  2.91198     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     36   0.12935  3.48040  2.86661  3.39172     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     37   3.01616  3.68835  0.10672  3.60370     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     38   3.19086  2.66004  3.23506  0.16304     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     39   0.12935  3.48040  2.86661  3.39172     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     40   3.19086  2.66004  3.23506  0.16304     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     41   0.12935  3.48040  2.86661  3.39172     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     42   3.19086  2.66004  3.23506  0.16304     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     43   0.12935  3.48040  2.86661  3.39172     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     44   0.12935  3.48040  2.86661  3.39172     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
+     45   0.12935  3.48040  2.86661  3.39172     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01754  4.05230        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:45:18 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1875509194
+STATS LOCAL MSV       -7.4593  0.72883
+STATS LOCAL VITERBI   -8.2848  0.72883
+STATS LOCAL FORWARD   -3.4483  0.72883
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45589  1.50091  1.49628  1.13969
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyd_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:45:24 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2094167418
+STATS LOCAL MSV       -7.2815  0.72957
+STATS LOCAL VITERBI   -8.1713  0.72957
+STATS LOCAL FORWARD   -3.4471  0.72957
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21312  1.69555  1.55125  1.18009
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   1.01448  1.11006  1.95471  1.79419     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortye_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:45:29 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3941219966
+STATS LOCAL MSV       -8.0155  0.72136
+STATS LOCAL VITERBI   -7.9080  0.72136
+STATS LOCAL FORWARD   -3.8167  0.72136
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.38221  1.76473  1.47045  1.05577
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   1.34853  2.58976  0.54705  2.44542      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   0.15719  3.27118  2.73043  3.16274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   3.30705  0.14631  3.36166  2.73626     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.86982  3.47591  0.13017  3.36931     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.97980  2.52563  3.03204  0.19727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyeighta_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:50:28 2012
+NSEQ  24
+EFFN  3.600586
+CKSUM 339122880
+STATS LOCAL MSV       -7.1812  0.71931
+STATS LOCAL VITERBI   -7.6039  0.71931
+STATS LOCAL FORWARD   -4.3803  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.90120  1.55283  1.08317  1.20250
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  0.00000        *
+      1   2.67626  3.05106  0.22851  2.42866      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+      2   3.00592  3.67326  0.10822  3.58698      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+      3   3.53074  0.11914  3.57596  2.89955      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+      4   3.00592  3.67326  0.10822  3.58698      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+      5   3.53074  0.11914  3.57596  2.89955      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+      6   3.17523  2.65013  3.22004  0.16532      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+      7   3.53074  0.11914  3.57596  2.89955      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+      8   3.17523  2.65013  3.22004  0.16532      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+      9   2.54397  0.59494  2.61524  1.21503      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     10   3.00592  3.67326  0.10822  3.58698     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     11   3.00592  3.67326  0.10822  3.58698     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     12   3.17523  2.65013  3.22004  0.16532     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     13   2.94163  2.11334  2.99577  0.25310     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     14   0.13117  3.46525  2.85686  3.37508     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     15   3.17523  2.65013  3.22004  0.16532     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     16   0.13117  3.46525  2.85686  3.37508     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     17   3.53074  0.11914  3.57596  2.89955     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     18   3.53074  0.11914  3.57596  2.89955     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     19   3.00592  3.67326  0.10822  3.58698     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     20   3.00592  3.67326  0.10822  3.58698     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     21   3.00592  3.67326  0.10822  3.58698     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     22   0.13117  3.46525  2.85686  3.37508     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     23   3.00592  3.67326  0.10822  3.58698     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     24   3.53074  0.11914  3.57596  2.89955     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     25   0.13117  3.46525  2.85686  3.37508     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     26   3.17523  2.65013  3.22004  0.16532     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     27   3.00592  3.67326  0.10822  3.58698     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     28   3.17523  2.65013  3.22004  0.16532     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     29   3.53074  0.11914  3.57596  2.89955     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     30   3.17523  2.65013  3.22004  0.16532     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     31   3.00592  3.67326  0.10822  3.58698     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     32   3.17523  2.65013  3.22004  0.16532     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     33   3.53074  0.11914  3.57596  2.89955     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     34   3.17523  2.65013  3.22004  0.16532     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     35   3.00592  3.67326  0.10822  3.58698     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     36   0.13117  3.46525  2.85686  3.37508     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     37   3.00592  3.67326  0.10822  3.58698     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     38   3.17523  2.65013  3.22004  0.16532     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     39   3.00592  3.67326  0.10822  3.58698     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     40   3.17523  2.65013  3.22004  0.16532     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     41   3.17523  2.65013  3.22004  0.16532     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     42   3.00592  3.67326  0.10822  3.58698     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     43   3.00592  3.67326  0.10822  3.58698     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     44   3.17523  2.65013  3.22004  0.16532     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
+     45   1.27511  2.19060  2.26638  0.68307     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01770  4.04315        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyeightb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:50:35 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3925285296
+STATS LOCAL MSV       -7.6206  0.72748
+STATS LOCAL VITERBI   -8.1867  0.72748
+STATS LOCAL FORWARD   -3.4877  0.72748
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.83239  1.19294  1.16979  1.48630
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyeightc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:50:39 2012
+NSEQ  5
+EFFN  3.159180
+CKSUM 993596914
+STATS LOCAL MSV       -8.2623  0.71933
+STATS LOCAL VITERBI   -7.7665  0.71933
+STATS LOCAL FORWARD   -4.2175  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92935  1.26519  1.09230  1.43915
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  0.00000        *
+      1   2.90962  3.53288  0.12335  3.43193      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+      2   2.90962  3.53288  0.12335  3.43193      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+      3   3.37101  0.13787  3.42306  2.78357      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+      4   2.90962  3.53288  0.12335  3.43193      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+      5   3.37101  0.13787  3.42306  2.78357      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+      6   3.03462  2.56074  3.08483  0.18763      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+      7   3.37101  0.13787  3.42306  2.78357      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+      8   3.03462  2.56074  3.08483  0.18763      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+      9   3.37101  0.13787  3.42306  2.78357      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     10   2.90962  3.53288  0.12335  3.43193     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     11   2.90962  3.53288  0.12335  3.43193     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     12   3.03462  2.56074  3.08483  0.18763     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     13   3.37101  0.13787  3.42306  2.78357     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     14   0.14921  3.32646  2.76683  3.22308     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     15   0.14921  3.32646  2.76683  3.22308     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     16   2.90962  3.53288  0.12335  3.43193     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     17   3.37101  0.13787  3.42306  2.78357     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     18   3.37101  0.13787  3.42306  2.78357     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     19   2.90962  3.53288  0.12335  3.43193     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     20   2.90962  3.53288  0.12335  3.43193     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     21   2.90962  3.53288  0.12335  3.43193     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     22   0.14921  3.32646  2.76683  3.22308     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     23   2.90962  3.53288  0.12335  3.43193     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     24   3.37101  0.13787  3.42306  2.78357     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     25   0.14921  3.32646  2.76683  3.22308     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     26   3.37101  0.13787  3.42306  2.78357     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     27   2.90962  3.53288  0.12335  3.43193     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     28   3.03462  2.56074  3.08483  0.18763     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     29   3.37101  0.13787  3.42306  2.78357     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     30   3.03462  2.56074  3.08483  0.18763     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     31   2.90962  3.53288  0.12335  3.43193     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     32   3.03462  2.56074  3.08483  0.18763     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     33   3.37101  0.13787  3.42306  2.78357     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     34   3.03462  2.56074  3.08483  0.18763     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     35   2.90962  3.53288  0.12335  3.43193     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     36   0.14921  3.32646  2.76683  3.22308     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     37   2.90962  3.53288  0.12335  3.43193     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     38   3.37101  0.13787  3.42306  2.78357     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     39   2.90962  3.53288  0.12335  3.43193     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     40   3.03462  2.56074  3.08483  0.18763     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     41   3.37101  0.13787  3.42306  2.78357     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     42   3.03462  2.56074  3.08483  0.18763     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     43   2.90962  3.53288  0.12335  3.43193     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     44   3.03462  2.56074  3.08483  0.18763     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     45   3.03462  2.56074  3.08483  0.18763     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01920  3.96256        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyeightd_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:50:46 2012
+NSEQ  4
+EFFN  3.472656
+CKSUM 2657486391
+STATS LOCAL MSV       -7.5605  0.71932
+STATS LOCAL VITERBI   -7.7169  0.71932
+STATS LOCAL FORWARD   -4.4119  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.88361  1.29724  1.11506  1.39926
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  0.00000        *
+      1   2.97992  3.63506  0.11211  3.54469      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+      2   2.97992  3.63506  0.11211  3.54469      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+      3   3.48700  0.12396  3.53414  2.86806      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+      4   2.97992  3.63506  0.11211  3.54469      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+      5   3.48700  0.12396  3.53414  2.86806      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+      6   3.13614  2.62533  3.18246  0.17120      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+      7   3.13614  2.62533  3.18246  0.17120      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+      8   3.13614  2.62533  3.18246  0.17120      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+      9   3.48700  0.12396  3.53414  2.86806      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     10   2.97992  3.63506  0.11211  3.54469     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     11   2.97992  3.63506  0.11211  3.54469     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     12   3.13614  2.62533  3.18246  0.17120     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     13   0.13586  3.42710  2.83226  3.33324     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     14   0.13586  3.42710  2.83226  3.33324     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     15   0.83642  2.54006  0.92443  2.39556     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     16   2.97992  3.63506  0.11211  3.54469     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     17   3.48700  0.12396  3.53414  2.86806     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     18   3.48700  0.12396  3.53414  2.86806     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     19   2.97992  3.63506  0.11211  3.54469     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     20   2.97992  3.63506  0.11211  3.54469     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     21   2.97992  3.63506  0.11211  3.54469     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     22   0.13586  3.42710  2.83226  3.33324     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     23   2.97992  3.63506  0.11211  3.54469     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     24   3.48700  0.12396  3.53414  2.86806     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     25   0.13586  3.42710  2.83226  3.33324     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     26   3.48700  0.12396  3.53414  2.86806     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     27   2.97992  3.63506  0.11211  3.54469     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     28   3.13614  2.62533  3.18246  0.17120     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     29   3.48700  0.12396  3.53414  2.86806     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     30   3.13614  2.62533  3.18246  0.17120     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     31   2.97992  3.63506  0.11211  3.54469     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     32   3.13614  2.62533  3.18246  0.17120     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     33   3.48700  0.12396  3.53414  2.86806     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     34   3.13614  2.62533  3.18246  0.17120     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     35   2.97992  3.63506  0.11211  3.54469     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     36   0.13586  3.42710  2.83226  3.33324     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     37   2.97992  3.63506  0.11211  3.54469     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     38   3.48700  0.12396  3.53414  2.86806     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     39   2.97992  3.63506  0.11211  3.54469     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     40   3.13614  2.62533  3.18246  0.17120     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     41   3.48700  0.12396  3.53414  2.86806     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     42   3.48700  0.12396  3.53414  2.86806     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     43   2.62567  1.55366  2.69076  0.43339     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     44   2.62567  1.55366  2.69076  0.43339     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     45   3.13614  2.62533  3.18246  0.17120     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01811  4.02046        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyeighte_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:50:51 2012
+NSEQ  8
+EFFN  3.214844
+CKSUM 964389477
+STATS LOCAL MSV       -8.0488  0.71933
+STATS LOCAL VITERBI   -7.8773  0.71933
+STATS LOCAL FORWARD   -4.3191  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.19308  1.31777  1.09283  1.25376
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  0.00000        *
+      1   2.92285  3.55196  0.12115  3.45295      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      2   2.92285  3.55196  0.12115  3.45295      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      3   3.39256  0.13515  3.44371  2.79938      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      4   2.92285  3.55196  0.12115  3.45295      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      5   3.39256  0.13515  3.44371  2.79938      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      6   3.05326  2.57263  3.10276  0.18448      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      7   3.39256  0.13515  3.44371  2.79938      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      8   3.05326  2.57263  3.10276  0.18448      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      9   3.39256  0.13515  3.44371  2.79938      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     10   2.92285  3.55196  0.12115  3.45295     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     11   2.92285  3.55196  0.12115  3.45295     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     12   3.05326  2.57263  3.10276  0.18448     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     13   3.05326  2.57263  3.10276  0.18448     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     14   3.05326  2.57263  3.10276  0.18448     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     15   3.05326  2.57263  3.10276  0.18448     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     16   2.92285  3.55196  0.12115  3.45295     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     17   3.39256  0.13515  3.44371  2.79938     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     18   3.39256  0.13515  3.44371  2.79938     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     19   2.92285  3.55196  0.12115  3.45295     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     20   2.92285  3.55196  0.12115  3.45295     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     21   2.92285  3.55196  0.12115  3.45295     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     22   0.14663  3.34511  2.77903  3.24347     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     23   2.92285  3.55196  0.12115  3.45295     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     24   3.39256  0.13515  3.44371  2.79938     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     25   0.14663  3.34511  2.77903  3.24347     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     26   3.39256  0.13515  3.44371  2.79938     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     27   2.92285  3.55196  0.12115  3.45295     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     28   3.05326  2.57263  3.10276  0.18448     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     29   3.39256  0.13515  3.44371  2.79938     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     30   3.05326  2.57263  3.10276  0.18448     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     31   2.92285  3.55196  0.12115  3.45295     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     32   3.05326  2.57263  3.10276  0.18448     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     33   3.39256  0.13515  3.44371  2.79938     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     34   3.05326  2.57263  3.10276  0.18448     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     35   2.92285  3.55196  0.12115  3.45295     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     36   0.14663  3.34511  2.77903  3.24347     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     37   2.92285  3.55196  0.12115  3.45295     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     38   3.39256  0.13515  3.44371  2.79938     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     39   2.92285  3.55196  0.12115  3.45295     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     40   3.05326  2.57263  3.10276  0.18448     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     41   3.05326  2.57263  3.10276  0.18448     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     42   3.39256  0.13515  3.44371  2.79938     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     43   2.92285  3.55196  0.12115  3.45295     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     44   3.05326  2.57263  3.10276  0.18448     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     45   3.05326  2.57263  3.10276  0.18448     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01899  3.97309        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyeightf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:50:56 2012
+NSEQ  11
+EFFN  3.316650
+CKSUM 2204535920
+STATS LOCAL MSV       -8.0261  0.71932
+STATS LOCAL VITERBI   -7.9269  0.71932
+STATS LOCAL FORWARD   -4.2355  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.86940  1.25480  1.19492  1.35510
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  0.00000        *
+      1   2.94618  3.58579  0.11737  3.49026      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      2   2.94618  3.58579  0.11737  3.49026      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      3   3.43088  0.13047  3.48043  2.82738      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      4   2.94618  3.58579  0.11737  3.49026      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      5   3.43088  0.13047  3.48043  2.82738      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      6   3.08666  2.59390  3.13489  0.17899      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      7   3.43088  0.13047  3.48043  2.82738      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      8   3.08666  2.59390  3.13489  0.17899      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      9   3.43088  0.13047  3.48043  2.82738      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     10   2.94618  3.58579  0.11737  3.49026     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     11   2.94618  3.58579  0.11737  3.49026     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     12   3.08666  2.59390  3.13489  0.17899     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     13   3.08666  2.59390  3.13489  0.17899     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     14   3.08666  2.59390  3.13489  0.17899     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     15   3.43088  0.13047  3.48043  2.82738     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     16   0.14215  3.37833  2.80067  3.27981     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     17   3.43088  0.13047  3.48043  2.82738     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     18   3.43088  0.13047  3.48043  2.82738     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     19   2.94618  3.58579  0.11737  3.49026     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     20   2.94618  3.58579  0.11737  3.49026     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     21   2.94618  3.58579  0.11737  3.49026     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     22   0.14215  3.37833  2.80067  3.27981     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     23   2.94618  3.58579  0.11737  3.49026     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     24   3.43088  0.13047  3.48043  2.82738     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     25   0.14215  3.37833  2.80067  3.27981     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     26   3.43088  0.13047  3.48043  2.82738     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     27   2.94618  3.58579  0.11737  3.49026     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     28   3.08666  2.59390  3.13489  0.17899     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     29   3.43088  0.13047  3.48043  2.82738     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     30   3.08666  2.59390  3.13489  0.17899     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     31   2.94618  3.58579  0.11737  3.49026     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     32   3.08666  2.59390  3.13489  0.17899     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     33   3.43088  0.13047  3.48043  2.82738     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     34   3.08666  2.59390  3.13489  0.17899     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     35   2.94618  3.58579  0.11737  3.49026     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     36   0.14215  3.37833  2.80067  3.27981     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     37   2.94618  3.58579  0.11737  3.49026     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     38   3.43088  0.13047  3.48043  2.82738     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     39   0.14215  3.37833  2.80067  3.27981     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     40   3.08666  2.59390  3.13489  0.17899     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     41   3.08666  2.59390  3.13489  0.17899     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     42   3.43088  0.13047  3.48043  2.82738     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     43   2.94618  3.58579  0.11737  3.49026     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     44   0.57713  2.32692  2.24167  1.44981     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     45   3.08666  2.59390  3.13489  0.17899     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01863  3.99206        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:49:50 2012
+NSEQ  4
+EFFN  3.167969
+CKSUM 3104217627
+STATS LOCAL MSV       -8.1787  0.71934
+STATS LOCAL VITERBI   -7.9801  0.71934
+STATS LOCAL FORWARD   -3.9468  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.19556  1.04296  1.09808  1.59562
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  0.00000        *
+      1   3.37444  0.13743  3.42635  2.78609      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      2   2.91173  3.53592  0.12299  3.43528      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      3   3.37444  0.13743  3.42635  2.78609      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      4   2.56050  1.56301  2.62680  0.44485      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      5   3.37444  0.13743  3.42635  2.78609      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      6   3.37444  0.13743  3.42635  2.78609      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      7   3.37444  0.13743  3.42635  2.78609      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      8   2.91173  3.53592  0.12299  3.43528      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      9   2.91173  3.53592  0.12299  3.43528      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     10   2.91173  3.53592  0.12299  3.43528     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     11   2.91173  3.53592  0.12299  3.43528     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     12   3.03758  2.56263  3.08768  0.18713     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     13   3.37444  0.13743  3.42635  2.78609     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     14   3.03758  2.56263  3.08768  0.18713     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     15   3.37444  0.13743  3.42635  2.78609     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     16   3.37444  0.13743  3.42635  2.78609     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     17   3.03758  2.56263  3.08768  0.18713     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     18   3.37444  0.13743  3.42635  2.78609     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     19   2.91173  3.53592  0.12299  3.43528     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     20   2.91173  3.53592  0.12299  3.43528     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     21   2.91173  3.53592  0.12299  3.43528     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     22   0.14880  3.32943  2.76878  3.22633     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     23   2.91173  3.53592  0.12299  3.43528     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     24   3.37444  0.13743  3.42635  2.78609     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     25   0.14880  3.32943  2.76878  3.22633     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     26   2.91173  3.53592  0.12299  3.43528     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     27   2.91173  3.53592  0.12299  3.43528     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     28   3.03758  2.56263  3.08768  0.18713     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     29   3.37444  0.13743  3.42635  2.78609     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     30   3.03758  2.56263  3.08768  0.18713     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     31   2.91173  3.53592  0.12299  3.43528     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     32   3.03758  2.56263  3.08768  0.18713     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     33   3.37444  0.13743  3.42635  2.78609     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     34   3.37444  0.13743  3.42635  2.78609     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     35   2.91173  3.53592  0.12299  3.43528     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     36   0.14880  3.32943  2.76878  3.22633     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     37   2.91173  3.53592  0.12299  3.43528     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     38   3.37444  0.13743  3.42635  2.78609     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     39   2.91173  3.53592  0.12299  3.43528     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     40   3.03758  2.56263  3.08768  0.18713     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     41   3.37444  0.13743  3.42635  2.78609     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     42   3.03758  2.56263  3.08768  0.18713     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     43   2.91173  3.53592  0.12299  3.43528     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     44   3.37444  0.13743  3.42635  2.78609     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     45   3.37444  0.13743  3.42635  2.78609     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01917  3.96423        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:49:38 2012
+NSEQ  6
+EFFN  3.161133
+CKSUM 3736386509
+STATS LOCAL MSV       -7.9213  0.71932
+STATS LOCAL VITERBI   -7.8583  0.71932
+STATS LOCAL FORWARD   -3.8470  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92961  1.26295  1.09548  1.43717
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  0.00000        *
+      1   3.37178  0.13777  3.42379  2.78413      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+      2   3.03528  2.56116  3.08546  0.18752      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+      3   3.37178  0.13777  3.42379  2.78413      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+      4   3.03528  2.56116  3.08546  0.18752      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+      5   3.37178  0.13777  3.42379  2.78413      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+      6   2.91009  3.53355  0.12327  3.43268      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+      7   2.91009  3.53355  0.12327  3.43268      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+      8   2.91009  3.53355  0.12327  3.43268      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+      9   3.37178  0.13777  3.42379  2.78413      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     10   3.37178  0.13777  3.42379  2.78413     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     11   3.37178  0.13777  3.42379  2.78413     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     12   3.03528  2.56116  3.08546  0.18752     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     13   2.91009  3.53355  0.12327  3.43268     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     14   2.91009  3.53355  0.12327  3.43268     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     15   3.03528  2.56116  3.08546  0.18752     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     16   3.37178  0.13777  3.42379  2.78413     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     17   3.37178  0.13777  3.42379  2.78413     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     18   3.37178  0.13777  3.42379  2.78413     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     19   2.91009  3.53355  0.12327  3.43268     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     20   2.91009  3.53355  0.12327  3.43268     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     21   2.91009  3.53355  0.12327  3.43268     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     22   0.14912  3.32712  2.76727  3.22381     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     23   2.91009  3.53355  0.12327  3.43268     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     24   3.37178  0.13777  3.42379  2.78413     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     25   0.14912  3.32712  2.76727  3.22381     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     26   3.03528  2.56116  3.08546  0.18752     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     27   2.91009  3.53355  0.12327  3.43268     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     28   3.03528  2.56116  3.08546  0.18752     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     29   3.37178  0.13777  3.42379  2.78413     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     30   3.03528  2.56116  3.08546  0.18752     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     31   2.91009  3.53355  0.12327  3.43268     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     32   3.03528  2.56116  3.08546  0.18752     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     33   3.37178  0.13777  3.42379  2.78413     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     34   3.03528  2.56116  3.08546  0.18752     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     35   2.91009  3.53355  0.12327  3.43268     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     36   0.14912  3.32712  2.76727  3.22381     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     37   2.91009  3.53355  0.12327  3.43268     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     38   2.91009  3.53355  0.12327  3.43268     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     39   2.91009  3.53355  0.12327  3.43268     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     40   3.03528  2.56116  3.08546  0.18752     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     41   3.37178  0.13777  3.42379  2.78413     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     42   2.91009  3.53355  0.12327  3.43268     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     43   0.14912  3.32712  2.76727  3.22381     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     44   0.14912  3.32712  2.76727  3.22381     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
+     45   3.03528  2.56116  3.08546  0.18752     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01919  3.96293        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:51:08 2012
+NSEQ  15
+EFFN  3.211670
+CKSUM 3750062705
+STATS LOCAL MSV       -8.2153  0.71932
+STATS LOCAL VITERBI   -7.8337  0.71932
+STATS LOCAL FORWARD   -4.0703  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.05372  1.19574  1.09436  1.45026
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  0.00000        *
+      1   3.39134  0.13530  3.44255  2.79849      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+      2   2.92210  3.55089  0.12127  3.45176      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+      3   3.39134  0.13530  3.44255  2.79849      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+      4   3.39134  0.13530  3.44255  2.79849      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+      5   3.39134  0.13530  3.44255  2.79849      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+      6   3.05221  2.57196  3.10175  0.18466      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+      7   3.39134  0.13530  3.44255  2.79849      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+      8   2.92210  3.55089  0.12127  3.45176      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+      9   2.92210  3.55089  0.12127  3.45176      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     10   3.05221  2.57196  3.10175  0.18466     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     11   3.05221  2.57196  3.10175  0.18466     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     12   2.64062  1.70487  2.70448  0.38569     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     13   2.92210  3.55089  0.12127  3.45176     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     14   0.14677  3.34406  2.77834  3.24231     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     15   0.14677  3.34406  2.77834  3.24231     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     16   2.92210  3.55089  0.12127  3.45176     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     17   3.39134  0.13530  3.44255  2.79849     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     18   3.39134  0.13530  3.44255  2.79849     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     19   2.92210  3.55089  0.12127  3.45176     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     20   2.92210  3.55089  0.12127  3.45176     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     21   2.92210  3.55089  0.12127  3.45176     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     22   2.92210  3.55089  0.12127  3.45176     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     23   2.92210  3.55089  0.12127  3.45176     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     24   3.39134  0.13530  3.44255  2.79849     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     25   0.14677  3.34406  2.77834  3.24231     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     26   3.39134  0.13530  3.44255  2.79849     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     27   2.92210  3.55089  0.12127  3.45176     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     28   3.05221  2.57196  3.10175  0.18466     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     29   3.39134  0.13530  3.44255  2.79849     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     30   3.05221  2.57196  3.10175  0.18466     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     31   2.92210  3.55089  0.12127  3.45176     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     32   3.05221  2.57196  3.10175  0.18466     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     33   3.39134  0.13530  3.44255  2.79849     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     34   3.05221  2.57196  3.10175  0.18466     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     35   2.92210  3.55089  0.12127  3.45176     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     36   0.14677  3.34406  2.77834  3.24231     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     37   2.92210  3.55089  0.12127  3.45176     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     38   3.39134  0.13530  3.44255  2.79849     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     39   2.92210  3.55089  0.12127  3.45176     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     40   3.05221  2.57196  3.10175  0.18466     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     41   3.39134  0.13530  3.44255  2.79849     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     42   3.39134  0.13530  3.44255  2.79849     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     43   2.92210  3.55089  0.12127  3.45176     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     44   3.05221  2.57196  3.10175  0.18466     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
+     45   3.05221  2.57196  3.10175  0.18466     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01901  3.97249        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyonea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:45:44 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3351881953
+STATS LOCAL MSV       -7.4836  0.72751
+STATS LOCAL VITERBI   -8.3118  0.72751
+STATS LOCAL FORWARD   -3.4363  0.72751
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92284  1.23828  1.12440  1.43096
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyoneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:45:56 2012
+NSEQ  68
+EFFN  3.523682
+CKSUM 178105420
+STATS LOCAL MSV       -7.2532  0.71932
+STATS LOCAL VITERBI   -7.8642  0.71932
+STATS LOCAL FORWARD   -3.8274  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.33793  1.03819  1.08795  1.54895
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  0.00000        *
+      1   3.50468  0.12199  3.55105  2.88082      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+      2   2.99046  3.65053  0.11052  3.56181      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+      3   2.99046  3.65053  0.11052  3.56181      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+      4   3.50468  0.12199  3.55105  2.88082      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+      5   3.50468  0.12199  3.55105  2.88082      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+      6   3.50468  0.12199  3.55105  2.88082      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+      7   3.50468  0.12199  3.55105  2.88082      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+      8   2.99046  3.65053  0.11052  3.56181      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+      9   2.99046  3.65053  0.11052  3.56181      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     10   2.99046  3.65053  0.11052  3.56181     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     11   3.15189  2.63533  3.19760  0.16881     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     12   2.44366  0.84925  2.51567  0.90483     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     13   2.09412  0.42212  2.19206  2.21199     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     14   3.50468  0.12199  3.55105  2.88082     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     15   3.15189  2.63533  3.19760  0.16881     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     16   3.50468  0.12199  3.55105  2.88082     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     17   3.50468  0.12199  3.55105  2.88082     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     18   3.50468  0.12199  3.55105  2.88082     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     19   2.99046  3.65053  0.11052  3.56181     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     20   2.99046  3.65053  0.11052  3.56181     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     21   2.99046  3.65053  0.11052  3.56181     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     22   2.99046  3.65053  0.11052  3.56181     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     23   3.50468  0.12199  3.55105  2.88082     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     24   3.15189  2.63533  3.19760  0.16881     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     25   0.13394  3.44251  2.84220  3.35013     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     26   3.50468  0.12199  3.55105  2.88082     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     27   2.99046  3.65053  0.11052  3.56181     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     28   2.92172  0.23620  2.53930  2.55598     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     29   3.50468  0.12199  3.55105  2.88082     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     30   3.15189  2.63533  3.19760  0.16881     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     31   2.99046  3.65053  0.11052  3.56181     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     32   3.15189  2.63533  3.19760  0.16881     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     33   3.34624  0.15613  3.39785  2.57846     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     34   3.15189  2.63533  3.19760  0.16881     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     35   2.20651  3.22353  0.21643  3.10742     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     36   0.13394  3.44251  2.84220  3.35013     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     37   2.99046  3.65053  0.11052  3.56181     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     38   2.99046  3.65053  0.11052  3.56181     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     39   2.99046  3.65053  0.11052  3.56181     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     40   3.15189  2.63533  3.19760  0.16881     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     41   3.50468  0.12199  3.55105  2.88082     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     42   2.99046  3.65053  0.11052  3.56181     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     43   3.50468  0.12199  3.55105  2.88082     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     44   3.15189  2.63533  3.19760  0.16881     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
+     45   1.98377  2.36627  2.60703  0.36404     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01794  4.02957        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyoned_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:46:22 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2629441741
+STATS LOCAL MSV       -7.8868  0.72036
+STATS LOCAL VITERBI   -7.8389  0.72036
+STATS LOCAL FORWARD   -3.5128  0.72036
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.79123  1.15229  1.19955  1.53246
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   3.30705  0.14631  3.36166  2.73626     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   1.31633  2.11286  2.18717  0.69564     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyonee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:46:29 2012
+NSEQ  8
+EFFN  3.199219
+CKSUM 1510523105
+STATS LOCAL MSV       -8.0942  0.71931
+STATS LOCAL VITERBI   -7.7144  0.71931
+STATS LOCAL FORWARD   -3.8492  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92718  1.19573  1.04178  1.61378
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  0.00000        *
+      1   3.38655  0.13590  3.43796  2.79498      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      2   2.91917  3.54665  0.12176  3.44709      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      3   2.91917  3.54665  0.12176  3.44709      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      4   3.38655  0.13590  3.43796  2.79498      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      5   3.38655  0.13590  3.43796  2.79498      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      6   3.04806  2.56931  3.09775  0.18535      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      7   3.38655  0.13590  3.43796  2.79498      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      8   2.91917  3.54665  0.12176  3.44709      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      9   2.91917  3.54665  0.12176  3.44709      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     10   2.91917  3.54665  0.12176  3.44709     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     11   3.04806  2.56931  3.09775  0.18535     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     12   0.14734  3.33991  2.77563  3.23778     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     13   0.14734  3.33991  2.77563  3.23778     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     14   3.38655  0.13590  3.43796  2.79498     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     15   3.04806  2.56931  3.09775  0.18535     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     16   3.38655  0.13590  3.43796  2.79498     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     17   3.38655  0.13590  3.43796  2.79498     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     18   3.38655  0.13590  3.43796  2.79498     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     19   2.91917  3.54665  0.12176  3.44709     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     20   0.14734  3.33991  2.77563  3.23778     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     21   2.91917  3.54665  0.12176  3.44709     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     22   2.91917  3.54665  0.12176  3.44709     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     23   3.38655  0.13590  3.43796  2.79498     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     24   3.38655  0.13590  3.43796  2.79498     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     25   0.14734  3.33991  2.77563  3.23778     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     26   3.38655  0.13590  3.43796  2.79498     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     27   2.91917  3.54665  0.12176  3.44709     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     28   3.04806  2.56931  3.09775  0.18535     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     29   3.38655  0.13590  3.43796  2.79498     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     30   3.04806  2.56931  3.09775  0.18535     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     31   2.91917  3.54665  0.12176  3.44709     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     32   3.04806  2.56931  3.09775  0.18535     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     33   3.38655  0.13590  3.43796  2.79498     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     34   3.04806  2.56931  3.09775  0.18535     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     35   2.91917  3.54665  0.12176  3.44709     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     36   0.14734  3.33991  2.77563  3.23778     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     37   2.91917  3.54665  0.12176  3.44709     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     38   2.91917  3.54665  0.12176  3.44709     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     39   2.91917  3.54665  0.12176  3.44709     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     40   3.04806  2.56931  3.09775  0.18535     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     41   3.38655  0.13590  3.43796  2.79498     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     42   2.91917  3.54665  0.12176  3.44709     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     43   2.91917  3.54665  0.12176  3.44709     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     44   2.43829  1.24940  2.50849  0.60766     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     45   2.91917  3.54665  0.12176  3.44709     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01905  3.97014        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyonef_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:46:34 2012
+NSEQ  8
+EFFN  3.300781
+CKSUM 1006154723
+STATS LOCAL MSV       -8.1502  0.71931
+STATS LOCAL VITERBI   -7.8569  0.71931
+STATS LOCAL FORWARD   -3.8991  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.19096  1.09950  0.99259  1.68991
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  0.00000        *
+      1   3.42500  0.13118  3.47480  2.82309      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      2   2.94261  3.58061  0.11794  3.48454      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      3   2.94261  3.58061  0.11794  3.48454      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      4   3.42500  0.13118  3.47480  2.82309      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      5   2.58757  1.55569  2.65338  0.44108      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      6   3.42500  0.13118  3.47480  2.82309      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      7   3.42500  0.13118  3.47480  2.82309      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      8   2.94261  3.58061  0.11794  3.48454      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+      9   2.94261  3.58061  0.11794  3.48454      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     10   2.94261  3.58061  0.11794  3.48454     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     11   3.08151  2.59063  3.12994  0.17982     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     12   3.42500  0.13118  3.47480  2.82309     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     13   0.14283  3.37323  2.79735  3.27422     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     14   2.63568  0.44340  2.70558  1.51574     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     15   3.08151  2.59063  3.12994  0.17982     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     16   3.42500  0.13118  3.47480  2.82309     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     17   3.42500  0.13118  3.47480  2.82309     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     18   3.42500  0.13118  3.47480  2.82309     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     19   2.94261  3.58061  0.11794  3.48454     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     20   2.94261  3.58061  0.11794  3.48454     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     21   2.94261  3.58061  0.11794  3.48454     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     22   2.94261  3.58061  0.11794  3.48454     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     23   3.42500  0.13118  3.47480  2.82309     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     24   3.42500  0.13118  3.47480  2.82309     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     25   0.14283  3.37323  2.79735  3.27422     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     26   3.42500  0.13118  3.47480  2.82309     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     27   2.94261  3.58061  0.11794  3.48454     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     28   2.58757  1.55569  2.65338  0.44108     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     29   3.42500  0.13118  3.47480  2.82309     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     30   3.08151  2.59063  3.12994  0.17982     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     31   2.94261  3.58061  0.11794  3.48454     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     32   3.08151  2.59063  3.12994  0.17982     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     33   3.42500  0.13118  3.47480  2.82309     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     34   3.08151  2.59063  3.12994  0.17982     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     35   2.94261  3.58061  0.11794  3.48454     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     36   0.14283  3.37323  2.79735  3.27422     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     37   2.94261  3.58061  0.11794  3.48454     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     38   2.94261  3.58061  0.11794  3.48454     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     39   2.94261  3.58061  0.11794  3.48454     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     40   3.08151  2.59063  3.12994  0.17982     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     41   3.42500  0.13118  3.47480  2.82309     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     42   2.94261  3.58061  0.11794  3.48454     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     43   2.94261  3.58061  0.11794  3.48454     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     44   3.42500  0.13118  3.47480  2.82309     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
+     45   2.94261  3.58061  0.11794  3.48454     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01869  3.98913        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyoneg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:46:39 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2752023140
+STATS LOCAL MSV       -8.0112  0.71987
+STATS LOCAL VITERBI   -7.8601  0.71987
+STATS LOCAL FORWARD   -4.0646  0.71987
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.04242  1.15565  1.09893  1.50414
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   3.30705  0.14631  3.36166  2.73626     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   3.30705  0.14631  3.36166  2.73626     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyoneh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:46:46 2012
+NSEQ  11
+EFFN  3.370361
+CKSUM 3371393112
+STATS LOCAL MSV       -7.2193  0.71933
+STATS LOCAL VITERBI   -7.8016  0.71933
+STATS LOCAL FORWARD   -4.0798  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.99517  1.04017  1.08680  1.75262
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  0.00000        *
+      1   3.45055  0.12815  3.49927  2.84168      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+      2   2.95806  3.60310  0.11549  3.50937      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+      3   2.95806  3.60310  0.11549  3.50937      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+      4   3.45055  0.12815  3.49927  2.84168      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+      5   2.42298  1.04864  2.49442  0.73734      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+      6   3.45055  0.12815  3.49927  2.84168      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+      7   2.80636  0.33742  2.87302  1.77528      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+      8   2.95806  3.60310  0.11549  3.50937      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+      9   2.95806  3.60310  0.11549  3.50937      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     10   2.95806  3.60310  0.11549  3.50937     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     11   3.10392  2.60488  3.15149  0.17623     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     12   3.45055  0.12815  3.49927  2.84168     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     13   0.13991  3.39541  2.81175  3.29851     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     14   3.45055  0.12815  3.49927  2.84168     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     15   3.10392  2.60488  3.15149  0.17623     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     16   3.45055  0.12815  3.49927  2.84168     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     17   3.45055  0.12815  3.49927  2.84168     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     18   3.45055  0.12815  3.49927  2.84168     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     19   2.95806  3.60310  0.11549  3.50937     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     20   2.95806  3.60310  0.11549  3.50937     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     21   0.13991  3.39541  2.81175  3.29851     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     22   2.95806  3.60310  0.11549  3.50937     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     23   3.45055  0.12815  3.49927  2.84168     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     24   3.45055  0.12815  3.49927  2.84168     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     25   0.13991  3.39541  2.81175  3.29851     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     26   3.45055  0.12815  3.49927  2.84168     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     27   2.95806  3.60310  0.11549  3.50937     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     28   3.45055  0.12815  3.49927  2.84168     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     29   3.45055  0.12815  3.49927  2.84168     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     30   3.10392  2.60488  3.15149  0.17623     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     31   2.95806  3.60310  0.11549  3.50937     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     32   3.10392  2.60488  3.15149  0.17623     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     33   3.45055  0.12815  3.49927  2.84168     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     34   3.10392  2.60488  3.15149  0.17623     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     35   2.95806  3.60310  0.11549  3.50937     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     36   0.13991  3.39541  2.81175  3.29851     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     37   2.95806  3.60310  0.11549  3.50937     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     38   2.95806  3.60310  0.11549  3.50937     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     39   2.95806  3.60310  0.11549  3.50937     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     40   3.10392  2.60488  3.15149  0.17623     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     41   3.45055  0.12815  3.49927  2.84168     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     42   2.95806  3.60310  0.11549  3.50937     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     43   2.95806  3.60310  0.11549  3.50937     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     44   3.45055  0.12815  3.49927  2.84168     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
+     45   0.72443  2.22589  2.18730  1.22007     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01845  4.00193        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyonei_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:46:51 2012
+NSEQ  4
+EFFN  3.253906
+CKSUM 2638254345
+STATS LOCAL MSV       -7.9634  0.71932
+STATS LOCAL VITERBI   -7.8088  0.71932
+STATS LOCAL FORWARD   -4.1822  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.00216  1.20315  1.07261  1.50239
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  0.00000        *
+      1   3.40742  0.13331  3.45796  2.81026      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+      2   2.93193  3.56511  0.11967  3.46744      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+      3   2.93193  3.56511  0.11967  3.46744      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+      4   3.40742  0.13331  3.45796  2.81026      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+      5   3.06618  2.58087  3.11519  0.18233      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+      6   3.06618  2.58087  3.11519  0.18233      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+      7   3.06618  2.58087  3.11519  0.18233      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+      8   2.93193  3.56511  0.11967  3.46744      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+      9   2.93193  3.56511  0.11967  3.46744      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     10   2.93193  3.56511  0.11967  3.46744     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     11   3.06618  2.58087  3.11519  0.18233     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     12   3.40742  0.13331  3.45796  2.81026     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     13   0.14487  3.35799  2.78743  3.25755     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     14   3.40742  0.13331  3.45796  2.81026     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     15   3.06618  2.58087  3.11519  0.18233     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     16   3.40742  0.13331  3.45796  2.81026     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     17   3.40742  0.13331  3.45796  2.81026     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     18   3.40742  0.13331  3.45796  2.81026     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     19   2.93193  3.56511  0.11967  3.46744     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     20   0.86439  2.50382  0.91051  2.35812     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     21   0.14487  3.35799  2.78743  3.25755     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     22   2.93193  3.56511  0.11967  3.46744     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     23   3.40742  0.13331  3.45796  2.81026     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     24   3.40742  0.13331  3.45796  2.81026     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     25   0.14487  3.35799  2.78743  3.25755     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     26   3.40742  0.13331  3.45796  2.81026     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     27   2.93193  3.56511  0.11967  3.46744     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     28   3.40742  0.13331  3.45796  2.81026     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     29   3.40742  0.13331  3.45796  2.81026     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     30   3.06618  2.58087  3.11519  0.18233     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     31   2.93193  3.56511  0.11967  3.46744     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     32   3.06618  2.58087  3.11519  0.18233     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     33   3.40742  0.13331  3.45796  2.81026     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     34   3.06618  2.58087  3.11519  0.18233     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     35   2.93193  3.56511  0.11967  3.46744     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     36   0.14487  3.35799  2.78743  3.25755     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     37   2.93193  3.56511  0.11967  3.46744     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     38   2.93193  3.56511  0.11967  3.46744     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     39   2.93193  3.56511  0.11967  3.46744     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     40   3.06618  2.58087  3.11519  0.18233     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     41   3.40742  0.13331  3.45796  2.81026     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     42   2.93193  3.56511  0.11967  3.46744     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     43   2.93193  3.56511  0.11967  3.46744     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     44   3.06618  2.58087  3.11519  0.18233     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     45   2.93193  3.56511  0.11967  3.46744     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01885  3.98041        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyonej_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:46:56 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4204561327
+STATS LOCAL MSV       -7.3459  0.72810
+STATS LOCAL VITERBI   -8.2466  0.72810
+STATS LOCAL FORWARD   -3.4606  0.72810
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82402  1.11829  1.12097  1.68296
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.15554  1.00938  2.23102  0.88601      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.15554  1.00938  2.23102  0.88601     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyonek_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:47:03 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1792586209
+STATS LOCAL MSV       -7.4246  0.72709
+STATS LOCAL VITERBI   -8.3745  0.72709
+STATS LOCAL FORWARD   -3.2313  0.72709
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92710  1.15123  1.08134  1.61425
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyonel_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:47:08 2012
+NSEQ  47
+EFFN  3.278870
+CKSUM 1171561476
+STATS LOCAL MSV       -7.9855  0.71932
+STATS LOCAL VITERBI   -7.7310  0.71932
+STATS LOCAL FORWARD   -3.7739  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.09004  1.00197  1.05220  1.83263
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  0.00000        *
+      1   3.41682  0.13217  3.46697  2.81712      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+      2   2.93765  3.57340  0.11874  3.47658      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+      3   2.93765  3.57340  0.11874  3.47658      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+      4   3.41682  0.13217  3.46697  2.81712      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+      5   3.41682  0.13217  3.46697  2.81712      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+      6   3.07437  2.58608  3.12307  0.18099      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+      7   3.41682  0.13217  3.46697  2.81712      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+      8   2.93765  3.57340  0.11874  3.47658      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+      9   2.93765  3.57340  0.11874  3.47658      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     10   2.93765  3.57340  0.11874  3.47658     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     11   3.07437  2.58608  3.12307  0.18099     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     12   3.41682  0.13217  3.46697  2.81712     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     13   3.41682  0.13217  3.46697  2.81712     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     14   1.00314  2.52316  0.77589  2.37760     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     15   3.07437  2.58608  3.12307  0.18099     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     16   3.41682  0.13217  3.46697  2.81712     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     17   3.41682  0.13217  3.46697  2.81712     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     18   3.41682  0.13217  3.46697  2.81712     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     19   2.93765  3.57340  0.11874  3.47658     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     20   0.14377  3.36613  2.79274  3.26646     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     21   2.93765  3.57340  0.11874  3.47658     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     22   2.93765  3.57340  0.11874  3.47658     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     23   3.41682  0.13217  3.46697  2.81712     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     24   3.41682  0.13217  3.46697  2.81712     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     25   0.14377  3.36613  2.79274  3.26646     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     26   3.41682  0.13217  3.46697  2.81712     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     27   2.93765  3.57340  0.11874  3.47658     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     28   3.41682  0.13217  3.46697  2.81712     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     29   3.41682  0.13217  3.46697  2.81712     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     30   3.41682  0.13217  3.46697  2.81712     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     31   2.93765  3.57340  0.11874  3.47658     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     32   3.07437  2.58608  3.12307  0.18099     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     33   3.41682  0.13217  3.46697  2.81712     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     34   3.07437  2.58608  3.12307  0.18099     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     35   2.93765  3.57340  0.11874  3.47658     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     36   0.14377  3.36613  2.79274  3.26646     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     37   2.93765  3.57340  0.11874  3.47658     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     38   2.93765  3.57340  0.11874  3.47658     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     39   2.93765  3.57340  0.11874  3.47658     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     40   3.07437  2.58608  3.12307  0.18099     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     41   3.41682  0.13217  3.46697  2.81712     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     42   2.93765  3.57340  0.11874  3.47658     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     43   2.93765  3.57340  0.11874  3.47658     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     44   3.41682  0.13217  3.46697  2.81712     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
+     45   0.83989  2.50807  0.93487  2.36258     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01877  3.98506        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyonem_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:47:14 2012
+NSEQ  15
+EFFN  3.101807
+CKSUM 122630504
+STATS LOCAL MSV       -8.1264  0.71934
+STATS LOCAL VITERBI   -7.7491  0.71934
+STATS LOCAL FORWARD   -3.9428  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.04999  1.15617  1.04738  1.58125
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  0.00000        *
+      1   3.34837  0.14079  3.40133  2.76688      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+      2   2.89562  3.51276  0.12571  3.40979      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+      3   2.89562  3.51276  0.12571  3.40979      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+      4   3.34837  0.14079  3.40133  2.76688      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+      5   3.34837  0.14079  3.40133  2.76688      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+      6   3.01512  2.54827  3.06606  0.19099      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+      7   3.34837  0.14079  3.40133  2.76688      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+      8   2.89562  3.51276  0.12571  3.40979      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+      9   2.89562  3.51276  0.12571  3.40979      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     10   2.89562  3.51276  0.12571  3.40979     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     11   3.01512  2.54827  3.06606  0.19099     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     12   3.34837  0.14079  3.40133  2.76688     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     13   0.15198  3.30687  2.75398  3.20169     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     14   0.15198  3.30687  2.75398  3.20169     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     15   3.01512  2.54827  3.06606  0.19099     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     16   3.34837  0.14079  3.40133  2.76688     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     17   3.34837  0.14079  3.40133  2.76688     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     18   3.34837  0.14079  3.40133  2.76688     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     19   2.89562  3.51276  0.12571  3.40979     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     20   2.89562  3.51276  0.12571  3.40979     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     21   2.89562  3.51276  0.12571  3.40979     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     22   2.89562  3.51276  0.12571  3.40979     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     23   3.34837  0.14079  3.40133  2.76688     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     24   3.34837  0.14079  3.40133  2.76688     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     25   0.15198  3.30687  2.75398  3.20169     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     26   3.34837  0.14079  3.40133  2.76688     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     27   2.89562  3.51276  0.12571  3.40979     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     28   3.01512  2.54827  3.06606  0.19099     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     29   3.34837  0.14079  3.40133  2.76688     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     30   3.34837  0.14079  3.40133  2.76688     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     31   2.89562  3.51276  0.12571  3.40979     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     32   3.01512  2.54827  3.06606  0.19099     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     33   3.34837  0.14079  3.40133  2.76688     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     34   3.01512  2.54827  3.06606  0.19099     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     35   2.89562  3.51276  0.12571  3.40979     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     36   0.15198  3.30687  2.75398  3.20169     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     37   2.89562  3.51276  0.12571  3.40979     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     38   2.89562  3.51276  0.12571  3.40979     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     39   2.89562  3.51276  0.12571  3.40979     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     40   3.01512  2.54827  3.06606  0.19099     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     41   3.34837  0.14079  3.40133  2.76688     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     42   2.89562  3.51276  0.12571  3.40979     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     43   2.89562  3.51276  0.12571  3.40979     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     44   3.01512  2.54827  3.06606  0.19099     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
+     45   3.01512  2.54827  3.06606  0.19099     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01941  3.95159        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyonen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:47:19 2012
+NSEQ  14
+EFFN  3.496582
+CKSUM 454827207
+STATS LOCAL MSV       -7.1258  0.71933
+STATS LOCAL VITERBI   -7.6320  0.71933
+STATS LOCAL FORWARD   -4.0437  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.07348  1.02582  1.07126  1.75347
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  0.00000        *
+      1   3.49533  0.12303  3.54211  2.87408      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+      2   2.98489  3.64235  0.11136  3.55276      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+      3   2.98489  3.64235  0.11136  3.55276      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+      4   3.49533  0.12303  3.54211  2.87408      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+      5   2.78530  1.85386  2.84503  0.32362      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+      6   3.49533  0.12303  3.54211  2.87408      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+      7   2.56878  1.42220  2.63576  0.49344      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+      8   2.98489  3.64235  0.11136  3.55276      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+      9   2.98489  3.64235  0.11136  3.55276      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     10   3.49533  0.12303  3.54211  2.87408     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     11   3.14355  2.63004  3.18959  0.17007     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     12   3.49533  0.12303  3.54211  2.87408     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     13   0.13496  3.43436  2.83695  3.34119     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     14   3.49533  0.12303  3.54211  2.87408     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     15   3.14355  2.63004  3.18959  0.17007     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     16   2.98489  3.64235  0.11136  3.55276     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     17   3.49533  0.12303  3.54211  2.87408     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     18   3.49533  0.12303  3.54211  2.87408     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     19   0.46429  2.70804  1.47690  2.57173     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     20   2.98489  3.64235  0.11136  3.55276     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     21   0.27794  3.00111  1.98907  2.88058     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     22   2.98489  3.64235  0.11136  3.55276     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     23   3.49533  0.12303  3.54211  2.87408     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     24   3.49533  0.12303  3.54211  2.87408     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     25   0.87142  2.18300  2.17975  1.03319     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     26   3.49533  0.12303  3.54211  2.87408     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     27   2.98489  3.64235  0.11136  3.55276     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     28   3.49533  0.12303  3.54211  2.87408     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     29   3.49533  0.12303  3.54211  2.87408     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     30   3.14355  2.63004  3.18959  0.17007     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     31   2.98489  3.64235  0.11136  3.55276     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     32   3.14355  2.63004  3.18959  0.17007     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     33   3.49533  0.12303  3.54211  2.87408     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     34   3.49533  0.12303  3.54211  2.87408     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     35   2.98489  3.64235  0.11136  3.55276     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     36   0.13496  3.43436  2.83695  3.34119     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     37   2.98489  3.64235  0.11136  3.55276     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     38   2.98489  3.64235  0.11136  3.55276     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     39   2.98489  3.64235  0.11136  3.55276     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     40   3.14355  2.63004  3.18959  0.17007     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     41   3.49533  0.12303  3.54211  2.87408     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     42   2.98489  3.64235  0.11136  3.55276     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     43   2.98489  3.64235  0.11136  3.55276     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     44   3.49533  0.12303  3.54211  2.87408     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     45   2.98489  3.64235  0.11136  3.55276     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01803  4.02474        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyoneo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:47:23 2012
+NSEQ  24
+EFFN  3.477539
+CKSUM 2321990089
+STATS LOCAL MSV       -7.2176  0.71931
+STATS LOCAL VITERBI   -7.8215  0.71931
+STATS LOCAL FORWARD   -3.6009  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.02877  1.12529  1.08171  1.58510
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  0.00000        *
+      1   2.98094  3.63655  0.11196  3.54635      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+      2   3.48870  0.12377  3.53577  2.86929      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+      3   2.98094  3.63655  0.11196  3.54635      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+      4   2.98094  3.63655  0.11196  3.54635      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+      5   3.48870  0.12377  3.53577  2.86929      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+      6   3.48870  0.12377  3.53577  2.86929      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+      7   3.13765  2.62630  3.18392  0.17097      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+      8   3.48870  0.12377  3.53577  2.86929      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+      9   2.98094  3.63655  0.11196  3.54635      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     10   2.98094  3.63655  0.11196  3.54635     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     11   2.98094  3.63655  0.11196  3.54635     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     12   2.48121  1.20688  2.55094  0.61763     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     13   0.13568  3.42858  2.83322  3.33486     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     14   1.44121  1.61091  2.13965  0.80754     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     15   3.13765  2.62630  3.18392  0.17097     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     16   3.48870  0.12377  3.53577  2.86929     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     17   3.48870  0.12377  3.53577  2.86929     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     18   3.48870  0.12377  3.53577  2.86929     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     19   2.98094  3.63655  0.11196  3.54635     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     20   0.13568  3.42858  2.83322  3.33486     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     21   2.98094  3.63655  0.11196  3.54635     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     22   2.98094  3.63655  0.11196  3.54635     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     23   3.48870  0.12377  3.53577  2.86929     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     24   3.48870  0.12377  3.53577  2.86929     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     25   0.13568  3.42858  2.83322  3.33486     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     26   2.42167  0.25236  2.92944  2.51535     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     27   2.98094  3.63655  0.11196  3.54635     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     28   3.48870  0.12377  3.53577  2.86929     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     29   3.48870  0.12377  3.53577  2.86929     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     30   2.75701  1.80810  2.81769  0.33854     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     31   2.98094  3.63655  0.11196  3.54635     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     32   3.13765  2.62630  3.18392  0.17097     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     33   3.48870  0.12377  3.53577  2.86929     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     34   3.13765  2.62630  3.18392  0.17097     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     35   3.48870  0.12377  3.53577  2.86929     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     36   0.13568  3.42858  2.83322  3.33486     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     37   2.98094  3.63655  0.11196  3.54635     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     38   2.98094  3.63655  0.11196  3.54635     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     39   2.98094  3.63655  0.11196  3.54635     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     40   3.13765  2.62630  3.18392  0.17097     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     41   3.48870  0.12377  3.53577  2.86929     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     42   2.98094  3.63655  0.11196  3.54635     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     43   2.98094  3.63655  0.11196  3.54635     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     44   3.13765  2.62630  3.18392  0.17097     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
+     45   3.13765  2.62630  3.18392  0.17097     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01809  4.02133        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyonep_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:47:28 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 488441447
+STATS LOCAL MSV       -7.4471  0.72733
+STATS LOCAL VITERBI   -8.3499  0.72733
+STATS LOCAL FORWARD   -3.0393  0.72733
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.75073  1.10536  1.22053  1.60851
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyoneq_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:47:35 2012
+NSEQ  13
+EFFN  3.380127
+CKSUM 962922846
+STATS LOCAL MSV       -7.3474  0.71932
+STATS LOCAL VITERBI   -7.7040  0.71932
+STATS LOCAL FORWARD   -3.8646  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.04819  1.08537  1.24545  1.40469
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  0.00000        *
+      1   2.96019  3.60621  0.11516  3.51280      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+      2   3.45409  0.12773  3.50265  2.84425      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+      3   2.96019  3.60621  0.11516  3.51280      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+      4   2.96019  3.60621  0.11516  3.51280      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+      5   3.45409  0.12773  3.50265  2.84425      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+      6   0.13951  3.39848  2.81374  3.30187      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+      7   3.10704  2.60685  3.15448  0.17574      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+      8   3.45409  0.12773  3.50265  2.84425      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+      9   2.96019  3.60621  0.11516  3.51280      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     10   2.96019  3.60621  0.11516  3.51280     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     11   3.45409  0.12773  3.50265  2.84425     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     12   3.10704  2.60685  3.15448  0.17574     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     13   3.10704  2.60685  3.15448  0.17574     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     14   3.45409  0.12773  3.50265  2.84425     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     15   3.45409  0.12773  3.50265  2.84425     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     16   0.13951  3.39848  2.81374  3.30187     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     17   3.45409  0.12773  3.50265  2.84425     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     18   3.45409  0.12773  3.50265  2.84425     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     19   2.96019  3.60621  0.11516  3.51280     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     20   1.84363  2.30298  2.50331  0.41554     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     21   3.10704  2.60685  3.15448  0.17574     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     22   2.96019  3.60621  0.11516  3.51280     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     23   3.45409  0.12773  3.50265  2.84425     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     24   3.45409  0.12773  3.50265  2.84425     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     25   0.13951  3.39848  2.81374  3.30187     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     26   3.45409  0.12773  3.50265  2.84425     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     27   2.96019  3.60621  0.11516  3.51280     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     28   3.45409  0.12773  3.50265  2.84425     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     29   3.45409  0.12773  3.50265  2.84425     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     30   3.10704  2.60685  3.15448  0.17574     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     31   2.96019  3.60621  0.11516  3.51280     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     32   3.10704  2.60685  3.15448  0.17574     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     33   3.45409  0.12773  3.50265  2.84425     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     34   3.10704  2.60685  3.15448  0.17574     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     35   3.45409  0.12773  3.50265  2.84425     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     36   0.13951  3.39848  2.81374  3.30187     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     37   2.96019  3.60621  0.11516  3.51280     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     38   2.96019  3.60621  0.11516  3.51280     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     39   2.96019  3.60621  0.11516  3.51280     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     40   3.10704  2.60685  3.15448  0.17574     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     41   3.45409  0.12773  3.50265  2.84425     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     42   2.96019  3.60621  0.11516  3.51280     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     43   2.20232  2.18081  1.41085  0.63005     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     44   3.10704  2.60685  3.15448  0.17574     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
+     45   3.10704  2.60685  3.15448  0.17574     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01842  4.00371        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortyoner_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:47:41 2012
+NSEQ  6
+EFFN  3.284180
+CKSUM 1160924706
+STATS LOCAL MSV       -8.1910  0.71932
+STATS LOCAL VITERBI   -7.7546  0.71932
+STATS LOCAL FORWARD   -4.1572  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92186  1.19878  1.11086  1.50135
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  0.00000        *
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+          1.38629  1.38629  1.38629  1.38629
+          0.01875  3.98605        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortysevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:50:05 2012
+NSEQ  15
+EFFN  3.409424
+CKSUM 1562515902
+STATS LOCAL MSV       -7.2512  0.71932
+STATS LOCAL VITERBI   -7.7652  0.71932
+STATS LOCAL FORWARD   -4.0508  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.80417  1.23325  1.19344  1.42350
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02703  4.02703  1.46634  0.26236  0.00000        *
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+     42   2.96653  3.61546  0.11417  3.52302     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
+     43   3.11633  2.61276  3.16342  0.17427     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
+     44   2.96653  3.61546  0.11417  3.52302     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
+     45   3.11633  2.61276  3.16342  0.17427     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01832  4.00905        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortysevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:50:12 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3961930010
+STATS LOCAL MSV       -8.0281  0.72000
+STATS LOCAL VITERBI   -7.7576  0.72000
+STATS LOCAL FORWARD   -3.9753  0.72000
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92209  1.20667  1.15009  1.43590
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.86982  3.47591  0.13017  3.36931     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:49:57 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1910693752
+STATS LOCAL MSV       -8.1780  0.72010
+STATS LOCAL VITERBI   -7.9339  0.72010
+STATS LOCAL FORWARD   -3.7083  0.72010
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.04431  1.14945  1.20707  1.36788
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   3.30705  0.14631  3.36166  2.73626     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortythreea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:48:03 2012
+NSEQ  91
+EFFN  3.340851
+CKSUM 1476701771
+STATS LOCAL MSV       -8.0383  0.71932
+STATS LOCAL VITERBI   -7.8104  0.71932
+STATS LOCAL FORWARD   -3.8961  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93857  1.37910  1.13933  1.25790
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  0.00000        *
+      1   2.95157  3.59364  0.11652  3.49892      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+      2   3.43979  0.12941  3.48897  2.83386      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+      3   2.95157  3.59364  0.11652  3.49892      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+      4   3.43979  0.12941  3.48897  2.83386      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+      5   3.09447  2.59887  3.14240  0.17774      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+      6   3.43979  0.12941  3.48897  2.83386      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+      7   3.09447  2.59887  3.14240  0.17774      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+      8   3.09447  2.59887  3.14240  0.17774      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+      9   2.95157  3.59364  0.11652  3.49892      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     10   2.95157  3.59364  0.11652  3.49892     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     11   2.95157  3.59364  0.11652  3.49892     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     12   3.09447  2.59887  3.14240  0.17774     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     13   3.09447  2.59887  3.14240  0.17774     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     14   3.43979  0.12941  3.48897  2.83386     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     15   3.09447  2.59887  3.14240  0.17774     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     16   3.43979  0.12941  3.48897  2.83386     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     17   3.43979  0.12941  3.48897  2.83386     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     18   3.43979  0.12941  3.48897  2.83386     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     19   0.14113  3.38606  2.80569  3.28828     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     20   2.95157  3.59364  0.11652  3.49892     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     21   2.95157  3.59364  0.11652  3.49892     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     22   0.14113  3.38606  2.80569  3.28828     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     23   2.95157  3.59364  0.11652  3.49892     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     24   3.43979  0.12941  3.48897  2.83386     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     25   0.14113  3.38606  2.80569  3.28828     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     26   3.09447  2.59887  3.14240  0.17774     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     27   2.95157  3.59364  0.11652  3.49892     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     28   3.09447  2.59887  3.14240  0.17774     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     29   3.43979  0.12941  3.48897  2.83386     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     30   3.09447  2.59887  3.14240  0.17774     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     31   2.95157  3.59364  0.11652  3.49892     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     32   3.09447  2.59887  3.14240  0.17774     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     33   3.43979  0.12941  3.48897  2.83386     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     34   3.09447  2.59887  3.14240  0.17774     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     35   2.95157  3.59364  0.11652  3.49892     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     36   0.14113  3.38606  2.80569  3.28828     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     37   2.95157  3.59364  0.11652  3.49892     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     38   3.09447  2.59887  3.14240  0.17774     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     39   2.95157  3.59364  0.11652  3.49892     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     40   3.09447  2.59887  3.14240  0.17774     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     41   3.43979  0.12941  3.48897  2.83386     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     42   2.95157  3.59364  0.11652  3.49892     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     43   2.95157  3.59364  0.11652  3.49892     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     44   0.25356  2.90313  2.57702  2.37388     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
+     45   2.05766  2.35964  2.61577  0.35001     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01855  3.99652        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortythreeb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:48:12 2012
+NSEQ  10
+EFFN  3.344727
+CKSUM 3904922218
+STATS LOCAL MSV       -8.0935  0.71933
+STATS LOCAL VITERBI   -7.7454  0.71933
+STATS LOCAL FORWARD   -3.8675  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.05450  1.18855  1.08806  1.46832
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  0.00000        *
+      1   2.95243  3.59489  0.11638  3.50030      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+      2   3.44121  0.12925  3.49033  2.83489      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+      3   2.95243  3.59489  0.11638  3.50030      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+      4   3.44121  0.12925  3.49033  2.83489      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+      5   3.09571  2.59966  3.14360  0.17754      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+      6   3.44121  0.12925  3.49033  2.83489      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+      7   3.09571  2.59966  3.14360  0.17754      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+      8   3.44121  0.12925  3.49033  2.83489      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+      9   2.95243  3.59489  0.11638  3.50030      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     10   2.95243  3.59489  0.11638  3.50030     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     11   2.95243  3.59489  0.11638  3.50030     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     12   3.09571  2.59966  3.14360  0.17754     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     13   3.09571  2.59966  3.14360  0.17754     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     14   3.44121  0.12925  3.49033  2.83489     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     15   3.09571  2.59966  3.14360  0.17754     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     16   3.44121  0.12925  3.49033  2.83489     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     17   3.44121  0.12925  3.49033  2.83489     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     18   3.44121  0.12925  3.49033  2.83489     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     19   2.95243  3.59489  0.11638  3.50030     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     20   2.95243  3.59489  0.11638  3.50030     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     21   2.95243  3.59489  0.11638  3.50030     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     22   0.14097  3.38730  2.80649  3.28963     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     23   2.95243  3.59489  0.11638  3.50030     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     24   3.44121  0.12925  3.49033  2.83489     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     25   0.14097  3.38730  2.80649  3.28963     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     26   2.54110  0.54447  2.61246  1.31782     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     27   2.95243  3.59489  0.11638  3.50030     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     28   3.09571  2.59966  3.14360  0.17754     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     29   3.44121  0.12925  3.49033  2.83489     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     30   2.54110  0.54447  2.61246  1.31782     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     31   2.95243  3.59489  0.11638  3.50030     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     32   3.09571  2.59966  3.14360  0.17754     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     33   3.44121  0.12925  3.49033  2.83489     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     34   3.09571  2.59966  3.14360  0.17754     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     35   2.95243  3.59489  0.11638  3.50030     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     36   0.14097  3.38730  2.80649  3.28963     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     37   2.95243  3.59489  0.11638  3.50030     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     38   3.09571  2.59966  3.14360  0.17754     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     39   2.95243  3.59489  0.11638  3.50030     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     40   3.09571  2.59966  3.14360  0.17754     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     41   3.44121  0.12925  3.49033  2.83489     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     42   2.95243  3.59489  0.11638  3.50030     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     43   2.95243  3.59489  0.11638  3.50030     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     44   3.44121  0.12925  3.49033  2.83489     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
+     45   0.14097  3.38730  2.80649  3.28963     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01854  3.99723        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortythreec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:48:18 2012
+NSEQ  41
+EFFN  3.410828
+CKSUM 1774296887
+STATS LOCAL MSV       -7.2090  0.71932
+STATS LOCAL VITERBI   -7.7796  0.71932
+STATS LOCAL FORWARD   -3.8751  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.06490  1.38686  1.13813  1.19438
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  0.00000        *
+      1   2.96683  3.61590  0.11413  3.52351      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+      2   3.46513  0.12645  3.51322  2.85225      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+      3   2.96683  3.61590  0.11413  3.52351      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+      4   3.46513  0.12645  3.51322  2.85225      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+      5   3.11677  2.61304  3.16384  0.17420      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+      6   3.46513  0.12645  3.51322  2.85225      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+      7   3.11677  2.61304  3.16384  0.17420      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+      8   3.11677  2.61304  3.16384  0.17420      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+      9   2.96683  3.61590  0.11413  3.52351      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     10   2.96683  3.61590  0.11413  3.52351     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     11   2.96683  3.61590  0.11413  3.52351     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     12   3.11677  2.61304  3.16384  0.17420     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     13   3.11677  2.61304  3.16384  0.17420     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     14   2.77098  0.36080  2.83838  1.70505     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     15   3.11677  2.61304  3.16384  0.17420     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     16   3.46513  0.12645  3.51322  2.85225     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     17   3.46513  0.12645  3.51322  2.85225     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     18   3.46513  0.12645  3.51322  2.85225     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     19   0.13828  3.40807  2.81996  3.31238     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     20   2.96683  3.61590  0.11413  3.52351     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     21   2.96683  3.61590  0.11413  3.52351     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     22   0.13828  3.40807  2.81996  3.31238     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     23   2.96683  3.61590  0.11413  3.52351     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     24   3.46513  0.12645  3.51322  2.85225     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     25   0.18283  3.24670  2.46518  3.14204     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     26   2.86839  2.05741  2.92483  0.27214     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     27   2.96683  3.61590  0.11413  3.52351     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     28   3.11677  2.61304  3.16384  0.17420     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     29   3.46513  0.12645  3.51322  2.85225     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     30   3.11677  2.61304  3.16384  0.17420     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     31   2.96683  3.61590  0.11413  3.52351     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     32   3.11677  2.61304  3.16384  0.17420     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     33   3.46513  0.12645  3.51322  2.85225     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     34   3.11677  2.61304  3.16384  0.17420     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     35   2.96683  3.61590  0.11413  3.52351     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     36   0.13828  3.40807  2.81996  3.31238     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     37   2.96683  3.61590  0.11413  3.52351     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     38   3.11677  2.61304  3.16384  0.17420     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     39   2.96683  3.61590  0.11413  3.52351     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     40   3.11677  2.61304  3.16384  0.17420     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     41   3.46513  0.12645  3.51322  2.85225     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     42   2.96683  3.61590  0.11413  3.52351     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     43   2.96683  3.61590  0.11413  3.52351     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     44   3.11677  2.61304  3.16384  0.17420     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
+     45   2.97628  2.28208  3.02857  0.22494     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01831  4.00930        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortythreed_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:48:26 2012
+NSEQ  4
+EFFN  3.417969
+CKSUM 173122380
+STATS LOCAL MSV       -7.2851  0.71933
+STATS LOCAL VITERBI   -7.8107  0.71933
+STATS LOCAL FORWARD   -4.0662  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.06256  1.34658  1.25579  1.11508
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  0.00000        *
+      1   2.96836  3.61813  0.11389  3.52598      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+      2   3.46768  0.12616  3.51566  2.85409      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+      3   2.96836  3.61813  0.11389  3.52598      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+      4   3.46768  0.12616  3.51566  2.85409      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+      5   3.11902  2.61447  3.16601  0.17385      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+      6   3.46768  0.12616  3.51566  2.85409      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+      7   3.11902  2.61447  3.16601  0.17385      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+      8   3.11902  2.61447  3.16601  0.17385      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+      9   2.96836  3.61813  0.11389  3.52598      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     10   2.96836  3.61813  0.11389  3.52598     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     11   2.96836  3.61813  0.11389  3.52598     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     12   3.11902  2.61447  3.16601  0.17385     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     13   3.11902  2.61447  3.16601  0.17385     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     14   3.46768  0.12616  3.51566  2.85409     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     15   2.42235  0.95448  2.49423  0.81257     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     16   3.46768  0.12616  3.51566  2.85409     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     17   3.46768  0.12616  3.51566  2.85409     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     18   3.46768  0.12616  3.51566  2.85409     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     19   0.13799  3.41029  2.82139  3.31481     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     20   2.96836  3.61813  0.11389  3.52598     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     21   2.96836  3.61813  0.11389  3.52598     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     22   0.13799  3.41029  2.82139  3.31481     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     23   2.96836  3.61813  0.11389  3.52598     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     24   3.46768  0.12616  3.51566  2.85409     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     25   0.13799  3.41029  2.82139  3.31481     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     26   3.11902  2.61447  3.16601  0.17385     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     27   2.96836  3.61813  0.11389  3.52598     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     28   3.11902  2.61447  3.16601  0.17385     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     29   3.46768  0.12616  3.51566  2.85409     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     30   3.11902  2.61447  3.16601  0.17385     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     31   2.96836  3.61813  0.11389  3.52598     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     32   3.11902  2.61447  3.16601  0.17385     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     33   3.46768  0.12616  3.51566  2.85409     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     34   3.11902  2.61447  3.16601  0.17385     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     35   2.96836  3.61813  0.11389  3.52598     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     36   0.13799  3.41029  2.82139  3.31481     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     37   2.96836  3.61813  0.11389  3.52598     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     38   3.11902  2.61447  3.16601  0.17385     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     39   2.96836  3.61813  0.11389  3.52598     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     40   3.11902  2.61447  3.16601  0.17385     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     41   3.46768  0.12616  3.51566  2.85409     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     42   3.11902  2.61447  3.16601  0.17385     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     43   3.11902  2.61447  3.16601  0.17385     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     44   3.11902  2.61447  3.16601  0.17385     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
+     45   3.11902  2.61447  3.16601  0.17385     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01829  4.01059        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortythreee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:48:31 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1591869727
+STATS LOCAL MSV       -8.1938  0.72015
+STATS LOCAL VITERBI   -7.9749  0.72015
+STATS LOCAL FORWARD   -3.8874  0.72015
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.91534  1.38722  1.09397  1.31656
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortythreef_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:48:36 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 739477632
+STATS LOCAL MSV       -8.2192  0.72023
+STATS LOCAL VITERBI   -7.9047  0.72023
+STATS LOCAL FORWARD   -3.7271  0.72023
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.10282  1.10194  1.09601  1.55372
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.70020  2.19823  2.14894  1.28770     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortythreeg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:48:42 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1519089656
+STATS LOCAL MSV       -7.5630  0.72790
+STATS LOCAL VITERBI   -8.4077  0.72790
+STATS LOCAL FORWARD   -3.2043  0.72790
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82883  1.28308  1.21809  1.32268
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortythreeh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:48:47 2012
+NSEQ  8
+EFFN  3.269531
+CKSUM 3808685909
+STATS LOCAL MSV       -8.1027  0.71933
+STATS LOCAL VITERBI   -7.8398  0.71933
+STATS LOCAL FORWARD   -3.7438  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93688  1.31183  1.25872  1.19567
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  0.00000        *
+      1   2.93551  3.57031  0.11909  3.47317      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      2   3.41331  0.13259  3.46361  2.81457      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      3   2.93551  3.57031  0.11909  3.47317      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      4   3.41331  0.13259  3.46361  2.81457      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      5   3.07131  2.58413  3.12013  0.18149      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      6   3.41331  0.13259  3.46361  2.81457      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      7   3.41331  0.13259  3.46361  2.81457      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      8   3.07131  2.58413  3.12013  0.18149      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      9   2.93551  3.57031  0.11909  3.47317      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     10   2.93551  3.57031  0.11909  3.47317     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     11   2.93551  3.57031  0.11909  3.47317     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     12   3.07131  2.58413  3.12013  0.18149     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     13   0.14418  3.36310  2.79076  3.26314     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     14   3.07131  2.58413  3.12013  0.18149     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     15   3.07131  2.58413  3.12013  0.18149     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     16   3.41331  0.13259  3.46361  2.81457     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     17   3.41331  0.13259  3.46361  2.81457     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     18   3.41331  0.13259  3.46361  2.81457     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     19   0.14418  3.36310  2.79076  3.26314     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     20   2.93551  3.57031  0.11909  3.47317     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     21   2.93551  3.57031  0.11909  3.47317     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     22   0.14418  3.36310  2.79076  3.26314     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     23   2.93551  3.57031  0.11909  3.47317     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     24   3.41331  0.13259  3.46361  2.81457     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     25   0.14418  3.36310  2.79076  3.26314     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     26   3.07131  2.58413  3.12013  0.18149     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     27   2.93551  3.57031  0.11909  3.47317     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     28   3.07131  2.58413  3.12013  0.18149     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     29   3.41331  0.13259  3.46361  2.81457     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     30   3.07131  2.58413  3.12013  0.18149     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     31   2.93551  3.57031  0.11909  3.47317     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     32   3.07131  2.58413  3.12013  0.18149     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     33   3.41331  0.13259  3.46361  2.81457     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     34   3.07131  2.58413  3.12013  0.18149     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     35   3.41331  0.13259  3.46361  2.81457     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     36   0.14418  3.36310  2.79076  3.26314     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     37   2.93551  3.57031  0.11909  3.47317     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     38   3.07131  2.58413  3.12013  0.18149     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     39   2.93551  3.57031  0.11909  3.47317     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     40   3.07131  2.58413  3.12013  0.18149     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     41   3.41331  0.13259  3.46361  2.81457     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     42   2.93551  3.57031  0.11909  3.47317     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     43   3.07131  2.58413  3.12013  0.18149     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     44   3.07131  2.58413  3.12013  0.18149     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     45   3.07131  2.58413  3.12013  0.18149     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01880  3.98333        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortythreei_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:48:54 2012
+NSEQ  5
+EFFN  3.481445
+CKSUM 3758960601
+STATS LOCAL MSV       -7.3778  0.71931
+STATS LOCAL VITERBI   -7.9054  0.71931
+STATS LOCAL FORWARD   -4.2141  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93383  1.31332  1.19239  1.26236
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  0.00000        *
+      1   2.98175  3.63775  0.11183  3.54766      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+      2   3.49007  0.12362  3.53707  2.87028      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+      3   2.98175  3.63775  0.11183  3.54766      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+      4   3.49007  0.12362  3.53707  2.87028      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+      5   3.13887  2.62707  3.18509  0.17078      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+      6   3.49007  0.12362  3.53707  2.87028      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+      7   2.46252  0.72637  2.53467  1.04461      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+      8   3.49007  0.12362  3.53707  2.87028      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+      9   3.13887  2.62707  3.18509  0.17078      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     10   2.98175  3.63775  0.11183  3.54766     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     11   2.98175  3.63775  0.11183  3.54766     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     12   3.13887  2.62707  3.18509  0.17078     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     13   3.13887  2.62707  3.18509  0.17078     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     14   3.49007  0.12362  3.53707  2.87028     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     15   3.13887  2.62707  3.18509  0.17078     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     16   3.49007  0.12362  3.53707  2.87028     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     17   3.49007  0.12362  3.53707  2.87028     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     18   0.13553  3.42977  2.83398  3.33617     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     19   2.98175  3.63775  0.11183  3.54766     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     20   2.98175  3.63775  0.11183  3.54766     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     21   2.98175  3.63775  0.11183  3.54766     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     22   0.13553  3.42977  2.83398  3.33617     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     23   2.98175  3.63775  0.11183  3.54766     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     24   3.49007  0.12362  3.53707  2.87028     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     25   0.13553  3.42977  2.83398  3.33617     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     26   3.13887  2.62707  3.18509  0.17078     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     27   2.98175  3.63775  0.11183  3.54766     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     28   3.13887  2.62707  3.18509  0.17078     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     29   2.46252  0.72637  2.53467  1.04461     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     30   3.13887  2.62707  3.18509  0.17078     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     31   2.98175  3.63775  0.11183  3.54766     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     32   3.13887  2.62707  3.18509  0.17078     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     33   3.49007  0.12362  3.53707  2.87028     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     34   3.13887  2.62707  3.18509  0.17078     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     35   2.98175  3.63775  0.11183  3.54766     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     36   0.13553  3.42977  2.83398  3.33617     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     37   2.98175  3.63775  0.11183  3.54766     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     38   3.49007  0.12362  3.53707  2.87028     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     39   2.98175  3.63775  0.11183  3.54766     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     40   3.13887  2.62707  3.18509  0.17078     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     41   3.49007  0.12362  3.53707  2.87028     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     42   0.13553  3.42977  2.83398  3.33617     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     43   3.13887  2.62707  3.18509  0.17078     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     44   2.98175  3.63775  0.11183  3.54766     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
+     45   3.13887  2.62707  3.18509  0.17078     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01808  4.02203        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortythreej_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:48:59 2012
+NSEQ  4
+EFFN  3.175781
+CKSUM 3177132795
+STATS LOCAL MSV       -8.0711  0.71931
+STATS LOCAL VITERBI   -7.8271  0.71931
+STATS LOCAL FORWARD   -4.1706  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82240  1.26363  1.14453  1.43816
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  0.00000        *
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     44   2.91360  3.53861  0.12268  3.43825     44 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   0.14843  3.33206  2.77050  3.22920     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01914  3.96571        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortythreek_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:49:03 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1955569616
+STATS LOCAL MSV       -7.4824  0.72803
+STATS LOCAL VITERBI   -8.2186  0.72803
+STATS LOCAL FORWARD   -3.5060  0.72803
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74000  1.39139  1.21494  1.27646
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
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+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortythreel_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:49:11 2012
+NSEQ  4
+EFFN  3.222656
+CKSUM 386890201
+STATS LOCAL MSV       -8.1714  0.71933
+STATS LOCAL VITERBI   -7.7255  0.71933
+STATS LOCAL FORWARD   -4.3341  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82367  1.31887  1.19880  1.31091
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  0.00000        *
+      1   2.92468  3.55461  0.12085  3.45586      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      2   3.39555  0.13478  3.44658  2.80157      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      3   2.92468  3.55461  0.12085  3.45586      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      4   3.39555  0.13478  3.44658  2.80157      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      5   3.05586  2.57429  3.10526  0.18405      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      6   3.39555  0.13478  3.44658  2.80157      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      7   3.39555  0.13478  3.44658  2.80157      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      8   3.05586  2.57429  3.10526  0.18405      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      9   3.05586  2.57429  3.10526  0.18405      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     10   2.92468  3.55461  0.12085  3.45586     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     11   2.92468  3.55461  0.12085  3.45586     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     12   3.39555  0.13478  3.44658  2.80157     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     13   3.05586  2.57429  3.10526  0.18405     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     14   3.39555  0.13478  3.44658  2.80157     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     15   3.05586  2.57429  3.10526  0.18405     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     16   3.39555  0.13478  3.44658  2.80157     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     17   3.39555  0.13478  3.44658  2.80157     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     18   0.14627  3.34770  2.78072  3.24630     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     19   0.14627  3.34770  2.78072  3.24630     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     20   2.92468  3.55461  0.12085  3.45586     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     21   2.92468  3.55461  0.12085  3.45586     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     22   0.14627  3.34770  2.78072  3.24630     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     23   2.92468  3.55461  0.12085  3.45586     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     24   3.39555  0.13478  3.44658  2.80157     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     25   0.14627  3.34770  2.78072  3.24630     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     26   3.05586  2.57429  3.10526  0.18405     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     27   2.92468  3.55461  0.12085  3.45586     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     28   3.05586  2.57429  3.10526  0.18405     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     29   3.39555  0.13478  3.44658  2.80157     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     30   3.05586  2.57429  3.10526  0.18405     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     31   2.92468  3.55461  0.12085  3.45586     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     32   3.05586  2.57429  3.10526  0.18405     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     33   3.39555  0.13478  3.44658  2.80157     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     34   3.05586  2.57429  3.10526  0.18405     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     35   2.92468  3.55461  0.12085  3.45586     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     36   0.14627  3.34770  2.78072  3.24630     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     37   2.92468  3.55461  0.12085  3.45586     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     38   2.92468  3.55461  0.12085  3.45586     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     39   2.92468  3.55461  0.12085  3.45586     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     40   3.05586  2.57429  3.10526  0.18405     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     41   3.39555  0.13478  3.44658  2.80157     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     42   2.92468  3.55461  0.12085  3.45586     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     43   0.14627  3.34770  2.78072  3.24630     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     44   3.05586  2.57429  3.10526  0.18405     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     45   3.05586  2.57429  3.10526  0.18405     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01897  3.97456        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortythreem_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:49:16 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 603423961
+STATS LOCAL MSV       -7.9589  0.72027
+STATS LOCAL VITERBI   -7.8724  0.72027
+STATS LOCAL FORWARD   -3.7891  0.72027
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.91615  1.38333  1.14591  1.25825
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fortytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:47:52 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1347837329
+STATS LOCAL MSV       -7.4541  0.72721
+STATS LOCAL VITERBI   -8.2939  0.72721
+STATS LOCAL FORWARD   -3.3636  0.72721
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92452  1.19705  1.08122  1.54745
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_foura_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:32:20 2012
+NSEQ  4
+EFFN  3.214844
+CKSUM 836289414
+STATS LOCAL MSV       -7.9825  0.71932
+STATS LOCAL VITERBI   -7.8216  0.71932
+STATS LOCAL FORWARD   -4.1059  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63264  1.38880  1.19625  1.37482
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  0.00000        *
+      1   2.92285  3.55196  0.12115  3.45295      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      2   3.39256  0.13515  3.44371  2.79938      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      3   3.39256  0.13515  3.44371  2.79938      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      4   0.14663  3.34511  2.77903  3.24347      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      5   3.05326  2.57263  3.10276  0.18448      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      6   3.05326  2.57263  3.10276  0.18448      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      7   2.92285  3.55196  0.12115  3.45295      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      8   2.92285  3.55196  0.12115  3.45295      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      9   0.14663  3.34511  2.77903  3.24347      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     10   2.92285  3.55196  0.12115  3.45295     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     11   3.05326  2.57263  3.10276  0.18448     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     12   2.92285  3.55196  0.12115  3.45295     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     13   0.14663  3.34511  2.77903  3.24347     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     14   3.39256  0.13515  3.44371  2.79938     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     15   0.14663  3.34511  2.77903  3.24347     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     16   3.05326  2.57263  3.10276  0.18448     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     17   3.39256  0.13515  3.44371  2.79938     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     18   3.39256  0.13515  3.44371  2.79938     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     19   3.05326  2.57263  3.10276  0.18448     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     20   3.05326  2.57263  3.10276  0.18448     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     21   3.05326  2.57263  3.10276  0.18448     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     22   2.92285  3.55196  0.12115  3.45295     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     23   2.92285  3.55196  0.12115  3.45295     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     24   3.39256  0.13515  3.44371  2.79938     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     25   0.14663  3.34511  2.77903  3.24347     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     26   3.39256  0.13515  3.44371  2.79938     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     27   2.92285  3.55196  0.12115  3.45295     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     28   3.39256  0.13515  3.44371  2.79938     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     29   3.39256  0.13515  3.44371  2.79938     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     30   3.05326  2.57263  3.10276  0.18448     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     31   2.92285  3.55196  0.12115  3.45295     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     32   2.92285  3.55196  0.12115  3.45295     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     33   3.05326  2.57263  3.10276  0.18448     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     34   3.05326  2.57263  3.10276  0.18448     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     35   3.39256  0.13515  3.44371  2.79938     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     36   0.14663  3.34511  2.77903  3.24347     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     37   2.92285  3.55196  0.12115  3.45295     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     38   2.92285  3.55196  0.12115  3.45295     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     39   2.92285  3.55196  0.12115  3.45295     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     40   3.05326  2.57263  3.10276  0.18448     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     41   3.39256  0.13515  3.44371  2.79938     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     42   2.92285  3.55196  0.12115  3.45295     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     43   3.05326  2.57263  3.10276  0.18448     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     44   0.14663  3.34511  2.77903  3.24347     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     45   0.14663  3.34511  2.77903  3.24347     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01899  3.97309        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fourb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:32:26 2012
+NSEQ  7
+EFFN  3.599121
+CKSUM 4220224434
+STATS LOCAL MSV       -7.4100  0.71932
+STATS LOCAL VITERBI   -7.8550  0.71932
+STATS LOCAL FORWARD   -4.0872  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.57621  1.40156  1.22724  1.37070
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  0.00000        *
+      1   3.00563  3.67283  0.10826  3.58650      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+      2   3.53025  0.11920  3.57549  2.89920      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+      3   3.53025  0.11920  3.57549  2.89920      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+      4   0.13122  3.46482  2.85658  3.37461      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+      5   3.17479  2.64985  3.21962  0.16539      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+      6   3.17479  2.64985  3.21962  0.16539      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+      7   3.00563  3.67283  0.10826  3.58650      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+      8   3.00563  3.67283  0.10826  3.58650      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+      9   0.13122  3.46482  2.85658  3.37461      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     10   3.00563  3.67283  0.10826  3.58650     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     11   3.17479  2.64985  3.21962  0.16539     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     12   2.15344  2.17550  1.15822  0.78456     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     13   0.13122  3.46482  2.85658  3.37461     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     14   2.63062  0.48844  2.70064  1.39746     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     15   0.13122  3.46482  2.85658  3.37461     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     16   3.17479  2.64985  3.21962  0.16539     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     17   3.53025  0.11920  3.57549  2.89920     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     18   3.53025  0.11920  3.57549  2.89920     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     19   0.13122  3.46482  2.85658  3.37461     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     20   3.17479  2.64985  3.21962  0.16539     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     21   3.17479  2.64985  3.21962  0.16539     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     22   3.00563  3.67283  0.10826  3.58650     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     23   3.00563  3.67283  0.10826  3.58650     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     24   3.53025  0.11920  3.57549  2.89920     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     25   0.13122  3.46482  2.85658  3.37461     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     26   3.53025  0.11920  3.57549  2.89920     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     27   3.00563  3.67283  0.10826  3.58650     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     28   3.53025  0.11920  3.57549  2.89920     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     29   3.53025  0.11920  3.57549  2.89920     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     30   3.17479  2.64985  3.21962  0.16539     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     31   3.00563  3.67283  0.10826  3.58650     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     32   3.00563  3.67283  0.10826  3.58650     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     33   3.17479  2.64985  3.21962  0.16539     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     34   3.17479  2.64985  3.21962  0.16539     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     35   3.53025  0.11920  3.57549  2.89920     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     36   0.13122  3.46482  2.85658  3.37461     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     37   3.00563  3.67283  0.10826  3.58650     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     38   3.00563  3.67283  0.10826  3.58650     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     39   3.00563  3.67283  0.10826  3.58650     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     40   3.17479  2.64985  3.21962  0.16539     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     41   3.53025  0.11920  3.57549  2.89920     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     42   3.00563  3.67283  0.10826  3.58650     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     43   3.17479  2.64985  3.21962  0.16539     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     44   0.57751  2.35639  2.27395  1.42279     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
+     45   0.13122  3.46482  2.85658  3.37461     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01770  4.04290        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fourc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:32:33 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 40021466
+STATS LOCAL MSV       -7.4793  0.72812
+STATS LOCAL VITERBI   -8.4338  0.72812
+STATS LOCAL FORWARD   -3.4958  0.72812
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66120  1.39035  1.26616  1.27587
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_foure_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:32:42 2012
+NSEQ  11
+EFFN  3.316650
+CKSUM 2161723841
+STATS LOCAL MSV       -8.0237  0.71932
+STATS LOCAL VITERBI   -7.7980  0.71932
+STATS LOCAL FORWARD   -4.4690  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62968  1.39846  1.25461  1.30253
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  0.00000        *
+      1   0.14215  3.37833  2.80067  3.27981      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      2   3.43088  0.13047  3.48043  2.82738      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      3   3.43088  0.13047  3.48043  2.82738      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      4   0.14215  3.37833  2.80067  3.27981      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      5   3.08666  2.59390  3.13489  0.17899      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      6   2.94618  3.58579  0.11737  3.49026      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      7   2.94618  3.58579  0.11737  3.49026      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      8   2.94618  3.58579  0.11737  3.49026      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      9   0.14215  3.37833  2.80067  3.27981      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     10   2.94618  3.58579  0.11737  3.49026     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     11   3.08666  2.59390  3.13489  0.17899     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     12   3.43088  0.13047  3.48043  2.82738     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     13   3.08666  2.59390  3.13489  0.17899     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     14   3.08666  2.59390  3.13489  0.17899     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     15   0.14215  3.37833  2.80067  3.27981     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     16   3.08666  2.59390  3.13489  0.17899     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     17   3.43088  0.13047  3.48043  2.82738     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     18   3.43088  0.13047  3.48043  2.82738     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     19   3.43088  0.13047  3.48043  2.82738     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     20   3.08666  2.59390  3.13489  0.17899     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     21   3.08666  2.59390  3.13489  0.17899     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     22   2.94618  3.58579  0.11737  3.49026     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     23   2.94618  3.58579  0.11737  3.49026     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     24   3.08666  2.59390  3.13489  0.17899     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     25   0.14215  3.37833  2.80067  3.27981     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     26   2.79049  0.34167  2.85747  1.76836     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     27   2.94618  3.58579  0.11737  3.49026     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     28   3.43088  0.13047  3.48043  2.82738     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     29   3.43088  0.13047  3.48043  2.82738     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     30   3.08666  2.59390  3.13489  0.17899     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     31   2.94618  3.58579  0.11737  3.49026     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     32   2.94618  3.58579  0.11737  3.49026     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     33   3.08666  2.59390  3.13489  0.17899     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     34   3.08666  2.59390  3.13489  0.17899     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     35   3.43088  0.13047  3.48043  2.82738     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     36   0.14215  3.37833  2.80067  3.27981     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     37   2.94618  3.58579  0.11737  3.49026     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     38   2.94618  3.58579  0.11737  3.49026     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     39   2.94618  3.58579  0.11737  3.49026     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     40   3.08666  2.59390  3.13489  0.17899     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     41   3.43088  0.13047  3.48043  2.82738     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     42   2.94618  3.58579  0.11737  3.49026     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     43   3.08666  2.59390  3.13489  0.17899     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     44   0.14215  3.37833  2.80067  3.27981     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     45   0.14215  3.37833  2.80067  3.27981     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01863  3.99206        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fourf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:32:48 2012
+NSEQ  4
+EFFN  3.128906
+CKSUM 1932922209
+STATS LOCAL MSV       -8.1150  0.71933
+STATS LOCAL VITERBI   -7.8447  0.71933
+STATS LOCAL FORWARD   -3.8141  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47448  1.33557  1.14043  1.66912
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  0.00000        *
+      1   2.90228  3.52232  0.12458  3.42031      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      2   3.35912  0.13939  3.41165  2.77481      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      3   3.35912  0.13939  3.41165  2.77481      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      4   0.15066  3.31617  2.76009  3.21184      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      5   3.35912  0.13939  3.41165  2.77481      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      6   3.35912  0.13939  3.41165  2.77481      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      7   2.90228  3.52232  0.12458  3.42031      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      8   2.90228  3.52232  0.12458  3.42031      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      9   0.15066  3.31617  2.76009  3.21184      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     10   2.90228  3.52232  0.12458  3.42031     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     11   3.02437  2.55419  3.07496  0.18939     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     12   0.15066  3.31617  2.76009  3.21184     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     13   0.15066  3.31617  2.76009  3.21184     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     14   3.35912  0.13939  3.41165  2.77481     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     15   0.15066  3.31617  2.76009  3.21184     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     16   3.02437  2.55419  3.07496  0.18939     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     17   3.35912  0.13939  3.41165  2.77481     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     18   0.15066  3.31617  2.76009  3.21184     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     19   2.90228  3.52232  0.12458  3.42031     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     20   2.90228  3.52232  0.12458  3.42031     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     21   3.02437  2.55419  3.07496  0.18939     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     22   2.90228  3.52232  0.12458  3.42031     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     23   2.90228  3.52232  0.12458  3.42031     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     24   3.35912  0.13939  3.41165  2.77481     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     25   0.15066  3.31617  2.76009  3.21184     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     26   3.35912  0.13939  3.41165  2.77481     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     27   2.90228  3.52232  0.12458  3.42031     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     28   3.02437  2.55419  3.07496  0.18939     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     29   3.35912  0.13939  3.41165  2.77481     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     30   3.02437  2.55419  3.07496  0.18939     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     31   2.90228  3.52232  0.12458  3.42031     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     32   2.90228  3.52232  0.12458  3.42031     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     33   3.02437  2.55419  3.07496  0.18939     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     34   3.02437  2.55419  3.07496  0.18939     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     35   3.35912  0.13939  3.41165  2.77481     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     36   0.15066  3.31617  2.76009  3.21184     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     37   2.90228  3.52232  0.12458  3.42031     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     38   2.90228  3.52232  0.12458  3.42031     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     39   2.90228  3.52232  0.12458  3.42031     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     40   3.02437  2.55419  3.07496  0.18939     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     41   3.35912  0.13939  3.41165  2.77481     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     42   2.90228  3.52232  0.12458  3.42031     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     43   0.15066  3.31617  2.76009  3.21184     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     44   3.35912  0.13939  3.41165  2.77481     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     45   0.15066  3.31617  2.76009  3.21184     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01931  3.95679        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fourg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:32:53 2012
+NSEQ  5
+EFFN  3.393555
+CKSUM 2530162273
+STATS LOCAL MSV       -7.5822  0.71932
+STATS LOCAL VITERBI   -7.7538  0.71932
+STATS LOCAL FORWARD   -4.3816  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.59593  1.37767  1.31214  1.28782
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  0.00000        *
+      1   2.96311  3.61046  0.11471  3.51750      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      2   3.45893  0.12717  3.50729  2.84776      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      3   3.45893  0.12717  3.50729  2.84776      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      4   0.13897  3.40269  2.81647  3.30648      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      5   3.11130  2.60957  3.15859  0.17506      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      6   3.11130  2.60957  3.15859  0.17506      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      7   2.96311  3.61046  0.11471  3.51750      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      8   2.96311  3.61046  0.11471  3.51750      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+      9   0.13897  3.40269  2.81647  3.30648      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     10   2.96311  3.61046  0.11471  3.51750     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     11   3.45893  0.12717  3.50729  2.84776     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     12   0.13897  3.40269  2.81647  3.30648     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     13   0.13897  3.40269  2.81647  3.30648     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     14   3.11130  2.60957  3.15859  0.17506     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     15   0.13897  3.40269  2.81647  3.30648     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     16   3.11130  2.60957  3.15859  0.17506     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     17   3.45893  0.12717  3.50729  2.84776     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     18   3.45893  0.12717  3.50729  2.84776     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     19   3.11130  2.60957  3.15859  0.17506     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     20   3.11130  2.60957  3.15859  0.17506     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     21   3.11130  2.60957  3.15859  0.17506     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     22   2.96311  3.61046  0.11471  3.51750     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     23   2.96311  3.61046  0.11471  3.51750     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     24   3.45893  0.12717  3.50729  2.84776     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     25   0.13897  3.40269  2.81647  3.30648     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     26   3.11130  2.60957  3.15859  0.17506     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     27   2.96311  3.61046  0.11471  3.51750     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     28   3.45893  0.12717  3.50729  2.84776     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     29   3.11130  2.60957  3.15859  0.17506     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     30   3.11130  2.60957  3.15859  0.17506     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     31   3.11130  2.60957  3.15859  0.17506     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     32   2.96311  3.61046  0.11471  3.51750     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     33   3.45893  0.12717  3.50729  2.84776     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     34   3.11130  2.60957  3.15859  0.17506     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     35   3.45893  0.12717  3.50729  2.84776     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     36   0.13897  3.40269  2.81647  3.30648     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     37   2.96311  3.61046  0.11471  3.51750     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     38   2.96311  3.61046  0.11471  3.51750     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     39   2.96311  3.61046  0.11471  3.51750     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     40   3.11130  2.60957  3.15859  0.17506     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     41   3.45893  0.12717  3.50729  2.84776     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     42   2.96311  3.61046  0.11471  3.51750     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     43   3.45893  0.12717  3.50729  2.84776     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     44   0.13897  3.40269  2.81647  3.30648     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     45   0.79222  2.19683  2.17515  1.13191     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01837  4.00616        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fourh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:33:01 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 333148079
+STATS LOCAL MSV       -7.4549  0.72791
+STATS LOCAL VITERBI   -8.4904  0.72791
+STATS LOCAL FORWARD   -3.4224  0.72791
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74078  1.33732  1.21673  1.32475
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.53331  3.02441  0.20344  2.88069     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fouri_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:33:06 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 260246692
+STATS LOCAL MSV       -7.3876  0.72866
+STATS LOCAL VITERBI   -8.2977  0.72866
+STATS LOCAL FORWARD   -3.4092  0.72866
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.79394  1.27631  1.26577  1.29972
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   1.03732  1.95876  1.96551  1.00928     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fourj_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:33:11 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1948886469
+STATS LOCAL MSV       -7.4799  0.72830
+STATS LOCAL VITERBI   -8.3137  0.72830
+STATS LOCAL FORWARD   -3.4645  0.72830
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82855  1.27493  1.32534  1.22353
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
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+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fourk_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:33:16 2012
+NSEQ  9
+EFFN  3.247559
+CKSUM 3053590484
+STATS LOCAL MSV       -7.9269  0.71933
+STATS LOCAL VITERBI   -7.7723  0.71933
+STATS LOCAL FORWARD   -3.9915  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63624  1.31777  1.31835  1.30940
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  0.00000        *
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+     42   0.14515  3.35591  2.78608  3.25528     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     43   3.06409  2.57953  3.11318  0.18268     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     44   3.06409  2.57953  3.11318  0.18268     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     45   0.14515  3.35591  2.78608  3.25528     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97923        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fourl_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:33:21 2012
+NSEQ  11
+EFFN  3.338135
+CKSUM 767105334
+STATS LOCAL MSV       -8.1570  0.71932
+STATS LOCAL VITERBI   -7.7500  0.71932
+STATS LOCAL FORWARD   -4.0357  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55301  1.25359  1.40308  1.35840
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  0.00000        *
+      1   2.95097  3.59276  0.11661  3.49795      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+      2   3.43879  0.12953  3.48801  2.83314      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+      3   3.43879  0.12953  3.48801  2.83314      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+      4   0.14124  3.38520  2.80513  3.28733      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+      5   3.09359  2.59831  3.14156  0.17788      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+      6   3.09359  2.59831  3.14156  0.17788      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+      7   2.95097  3.59276  0.11661  3.49795      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+      8   2.95097  3.59276  0.11661  3.49795      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+      9   0.14124  3.38520  2.80513  3.28733      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     10   3.09359  2.59831  3.14156  0.17788     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     11   3.09359  2.59831  3.14156  0.17788     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     12   3.43879  0.12953  3.48801  2.83314     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     13   0.14124  3.38520  2.80513  3.28733     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     14   3.43879  0.12953  3.48801  2.83314     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     15   0.14124  3.38520  2.80513  3.28733     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     16   3.09359  2.59831  3.14156  0.17788     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     17   3.43879  0.12953  3.48801  2.83314     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     18   3.43879  0.12953  3.48801  2.83314     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     19   3.09359  2.59831  3.14156  0.17788     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     20   3.43879  0.12953  3.48801  2.83314     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     21   3.09359  2.59831  3.14156  0.17788     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     22   2.95097  3.59276  0.11661  3.49795     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     23   2.95097  3.59276  0.11661  3.49795     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     24   3.43879  0.12953  3.48801  2.83314     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     25   0.14124  3.38520  2.80513  3.28733     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     26   3.43879  0.12953  3.48801  2.83314     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     27   2.95097  3.59276  0.11661  3.49795     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     28   3.43879  0.12953  3.48801  2.83314     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     29   3.43879  0.12953  3.48801  2.83314     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     30   3.09359  2.59831  3.14156  0.17788     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     31   2.95097  3.59276  0.11661  3.49795     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     32   2.95097  3.59276  0.11661  3.49795     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     33   3.09359  2.59831  3.14156  0.17788     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     34   3.09359  2.59831  3.14156  0.17788     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     35   3.43879  0.12953  3.48801  2.83314     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     36   0.14124  3.38520  2.80513  3.28733     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     37   2.95097  3.59276  0.11661  3.49795     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     38   2.95097  3.59276  0.11661  3.49795     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     39   2.37704  2.60293  0.39274  1.84572     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     40   3.09359  2.59831  3.14156  0.17788     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     41   3.43879  0.12953  3.48801  2.83314     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     42   0.14124  3.38520  2.80513  3.28733     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     43   3.09359  2.59831  3.14156  0.17788     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     44   0.14124  3.38520  2.80513  3.28733     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
+     45   0.14124  3.38520  2.80513  3.28733     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01856  3.99602        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fourm_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:33:27 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2504187717
+STATS LOCAL MSV       -8.1581  0.72043
+STATS LOCAL VITERBI   -8.0441  0.72043
+STATS LOCAL FORWARD   -4.0704  0.72043
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71119  1.52314  1.19729  1.20627
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   0.15719  3.27118  2.73043  3.16274      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.97980  2.52563  3.03204  0.19727     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.86982  3.47591  0.13017  3.36931     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.86982  3.47591  0.13017  3.36931     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fourn_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:33:32 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 4061062390
+STATS LOCAL MSV       -7.9683  0.72135
+STATS LOCAL VITERBI   -7.9020  0.72135
+STATS LOCAL FORWARD   -4.0040  0.72135
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.87942  1.46963  1.21765  1.13511
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   0.15719  3.27118  2.73043  3.16274      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.97980  2.52563  3.03204  0.19727     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   3.30705  0.14631  3.36166  2.73626     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.86982  3.47591  0.13017  3.36931     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   1.35471  2.59260  0.54349  2.44834     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.43440  0.61908  2.50724  1.22957     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.86982  3.47591  0.13017  3.36931     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fouro_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:33:37 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1042054282
+STATS LOCAL MSV       -7.6481  0.72791
+STATS LOCAL VITERBI   -8.4383  0.72791
+STATS LOCAL FORWARD   -3.5360  0.72791
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45660  1.45908  1.26148  1.38116
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fourp_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:33:42 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3357078393
+STATS LOCAL MSV       -7.3153  0.72879
+STATS LOCAL VITERBI   -8.3213  0.72879
+STATS LOCAL FORWARD   -3.5251  0.72879
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73799  1.30923  1.32025  1.24818
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.15554  1.00938  2.23102  0.88601      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fourq_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:33:47 2012
+NSEQ  4
+EFFN  3.324219
+CKSUM 3293610726
+STATS LOCAL MSV       -7.9677  0.71933
+STATS LOCAL VITERBI   -7.8423  0.71933
+STATS LOCAL FORWARD   -4.3589  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63635  1.44298  1.38451  1.14368
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  0.00000        *
+      1   3.43368  0.13014  3.48311  2.82941      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      2   2.94787  3.58826  0.11710  3.49298      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      3   3.43368  0.13014  3.48311  2.82941      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      4   3.43368  0.13014  3.48311  2.82941      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      5   0.14183  3.38076  2.80224  3.28247      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      6   3.08911  2.59546  3.13724  0.17860      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      7   3.08911  2.59546  3.13724  0.17860      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      8   2.94787  3.58826  0.11710  3.49298      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      9   2.94787  3.58826  0.11710  3.49298      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     10   0.14183  3.38076  2.80224  3.28247     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     11   3.08911  2.59546  3.13724  0.17860     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     12   3.08911  2.59546  3.13724  0.17860     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     13   3.08911  2.59546  3.13724  0.17860     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     14   3.08911  2.59546  3.13724  0.17860     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     15   0.14183  3.38076  2.80224  3.28247     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     16   3.08911  2.59546  3.13724  0.17860     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     17   3.43368  0.13014  3.48311  2.82941     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     18   3.43368  0.13014  3.48311  2.82941     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     19   3.08911  2.59546  3.13724  0.17860     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     20   3.08911  2.59546  3.13724  0.17860     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     21   3.08911  2.59546  3.13724  0.17860     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     22   2.94787  3.58826  0.11710  3.49298     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     23   2.94787  3.58826  0.11710  3.49298     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     24   3.43368  0.13014  3.48311  2.82941     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     25   0.14183  3.38076  2.80224  3.28247     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     26   3.43368  0.13014  3.48311  2.82941     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     27   2.94787  3.58826  0.11710  3.49298     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     28   3.08911  2.59546  3.13724  0.17860     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     29   3.43368  0.13014  3.48311  2.82941     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     30   3.08911  2.59546  3.13724  0.17860     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     31   2.94787  3.58826  0.11710  3.49298     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     32   0.14183  3.38076  2.80224  3.28247     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     33   3.08911  2.59546  3.13724  0.17860     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     34   3.08911  2.59546  3.13724  0.17860     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     35   3.43368  0.13014  3.48311  2.82941     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     36   0.14183  3.38076  2.80224  3.28247     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     37   2.94787  3.58826  0.11710  3.49298     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     38   2.94787  3.58826  0.11710  3.49298     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     39   2.94787  3.58826  0.11710  3.49298     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     40   3.08911  2.59546  3.13724  0.17860     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     41   3.43368  0.13014  3.48311  2.82941     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     42   2.94787  3.58826  0.11710  3.49298     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     43   3.08911  2.59546  3.13724  0.17860     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     44   0.14183  3.38076  2.80224  3.28247     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     45   0.14183  3.38076  2.80224  3.28247     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01861  3.99346        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fourr_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:33:52 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 865624913
+STATS LOCAL MSV       -8.0392  0.72080
+STATS LOCAL VITERBI   -7.7818  0.72080
+STATS LOCAL FORWARD   -4.1310  0.72080
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54500  1.36606  1.37837  1.27443
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   0.15719  3.27118  2.73043  3.16274      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.97980  2.52563  3.03204  0.19727     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.43088  1.34923  2.50068  0.56112     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   0.15719  3.27118  2.73043  3.16274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.86982  3.47591  0.13017  3.36931     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fours_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:33:57 2012
+NSEQ  6
+EFFN  3.454102
+CKSUM 1542454552
+STATS LOCAL MSV       -7.5502  0.71932
+STATS LOCAL VITERBI   -7.9280  0.71932
+STATS LOCAL FORWARD   -4.1162  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.91213  1.23481  1.25281  1.28865
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  0.00000        *
+      1   2.97603  3.62936  0.11271  3.53839      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+      2   3.48048  0.12470  3.52791  2.86336      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+      3   3.48048  0.12470  3.52791  2.86336      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+      4   3.13036  2.62167  3.17691  0.17209      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+      5   3.13036  2.62167  3.17691  0.17209      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+      6   2.97603  3.62936  0.11271  3.53839      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+      7   2.97603  3.62936  0.11271  3.53839      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+      8   2.97603  3.62936  0.11271  3.53839      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+      9   0.13658  3.42143  2.82860  3.32702      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     10   2.53075  1.35523  2.59881  0.53077     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     11   3.48048  0.12470  3.52791  2.86336     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     12   3.13036  2.62167  3.17691  0.17209     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     13   0.13658  3.42143  2.82860  3.32702     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     14   3.48048  0.12470  3.52791  2.86336     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     15   0.13658  3.42143  2.82860  3.32702     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     16   3.13036  2.62167  3.17691  0.17209     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     17   3.48048  0.12470  3.52791  2.86336     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     18   3.48048  0.12470  3.52791  2.86336     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     19   3.48048  0.12470  3.52791  2.86336     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     20   3.13036  2.62167  3.17691  0.17209     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     21   3.13036  2.62167  3.17691  0.17209     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     22   2.97603  3.62936  0.11271  3.53839     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     23   2.97603  3.62936  0.11271  3.53839     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     24   3.48048  0.12470  3.52791  2.86336     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     25   0.13658  3.42143  2.82860  3.32702     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     26   3.48048  0.12470  3.52791  2.86336     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     27   2.97603  3.62936  0.11271  3.53839     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     28   3.48048  0.12470  3.52791  2.86336     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     29   3.48048  0.12470  3.52791  2.86336     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     30   3.13036  2.62167  3.17691  0.17209     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     31   2.97603  3.62936  0.11271  3.53839     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     32   2.97603  3.62936  0.11271  3.53839     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     33   3.13036  2.62167  3.17691  0.17209     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     34   3.13036  2.62167  3.17691  0.17209     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     35   3.48048  0.12470  3.52791  2.86336     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     36   0.13658  3.42143  2.82860  3.32702     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     37   2.97603  3.62936  0.11271  3.53839     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     38   2.97603  3.62936  0.11271  3.53839     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     39   2.97603  3.62936  0.11271  3.53839     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     40   3.13036  2.62167  3.17691  0.17209     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     41   3.48048  0.12470  3.52791  2.86336     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     42   2.97603  3.62936  0.11271  3.53839     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     43   3.13036  2.62167  3.17691  0.17209     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     44   1.31680  2.17756  2.25927  0.66502     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
+     45   3.13036  2.62167  3.17691  0.17209     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01817  4.01712        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fourt_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:34:02 2012
+NSEQ  6
+EFFN  3.225586
+CKSUM 1438411373
+STATS LOCAL MSV       -8.1763  0.71932
+STATS LOCAL VITERBI   -7.7716  0.71932
+STATS LOCAL FORWARD   -3.7753  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72081  1.45719  1.14065  1.31462
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  0.00000        *
+      1   2.92536  3.55560  0.12074  3.45696      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      2   3.39667  0.13464  3.44765  2.80239      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      3   3.39667  0.13464  3.44765  2.80239      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      4   3.05683  2.57491  3.10619  0.18389      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      5   2.92536  3.55560  0.12074  3.45696      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      6   0.14614  3.34867  2.78135  3.24736      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      7   2.92536  3.55560  0.12074  3.45696      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      8   2.92536  3.55560  0.12074  3.45696      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      9   3.05683  2.57491  3.10619  0.18389      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     10   2.92536  3.55560  0.12074  3.45696     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     11   3.05683  2.57491  3.10619  0.18389     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     12   3.05683  2.57491  3.10619  0.18389     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     13   0.14614  3.34867  2.78135  3.24736     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     14   0.14614  3.34867  2.78135  3.24736     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     15   0.14614  3.34867  2.78135  3.24736     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     16   3.05683  2.57491  3.10619  0.18389     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     17   3.39667  0.13464  3.44765  2.80239     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     18   3.39667  0.13464  3.44765  2.80239     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     19   3.05683  2.57491  3.10619  0.18389     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     20   3.39667  0.13464  3.44765  2.80239     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     21   3.05683  2.57491  3.10619  0.18389     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     22   2.92536  3.55560  0.12074  3.45696     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     23   2.92536  3.55560  0.12074  3.45696     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     24   3.39667  0.13464  3.44765  2.80239     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     25   0.14614  3.34867  2.78135  3.24736     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     26   3.39667  0.13464  3.44765  2.80239     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     27   2.92536  3.55560  0.12074  3.45696     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     28   2.92536  3.55560  0.12074  3.45696     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     29   3.39667  0.13464  3.44765  2.80239     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     30   3.05683  2.57491  3.10619  0.18389     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     31   2.92536  3.55560  0.12074  3.45696     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     32   2.92536  3.55560  0.12074  3.45696     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     33   3.05683  2.57491  3.10619  0.18389     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     34   3.05683  2.57491  3.10619  0.18389     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     35   3.39667  0.13464  3.44765  2.80239     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     36   0.14614  3.34867  2.78135  3.24736     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     37   2.92536  3.55560  0.12074  3.45696     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     38   2.92536  3.55560  0.12074  3.45696     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     39   2.92536  3.55560  0.12074  3.45696     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     40   3.05683  2.57491  3.10619  0.18389     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     41   3.39667  0.13464  3.44765  2.80239     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     42   2.92536  3.55560  0.12074  3.45696     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     43   3.05683  2.57491  3.10619  0.18389     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     44   3.05683  2.57491  3.10619  0.18389     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     45   0.14614  3.34867  2.78135  3.24736     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01896  3.97511        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_fourteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:38:24 2012
+NSEQ  13
+EFFN  3.526123
+CKSUM 2258401781
+STATS LOCAL MSV       -7.2688  0.71933
+STATS LOCAL VITERBI   -7.6651  0.71933
+STATS LOCAL FORWARD   -4.0404  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.36154  2.16683  1.28426  1.04316
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  0.00000        *
+      1   3.15264  2.63580  3.19832  0.16869      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+      2   0.13385  3.44324  2.84268  3.35093      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+      3   3.15264  2.63580  3.19832  0.16869      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+      4   3.15264  2.63580  3.19832  0.16869      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+      5   3.15264  2.63580  3.19832  0.16869      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+      6   0.13385  3.44324  2.84268  3.35093      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+      7   2.99096  3.65126  0.11044  3.56262      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+      8   3.15264  2.63580  3.19832  0.16869      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+      9   3.15264  2.63580  3.19832  0.16869      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     10   0.13385  3.44324  2.84268  3.35093     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     11   2.99096  3.65126  0.11044  3.56262     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     12   0.75959  2.55517  1.00847  2.41146     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     13   0.13385  3.44324  2.84268  3.35093     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     14   3.15264  2.63580  3.19832  0.16869     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     15   2.99096  3.65126  0.11044  3.56262     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     16   2.99096  3.65126  0.11044  3.56262     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     17   3.50552  0.12189  3.55185  2.88142     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     18   3.15264  2.63580  3.19832  0.16869     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     19   3.15264  2.63580  3.19832  0.16869     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     20   2.99096  3.65126  0.11044  3.56262     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     21   0.13385  3.44324  2.84268  3.35093     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     22   2.99096  3.65126  0.11044  3.56262     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     23   2.99096  3.65126  0.11044  3.56262     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     24   3.15264  2.63580  3.19832  0.16869     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     25   3.15264  2.63580  3.19832  0.16869     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     26   3.50552  0.12189  3.55185  2.88142     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     27   0.13385  3.44324  2.84268  3.35093     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     28   3.15264  2.63580  3.19832  0.16869     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     29   0.13385  3.44324  2.84268  3.35093     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     30   3.15264  2.63580  3.19832  0.16869     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     31   2.99096  3.65126  0.11044  3.56262     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     32   2.99096  3.65126  0.11044  3.56262     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     33   3.15264  2.63580  3.19832  0.16869     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     34   3.15264  2.63580  3.19832  0.16869     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     35   2.99096  3.65126  0.11044  3.56262     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     36   0.13385  3.44324  2.84268  3.35093     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     37   2.99096  3.65126  0.11044  3.56262     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     38   3.15264  2.63580  3.19832  0.16869     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     39   2.99096  3.65126  0.11044  3.56262     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     40   3.50552  0.12189  3.55185  2.88142     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     41   3.15264  2.63580  3.19832  0.16869     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     42   0.13385  3.44324  2.84268  3.35093     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     43   3.15264  2.63580  3.19832  0.16869     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     44   0.13385  3.44324  2.84268  3.35093     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     45   0.13385  3.44324  2.84268  3.35093     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01793  4.03001        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:35:36 2012
+NSEQ  6
+EFFN  3.506836
+CKSUM 1997454489
+STATS LOCAL MSV       -7.2053  0.71932
+STATS LOCAL VITERBI   -7.6533  0.71932
+STATS LOCAL FORWARD   -4.0088  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81914  1.45131  1.19033  1.20581
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  0.00000        *
+      1   2.98701  3.64546  0.11104  3.55619      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+      2   3.49888  0.12263  3.54550  2.87663      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+      3   3.49888  0.12263  3.54550  2.87663      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+      4   0.13457  3.43745  2.83894  3.34459      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+      5   3.49888  0.12263  3.54550  2.87663      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+      6   3.14671  2.63204  3.19263  0.16959      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+      7   0.13457  3.43745  2.83894  3.34459      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+      8   2.98701  3.64546  0.11104  3.55619      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+      9   2.98701  3.64546  0.11104  3.55619      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     10   2.43781  0.94522  2.50951  0.81476     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     11   3.14671  2.63204  3.19263  0.16959     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     12   3.14671  2.63204  3.19263  0.16959     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     13   2.98701  3.64546  0.11104  3.55619     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     14   2.53262  0.59011  2.60406  1.22993     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     15   3.14671  2.63204  3.19263  0.16959     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     16   3.49888  0.12263  3.54550  2.87663     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     17   3.49888  0.12263  3.54550  2.87663     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     18   3.14671  2.63204  3.19263  0.16959     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     19   0.13457  3.43745  2.83894  3.34459     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     20   3.14671  2.63204  3.19263  0.16959     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     21   3.14671  2.63204  3.19263  0.16959     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     22   2.98701  3.64546  0.11104  3.55619     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     23   2.98701  3.64546  0.11104  3.55619     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     24   3.49888  0.12263  3.54550  2.87663     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     25   0.13457  3.43745  2.83894  3.34459     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     26   3.49888  0.12263  3.54550  2.87663     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     27   2.98701  3.64546  0.11104  3.55619     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     28   3.14671  2.63204  3.19263  0.16959     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     29   3.49888  0.12263  3.54550  2.87663     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     30   3.14671  2.63204  3.19263  0.16959     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     31   2.98701  3.64546  0.11104  3.55619     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     32   2.98701  3.64546  0.11104  3.55619     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     33   3.14671  2.63204  3.19263  0.16959     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     34   3.14671  2.63204  3.19263  0.16959     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     35   2.98701  3.64546  0.11104  3.55619     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     36   0.13457  3.43745  2.83894  3.34459     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     37   2.98701  3.64546  0.11104  3.55619     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     38   2.98701  3.64546  0.11104  3.55619     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     39   2.98701  3.64546  0.11104  3.55619     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     40   3.14671  2.63204  3.19263  0.16959     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     41   3.49888  0.12263  3.54550  2.87663     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     42   2.98701  3.64546  0.11104  3.55619     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     43   3.14671  2.63204  3.19263  0.16959     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     44   0.13457  3.43745  2.83894  3.34459     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
+     45   3.14671  2.63204  3.19263  0.16959     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01800  4.02657        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_nineteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:41:10 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2976878512
+STATS LOCAL MSV       -7.5610  0.72760
+STATS LOCAL VITERBI   -8.2006  0.72760
+STATS LOCAL FORWARD   -3.4835  0.72760
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74298  1.29095  1.16722  1.43229
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_onea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:30:35 2012
+NSEQ  9
+EFFN  3.291504
+CKSUM 2632514188
+STATS LOCAL MSV       -8.0045  0.71932
+STATS LOCAL VITERBI   -7.8075  0.71932
+STATS LOCAL FORWARD   -3.8898  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.95617  1.19844  1.04918  1.57643
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  0.00000        *
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+      2   3.42154  0.13160  3.47149  2.82057      2 - -
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+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     43   2.94052  3.57756  0.11828  3.48118     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     44   3.42154  0.13160  3.47149  2.82057     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     45   3.07849  2.58870  3.12703  0.18032     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01872  3.98741        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_oneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:30:43 2012
+NSEQ  4
+EFFN  3.074219
+CKSUM 2141832487
+STATS LOCAL MSV       -8.0288  0.71933
+STATS LOCAL VITERBI   -7.6965  0.71933
+STATS LOCAL FORWARD   -3.8244  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.04658  1.16114  0.99931  1.66304
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  0.00000        *
+      1   2.88875  3.50292  0.12688  3.39898      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+      2   3.33731  0.14224  3.39072  2.75871      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+      3   2.88875  3.50292  0.12688  3.39898      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+      4   2.88875  3.50292  0.12688  3.39898      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+      5   3.33731  0.14224  3.39072  2.75871      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+      6   3.33731  0.14224  3.39072  2.75871      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+      7   2.88875  3.50292  0.12688  3.39898      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+      8   3.00564  2.54221  3.05693  0.19265      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+      9   0.15336  3.29732  2.74769  3.19126      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     10   2.88875  3.50292  0.12688  3.39898     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     11   2.88875  3.50292  0.12688  3.39898     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     12   3.33731  0.14224  3.39072  2.75871     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     13   3.00564  2.54221  3.05693  0.19265     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     14   3.00564  2.54221  3.05693  0.19265     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     15   2.88875  3.50292  0.12688  3.39898     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     16   3.33731  0.14224  3.39072  2.75871     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     17   3.33731  0.14224  3.39072  2.75871     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     18   3.00564  2.54221  3.05693  0.19265     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     19   0.15336  3.29732  2.74769  3.19126     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     20   3.33731  0.14224  3.39072  2.75871     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     21   2.88875  3.50292  0.12688  3.39898     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     22   2.88875  3.50292  0.12688  3.39898     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     23   3.33731  0.14224  3.39072  2.75871     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     24   3.33731  0.14224  3.39072  2.75871     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     25   0.15336  3.29732  2.74769  3.19126     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     26   3.33731  0.14224  3.39072  2.75871     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     27   2.88875  3.50292  0.12688  3.39898     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     28   3.00564  2.54221  3.05693  0.19265     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     29   3.33731  0.14224  3.39072  2.75871     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     30   3.00564  2.54221  3.05693  0.19265     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     31   2.88875  3.50292  0.12688  3.39898     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     32   2.88875  3.50292  0.12688  3.39898     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     33   3.33731  0.14224  3.39072  2.75871     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     34   3.33731  0.14224  3.39072  2.75871     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     35   2.88875  3.50292  0.12688  3.39898     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     36   0.15336  3.29732  2.74769  3.19126     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     37   2.88875  3.50292  0.12688  3.39898     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     38   2.88875  3.50292  0.12688  3.39898     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     39   2.88875  3.50292  0.12688  3.39898     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     40   3.00564  2.54221  3.05693  0.19265     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     41   3.33731  0.14224  3.39072  2.75871     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     42   2.88875  3.50292  0.12688  3.39898     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     43   2.88875  3.50292  0.12688  3.39898     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     44   3.33731  0.14224  3.39072  2.75871     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
+     45   3.00564  2.54221  3.05693  0.19265     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01952  3.94627        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_onec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:30:49 2012
+NSEQ  20
+EFFN  3.178711
+CKSUM 1515020791
+STATS LOCAL MSV       -7.9446  0.71931
+STATS LOCAL VITERBI   -7.7967  0.71931
+STATS LOCAL FORWARD   -4.1571  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92667  1.26232  1.04143  1.52134
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  0.00000        *
+      1   2.91430  3.53962  0.12257  3.43936      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      2   3.37862  0.13690  3.43035  2.78916      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      3   2.91430  3.53962  0.12257  3.43936      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      4   2.91430  3.53962  0.12257  3.43936      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      5   3.37862  0.13690  3.43035  2.78916      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      6   3.04119  2.56493  3.09115  0.18651      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      7   0.14829  3.33304  2.77114  3.23028      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      8   3.37862  0.13690  3.43035  2.78916      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      9   2.91430  3.53962  0.12257  3.43936      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     10   2.91430  3.53962  0.12257  3.43936     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     11   2.91430  3.53962  0.12257  3.43936     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     12   0.14829  3.33304  2.77114  3.23028     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     13   3.04119  2.56493  3.09115  0.18651     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     14   0.14829  3.33304  2.77114  3.23028     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     15   3.04119  2.56493  3.09115  0.18651     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     16   3.37862  0.13690  3.43035  2.78916     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     17   3.37862  0.13690  3.43035  2.78916     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     18   3.04119  2.56493  3.09115  0.18651     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     19   2.91430  3.53962  0.12257  3.43936     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     20   3.04119  2.56493  3.09115  0.18651     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     21   2.91430  3.53962  0.12257  3.43936     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     22   2.91430  3.53962  0.12257  3.43936     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     23   3.37862  0.13690  3.43035  2.78916     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     24   3.37862  0.13690  3.43035  2.78916     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     25   0.14829  3.33304  2.77114  3.23028     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     26   3.37862  0.13690  3.43035  2.78916     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     27   2.91430  3.53962  0.12257  3.43936     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     28   2.71071  1.85835  2.77216  0.33540     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     29   3.37862  0.13690  3.43035  2.78916     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     30   3.04119  2.56493  3.09115  0.18651     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     31   2.91430  3.53962  0.12257  3.43936     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     32   3.04119  2.56493  3.09115  0.18651     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     33   3.37862  0.13690  3.43035  2.78916     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     34   3.37862  0.13690  3.43035  2.78916     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     35   2.91430  3.53962  0.12257  3.43936     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     36   0.14829  3.33304  2.77114  3.23028     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     37   2.91430  3.53962  0.12257  3.43936     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     38   2.91430  3.53962  0.12257  3.43936     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     39   2.91430  3.53962  0.12257  3.43936     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     40   3.04119  2.56493  3.09115  0.18651     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     41   3.37862  0.13690  3.43035  2.78916     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     42   2.91430  3.53962  0.12257  3.43936     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     43   2.91430  3.53962  0.12257  3.43936     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     44   3.37862  0.13690  3.43035  2.78916     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     45   3.04119  2.56493  3.09115  0.18651     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01913  3.96627        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_oned_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:30:56 2012
+NSEQ  9
+EFFN  3.212402
+CKSUM 274027828
+STATS LOCAL MSV       -8.1725  0.71931
+STATS LOCAL VITERBI   -7.7872  0.71931
+STATS LOCAL FORWARD   -3.7945  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.07732  1.14229  0.94269  1.79536
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  0.00000        *
+      1   2.92227  3.55113  0.12125  3.45204      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+      2   3.39162  0.13527  3.44282  2.79869      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+      3   2.92227  3.55113  0.12125  3.45204      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+      4   2.92227  3.55113  0.12125  3.45204      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+      5   3.39162  0.13527  3.44282  2.79869      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+      6   3.39162  0.13527  3.44282  2.79869      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+      7   2.92227  3.55113  0.12125  3.45204      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+      8   3.39162  0.13527  3.44282  2.79869      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+      9   2.92227  3.55113  0.12125  3.45204      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     10   2.92227  3.55113  0.12125  3.45204     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     11   2.92227  3.55113  0.12125  3.45204     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     12   0.36910  2.78519  1.73448  2.65307     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     13   3.05245  2.57211  3.10198  0.18462     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     14   0.14674  3.34430  2.77850  3.24258     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     15   3.05245  2.57211  3.10198  0.18462     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     16   3.39162  0.13527  3.44282  2.79869     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     17   3.39162  0.13527  3.44282  2.79869     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     18   3.39162  0.13527  3.44282  2.79869     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     19   2.92227  3.55113  0.12125  3.45204     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     20   3.05245  2.57211  3.10198  0.18462     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     21   2.92227  3.55113  0.12125  3.45204     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     22   2.92227  3.55113  0.12125  3.45204     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     23   3.39162  0.13527  3.44282  2.79869     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     24   3.39162  0.13527  3.44282  2.79869     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     25   0.14674  3.34430  2.77850  3.24258     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     26   3.39162  0.13527  3.44282  2.79869     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     27   2.92227  3.55113  0.12125  3.45204     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     28   2.39765  1.07670  2.46934  0.72627     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     29   3.39162  0.13527  3.44282  2.79869     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     30   3.05245  2.57211  3.10198  0.18462     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     31   2.92227  3.55113  0.12125  3.45204     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     32   2.92227  3.55113  0.12125  3.45204     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     33   3.39162  0.13527  3.44282  2.79869     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     34   3.39162  0.13527  3.44282  2.79869     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     35   2.92227  3.55113  0.12125  3.45204     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     36   0.14674  3.34430  2.77850  3.24258     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     37   2.92227  3.55113  0.12125  3.45204     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     38   2.92227  3.55113  0.12125  3.45204     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     39   2.92227  3.55113  0.12125  3.45204     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     40   3.05245  2.57211  3.10198  0.18462     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     41   3.39162  0.13527  3.44282  2.79869     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     42   2.92227  3.55113  0.12125  3.45204     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     43   2.92227  3.55113  0.12125  3.45204     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     44   3.39162  0.13527  3.44282  2.79869     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
+     45   3.05245  2.57211  3.10198  0.18462     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01900  3.97263        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_onee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:31:04 2012
+NSEQ  22
+EFFN  3.391846
+CKSUM 2940126106
+STATS LOCAL MSV       -7.2020  0.71933
+STATS LOCAL VITERBI   -7.7925  0.71933
+STATS LOCAL FORWARD   -4.0922  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.06447  1.20648  1.02736  1.53286
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  0.00000        *
+      1   2.96274  3.60992  0.11476  3.51690      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+      2   3.45832  0.12724  3.50670  2.84731      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+      3   2.96274  3.60992  0.11476  3.51690      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+      4   2.96274  3.60992  0.11476  3.51690      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+      5   3.45832  0.12724  3.50670  2.84731      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+      6   3.07353  0.22642  3.13365  2.18210      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+      7   0.13904  3.40215  2.81612  3.30590      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+      8   2.78093  1.89402  2.84051  0.31587      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+      9   2.96274  3.60992  0.11476  3.51690      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     10   2.96274  3.60992  0.11476  3.51690     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     11   2.96274  3.60992  0.11476  3.51690     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     12   3.11076  2.60922  3.15807  0.17515     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     13   3.11076  2.60922  3.15807  0.17515     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     14   1.58973  2.23205  2.37090  0.51867     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     15   0.36529  2.81953  1.72361  2.68896     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     16   3.45832  0.12724  3.50670  2.84731     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     17   3.45832  0.12724  3.50670  2.84731     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     18   3.11076  2.60922  3.15807  0.17515     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     19   2.96274  3.60992  0.11476  3.51690     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     20   3.11076  2.60922  3.15807  0.17515     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     21   2.96274  3.60992  0.11476  3.51690     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     22   2.96274  3.60992  0.11476  3.51690     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.12907  4.02389  2.27105  1.46634  0.26236  1.09861  0.40547
+     23   3.27131  0.15130  3.32731  2.70960     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03989  3.93471  3.93471  1.46634  0.26236  0.29755  1.35725
+     24   3.45832  0.12724  3.50670  2.84731     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     25   0.13904  3.40215  2.81612  3.30590     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     26   3.45832  0.12724  3.50670  2.84731     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     27   2.96274  3.60992  0.11476  3.51690     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     28   3.45832  0.12724  3.50670  2.84731     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     29   3.45832  0.12724  3.50670  2.84731     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     30   3.11076  2.60922  3.15807  0.17515     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     31   2.96274  3.60992  0.11476  3.51690     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     32   3.11076  2.60922  3.15807  0.17515     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     33   3.45832  0.12724  3.50670  2.84731     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     34   3.45832  0.12724  3.50670  2.84731     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     35   2.96274  3.60992  0.11476  3.51690     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     36   0.13904  3.40215  2.81612  3.30590     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     37   2.96274  3.60992  0.11476  3.51690     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     38   2.96274  3.60992  0.11476  3.51690     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     39   2.96274  3.60992  0.11476  3.51690     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     40   3.11076  2.60922  3.15807  0.17515     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     41   3.45832  0.12724  3.50670  2.84731     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     42   2.96274  3.60992  0.11476  3.51690     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     43   2.96274  3.60992  0.11476  3.51690     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     44   3.45832  0.12724  3.50670  2.84731     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
+     45   3.11076  2.60922  3.15807  0.17515     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01838  4.00585        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_onef_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:31:11 2012
+NSEQ  12
+EFFN  3.336914
+CKSUM 485870885
+STATS LOCAL MSV       -8.2262  0.71933
+STATS LOCAL VITERBI   -7.7462  0.71933
+STATS LOCAL FORWARD   -4.1365  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.15126  1.17982  0.99685  1.57365
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  0.00000        *
+      1   2.95070  3.59237  0.11666  3.49752      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      2   3.43835  0.12958  3.48758  2.83281      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      3   2.95070  3.59237  0.11666  3.49752      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      4   2.95070  3.59237  0.11666  3.49752      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      5   3.43835  0.12958  3.48758  2.83281      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      6   3.43835  0.12958  3.48758  2.83281      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      7   0.14130  3.38481  2.80488  3.28690      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      8   3.43835  0.12958  3.48758  2.83281      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      9   2.95070  3.59237  0.11666  3.49752      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     10   2.95070  3.59237  0.11666  3.49752     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     11   2.95070  3.59237  0.11666  3.49752     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     12   3.09320  2.59806  3.14118  0.17794     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     13   1.88666  0.40908  2.54597  2.24656     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     14   1.88666  0.40908  2.54597  2.24656     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     15   2.95070  3.59237  0.11666  3.49752     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     16   3.43835  0.12958  3.48758  2.83281     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     17   3.43835  0.12958  3.48758  2.83281     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     18   3.43835  0.12958  3.48758  2.83281     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     19   2.95070  3.59237  0.11666  3.49752     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     20   3.09320  2.59806  3.14118  0.17794     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     21   2.95070  3.59237  0.11666  3.49752     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     22   2.95070  3.59237  0.11666  3.49752     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     23   3.43835  0.12958  3.48758  2.83281     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     24   3.09320  2.59806  3.14118  0.17794     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     25   0.14130  3.38481  2.80488  3.28690     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     26   3.43835  0.12958  3.48758  2.83281     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     27   2.00701  3.04952  0.26854  2.92367     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     28   3.09320  2.59806  3.14118  0.17794     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     29   3.43835  0.12958  3.48758  2.83281     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     30   3.09320  2.59806  3.14118  0.17794     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     31   2.95070  3.59237  0.11666  3.49752     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     32   3.09320  2.59806  3.14118  0.17794     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     33   3.43835  0.12958  3.48758  2.83281     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     34   3.43835  0.12958  3.48758  2.83281     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     35   2.95070  3.59237  0.11666  3.49752     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     36   0.14130  3.38481  2.80488  3.28690     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     37   2.95070  3.59237  0.11666  3.49752     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     38   2.95070  3.59237  0.11666  3.49752     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     39   2.95070  3.59237  0.11666  3.49752     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     40   3.09320  2.59806  3.14118  0.17794     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     41   3.43835  0.12958  3.48758  2.83281     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     42   2.95070  3.59237  0.11666  3.49752     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     43   2.95070  3.59237  0.11666  3.49752     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     44   3.09320  2.59806  3.14118  0.17794     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     45   3.09320  2.59806  3.14118  0.17794     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01856  3.99580        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_oneg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:31:17 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2296771254
+STATS LOCAL MSV       -7.5226  0.72702
+STATS LOCAL VITERBI   -8.3896  0.72702
+STATS LOCAL FORWARD   -3.3649  0.72702
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92402  1.20053  1.03636  1.61847
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_oneh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:31:22 2012
+NSEQ  25
+EFFN  3.195190
+CKSUM 3061172173
+STATS LOCAL MSV       -8.2269  0.71932
+STATS LOCAL VITERBI   -7.7433  0.71932
+STATS LOCAL FORWARD   -4.0483  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82111  1.32343  1.14287  1.37424
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  0.00000        *
+      1   2.91821  3.54527  0.12192  3.44558      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+      2   3.38500  0.13610  3.43647  2.79384      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+      3   2.91821  3.54527  0.12192  3.44558      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+      4   2.91821  3.54527  0.12192  3.44558      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+      5   3.38500  0.13610  3.43647  2.79384      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+      6   3.04671  2.56845  3.09646  0.18558      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+      7   0.14753  3.33857  2.77475  3.23631      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+      8   0.14753  3.33857  2.77475  3.23631      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+      9   2.91821  3.54527  0.12192  3.44558      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     10   2.91821  3.54527  0.12192  3.44558     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     11   2.91821  3.54527  0.12192  3.44558     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     12   3.38500  0.13610  3.43647  2.79384     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     13   3.04671  2.56845  3.09646  0.18558     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     14   3.04671  2.56845  3.09646  0.18558     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     15   2.91821  3.54527  0.12192  3.44558     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     16   3.38500  0.13610  3.43647  2.79384     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     17   3.04671  2.56845  3.09646  0.18558     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     18   3.38500  0.13610  3.43647  2.79384     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     19   3.04671  2.56845  3.09646  0.18558     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     20   3.04671  2.56845  3.09646  0.18558     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     21   0.14753  3.33857  2.77475  3.23631     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     22   2.91821  3.54527  0.12192  3.44558     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     23   3.38500  0.13610  3.43647  2.79384     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     24   3.38500  0.13610  3.43647  2.79384     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     25   0.14753  3.33857  2.77475  3.23631     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     26   3.38500  0.13610  3.43647  2.79384     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     27   2.91821  3.54527  0.12192  3.44558     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     28   3.04671  2.56845  3.09646  0.18558     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     29   3.04671  2.56845  3.09646  0.18558     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     30   3.38500  0.13610  3.43647  2.79384     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     31   2.91821  3.54527  0.12192  3.44558     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     32   0.14753  3.33857  2.77475  3.23631     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     33   3.04671  2.56845  3.09646  0.18558     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     34   3.38500  0.13610  3.43647  2.79384     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     35   2.91821  3.54527  0.12192  3.44558     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     36   0.14753  3.33857  2.77475  3.23631     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     37   2.91821  3.54527  0.12192  3.44558     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     38   3.04671  2.56845  3.09646  0.18558     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     39   2.91821  3.54527  0.12192  3.44558     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     40   3.04671  2.56845  3.09646  0.18558     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     41   3.38500  0.13610  3.43647  2.79384     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     42   2.91821  3.54527  0.12192  3.44558     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     43   2.91821  3.54527  0.12192  3.44558     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     44   3.38500  0.13610  3.43647  2.79384     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
+     45   3.04671  2.56845  3.09646  0.18558     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01907  3.96938        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_onei_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:31:28 2012
+NSEQ  4
+EFFN  3.246094
+CKSUM 767341417
+STATS LOCAL MSV       -8.0857  0.71932
+STATS LOCAL VITERBI   -7.7356  0.71932
+STATS LOCAL FORWARD   -4.4479  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.19748  1.31361  1.14567  1.19714
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  0.00000        *
+      1   2.93012  3.56249  0.11996  3.46456      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      2   3.40447  0.13368  3.45513  2.80810      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      3   2.93012  3.56249  0.11996  3.46456      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      4   2.93012  3.56249  0.11996  3.46456      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      5   3.40447  0.13368  3.45513  2.80810      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      6   3.06361  2.57923  3.11272  0.18276      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      7   3.06361  2.57923  3.11272  0.18276      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      8   3.06361  2.57923  3.11272  0.18276      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      9   2.93012  3.56249  0.11996  3.46456      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     10   2.93012  3.56249  0.11996  3.46456     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     11   2.93012  3.56249  0.11996  3.46456     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     12   3.40447  0.13368  3.45513  2.80810     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     13   3.06361  2.57923  3.11272  0.18276     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     14   3.06361  2.57923  3.11272  0.18276     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     15   2.93012  3.56249  0.11996  3.46456     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     16   3.40447  0.13368  3.45513  2.80810     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     17   3.40447  0.13368  3.45513  2.80810     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     18   3.40447  0.13368  3.45513  2.80810     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     19   3.06361  2.57923  3.11272  0.18276     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     20   3.06361  2.57923  3.11272  0.18276     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     21   0.14522  3.35543  2.78576  3.25475     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     22   2.93012  3.56249  0.11996  3.46456     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     23   3.40447  0.13368  3.45513  2.80810     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     24   3.40447  0.13368  3.45513  2.80810     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     25   3.06361  2.57923  3.11272  0.18276     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     26   3.40447  0.13368  3.45513  2.80810     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     27   2.93012  3.56249  0.11996  3.46456     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     28   3.06361  2.57923  3.11272  0.18276     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     29   3.06361  2.57923  3.11272  0.18276     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     30   3.06361  2.57923  3.11272  0.18276     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     31   2.93012  3.56249  0.11996  3.46456     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     32   0.14522  3.35543  2.78576  3.25475     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     33   3.06361  2.57923  3.11272  0.18276     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     34   3.40447  0.13368  3.45513  2.80810     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     35   2.93012  3.56249  0.11996  3.46456     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     36   0.14522  3.35543  2.78576  3.25475     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     37   2.93012  3.56249  0.11996  3.46456     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     38   3.06361  2.57923  3.11272  0.18276     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     39   2.93012  3.56249  0.11996  3.46456     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     40   3.06361  2.57923  3.11272  0.18276     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     41   3.40447  0.13368  3.45513  2.80810     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     42   2.93012  3.56249  0.11996  3.46456     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     43   2.93012  3.56249  0.11996  3.46456     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     44   3.40447  0.13368  3.45513  2.80810     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     45   3.06361  2.57923  3.11272  0.18276     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97895        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_onej_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:31:34 2012
+NSEQ  23
+EFFN  3.270874
+CKSUM 1661500112
+STATS LOCAL MSV       -8.0611  0.71932
+STATS LOCAL VITERBI   -7.7573  0.71932
+STATS LOCAL FORWARD   -4.3597  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.05613  1.31125  1.14336  1.25941
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  0.00000        *
+      1   2.93582  3.57075  0.11904  3.47366      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+      2   3.41382  0.13253  3.46409  2.81493      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+      3   2.93582  3.57075  0.11904  3.47366      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+      4   2.93582  3.57075  0.11904  3.47366      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+      5   3.41382  0.13253  3.46409  2.81493      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+      6   3.07175  2.58441  3.12055  0.18142      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+      7   3.07175  2.58441  3.12055  0.18142      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+      8   3.07175  2.58441  3.12055  0.18142      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+      9   2.93582  3.57075  0.11904  3.47366      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     10   2.93582  3.57075  0.11904  3.47366     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     11   2.93582  3.57075  0.11904  3.47366     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     12   3.41382  0.13253  3.46409  2.81493     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     13   3.07175  2.58441  3.12055  0.18142     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     14   3.07175  2.58441  3.12055  0.18142     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     15   2.93582  3.57075  0.11904  3.47366     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     16   3.41382  0.13253  3.46409  2.81493     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     17   3.41382  0.13253  3.46409  2.81493     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     18   3.41382  0.13253  3.46409  2.81493     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     19   3.07175  2.58441  3.12055  0.18142     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     20   3.07175  2.58441  3.12055  0.18142     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     21   0.14412  3.36353  2.79104  3.26362     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     22   2.93582  3.57075  0.11904  3.47366     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     23   3.41382  0.13253  3.46409  2.81493     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     24   3.41382  0.13253  3.46409  2.81493     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     25   0.14412  3.36353  2.79104  3.26362     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     26   3.41382  0.13253  3.46409  2.81493     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     27   2.93582  3.57075  0.11904  3.47366     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     28   3.07175  2.58441  3.12055  0.18142     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     29   3.07175  2.58441  3.12055  0.18142     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     30   2.77009  1.93037  2.82972  0.31031     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     31   2.93582  3.57075  0.11904  3.47366     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     32   0.14412  3.36353  2.79104  3.26362     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     33   3.07175  2.58441  3.12055  0.18142     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     34   3.41382  0.13253  3.46409  2.81493     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     35   2.93582  3.57075  0.11904  3.47366     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     36   0.14412  3.36353  2.79104  3.26362     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     37   2.93582  3.57075  0.11904  3.47366     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     38   3.07175  2.58441  3.12055  0.18142     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     39   2.93582  3.57075  0.11904  3.47366     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     40   3.07175  2.58441  3.12055  0.18142     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     41   3.41382  0.13253  3.46409  2.81493     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     42   2.93582  3.57075  0.11904  3.47366     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     43   2.93582  3.57075  0.11904  3.47366     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     44   3.41382  0.13253  3.46409  2.81493     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
+     45   3.07175  2.58441  3.12055  0.18142     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01879  3.98358        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_onek_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:31:54 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 427469681
+STATS LOCAL MSV       -8.0634  0.72029
+STATS LOCAL VITERBI   -7.6566  0.72029
+STATS LOCAL FORWARD   -4.3376  0.72029
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.80677  1.45356  1.14412  1.26027
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   3.30705  0.14631  3.36166  2.73626     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   3.30705  0.14631  3.36166  2.73626     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   0.15719  3.27118  2.73043  3.16274     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   3.30705  0.14631  3.36166  2.73626     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_sevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:35:04 2012
+NSEQ  18
+EFFN  3.563965
+CKSUM 1492424210
+STATS LOCAL MSV       -7.2875  0.71932
+STATS LOCAL VITERBI   -7.5847  0.71932
+STATS LOCAL FORWARD   -3.8412  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.77673  1.34258  1.12915  1.40108
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  0.00000        *
+      1   2.99862  3.66252  0.10930  3.57508      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      2   3.51842  0.12048  3.56419  2.89070      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      3   2.45587  0.80883  2.52786  0.94417      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      4   0.13247  3.45449  2.84993  3.36328      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      5   3.16417  2.64312  3.20941  0.16696      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      6   3.51842  0.12048  3.56419  2.89070      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      7   2.99862  3.66252  0.10930  3.57508      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      8   2.99862  3.66252  0.10930  3.57508      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      9   2.99862  3.66252  0.10930  3.57508      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     10   3.16417  2.64312  3.20941  0.16696     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     11   3.16417  2.64312  3.20941  0.16696     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     12   3.51842  0.12048  3.56419  2.89070     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     13   0.13247  3.45449  2.84993  3.36328     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     14   3.16417  2.64312  3.20941  0.16696     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     15   3.16417  2.64312  3.20941  0.16696     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     16   3.51842  0.12048  3.56419  2.89070     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     17   3.51842  0.12048  3.56419  2.89070     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     18   3.51842  0.12048  3.56419  2.89070     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     19   2.99862  3.66252  0.10930  3.57508     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     20   1.09883  1.59068  2.07002  1.08836     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     21   3.16417  2.64312  3.20941  0.16696     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     22   2.99862  3.66252  0.10930  3.57508     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     23   2.99862  3.66252  0.10930  3.57508     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     24   3.51842  0.12048  3.56419  2.89070     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     25   0.13247  3.45449  2.84993  3.36328     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     26   3.51842  0.12048  3.56419  2.89070     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     27   2.99862  3.66252  0.10930  3.57508     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     28   3.16417  2.64312  3.20941  0.16696     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     29   3.51842  0.12048  3.56419  2.89070     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     30   3.16417  2.64312  3.20941  0.16696     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     31   2.99862  3.66252  0.10930  3.57508     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     32   2.99862  3.66252  0.10930  3.57508     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     33   3.51842  0.12048  3.56419  2.89070     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     34   3.16417  2.64312  3.20941  0.16696     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     35   2.99862  3.66252  0.10930  3.57508     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     36   0.13247  3.45449  2.84993  3.36328     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     37   2.99862  3.66252  0.10930  3.57508     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     38   2.99862  3.66252  0.10930  3.57508     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     39   2.99862  3.66252  0.10930  3.57508     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     40   3.16417  2.64312  3.20941  0.16696     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     41   3.51842  0.12048  3.56419  2.89070     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     42   2.99862  3.66252  0.10930  3.57508     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     43   0.13247  3.45449  2.84993  3.36328     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     44   0.13247  3.45449  2.84993  3.36328     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     45   1.79664  2.31697  2.50966  0.42422     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01781  4.03671        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_sevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:35:10 2012
+NSEQ  7
+EFFN  3.496582
+CKSUM 1558608
+STATS LOCAL MSV       -7.3590  0.71933
+STATS LOCAL VITERBI   -7.7029  0.71933
+STATS LOCAL FORWARD   -4.0423  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.58896  1.55480  1.18718  1.27457
+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  0.00000        *
+      1   0.13496  3.43436  2.83695  3.34119      1 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
+     45   0.84492  2.19039  2.18152  1.06229     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01803  4.02474        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_seventeena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:38:53 2012
+NSEQ  5
+EFFN  3.149414
+CKSUM 613401642
+STATS LOCAL MSV       -8.0549  0.71933
+STATS LOCAL VITERBI   -7.6860  0.71933
+STATS LOCAL FORWARD   -4.2074  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82217  1.20881  1.14629  1.50525
+          1.38629  1.38629  1.38629  1.38629
+          0.03810  3.97957  3.97957  1.46634  0.26236  0.00000        *
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+      2   3.03132  2.55863  3.08165  0.18819      2 - -
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+      3   3.36719  0.13835  3.41939  2.78075      3 - -
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+          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
+     43   2.90726  3.52948  0.12374  3.42820     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
+     44   3.03132  2.55863  3.08165  0.18819     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
+     45   0.14968  3.32315  2.76467  3.21947     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01923  3.96070        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_seventeenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:39:00 2012
+NSEQ  5
+EFFN  3.159180
+CKSUM 1305453752
+STATS LOCAL MSV       -8.1369  0.71931
+STATS LOCAL VITERBI   -7.7407  0.71931
+STATS LOCAL FORWARD   -4.3131  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.05240  1.20627  1.09569  1.43569
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  0.00000        *
+      1   2.90962  3.53288  0.12335  3.43193      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+      2   3.03462  2.56074  3.08483  0.18763      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+      3   3.37101  0.13787  3.42306  2.78357      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+      4   3.37101  0.13787  3.42306  2.78357      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+      5   0.14921  3.32646  2.76683  3.22308      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+      6   3.03462  2.56074  3.08483  0.18763      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+      7   2.90962  3.53288  0.12335  3.43193      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+      8   2.90962  3.53288  0.12335  3.43193      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+      9   0.14921  3.32646  2.76683  3.22308      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     10   3.03462  2.56074  3.08483  0.18763     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     11   3.03462  2.56074  3.08483  0.18763     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     12   3.37101  0.13787  3.42306  2.78357     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     13   3.37101  0.13787  3.42306  2.78357     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     14   2.90962  3.53288  0.12335  3.43193     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     15   3.03462  2.56074  3.08483  0.18763     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     16   3.03462  2.56074  3.08483  0.18763     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     17   3.37101  0.13787  3.42306  2.78357     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     18   3.37101  0.13787  3.42306  2.78357     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     19   3.37101  0.13787  3.42306  2.78357     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     20   2.90962  3.53288  0.12335  3.43193     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     21   2.90962  3.53288  0.12335  3.43193     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     22   2.90962  3.53288  0.12335  3.43193     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     23   3.37101  0.13787  3.42306  2.78357     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     24   3.37101  0.13787  3.42306  2.78357     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     25   0.14921  3.32646  2.76683  3.22308     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     26   3.37101  0.13787  3.42306  2.78357     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     27   2.90962  3.53288  0.12335  3.43193     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     28   3.03462  2.56074  3.08483  0.18763     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     29   3.37101  0.13787  3.42306  2.78357     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     30   3.03462  2.56074  3.08483  0.18763     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     31   2.90962  3.53288  0.12335  3.43193     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     32   2.90962  3.53288  0.12335  3.43193     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     33   3.37101  0.13787  3.42306  2.78357     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     34   3.03462  2.56074  3.08483  0.18763     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     35   2.90962  3.53288  0.12335  3.43193     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     36   0.14921  3.32646  2.76683  3.22308     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     37   2.90962  3.53288  0.12335  3.43193     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     38   2.90962  3.53288  0.12335  3.43193     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     39   2.90962  3.53288  0.12335  3.43193     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     40   3.03462  2.56074  3.08483  0.18763     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     41   3.37101  0.13787  3.42306  2.78357     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     42   2.90962  3.53288  0.12335  3.43193     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     43   2.90962  3.53288  0.12335  3.43193     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     44   3.37101  0.13787  3.42306  2.78357     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
+     45   3.03462  2.56074  3.08483  0.18763     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01920  3.96256        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_seventeenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:39:08 2012
+NSEQ  4
+EFFN  3.292969
+CKSUM 3685436907
+STATS LOCAL MSV       -7.9887  0.71931
+STATS LOCAL VITERBI   -7.7418  0.71931
+STATS LOCAL FORWARD   -3.9482  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.80736  1.13130  1.19594  1.55647
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  0.00000        *
+      1   2.94085  3.57805  0.11823  3.48171      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      2   3.07897  2.58901  3.12749  0.18024      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      3   3.42209  0.13153  3.47201  2.82097      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      4   3.42209  0.13153  3.47201  2.82097      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      5   3.07897  2.58901  3.12749  0.18024      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      6   3.07897  2.58901  3.12749  0.18024      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      7   2.94085  3.57805  0.11823  3.48171      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      8   2.94085  3.57805  0.11823  3.48171      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      9   0.14316  3.37070  2.79571  3.27146      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     10   3.07897  2.58901  3.12749  0.18024     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     11   3.07897  2.58901  3.12749  0.18024     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     12   3.42209  0.13153  3.47201  2.82097     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     13   3.42209  0.13153  3.47201  2.82097     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     14   0.14316  3.37070  2.79571  3.27146     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     15   0.14316  3.37070  2.79571  3.27146     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     16   3.07897  2.58901  3.12749  0.18024     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     17   3.42209  0.13153  3.47201  2.82097     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     18   3.42209  0.13153  3.47201  2.82097     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     19   3.42209  0.13153  3.47201  2.82097     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     20   2.94085  3.57805  0.11823  3.48171     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     21   2.94085  3.57805  0.11823  3.48171     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     22   0.14316  3.37070  2.79571  3.27146     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     23   3.42209  0.13153  3.47201  2.82097     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     24   3.42209  0.13153  3.47201  2.82097     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     25   0.14316  3.37070  2.79571  3.27146     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     26   3.42209  0.13153  3.47201  2.82097     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     27   2.94085  3.57805  0.11823  3.48171     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     28   3.42209  0.13153  3.47201  2.82097     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     29   3.42209  0.13153  3.47201  2.82097     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     30   3.07897  2.58901  3.12749  0.18024     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     31   2.94085  3.57805  0.11823  3.48171     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     32   2.94085  3.57805  0.11823  3.48171     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     33   3.42209  0.13153  3.47201  2.82097     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     34   3.07897  2.58901  3.12749  0.18024     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     35   2.94085  3.57805  0.11823  3.48171     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     36   0.14316  3.37070  2.79571  3.27146     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     37   2.94085  3.57805  0.11823  3.48171     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     38   2.94085  3.57805  0.11823  3.48171     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     39   2.94085  3.57805  0.11823  3.48171     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     40   3.07897  2.58901  3.12749  0.18024     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     41   3.42209  0.13153  3.47201  2.82097     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     42   2.94085  3.57805  0.11823  3.48171     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     43   2.94085  3.57805  0.11823  3.48171     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     44   3.42209  0.13153  3.47201  2.82097     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     45   1.43147  1.00912  2.06421  1.31088     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01872  3.98768        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_seventeend_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:39:13 2012
+NSEQ  23
+EFFN  3.220337
+CKSUM 3706857204
+STATS LOCAL MSV       -8.1343  0.71932
+STATS LOCAL VITERBI   -7.5910  0.71932
+STATS LOCAL FORWARD   -4.0166  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93028  1.09417  1.09232  1.68936
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  0.00000        *
+      1   2.92413  3.55382  0.12094  3.45500      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+      2   3.39466  0.13489  3.44573  2.80092      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+      3   3.39466  0.13489  3.44573  2.80092      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+      4   3.39466  0.13489  3.44573  2.80092      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+      5   0.14638  3.34693  2.78022  3.24546      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+      6   3.39466  0.13489  3.44573  2.80092      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+      7   2.92413  3.55382  0.12094  3.45500      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+      8   2.92413  3.55382  0.12094  3.45500      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+      9   0.14638  3.34693  2.78022  3.24546      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     10   3.05509  2.57380  3.10452  0.18418     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     11   3.05509  2.57380  3.10452  0.18418     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     12   3.39466  0.13489  3.44573  2.80092     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     13   3.05509  2.57380  3.10452  0.18418     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     14   2.92413  3.55382  0.12094  3.45500     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     15   2.43346  1.22010  2.50389  0.62493     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     16   3.05509  2.57380  3.10452  0.18418     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     17   3.39466  0.13489  3.44573  2.80092     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     18   3.39466  0.13489  3.44573  2.80092     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     19   3.39466  0.13489  3.44573  2.80092     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     20   2.92413  3.55382  0.12094  3.45500     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     21   2.92413  3.55382  0.12094  3.45500     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     22   2.92413  3.55382  0.12094  3.45500     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     23   3.04500  0.22727  3.10593  2.19896     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     24   3.05509  2.57380  3.10452  0.18418     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     25   0.14638  3.34693  2.78022  3.24546     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     26   3.39466  0.13489  3.44573  2.80092     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     27   2.92413  3.55382  0.12094  3.45500     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     28   3.39466  0.13489  3.44573  2.80092     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     29   3.39466  0.13489  3.44573  2.80092     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     30   3.05509  2.57380  3.10452  0.18418     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     31   2.92413  3.55382  0.12094  3.45500     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     32   2.92413  3.55382  0.12094  3.45500     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     33   3.39466  0.13489  3.44573  2.80092     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     34   3.05509  2.57380  3.10452  0.18418     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     35   2.92413  3.55382  0.12094  3.45500     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     36   0.14638  3.34693  2.78022  3.24546     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     37   2.92413  3.55382  0.12094  3.45500     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     38   2.92413  3.55382  0.12094  3.45500     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     39   2.92413  3.55382  0.12094  3.45500     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     40   3.39466  0.13489  3.44573  2.80092     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     41   3.39466  0.13489  3.44573  2.80092     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     42   2.92413  3.55382  0.12094  3.45500     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     43   2.92413  3.55382  0.12094  3.45500     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     44   3.39466  0.13489  3.44573  2.80092     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     45   0.14638  3.34693  2.78022  3.24546     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01897  3.97412        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:34:38 2012
+NSEQ  7
+EFFN  4.125488
+CKSUM 1937543874
+STATS LOCAL MSV       -6.8330  0.71932
+STATS LOCAL VITERBI   -7.8147  0.71932
+STATS LOCAL FORWARD   -4.0567  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.67777  1.45561  1.28397  1.19397
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  0.00000        *
+      1   2.18378  0.82140  1.13155  2.07917      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+      2   3.09938  3.81164  0.09533  3.74056      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+      3   3.69079  0.10326  3.72867  3.01331      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+      4   0.11535  3.60610  2.94734  3.52987      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+      5   3.32274  2.74372  3.36174  0.14509      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+      6   3.32274  2.74372  3.36174  0.14509      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+      7   3.09938  3.81164  0.09533  3.74056      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+      8   1.53355  2.90664  0.40474  2.77383      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+      9   3.09938  3.81164  0.09533  3.74056      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     10   3.09938  3.81164  0.09533  3.74056     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     11   3.32274  2.74372  3.36174  0.14509     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     12   3.69079  0.10326  3.72867  3.01331     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     13   0.11535  3.60610  2.94734  3.52987     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     14   0.11535  3.60610  2.94734  3.52987     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     15   0.11535  3.60610  2.94734  3.52987     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     16   3.69079  0.10326  3.72867  3.01331     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     17   2.72481  0.47283  2.79340  1.38632     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     18   3.69079  0.10326  3.72867  3.01331     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     19   3.32274  2.74372  3.36174  0.14509     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     20   3.32274  2.74372  3.36174  0.14509     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     21   3.32274  2.74372  3.36174  0.14509     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     22   3.09938  3.81164  0.09533  3.74056     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     23   2.18378  0.82140  1.13155  2.07917     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     24   1.32958  1.10724  2.12400  1.25389     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     25   0.11535  3.60610  2.94734  3.52987     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     26   3.69079  0.10326  3.72867  3.01331     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     27   3.09938  3.81164  0.09533  3.74056     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     28   3.32274  2.74372  3.36174  0.14509     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     29   3.69079  0.10326  3.72867  3.01331     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     30   3.32274  2.74372  3.36174  0.14509     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     31   3.09938  3.81164  0.09533  3.74056     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     32   3.09938  3.81164  0.09533  3.74056     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     33   3.32274  2.74372  3.36174  0.14509     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     34   3.32274  2.74372  3.36174  0.14509     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     35   3.69079  0.10326  3.72867  3.01331     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     36   0.11535  3.60610  2.94734  3.52987     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     37   3.09938  3.81164  0.09533  3.74056     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     38   3.09938  3.81164  0.09533  3.74056     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     39   3.09938  3.81164  0.09533  3.74056     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     40   3.32274  2.74372  3.36174  0.14509     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     41   3.69079  0.10326  3.72867  3.01331     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     42   0.11535  3.60610  2.94734  3.52987     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     43   3.32274  2.74372  3.36174  0.14509     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     44   3.32274  2.74372  3.36174  0.14509     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
+     45   3.32274  2.74372  3.36174  0.14509     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01619  4.13124        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_sixteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:38:42 2012
+NSEQ  4
+EFFN  3.863281
+CKSUM 3845133886
+STATS LOCAL MSV       -7.4397  0.71932
+STATS LOCAL VITERBI   -7.7016  0.71932
+STATS LOCAL FORWARD   -4.3099  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45009  1.98350  1.27374  1.05532
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  0.00000        *
+      1   0.92184  1.01208  2.20162  2.05472      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+      2   3.25155  2.69851  3.29336  0.15449      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+      3   3.25155  2.69851  3.29336  0.15449      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+      4   3.05513  3.74598  0.10122  3.66762      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+      5   0.95536  2.21103  2.22862  0.92115      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+      6   3.25155  2.69851  3.29336  0.15449      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+      7   3.25155  2.69851  3.29336  0.15449      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+      8   3.25155  2.69851  3.29336  0.15449      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+      9   0.12263  3.53873  2.90407  3.45579      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     10   0.12263  3.53873  2.90407  3.45579     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     11   0.84088  2.60316  0.89347  2.46045     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     12   0.12263  3.53873  2.90407  3.45579     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     13   3.25155  2.69851  3.29336  0.15449     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     14   3.61457  0.11050  3.65599  2.95937     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     15   3.25155  2.69851  3.29336  0.15449     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     16   3.05513  3.74598  0.10122  3.66762     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     17   3.25155  2.69851  3.29336  0.15449     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     18   3.05513  3.74598  0.10122  3.66762     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     19   3.25155  2.69851  3.29336  0.15449     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     20   3.05513  3.74598  0.10122  3.66762     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     21   0.12263  3.53873  2.90407  3.45579     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     22   3.05513  3.74598  0.10122  3.66762     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     23   3.05513  3.74598  0.10122  3.66762     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     24   3.25155  2.69851  3.29336  0.15449     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     25   0.12263  3.53873  2.90407  3.45579     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     26   3.61457  0.11050  3.65599  2.95937     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     27   0.12263  3.53873  2.90407  3.45579     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     28   3.61457  0.11050  3.65599  2.95937     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     29   0.12263  3.53873  2.90407  3.45579     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     30   3.25155  2.69851  3.29336  0.15449     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     31   3.05513  3.74598  0.10122  3.66762     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     32   3.05513  3.74598  0.10122  3.66762     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     33   3.25155  2.69851  3.29336  0.15449     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     34   3.25155  2.69851  3.29336  0.15449     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     35   3.05513  3.74598  0.10122  3.66762     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     36   0.12263  3.53873  2.90407  3.45579     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     37   3.05513  3.74598  0.10122  3.66762     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     38   3.25155  2.69851  3.29336  0.15449     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     39   3.05513  3.74598  0.10122  3.66762     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     40   3.25155  2.69851  3.29336  0.15449     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     41   3.61457  0.11050  3.65599  2.95937     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     42   3.05513  3.74598  0.10122  3.66762     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     43   3.25155  2.69851  3.29336  0.15449     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     44   3.25155  2.69851  3.29336  0.15449     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
+     45   0.12263  3.53873  2.90407  3.45579     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01691  4.08821        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_tena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:35:44 2012
+NSEQ  4
+EFFN  3.347656
+CKSUM 1138680412
+STATS LOCAL MSV       -8.0225  0.71931
+STATS LOCAL VITERBI   -7.7367  0.71931
+STATS LOCAL FORWARD   -4.2215  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54341  1.78944  1.25102  1.09936
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  0.00000        *
+      1   0.14085  3.38823  2.80709  3.29064      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      2   3.44228  0.12912  3.49135  2.83567      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      3   3.44228  0.12912  3.49135  2.83567      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      4   0.14085  3.38823  2.80709  3.29064      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      5   0.14085  3.38823  2.80709  3.29064      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      6   3.44228  0.12912  3.49135  2.83567      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      7   0.14085  3.38823  2.80709  3.29064      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      8   2.95307  3.59583  0.11628  3.50134      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      9   2.95307  3.59583  0.11628  3.50134      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     10   3.09665  2.60026  3.14450  0.17739     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     11   3.09665  2.60026  3.14450  0.17739     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     12   3.44228  0.12912  3.49135  2.83567     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     13   0.14085  3.38823  2.80709  3.29064     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     14   3.09665  2.60026  3.14450  0.17739     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     15   0.14085  3.38823  2.80709  3.29064     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     16   3.09665  2.60026  3.14450  0.17739     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     17   3.44228  0.12912  3.49135  2.83567     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     18   3.09665  2.60026  3.14450  0.17739     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     19   2.95307  3.59583  0.11628  3.50134     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     20   3.09665  2.60026  3.14450  0.17739     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     21   3.09665  2.60026  3.14450  0.17739     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     22   2.95307  3.59583  0.11628  3.50134     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     23   2.95307  3.59583  0.11628  3.50134     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     24   3.09665  2.60026  3.14450  0.17739     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     25   0.14085  3.38823  2.80709  3.29064     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     26   3.09665  2.60026  3.14450  0.17739     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     27   2.95307  3.59583  0.11628  3.50134     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     28   3.09665  2.60026  3.14450  0.17739     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     29   3.09665  2.60026  3.14450  0.17739     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     30   3.09665  2.60026  3.14450  0.17739     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     31   2.95307  3.59583  0.11628  3.50134     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     32   2.95307  3.59583  0.11628  3.50134     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     33   3.09665  2.60026  3.14450  0.17739     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     34   3.09665  2.60026  3.14450  0.17739     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     35   2.95307  3.59583  0.11628  3.50134     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     36   0.14085  3.38823  2.80709  3.29064     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     37   2.95307  3.59583  0.11628  3.50134     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     38   2.95307  3.59583  0.11628  3.50134     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     39   2.95307  3.59583  0.11628  3.50134     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     40   3.09665  2.60026  3.14450  0.17739     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     41   3.44228  0.12912  3.49135  2.83567     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     42   2.95307  3.59583  0.11628  3.50134     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     43   0.14085  3.38823  2.80709  3.29064     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     44   3.09665  2.60026  3.14450  0.17739     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     45   3.09665  2.60026  3.14450  0.17739     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01853  3.99777        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_tenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:35:50 2012
+NSEQ  15
+EFFN  3.541260
+CKSUM 743970875
+STATS LOCAL MSV       -7.2652  0.71932
+STATS LOCAL VITERBI   -7.7504  0.71932
+STATS LOCAL FORWARD   -4.0818  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47399  1.99837  1.30389  1.01071
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  0.00000        *
+      1   0.13330  3.44776  2.84559  3.35589      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+      2   3.51070  0.12132  3.55681  2.88515      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+      3   3.15726  2.63874  3.20277  0.16800      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+      4   0.13330  3.44776  2.84559  3.35589      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+      5   3.15726  2.63874  3.20277  0.16800      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+      6   3.51070  0.12132  3.55681  2.88515      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+      7   0.25186  3.06981  2.08699  2.95350      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+      8   2.99404  3.65578  0.10998  3.56762      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+      9   2.99404  3.65578  0.10998  3.56762      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     10   3.15726  2.63874  3.20277  0.16800     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     11   3.15726  2.63874  3.20277  0.16800     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     12   3.15726  2.63874  3.20277  0.16800     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     13   0.13330  3.44776  2.84559  3.35589     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     14   3.15726  2.63874  3.20277  0.16800     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     15   0.13330  3.44776  2.84559  3.35589     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     16   3.15726  2.63874  3.20277  0.16800     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     17   3.51070  0.12132  3.55681  2.88515     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     18   3.15726  2.63874  3.20277  0.16800     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     19   2.99404  3.65578  0.10998  3.56762     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     20   0.13330  3.44776  2.84559  3.35589     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     21   3.15726  2.63874  3.20277  0.16800     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     22   0.13330  3.44776  2.84559  3.35589     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     23   2.99404  3.65578  0.10998  3.56762     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     24   3.15726  2.63874  3.20277  0.16800     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     25   0.13330  3.44776  2.84559  3.35589     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     26   3.15726  2.63874  3.20277  0.16800     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     27   2.99404  3.65578  0.10998  3.56762     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     28   3.15726  2.63874  3.20277  0.16800     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     29   3.15726  2.63874  3.20277  0.16800     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     30   3.15726  2.63874  3.20277  0.16800     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     31   2.99404  3.65578  0.10998  3.56762     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     32   2.99404  3.65578  0.10998  3.56762     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     33   3.15726  2.63874  3.20277  0.16800     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     34   3.15726  2.63874  3.20277  0.16800     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     35   2.99404  3.65578  0.10998  3.56762     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     36   0.13330  3.44776  2.84559  3.35589     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     37   2.99404  3.65578  0.10998  3.56762     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     38   2.99404  3.65578  0.10998  3.56762     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     39   2.99404  3.65578  0.10998  3.56762     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     40   3.15726  2.63874  3.20277  0.16800     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     41   3.51070  0.12132  3.55681  2.88515     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     42   2.99404  3.65578  0.10998  3.56762     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     43   0.13330  3.44776  2.84559  3.35589     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     44   2.63026  1.53163  2.69540  0.43968     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
+     45   3.15726  2.63874  3.20277  0.16800     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01789  4.03269        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_tenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:35:57 2012
+NSEQ  27
+EFFN  3.477173
+CKSUM 145315044
+STATS LOCAL MSV       -7.2100  0.71931
+STATS LOCAL VITERBI   -7.8054  0.71931
+STATS LOCAL FORWARD   -4.0473  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.53836  2.01048  1.31044  0.96328
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  0.00000        *
+      1   0.13569  3.42847  2.83315  3.33474      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+      2   3.48857  0.12378  3.53565  2.86920      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+      3   3.13754  2.62622  3.18381  0.17099      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+      4   0.13569  3.42847  2.83315  3.33474      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+      5   2.27052  2.44039  2.75948  0.29264      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+      6   3.48857  0.12378  3.53565  2.86920      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+      7   0.13569  3.42847  2.83315  3.33474      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+      8   2.98086  3.63644  0.11197  3.54622      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+      9   2.98086  3.63644  0.11197  3.54622      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     10   3.13754  2.62622  3.18381  0.17099     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     11   3.13754  2.62622  3.18381  0.17099     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     12   3.13754  2.62622  3.18381  0.17099     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     13   0.13569  3.42847  2.83315  3.33474     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     14   3.13754  2.62622  3.18381  0.17099     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     15   0.13569  3.42847  2.83315  3.33474     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     16   3.13754  2.62622  3.18381  0.17099     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     17   3.48857  0.12378  3.53565  2.86920     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     18   3.13754  2.62622  3.18381  0.17099     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     19   2.98086  3.63644  0.11197  3.54622     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     20   3.13754  2.62622  3.18381  0.17099     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     21   3.13754  2.62622  3.18381  0.17099     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     22   0.13569  3.42847  2.83315  3.33474     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     23   2.98086  3.63644  0.11197  3.54622     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     24   3.13754  2.62622  3.18381  0.17099     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     25   0.13569  3.42847  2.83315  3.33474     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     26   3.13754  2.62622  3.18381  0.17099     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     27   2.98086  3.63644  0.11197  3.54622     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     28   3.13754  2.62622  3.18381  0.17099     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     29   3.13754  2.62622  3.18381  0.17099     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     30   3.13754  2.62622  3.18381  0.17099     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     31   2.98086  3.63644  0.11197  3.54622     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     32   2.98086  3.63644  0.11197  3.54622     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     33   3.13754  2.62622  3.18381  0.17099     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     34   3.13754  2.62622  3.18381  0.17099     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     35   2.98086  3.63644  0.11197  3.54622     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     36   0.13569  3.42847  2.83315  3.33474     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     37   2.98086  3.63644  0.11197  3.54622     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     38   2.98086  3.63644  0.11197  3.54622     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     39   2.98086  3.63644  0.11197  3.54622     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     40   3.13754  2.62622  3.18381  0.17099     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     41   3.48857  0.12378  3.53565  2.86920     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     42   2.98086  3.63644  0.11197  3.54622     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     43   0.13569  3.42847  2.83315  3.33474     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     44   3.13754  2.62622  3.18381  0.17099     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
+     45   3.13754  2.62622  3.18381  0.17099     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01809  4.02127        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_tend_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:36:03 2012
+NSEQ  4
+EFFN  3.707031
+CKSUM 223107628
+STATS LOCAL MSV       -7.3709  0.71933
+STATS LOCAL VITERBI   -7.6109  0.71933
+STATS LOCAL FORWARD   -4.0357  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.32217  2.06016  1.44176  0.99561
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  0.00000        *
+      1   0.12754  3.49579  2.87650  3.40860      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+      2   3.56566  0.11545  3.60931  2.92454      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+      3   3.20678  2.67013  3.25036  0.16074      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+      4   0.12754  3.49579  2.87650  3.40860      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+      5   0.12754  3.49579  2.87650  3.40860      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+      6   3.56566  0.11545  3.60931  2.92454      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+      7   0.12754  3.49579  2.87650  3.40860      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+      8   3.02650  3.70362  0.10523  3.62062      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+      9   3.02650  3.70362  0.10523  3.62062      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     10   3.20678  2.67013  3.25036  0.16074     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     11   3.20678  2.67013  3.25036  0.16074     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     12   3.20678  2.67013  3.25036  0.16074     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     13   0.12754  3.49579  2.87650  3.40860     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     14   3.20678  2.67013  3.25036  0.16074     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     15   0.12754  3.49579  2.87650  3.40860     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     16   3.20678  2.67013  3.25036  0.16074     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     17   3.56566  0.11545  3.60931  2.92454     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     18   3.20678  2.67013  3.25036  0.16074     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     19   3.02650  3.70362  0.10523  3.62062     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     20   3.20678  2.67013  3.25036  0.16074     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     21   3.20678  2.67013  3.25036  0.16074     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     22   0.12754  3.49579  2.87650  3.40860     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     23   3.02650  3.70362  0.10523  3.62062     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     24   3.20678  2.67013  3.25036  0.16074     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     25   0.12754  3.49579  2.87650  3.40860     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     26   2.47317  0.94581  2.54437  0.80119     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     27   3.02650  3.70362  0.10523  3.62062     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     28   3.20678  2.67013  3.25036  0.16074     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     29   3.20678  2.67013  3.25036  0.16074     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     30   3.20678  2.67013  3.25036  0.16074     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     31   0.12754  3.49579  2.87650  3.40860     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     32   0.12754  3.49579  2.87650  3.40860     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     33   3.20678  2.67013  3.25036  0.16074     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     34   3.20678  2.67013  3.25036  0.16074     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     35   3.02650  3.70362  0.10523  3.62062     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     36   0.12754  3.49579  2.87650  3.40860     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     37   3.02650  3.70362  0.10523  3.62062     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     38   3.02650  3.70362  0.10523  3.62062     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     39   3.02650  3.70362  0.10523  3.62062     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     40   3.20678  2.67013  3.25036  0.16074     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     41   2.47317  0.94581  2.54437  0.80119     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     42   3.02650  3.70362  0.10523  3.62062     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     43   0.12754  3.49579  2.87650  3.40860     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     44   3.20678  2.67013  3.25036  0.16074     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
+     45   3.20678  2.67013  3.25036  0.16074     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01737  4.06165        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_tene_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:36:09 2012
+NSEQ  5
+EFFN  3.735352
+CKSUM 1997058217
+STATS LOCAL MSV       -7.2306  0.71932
+STATS LOCAL VITERBI   -7.6111  0.71932
+STATS LOCAL FORWARD   -4.0332  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.49987  1.83225  1.50630  0.92873
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  0.00000        *
+      1   0.12662  3.50373  2.88160  3.41733      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+      2   3.57473  0.11452  3.61797  2.93101      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+      3   3.21503  2.67536  3.25828  0.15957      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+      4   0.61319  2.63365  1.19099  2.49325      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+      5   0.12662  3.50373  2.88160  3.41733      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+      6   3.57473  0.11452  3.61797  2.93101      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+      7   0.12662  3.50373  2.88160  3.41733      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+      8   3.03183  3.71149  0.10447  3.62935      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+      9   3.03183  3.71149  0.10447  3.62935      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     10   3.21503  2.67536  3.25828  0.15957     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     11   3.21503  2.67536  3.25828  0.15957     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     12   3.21503  2.67536  3.25828  0.15957     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     13   2.50744  0.71426  2.57900  1.04094     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     14   3.21503  2.67536  3.25828  0.15957     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     15   0.12662  3.50373  2.88160  3.41733     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     16   3.21503  2.67536  3.25828  0.15957     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     17   3.57473  0.11452  3.61797  2.93101     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     18   3.21503  2.67536  3.25828  0.15957     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     19   3.03183  3.71149  0.10447  3.62935     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     20   3.21503  2.67536  3.25828  0.15957     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     21   3.21503  2.67536  3.25828  0.15957     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     22   0.12662  3.50373  2.88160  3.41733     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     23   3.03183  3.71149  0.10447  3.62935     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     24   3.21503  2.67536  3.25828  0.15957     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     25   0.12662  3.50373  2.88160  3.41733     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     26   3.21503  2.67536  3.25828  0.15957     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     27   3.03183  3.71149  0.10447  3.62935     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     28   3.21503  2.67536  3.25828  0.15957     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     29   3.21503  2.67536  3.25828  0.15957     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     30   3.57473  0.11452  3.61797  2.93101     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     31   0.12662  3.50373  2.88160  3.41733     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     32   0.12662  3.50373  2.88160  3.41733     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     33   3.21503  2.67536  3.25828  0.15957     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     34   3.21503  2.67536  3.25828  0.15957     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     35   3.03183  3.71149  0.10447  3.62935     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     36   0.12662  3.50373  2.88160  3.41733     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     37   3.03183  3.71149  0.10447  3.62935     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     38   3.03183  3.71149  0.10447  3.62935     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     39   3.03183  3.71149  0.10447  3.62935     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     40   3.21503  2.67536  3.25828  0.15957     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     41   3.57473  0.11452  3.61797  2.93101     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     42   3.21503  2.67536  3.25828  0.15957     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     43   3.21503  2.67536  3.25828  0.15957     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     44   3.21503  2.67536  3.25828  0.15957     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
+     45   3.21503  2.67536  3.25828  0.15957     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01729  4.06652        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_tenf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:36:14 2012
+NSEQ  9
+EFFN  3.388184
+CKSUM 3584086150
+STATS LOCAL MSV       -7.3202  0.71932
+STATS LOCAL VITERBI   -7.7155  0.71932
+STATS LOCAL FORWARD   -3.9805  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47116  1.78523  1.37718  1.04898
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  0.00000        *
+      1   2.96194  3.60876  0.11489  3.51562      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+      2   3.45700  0.12739  3.50544  2.84636      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+      3   0.13919  3.40101  2.81538  3.30464      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+      4   3.45700  0.12739  3.50544  2.84636      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+      5   3.10960  2.60848  3.15695  0.17533      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+      6   0.13919  3.40101  2.81538  3.30464      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+      7   0.13919  3.40101  2.81538  3.30464      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+      8   3.45700  0.12739  3.50544  2.84636      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+      9   0.13919  3.40101  2.81538  3.30464      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     10   2.96194  3.60876  0.11489  3.51562     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     11   2.96194  3.60876  0.11489  3.51562     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     12   2.96194  3.60876  0.11489  3.51562     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     13   3.10960  2.60848  3.15695  0.17533     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     14   3.10960  2.60848  3.15695  0.17533     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     15   0.13919  3.40101  2.81538  3.30464     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     16   3.10960  2.60848  3.15695  0.17533     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     17   3.45700  0.12739  3.50544  2.84636     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     18   3.10960  2.60848  3.15695  0.17533     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     19   2.96194  3.60876  0.11489  3.51562     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     20   3.10960  2.60848  3.15695  0.17533     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     21   3.10960  2.60848  3.15695  0.17533     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     22   0.13919  3.40101  2.81538  3.30464     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     23   2.96194  3.60876  0.11489  3.51562     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     24   3.10960  2.60848  3.15695  0.17533     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     25   0.13919  3.40101  2.81538  3.30464     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     26   3.10960  2.60848  3.15695  0.17533     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     27   2.96194  3.60876  0.11489  3.51562     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     28   3.10960  2.60848  3.15695  0.17533     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     29   3.10960  2.60848  3.15695  0.17533     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     30   3.45700  0.12739  3.50544  2.84636     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     31   0.13919  3.40101  2.81538  3.30464     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     32   0.13919  3.40101  2.81538  3.30464     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     33   3.10960  2.60848  3.15695  0.17533     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     34   3.10960  2.60848  3.15695  0.17533     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     35   2.96194  3.60876  0.11489  3.51562     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     36   0.13919  3.40101  2.81538  3.30464     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     37   2.96194  3.60876  0.11489  3.51562     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     38   2.96194  3.60876  0.11489  3.51562     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     39   2.96194  3.60876  0.11489  3.51562     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     40   3.10960  2.60848  3.15695  0.17533     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     41   3.45700  0.12739  3.50544  2.84636     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     42   3.10960  2.60848  3.15695  0.17533     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     43   3.10960  2.60848  3.15695  0.17533     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     44   3.10960  2.60848  3.15695  0.17533     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
+     45   3.10960  2.60848  3.15695  0.17533     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01839  4.00518        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_teng_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:36:22 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3663368387
+STATS LOCAL MSV       -7.3488  0.72876
+STATS LOCAL VITERBI   -8.2888  0.72876
+STATS LOCAL FORWARD   -3.6395  0.72876
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.38983  1.64273  1.43124  1.14439
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_thirteena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:38:02 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2336979512
+STATS LOCAL MSV       -7.9801  0.72066
+STATS LOCAL VITERBI   -7.8245  0.72066
+STATS LOCAL FORWARD   -3.9046  0.72066
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.32957  2.00957  1.24643  1.15889
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
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+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_thirteenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:38:12 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2866047971
+STATS LOCAL MSV       -8.0194  0.72073
+STATS LOCAL VITERBI   -7.8566  0.72073
+STATS LOCAL FORWARD   -3.9487  0.72073
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39363  2.00317  1.24770  1.10940
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   3.30705  0.14631  3.36166  2.73626     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   0.15719  3.27118  2.73043  3.16274     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.86982  3.47591  0.13017  3.36931     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.97980  2.52563  3.03204  0.19727     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_thirty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:43:16 2012
+NSEQ  7
+EFFN  3.277832
+CKSUM 3385757595
+STATS LOCAL MSV       -8.0891  0.71932
+STATS LOCAL VITERBI   -7.6678  0.71932
+STATS LOCAL FORWARD   -3.7375  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72215  1.52760  1.19403  1.19976
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  0.00000        *
+      1   2.93741  3.57306  0.11878  3.47620      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+      2   2.93741  3.57306  0.11878  3.47620      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+      3   3.41643  0.13221  3.46659  2.81684      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+      4   3.07403  2.58586  3.12274  0.18104      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+      5   3.07403  2.58586  3.12274  0.18104      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+      6   3.07403  2.58586  3.12274  0.18104      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+      7   3.41643  0.13221  3.46659  2.81684      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+      8   2.93741  3.57306  0.11878  3.47620      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+      9   2.93741  3.57306  0.11878  3.47620      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     10   2.93741  3.57306  0.11878  3.47620     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     11   3.07403  2.58586  3.12274  0.18104     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     12   3.41643  0.13221  3.46659  2.81684     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     13   3.07403  2.58586  3.12274  0.18104     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     14   3.07403  2.58586  3.12274  0.18104     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     15   3.07403  2.58586  3.12274  0.18104     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     16   3.07403  2.58586  3.12274  0.18104     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     17   3.41643  0.13221  3.46659  2.81684     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     18   3.41643  0.13221  3.46659  2.81684     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     19   2.93741  3.57306  0.11878  3.47620     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     20   0.14382  3.36580  2.79252  3.26609     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     21   2.93741  3.57306  0.11878  3.47620     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     22   2.93741  3.57306  0.11878  3.47620     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     23   3.07403  2.58586  3.12274  0.18104     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     24   3.41643  0.13221  3.46659  2.81684     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     25   0.14382  3.36580  2.79252  3.26609     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     26   3.41643  0.13221  3.46659  2.81684     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     27   0.14382  3.36580  2.79252  3.26609     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     28   3.07403  2.58586  3.12274  0.18104     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     29   3.41643  0.13221  3.46659  2.81684     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     30   3.07403  2.58586  3.12274  0.18104     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     31   2.93741  3.57306  0.11878  3.47620     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     32   3.07403  2.58586  3.12274  0.18104     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     33   3.41643  0.13221  3.46659  2.81684     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     34   3.07403  2.58586  3.12274  0.18104     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     35   2.93741  3.57306  0.11878  3.47620     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     36   0.14382  3.36580  2.79252  3.26609     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     37   2.93741  3.57306  0.11878  3.47620     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     38   0.14382  3.36580  2.79252  3.26609     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     39   2.93741  3.57306  0.11878  3.47620     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     40   3.07403  2.58586  3.12274  0.18104     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     41   3.07403  2.58586  3.12274  0.18104     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     42   2.93741  3.57306  0.11878  3.47620     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     43   0.14382  3.36580  2.79252  3.26609     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     44   2.93741  3.57306  0.11878  3.47620     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
+     45   0.14382  3.36580  2.79252  3.26609     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01877  3.98487        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_thirtyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:44:30 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3283497841
+STATS LOCAL MSV       -8.1429  0.72002
+STATS LOCAL VITERBI   -7.6801  0.72002
+STATS LOCAL FORWARD   -4.0384  0.72002
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72213  1.15515  1.25962  1.50263
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.97980  2.52563  3.03204  0.19727     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.86982  3.47591  0.13017  3.36931     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   3.30705  0.14631  3.36166  2.73626     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   0.15719  3.27118  2.73043  3.16274     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   3.30705  0.14631  3.36166  2.73626     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_thirtyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:44:02 2012
+NSEQ  6
+EFFN  3.606445
+CKSUM 1494175732
+STATS LOCAL MSV       -7.4761  0.71932
+STATS LOCAL VITERBI   -7.7902  0.71932
+STATS LOCAL FORWARD   -4.1870  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.89462  1.54545  1.24685  1.05268
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  0.00000        *
+      1   3.00708  3.67496  0.10805  3.58886      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+      2   3.53270  0.11893  3.57783  2.90095      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+      3   3.00708  3.67496  0.10805  3.58886      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+      4   3.53270  0.11893  3.57783  2.90095      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+      5   3.17699  2.65124  3.22173  0.16506      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+      6   3.00708  3.67496  0.10805  3.58886      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+      7   3.17699  2.65124  3.22173  0.16506      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+      8   3.17699  2.65124  3.22173  0.16506      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+      9   0.13096  3.46696  2.85796  3.37696      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     10   3.00708  3.67496  0.10805  3.58886     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     11   3.00708  3.67496  0.10805  3.58886     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     12   0.95902  2.17958  2.19512  0.93573     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     13   3.17699  2.65124  3.22173  0.16506     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     14   3.17699  2.65124  3.22173  0.16506     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     15   3.17699  2.65124  3.22173  0.16506     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     16   3.53270  0.11893  3.57783  2.90095     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     17   2.55182  0.58439  2.62299  1.23090     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     18   3.17699  2.65124  3.22173  0.16506     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     19   0.13096  3.46696  2.85796  3.37696     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     20   3.00708  3.67496  0.10805  3.58886     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     21   3.53270  0.11893  3.57783  2.90095     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     22   0.13096  3.46696  2.85796  3.37696     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     23   3.00708  3.67496  0.10805  3.58886     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     24   3.53270  0.11893  3.57783  2.90095     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     25   0.13096  3.46696  2.85796  3.37696     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     26   3.17699  2.65124  3.22173  0.16506     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     27   3.00708  3.67496  0.10805  3.58886     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     28   3.17699  2.65124  3.22173  0.16506     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     29   3.53270  0.11893  3.57783  2.90095     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     30   3.17699  2.65124  3.22173  0.16506     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     31   3.00708  3.67496  0.10805  3.58886     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     32   3.17699  2.65124  3.22173  0.16506     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     33   3.53270  0.11893  3.57783  2.90095     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     34   3.17699  2.65124  3.22173  0.16506     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     35   3.00708  3.67496  0.10805  3.58886     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     36   0.13096  3.46696  2.85796  3.37696     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     37   3.00708  3.67496  0.10805  3.58886     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     38   3.17699  2.65124  3.22173  0.16506     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     39   3.00708  3.67496  0.10805  3.58886     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     40   3.17699  2.65124  3.22173  0.16506     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     41   3.53270  0.11893  3.57783  2.90095     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     42   3.00708  3.67496  0.10805  3.58886     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     43   3.17699  2.65124  3.22173  0.16506     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     44   3.17699  2.65124  3.22173  0.16506     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
+     45   3.17699  2.65124  3.22173  0.16506     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01768  4.04418        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_thirtyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:43:54 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1862354267
+STATS LOCAL MSV       -7.4990  0.72818
+STATS LOCAL VITERBI   -8.2013  0.72818
+STATS LOCAL FORWARD   -3.6550  0.72818
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82028  1.51089  1.16534  1.18585
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_thirtyninea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:44:41 2012
+NSEQ  12
+EFFN  3.436523
+CKSUM 1305076398
+STATS LOCAL MSV       -7.4447  0.71933
+STATS LOCAL VITERBI   -7.6590  0.71933
+STATS LOCAL FORWARD   -4.0283  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.90049  1.11875  1.13599  1.59597
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  0.00000        *
+      1   2.97231  3.62392  0.11328  3.53237      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      2   3.47427  0.12540  3.52197  2.85887      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      3   2.97231  3.62392  0.11328  3.53237      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      4   3.47427  0.12540  3.52197  2.85887      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      5   3.12486  2.61817  3.17162  0.17294      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      6   3.47427  0.12540  3.52197  2.85887      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      7   2.97231  3.62392  0.11328  3.53237      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      8   3.12486  2.61817  3.17162  0.17294      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+      9   3.47427  0.12540  3.52197  2.85887      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     10   3.12486  2.61817  3.17162  0.17294     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     11   3.47427  0.12540  3.52197  2.85887     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     12   3.12486  2.61817  3.17162  0.17294     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     13   2.45737  1.15240  2.52778  0.65657     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     14   2.97231  3.62392  0.11328  3.53237     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     15   3.47427  0.12540  3.52197  2.85887     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     16   2.97231  3.62392  0.11328  3.53237     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     17   0.13726  3.41603  2.82510  3.32110     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     18   2.97231  3.62392  0.11328  3.53237     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     19   2.97231  3.62392  0.11328  3.53237     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     20   3.47427  0.12540  3.52197  2.85887     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     21   2.97231  3.62392  0.11328  3.53237     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     22   0.13726  3.41603  2.82510  3.32110     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     23   2.97231  3.62392  0.11328  3.53237     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     24   3.47427  0.12540  3.52197  2.85887     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     25   0.13726  3.41603  2.82510  3.32110     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     26   0.13726  3.41603  2.82510  3.32110     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     27   2.97231  3.62392  0.11328  3.53237     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     28   2.97231  3.62392  0.11328  3.53237     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     29   3.47427  0.12540  3.52197  2.85887     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     30   3.12486  2.61817  3.17162  0.17294     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     31   2.97231  3.62392  0.11328  3.53237     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     32   3.12486  2.61817  3.17162  0.17294     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     33   3.47427  0.12540  3.52197  2.85887     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     34   3.47427  0.12540  3.52197  2.85887     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     35   2.97231  3.62392  0.11328  3.53237     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     36   0.13726  3.41603  2.82510  3.32110     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     37   2.97231  3.62392  0.11328  3.53237     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     38   3.47427  0.12540  3.52197  2.85887     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     39   2.97231  3.62392  0.11328  3.53237     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     40   3.12486  2.61817  3.17162  0.17294     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     41   3.47427  0.12540  3.52197  2.85887     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     42   3.47427  0.12540  3.52197  2.85887     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     43   1.11860  0.85853  2.17412  1.99678     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     44   3.12486  2.61817  3.17162  0.17294     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
+     45   2.86793  0.31108  2.93325  1.84958     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01823  4.01395        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_thirtynineb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:44:48 2012
+NSEQ  4
+EFFN  3.113281
+CKSUM 2440900297
+STATS LOCAL MSV       -7.9878  0.71931
+STATS LOCAL VITERBI   -7.8835  0.71931
+STATS LOCAL FORWARD   -3.7817  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92771  1.21126  1.04606  1.58291
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  0.00000        *
+      1   3.35293  0.14020  3.40571  2.77025      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+      2   2.89845  3.51682  0.12523  3.41426      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+      3   3.35293  0.14020  3.40571  2.77025      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+      4   3.01905  2.55078  3.06983  0.19031      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+      5   3.35293  0.14020  3.40571  2.77025      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+      6   2.89845  3.51682  0.12523  3.41426      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+      7   3.01905  2.55078  3.06983  0.19031      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+      8   3.35293  0.14020  3.40571  2.77025      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+      9   2.89845  3.51682  0.12523  3.41426      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     10   3.35293  0.14020  3.40571  2.77025     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     11   3.01905  2.55078  3.06983  0.19031     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     12   3.01905  2.55078  3.06983  0.19031     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     13   3.35293  0.14020  3.40571  2.77025     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     14   2.89845  3.51682  0.12523  3.41426     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     15   0.15142  3.31082  2.75657  3.20600     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     16   2.89845  3.51682  0.12523  3.41426     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     17   3.35293  0.14020  3.40571  2.77025     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     18   2.89845  3.51682  0.12523  3.41426     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     19   2.89845  3.51682  0.12523  3.41426     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     20   3.35293  0.14020  3.40571  2.77025     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     21   2.89845  3.51682  0.12523  3.41426     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     22   0.15142  3.31082  2.75657  3.20600     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     23   2.89845  3.51682  0.12523  3.41426     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     24   3.35293  0.14020  3.40571  2.77025     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     25   0.15142  3.31082  2.75657  3.20600     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     26   3.01905  2.55078  3.06983  0.19031     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     27   2.89845  3.51682  0.12523  3.41426     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     28   2.89845  3.51682  0.12523  3.41426     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     29   3.35293  0.14020  3.40571  2.77025     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     30   3.35293  0.14020  3.40571  2.77025     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     31   2.89845  3.51682  0.12523  3.41426     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     32   2.89845  3.51682  0.12523  3.41426     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     33   3.01905  2.55078  3.06983  0.19031     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     34   3.35293  0.14020  3.40571  2.77025     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     35   2.89845  3.51682  0.12523  3.41426     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     36   0.15142  3.31082  2.75657  3.20600     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     37   2.89845  3.51682  0.12523  3.41426     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     38   0.15142  3.31082  2.75657  3.20600     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     39   2.89845  3.51682  0.12523  3.41426     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     40   3.01905  2.55078  3.06983  0.19031     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     41   3.35293  0.14020  3.40571  2.77025     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     42   3.35293  0.14020  3.40571  2.77025     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     43   2.89845  3.51682  0.12523  3.41426     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     44   3.01905  2.55078  3.06983  0.19031     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
+     45   3.01905  2.55078  3.06983  0.19031     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01937  3.95379        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_thirtyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:43:29 2012
+NSEQ  30
+EFFN  3.629150
+CKSUM 1546314626
+STATS LOCAL MSV       -7.4451  0.71931
+STATS LOCAL VITERBI   -7.9191  0.71931
+STATS LOCAL FORWARD   -4.0575  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.27612  1.35205  1.13329  1.15000
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  0.00000        *
+      1   3.01153  3.68153  0.10740  3.59614      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+      2   3.54024  0.11813  3.58504  2.90636      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+      3   3.01153  3.68153  0.10740  3.59614      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+      4   3.54024  0.11813  3.58504  2.90636      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+      5   3.54024  0.11813  3.58504  2.90636      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+      6   3.01153  3.68153  0.10740  3.59614      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+      7   3.18379  2.65555  3.22826  0.16407      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+      8   3.18379  2.65555  3.22826  0.16407      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+      9   3.01153  3.68153  0.10740  3.59614      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     10   3.01153  3.68153  0.10740  3.59614     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     11   3.01153  3.68153  0.10740  3.59614     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     12   3.18379  2.65555  3.22826  0.16407     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     13   3.18379  2.65555  3.22826  0.16407     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     14   3.18379  2.65555  3.22826  0.16407     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     15   2.99319  2.20646  3.04534  0.23294     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     16   3.54024  0.11813  3.58504  2.90636     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     17   3.54024  0.11813  3.58504  2.90636     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     18   3.54024  0.11813  3.58504  2.90636     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     19   3.18379  2.65555  3.22826  0.16407     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     20   3.18379  2.65555  3.22826  0.16407     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     21   3.54024  0.11813  3.58504  2.90636     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     22   3.01153  3.68153  0.10740  3.59614     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     23   3.01153  3.68153  0.10740  3.59614     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     24   3.54024  0.11813  3.58504  2.90636     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     25   0.13017  3.47355  2.86220  3.38419     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     26   3.54024  0.11813  3.58504  2.90636     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     27   3.01153  3.68153  0.10740  3.59614     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     28   3.18379  2.65555  3.22826  0.16407     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     29   3.54024  0.11813  3.58504  2.90636     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     30   3.18379  2.65555  3.22826  0.16407     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     31   3.01153  3.68153  0.10740  3.59614     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     32   3.01153  3.68153  0.10740  3.59614     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     33   2.65178  1.53552  2.71648  0.43383     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     34   3.18379  2.65555  3.22826  0.16407     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     35   3.54024  0.11813  3.58504  2.90636     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     36   0.13017  3.47355  2.86220  3.38419     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     37   3.01153  3.68153  0.10740  3.59614     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     38   3.01153  3.68153  0.10740  3.59614     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     39   3.01153  3.68153  0.10740  3.59614     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     40   3.18379  2.65555  3.22826  0.16407     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     41   3.18379  2.65555  3.22826  0.16407     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     42   3.01153  3.68153  0.10740  3.59614     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     43   3.18379  2.65555  3.22826  0.16407     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     44   1.66647  2.28859  2.45050  0.47252     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
+     45   0.77729  2.22981  2.20691  1.13084     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01761  4.04815        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_thirtyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:44:20 2012
+NSEQ  4
+EFFN  3.277344
+CKSUM 3008892434
+STATS LOCAL MSV       -8.0837  0.71933
+STATS LOCAL VITERBI   -7.8221  0.71933
+STATS LOCAL FORWARD   -4.2716  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47281  1.61226  1.25134  1.25470
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  0.00000        *
+      1   3.41625  0.13224  3.46642  2.81671      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      2   3.07387  2.58576  3.12259  0.18107      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      3   3.07387  2.58576  3.12259  0.18107      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      4   3.07387  2.58576  3.12259  0.18107      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      5   2.93730  3.57289  0.11880  3.47603      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      6   2.93730  3.57289  0.11880  3.47603      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      7   3.07387  2.58576  3.12259  0.18107      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      8   3.07387  2.58576  3.12259  0.18107      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      9   0.14384  3.36564  2.79241  3.26592      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     10   2.93730  3.57289  0.11880  3.47603     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     11   3.41625  0.13224  3.46642  2.81671     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     12   0.14384  3.36564  2.79241  3.26592     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     13   0.14384  3.36564  2.79241  3.26592     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     14   3.07387  2.58576  3.12259  0.18107     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     15   0.14384  3.36564  2.79241  3.26592     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     16   0.14384  3.36564  2.79241  3.26592     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     17   3.41625  0.13224  3.46642  2.81671     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     18   3.07387  2.58576  3.12259  0.18107     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     19   0.14384  3.36564  2.79241  3.26592     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     20   2.93730  3.57289  0.11880  3.47603     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     21   0.14384  3.36564  2.79241  3.26592     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     22   2.93730  3.57289  0.11880  3.47603     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     23   3.41625  0.13224  3.46642  2.81671     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     24   3.41625  0.13224  3.46642  2.81671     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     25   3.07387  2.58576  3.12259  0.18107     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     26   3.07387  2.58576  3.12259  0.18107     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     27   2.93730  3.57289  0.11880  3.47603     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     28   3.41625  0.13224  3.46642  2.81671     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     29   3.41625  0.13224  3.46642  2.81671     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     30   3.07387  2.58576  3.12259  0.18107     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     31   2.93730  3.57289  0.11880  3.47603     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     32   3.07387  2.58576  3.12259  0.18107     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     33   0.14384  3.36564  2.79241  3.26592     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     34   3.07387  2.58576  3.12259  0.18107     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     35   2.93730  3.57289  0.11880  3.47603     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     36   0.14384  3.36564  2.79241  3.26592     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     37   2.93730  3.57289  0.11880  3.47603     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     38   2.93730  3.57289  0.11880  3.47603     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     39   2.93730  3.57289  0.11880  3.47603     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     40   3.07387  2.58576  3.12259  0.18107     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     41   3.41625  0.13224  3.46642  2.81671     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     42   2.93730  3.57289  0.11880  3.47603     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     43   2.93730  3.57289  0.11880  3.47603     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     44   0.14384  3.36564  2.79241  3.26592     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     45   3.07387  2.58576  3.12259  0.18107     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01877  3.98478        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_thirtysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:44:13 2012
+NSEQ  4
+EFFN  3.386719
+CKSUM 43523732
+STATS LOCAL MSV       -7.1538  0.71932
+STATS LOCAL VITERBI   -7.5801  0.71932
+STATS LOCAL FORWARD   -4.0824  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.46898  1.58365  1.24528  1.28462
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  0.00000        *
+      1   2.96162  3.60830  0.11494  3.51511      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      2   2.96162  3.60830  0.11494  3.51511      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      3   3.45647  0.12746  3.50493  2.84597      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      4   0.13925  3.40055  2.81508  3.30414      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      5   3.45647  0.12746  3.50493  2.84597      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      6   3.45647  0.12746  3.50493  2.84597      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      7   3.10913  2.60819  3.15650  0.17540      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      8   0.13925  3.40055  2.81508  3.30414      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      9   3.10913  2.60819  3.15650  0.17540      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     10   2.96162  3.60830  0.11494  3.51511     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     11   0.13925  3.40055  2.81508  3.30414     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     12   3.10913  2.60819  3.15650  0.17540     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     13   0.13925  3.40055  2.81508  3.30414     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     14   0.13925  3.40055  2.81508  3.30414     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     15   3.45647  0.12746  3.50493  2.84597     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     16   3.45647  0.12746  3.50493  2.84597     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     17   3.10913  2.60819  3.15650  0.17540     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     18   3.45647  0.12746  3.50493  2.84597     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     19   0.13925  3.40055  2.81508  3.30414     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     20   3.10913  2.60819  3.15650  0.17540     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     21   2.96162  3.60830  0.11494  3.51511     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     22   2.96162  3.60830  0.11494  3.51511     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     23   2.96162  3.60830  0.11494  3.51511     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     24   3.10913  2.60819  3.15650  0.17540     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     25   0.13925  3.40055  2.81508  3.30414     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     26   3.10913  2.60819  3.15650  0.17540     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     27   2.96162  3.60830  0.11494  3.51511     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     28   3.10913  2.60819  3.15650  0.17540     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     29   3.45647  0.12746  3.50493  2.84597     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     30   3.10913  2.60819  3.15650  0.17540     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     31   2.96162  3.60830  0.11494  3.51511     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     32   2.96162  3.60830  0.11494  3.51511     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     33   2.41679  0.95546  2.48875  0.81386     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     34   3.10913  2.60819  3.15650  0.17540     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     35   2.96162  3.60830  0.11494  3.51511     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     36   0.13925  3.40055  2.81508  3.30414     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     37   2.96162  3.60830  0.11494  3.51511     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     38   2.96162  3.60830  0.11494  3.51511     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     39   2.96162  3.60830  0.11494  3.51511     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     40   3.10913  2.60819  3.15650  0.17540     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     41   3.45647  0.12746  3.50493  2.84597     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     42   3.10913  2.60819  3.15650  0.17540     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     43   0.13925  3.40055  2.81508  3.30414     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     44   0.13925  3.40055  2.81508  3.30414     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     45   3.10913  2.60819  3.15650  0.17540     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01839  4.00492        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_thirtythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:43:45 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4245904999
+STATS LOCAL MSV       -7.5548  0.72784
+STATS LOCAL VITERBI   -8.4188  0.72784
+STATS LOCAL FORWARD   -3.0671  0.72784
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73881  1.39367  1.16744  1.32824
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.81865  0.23582  2.88868  2.35662     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.53331  3.02441  0.20344  2.88069     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_thirtytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:43:38 2012
+NSEQ  10
+EFFN  3.803711
+CKSUM 2157164048
+STATS LOCAL MSV       -6.7794  0.71932
+STATS LOCAL VITERBI   -7.8237  0.71932
+STATS LOCAL FORWARD   -3.9341  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.09383  1.36487  1.18062  1.15746
+          1.38629  1.38629  1.38629  1.38629
+          0.03388  4.09496  4.09496  1.46634  0.26236  0.00000        *
+      1   3.04443  3.73013  0.10270  3.65003      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
+      2   3.59624  0.11233  3.63850  2.94634      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
+      3   3.59624  0.11233  3.63850  2.94634      3 - -
+          1.38629  1.38629  1.38629  1.38629
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+     43   2.48935  0.93066  2.56039  0.80863     43 - -
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+     44   3.23469  2.68782  3.27717  0.15681     44 - -
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+     45   3.23469  2.68782  3.27717  0.15681     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01708  4.07817        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:32:10 2012
+NSEQ  12
+EFFN  3.149414
+CKSUM 2840327789
+STATS LOCAL MSV       -7.9812  0.71931
+STATS LOCAL VITERBI   -7.6469  0.71931
+STATS LOCAL FORWARD   -4.0771  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63594  1.21124  1.19814  1.58159
+          1.38629  1.38629  1.38629  1.38629
+          0.03810  3.97957  3.97957  1.46634  0.26236  0.00000        *
+      1   2.90726  3.52948  0.12374  3.42820      1 - -
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+      2   3.36719  0.13835  3.41939  2.78075      2 - -
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+      3   2.90726  3.52948  0.12374  3.42820      3 - -
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+          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
+     45   3.03132  2.55863  3.08165  0.18819     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01923  3.96070        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_twelve_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:37:51 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1458850192
+STATS LOCAL MSV       -7.6216  0.72751
+STATS LOCAL VITERBI   -8.2841  0.72751
+STATS LOCAL FORWARD   -3.4635  0.72751
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.59062  1.34929  1.16405  1.49362
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_twenty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:41:23 2012
+NSEQ  8
+EFFN  3.410156
+CKSUM 3299966898
+STATS LOCAL MSV       -7.1470  0.71933
+STATS LOCAL VITERBI   -7.8187  0.71933
+STATS LOCAL FORWARD   -3.7441  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.60947  1.21747  1.18790  1.61360
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  0.00000        *
+      1   2.96668  3.61569  0.11415  3.52327      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+      2   3.11656  2.61290  3.16364  0.17424      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+      3   3.46489  0.12648  3.51299  2.85207      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+      4   3.46489  0.12648  3.51299  2.85207      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+      5   2.96668  3.61569  0.11415  3.52327      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+      6   3.11656  2.61290  3.16364  0.17424      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+      7   2.96668  3.61569  0.11415  3.52327      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+      8   2.96668  3.61569  0.11415  3.52327      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+      9   0.13830  3.40786  2.81982  3.31216      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     10   2.96668  3.61569  0.11415  3.52327     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     11   0.13830  3.40786  2.81982  3.31216     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     12   1.19698  1.21537  2.03661  1.30629     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     13   0.13830  3.40786  2.81982  3.31216     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     14   2.46929  0.67848  2.54147  1.11104     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     15   0.13830  3.40786  2.81982  3.31216     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     16   3.11656  2.61290  3.16364  0.17424     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     17   3.46489  0.12648  3.51299  2.85207     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     18   3.46489  0.12648  3.51299  2.85207     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     19   0.13830  3.40786  2.81982  3.31216     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     20   2.96668  3.61569  0.11415  3.52327     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     21   2.96668  3.61569  0.11415  3.52327     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     22   0.13830  3.40786  2.81982  3.31216     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     23   3.46489  0.12648  3.51299  2.85207     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     24   3.46489  0.12648  3.51299  2.85207     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     25   0.13830  3.40786  2.81982  3.31216     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     26   3.46489  0.12648  3.51299  2.85207     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     27   3.11656  2.61290  3.16364  0.17424     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     28   3.46489  0.12648  3.51299  2.85207     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     29   3.46489  0.12648  3.51299  2.85207     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     30   3.11656  2.61290  3.16364  0.17424     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     31   2.96668  3.61569  0.11415  3.52327     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     32   3.11656  2.61290  3.16364  0.17424     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     33   3.46489  0.12648  3.51299  2.85207     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     34   3.11656  2.61290  3.16364  0.17424     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     35   2.96668  3.61569  0.11415  3.52327     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     36   0.13830  3.40786  2.81982  3.31216     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     37   2.96668  3.61569  0.11415  3.52327     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     38   2.96668  3.61569  0.11415  3.52327     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     39   2.96668  3.61569  0.11415  3.52327     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     40   3.46489  0.12648  3.51299  2.85207     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     41   3.46489  0.12648  3.51299  2.85207     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     42   2.96668  3.61569  0.11415  3.52327     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     43   2.96668  3.61569  0.11415  3.52327     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     44   3.46489  0.12648  3.51299  2.85207     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     45   3.11656  2.61290  3.16364  0.17424     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01832  4.00918        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_twentyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:42:55 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3131929729
+STATS LOCAL MSV       -7.4499  0.72770
+STATS LOCAL VITERBI   -8.1418  0.72770
+STATS LOCAL FORWARD   -3.7577  0.72770
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.59063  1.34506  1.21353  1.43325
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_twentyfivea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:42:02 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1347837329
+STATS LOCAL MSV       -7.4541  0.72721
+STATS LOCAL VITERBI   -8.2939  0.72721
+STATS LOCAL FORWARD   -3.3636  0.72721
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92452  1.19705  1.08122  1.54745
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_twentyfiveb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:42:10 2012
+NSEQ  12
+EFFN  3.647461
+CKSUM 1179886168
+STATS LOCAL MSV       -7.3738  0.71933
+STATS LOCAL VITERBI   -7.8429  0.71933
+STATS LOCAL FORWARD   -4.1131  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81069  1.27123  1.12801  1.45975
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  0.00000        *
+      1   3.54628  0.11749  3.59080  2.91069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      2   3.18923  2.65900  3.23350  0.16327      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      3   2.47123  0.80024  2.54304  0.94759      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      4   3.01510  3.68679  0.10688  3.60196      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      5   2.78751  1.78994  2.84762  0.33761      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      6   3.01510  3.68679  0.10688  3.60196      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      7   0.12954  3.47883  2.86559  3.38998      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      8   3.54628  0.11749  3.59080  2.91069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      9   3.54628  0.11749  3.59080  2.91069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     10   0.68274  2.28073  2.23327  1.25393     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     11   0.12954  3.47883  2.86559  3.38998     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.16186  4.06859  2.02240  1.46634  0.26236  1.09861  0.40547
+     12   0.48278  2.39656  2.26531  1.67075     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03942  3.94616  3.94616  1.46634  0.26236  0.22988  1.58293
+     13   3.01510  3.68679  0.10688  3.60196     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     14   0.12954  3.47883  2.86559  3.38998     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     15   3.01510  3.68679  0.10688  3.60196     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     16   2.95542  2.11884  3.00916  0.25046     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     17   3.54628  0.11749  3.59080  2.91069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     18   3.54628  0.11749  3.59080  2.91069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     19   3.18923  2.65900  3.23350  0.16327     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     20   3.01510  3.68679  0.10688  3.60196     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     21   3.01510  3.68679  0.10688  3.60196     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     22   3.01510  3.68679  0.10688  3.60196     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     23   3.54628  0.11749  3.59080  2.91069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     24   3.54628  0.11749  3.59080  2.91069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     25   0.12954  3.47883  2.86559  3.38998     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     26   3.54628  0.11749  3.59080  2.91069     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     27   3.01510  3.68679  0.10688  3.60196     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     28   3.54628  0.11749  3.59080  2.91069     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     29   3.54628  0.11749  3.59080  2.91069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     30   3.18923  2.65900  3.23350  0.16327     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     31   3.01510  3.68679  0.10688  3.60196     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     32   3.18923  2.65900  3.23350  0.16327     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     33   3.54628  0.11749  3.59080  2.91069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     34   3.18923  2.65900  3.23350  0.16327     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     35   3.01510  3.68679  0.10688  3.60196     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     36   0.12954  3.47883  2.86559  3.38998     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     37   3.01510  3.68679  0.10688  3.60196     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     38   3.01510  3.68679  0.10688  3.60196     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     39   3.01510  3.68679  0.10688  3.60196     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     40   3.18923  2.65900  3.23350  0.16327     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     41   3.54628  0.11749  3.59080  2.91069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     42   3.01510  3.68679  0.10688  3.60196     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     43   3.01510  3.68679  0.10688  3.60196     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     44   3.18923  2.65900  3.23350  0.16327     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     45   3.18923  2.65900  3.23350  0.16327     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01755  4.05134        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_twentyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:41:53 2012
+NSEQ  4
+EFFN  3.183594
+CKSUM 3050269107
+STATS LOCAL MSV       -8.1539  0.71932
+STATS LOCAL VITERBI   -7.6627  0.71932
+STATS LOCAL FORWARD   -3.6691  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.05456  1.20166  1.14804  1.37082
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  0.00000        *
+      1   3.38051  0.13666  3.43217  2.79055      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      2   2.91546  3.54130  0.12237  3.44120      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      3   2.91546  3.54130  0.12237  3.44120      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      4   0.14807  3.33468  2.77222  3.23207      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      5   3.38051  0.13666  3.43217  2.79055      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      6   0.14807  3.33468  2.77222  3.23207      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      7   3.04283  2.56598  3.09273  0.18624      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      8   2.91546  3.54130  0.12237  3.44120      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      9   2.91546  3.54130  0.12237  3.44120      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     10   2.91546  3.54130  0.12237  3.44120     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     11   3.38051  0.13666  3.43217  2.79055     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     12   3.04283  2.56598  3.09273  0.18624     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     13   3.04283  2.56598  3.09273  0.18624     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     14   2.91546  3.54130  0.12237  3.44120     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     15   3.04283  2.56598  3.09273  0.18624     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     16   3.38051  0.13666  3.43217  2.79055     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     17   3.38051  0.13666  3.43217  2.79055     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     18   3.38051  0.13666  3.43217  2.79055     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     19   3.38051  0.13666  3.43217  2.79055     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     20   3.04283  2.56598  3.09273  0.18624     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     21   2.91546  3.54130  0.12237  3.44120     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     22   3.04283  2.56598  3.09273  0.18624     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     23   3.38051  0.13666  3.43217  2.79055     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     24   3.38051  0.13666  3.43217  2.79055     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     25   0.14807  3.33468  2.77222  3.23207     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     26   3.04283  2.56598  3.09273  0.18624     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     27   2.91546  3.54130  0.12237  3.44120     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     28   3.04283  2.56598  3.09273  0.18624     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     29   3.38051  0.13666  3.43217  2.79055     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     30   3.04283  2.56598  3.09273  0.18624     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     31   2.91546  3.54130  0.12237  3.44120     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     32   2.91546  3.54130  0.12237  3.44120     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     33   3.38051  0.13666  3.43217  2.79055     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     34   3.04283  2.56598  3.09273  0.18624     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     35   3.38051  0.13666  3.43217  2.79055     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     36   0.14807  3.33468  2.77222  3.23207     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     37   2.91546  3.54130  0.12237  3.44120     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     38   2.91546  3.54130  0.12237  3.44120     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     39   2.91546  3.54130  0.12237  3.44120     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     40   3.04283  2.56598  3.09273  0.18624     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     41   3.38051  0.13666  3.43217  2.79055     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     42   2.91546  3.54130  0.12237  3.44120     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     43   2.91546  3.54130  0.12237  3.44120     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     44   3.38051  0.13666  3.43217  2.79055     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     45   3.04283  2.56598  3.09273  0.18624     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01911  3.96719        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_twentynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:43:04 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2752150723
+STATS LOCAL MSV       -7.4583  0.72844
+STATS LOCAL VITERBI   -8.2852  0.72844
+STATS LOCAL FORWARD   -3.7436  0.72844
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.65923  1.44280  1.31893  1.18408
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_twentyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:42:46 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 42895608
+STATS LOCAL MSV       -7.7972  0.72095
+STATS LOCAL VITERBI   -7.8414  0.72095
+STATS LOCAL FORWARD   -3.6469  0.72095
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.57109  1.55471  1.08177  1.41908
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   0.66361  1.42357  2.15007  2.05820     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   3.30705  0.14631  3.36166  2.73626     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.43440  0.61908  2.50724  1.22957     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.86982  3.47591  0.13017  3.36931     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_twentysixa_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:42:20 2012
+NSEQ  27
+EFFN  3.312378
+CKSUM 1001928202
+STATS LOCAL MSV       -8.0269  0.71933
+STATS LOCAL VITERBI   -7.7446  0.71933
+STATS LOCAL FORWARD   -3.9740  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21823  1.45369  1.60573  1.31008
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  0.00000        *
+      1   2.94522  3.58440  0.11753  3.48872      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+      2   3.42930  0.13066  3.47892  2.82623      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+      3   0.14233  3.37696  2.79978  3.27831      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+      4   3.42930  0.13066  3.47892  2.82623      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+      5   0.14233  3.37696  2.79978  3.27831      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+      6   3.08528  2.59302  3.13356  0.17921      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+      7   3.42930  0.13066  3.47892  2.82623      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+      8   2.94522  3.58440  0.11753  3.48872      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+      9   3.08528  2.59302  3.13356  0.17921      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     10   0.14233  3.37696  2.79978  3.27831     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     11   3.42930  0.13066  3.47892  2.82623     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     12   0.14233  3.37696  2.79978  3.27831     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     13   0.14233  3.37696  2.79978  3.27831     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     14   3.42930  0.13066  3.47892  2.82623     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     15   0.14233  3.37696  2.79978  3.27831     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     16   2.94522  3.58440  0.11753  3.48872     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     17   3.08528  2.59302  3.13356  0.17921     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     18   0.14233  3.37696  2.79978  3.27831     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     19   3.42930  0.13066  3.47892  2.82623     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     20   2.94522  3.58440  0.11753  3.48872     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     21   0.14233  3.37696  2.79978  3.27831     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     22   3.08528  2.59302  3.13356  0.17921     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     23   2.94522  3.58440  0.11753  3.48872     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     24   3.08528  2.59302  3.13356  0.17921     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     25   0.14233  3.37696  2.79978  3.27831     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     26   3.42930  0.13066  3.47892  2.82623     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     27   0.14233  3.37696  2.79978  3.27831     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     28   3.42930  0.13066  3.47892  2.82623     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     29   0.14233  3.37696  2.79978  3.27831     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     30   3.08528  2.59302  3.13356  0.17921     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     31   3.08528  2.59302  3.13356  0.17921     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     32   3.08528  2.59302  3.13356  0.17921     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     33   3.08528  2.59302  3.13356  0.17921     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     34   3.08528  2.59302  3.13356  0.17921     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     35   2.94522  3.58440  0.11753  3.48872     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     36   0.14233  3.37696  2.79978  3.27831     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     37   2.94522  3.58440  0.11753  3.48872     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     38   3.08528  2.59302  3.13356  0.17921     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     39   2.94522  3.58440  0.11753  3.48872     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     40   3.42930  0.13066  3.47892  2.82623     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     41   3.42930  0.13066  3.47892  2.82623     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     42   3.08528  2.59302  3.13356  0.17921     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     43   0.14233  3.37696  2.79978  3.27831     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     44   3.08528  2.59302  3.13356  0.17921     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
+     45   0.14233  3.37696  2.79978  3.27831     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01865  3.99127        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_twentysixb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:42:27 2012
+NSEQ  6
+EFFN  3.336914
+CKSUM 1511690450
+STATS LOCAL MSV       -8.0062  0.71933
+STATS LOCAL VITERBI   -7.8597  0.71933
+STATS LOCAL FORWARD   -4.1594  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27761  1.37703  1.70358  1.24848
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  0.00000        *
+      1   3.43835  0.12958  3.48758  2.83281      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      2   0.14130  3.38481  2.80488  3.28690      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      3   3.43835  0.12958  3.48758  2.83281      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      4   0.14130  3.38481  2.80488  3.28690      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      5   3.09320  2.59806  3.14118  0.17794      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      6   3.43835  0.12958  3.48758  2.83281      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      7   2.95070  3.59237  0.11666  3.49752      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      8   3.09320  2.59806  3.14118  0.17794      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      9   0.14130  3.38481  2.80488  3.28690      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     10   3.43835  0.12958  3.48758  2.83281     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     11   3.09320  2.59806  3.14118  0.17794     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     12   0.14130  3.38481  2.80488  3.28690     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     13   3.43835  0.12958  3.48758  2.83281     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     14   3.43835  0.12958  3.48758  2.83281     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     15   0.14130  3.38481  2.80488  3.28690     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     16   2.95070  3.59237  0.11666  3.49752     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     17   3.09320  2.59806  3.14118  0.17794     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     18   0.14130  3.38481  2.80488  3.28690     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     19   3.43835  0.12958  3.48758  2.83281     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     20   2.95070  3.59237  0.11666  3.49752     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     21   0.14130  3.38481  2.80488  3.28690     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     22   3.09320  2.59806  3.14118  0.17794     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     23   2.95070  3.59237  0.11666  3.49752     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     24   3.09320  2.59806  3.14118  0.17794     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     25   0.14130  3.38481  2.80488  3.28690     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     26   3.43835  0.12958  3.48758  2.83281     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     27   0.14130  3.38481  2.80488  3.28690     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     28   3.43835  0.12958  3.48758  2.83281     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     29   0.14130  3.38481  2.80488  3.28690     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     30   3.09320  2.59806  3.14118  0.17794     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     31   3.09320  2.59806  3.14118  0.17794     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     32   3.09320  2.59806  3.14118  0.17794     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     33   3.09320  2.59806  3.14118  0.17794     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     34   3.09320  2.59806  3.14118  0.17794     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     35   2.95070  3.59237  0.11666  3.49752     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     36   0.14130  3.38481  2.80488  3.28690     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     37   2.95070  3.59237  0.11666  3.49752     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     38   3.09320  2.59806  3.14118  0.17794     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     39   2.95070  3.59237  0.11666  3.49752     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     40   3.43835  0.12958  3.48758  2.83281     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     41   3.43835  0.12958  3.48758  2.83281     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     42   3.09320  2.59806  3.14118  0.17794     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     43   0.14130  3.38481  2.80488  3.28690     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     44   3.09320  2.59806  3.14118  0.17794     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     45   0.14130  3.38481  2.80488  3.28690     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01856  3.99580        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_twentysixc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:42:34 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2995473350
+STATS LOCAL MSV       -7.8423  0.72105
+STATS LOCAL VITERBI   -7.8409  0.72105
+STATS LOCAL FORWARD   -4.0058  0.72105
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.38925  1.30984  1.63939  1.24905
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   0.15719  3.27118  2.73043  3.16274      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   0.15719  3.27118  2.73043  3.16274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   1.34853  2.58976  0.54705  2.44542     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   0.15719  3.27118  2.73043  3.16274     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.97980  2.52563  3.03204  0.19727     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   3.30705  0.14631  3.36166  2.73626     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.97980  2.52563  3.03204  0.19727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_twentythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:41:43 2012
+NSEQ  5
+EFFN  3.168945
+CKSUM 2402151252
+STATS LOCAL MSV       -8.2245  0.71933
+STATS LOCAL VITERBI   -7.7908  0.71933
+STATS LOCAL FORWARD   -3.7390  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.19200  1.20214  1.09639  1.37168
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  0.00000        *
+      1   3.37482  0.13738  3.42671  2.78637      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      2   2.91196  3.53626  0.12295  3.43565      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
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+     45   3.03791  2.56284  3.08799  0.18707     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01916  3.96442        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_twentytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:41:31 2012
+NSEQ  4
+EFFN  3.285156
+CKSUM 2170479953
+STATS LOCAL MSV       -8.1192  0.71931
+STATS LOCAL VITERBI   -7.6756  0.71931
+STATS LOCAL FORWARD   -3.9175  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.05755  1.37480  1.20037  1.14488
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  0.00000        *
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+      2   2.93908  3.57547  0.11851  3.47887      2 - -
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+      4   0.14350  3.36817  2.79406  3.26870      4 - -
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+     44   3.07642  2.58739  3.12504  0.18065     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     45   3.07642  2.58739  3.12504  0.18065     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01874  3.98623        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Metazoa_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 25 14:32:02 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2895312499
+STATS LOCAL MSV       -7.3425  0.72926
+STATS LOCAL VITERBI   -8.4252  0.72926
+STATS LOCAL FORWARD   -3.6064  0.72926
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.49454  1.29882  1.37030  1.39126
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   1.01448  1.11006  1.95471  1.79419     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.15554  1.00938  2.23102  0.88601     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_eighta_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:21:27 2012
+NSEQ  6
+EFFN  3.717773
+CKSUM 2863453789
+STATS LOCAL MSV       -7.0487  0.71932
+STATS LOCAL VITERBI   -7.6344  0.71932
+STATS LOCAL FORWARD   -4.3819  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.38691  1.48592  1.27857  1.40476
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  0.00000        *
+      1   3.20992  2.67212  3.25337  0.16030      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+      2   3.20992  2.67212  3.25337  0.16030      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+      3   0.12719  3.49881  2.87844  3.41192      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+      4   2.56541  0.58969  2.63638  1.21405      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+      5   3.56911  0.11510  3.61260  2.92701      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+      6   3.56911  0.11510  3.61260  2.92701      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+      7   3.20992  2.67212  3.25337  0.16030      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+      8   3.02853  3.70662  0.10494  3.62394      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+      9   0.12719  3.49881  2.87844  3.41192      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     10   0.12719  3.49881  2.87844  3.41192     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     11   3.56911  0.11510  3.61260  2.92701     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     12   3.02853  3.70662  0.10494  3.62394     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     13   3.02853  3.70662  0.10494  3.62394     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     14   3.20992  2.67212  3.25337  0.16030     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     15   3.02853  3.70662  0.10494  3.62394     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     16   3.02853  3.70662  0.10494  3.62394     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     17   0.12719  3.49881  2.87844  3.41192     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     18   3.20992  2.67212  3.25337  0.16030     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     19   3.56911  0.11510  3.61260  2.92701     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     20   0.12719  3.49881  2.87844  3.41192     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     21   3.56911  0.11510  3.61260  2.92701     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     22   3.20992  2.67212  3.25337  0.16030     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     23   3.20992  2.67212  3.25337  0.16030     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     24   3.02853  3.70662  0.10494  3.62394     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     25   3.02853  3.70662  0.10494  3.62394     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     26   3.56911  0.11510  3.61260  2.92701     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     27   3.20992  2.67212  3.25337  0.16030     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     28   3.56911  0.11510  3.61260  2.92701     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     29   3.02853  3.70662  0.10494  3.62394     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     30   3.20992  2.67212  3.25337  0.16030     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     31   1.34314  2.72390  0.51432  2.58430     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     32   1.34314  2.72390  0.51432  2.58430     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     33   0.48700  2.71970  1.41005  2.58348     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     34   3.20992  2.67212  3.25337  0.16030     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     35   3.56911  0.11510  3.61260  2.92701     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     36   3.02853  3.70662  0.10494  3.62394     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     37   0.12719  3.49881  2.87844  3.41192     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     38   3.20992  2.67212  3.25337  0.16030     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     39   3.02853  3.70662  0.10494  3.62394     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     40   0.12719  3.49881  2.87844  3.41192     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     41   0.12719  3.49881  2.87844  3.41192     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     42   3.02853  3.70662  0.10494  3.62394     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     43   0.12719  3.49881  2.87844  3.41192     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     44   0.12719  3.49881  2.87844  3.41192     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
+     45   3.56911  0.11510  3.61260  2.92701     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01734  4.06350        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_eightb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:21:34 2012
+NSEQ  5
+EFFN  3.139648
+CKSUM 359213837
+STATS LOCAL MSV       -8.0901  0.71933
+STATS LOCAL VITERBI   -7.7074  0.71933
+STATS LOCAL FORWARD   -4.3936  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40304  1.33441  1.19644  1.66830
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  0.00000        *
+      1   3.36335  0.13885  3.41571  2.77793      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+      2   0.15014  3.31984  2.76249  3.21585      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+      3   0.15014  3.31984  2.76249  3.21585      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+      4   3.36335  0.13885  3.41571  2.77793      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+      5   3.36335  0.13885  3.41571  2.77793      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+      6   3.36335  0.13885  3.41571  2.77793      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+      7   3.02802  2.55652  3.07847  0.18876      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+      8   2.90489  3.52608  0.12414  3.42445      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+      9   0.15014  3.31984  2.76249  3.21585      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     10   0.15014  3.31984  2.76249  3.21585     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     11   3.36335  0.13885  3.41571  2.77793     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     12   2.90489  3.52608  0.12414  3.42445     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     13   2.90489  3.52608  0.12414  3.42445     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     14   3.02802  2.55652  3.07847  0.18876     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     15   2.90489  3.52608  0.12414  3.42445     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     16   2.90489  3.52608  0.12414  3.42445     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     17   0.15014  3.31984  2.76249  3.21585     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     18   3.02802  2.55652  3.07847  0.18876     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     19   3.36335  0.13885  3.41571  2.77793     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     20   0.15014  3.31984  2.76249  3.21585     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     21   3.36335  0.13885  3.41571  2.77793     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     22   3.02802  2.55652  3.07847  0.18876     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     23   3.36335  0.13885  3.41571  2.77793     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     24   2.90489  3.52608  0.12414  3.42445     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     25   2.90489  3.52608  0.12414  3.42445     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     26   3.36335  0.13885  3.41571  2.77793     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     27   3.02802  2.55652  3.07847  0.18876     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     28   3.36335  0.13885  3.41571  2.77793     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     29   2.90489  3.52608  0.12414  3.42445     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     30   3.02802  2.55652  3.07847  0.18876     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     31   2.90489  3.52608  0.12414  3.42445     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     32   2.90489  3.52608  0.12414  3.42445     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     33   2.90489  3.52608  0.12414  3.42445     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     34   3.02802  2.55652  3.07847  0.18876     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     35   3.36335  0.13885  3.41571  2.77793     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     36   2.90489  3.52608  0.12414  3.42445     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     37   0.15014  3.31984  2.76249  3.21585     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     38   3.02802  2.55652  3.07847  0.18876     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     39   2.90489  3.52608  0.12414  3.42445     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     40   0.15014  3.31984  2.76249  3.21585     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     41   0.15014  3.31984  2.76249  3.21585     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     42   2.90489  3.52608  0.12414  3.42445     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     43   0.15014  3.31984  2.76249  3.21585     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     44   0.15014  3.31984  2.76249  3.21585     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     45   3.36335  0.13885  3.41571  2.77793     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01927  3.95884        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_eightc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:21:40 2012
+NSEQ  6
+EFFN  3.131836
+CKSUM 2150464050
+STATS LOCAL MSV       -7.9202  0.71931
+STATS LOCAL VITERBI   -7.7385  0.71931
+STATS LOCAL FORWARD   -4.2104  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47401  1.33573  1.14243  1.66609
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  0.00000        *
+      1   3.02537  2.55482  3.07592  0.18922      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+      2   3.36028  0.13924  3.41276  2.77566      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+      3   0.15052  3.31717  2.76074  3.21294      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+      4   3.36028  0.13924  3.41276  2.77566      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+      5   3.36028  0.13924  3.41276  2.77566      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+      6   3.36028  0.13924  3.41276  2.77566      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+      7   0.15052  3.31717  2.76074  3.21294      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+      8   2.90299  3.52335  0.12446  3.42144      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+      9   2.90299  3.52335  0.12446  3.42144      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     10   0.15052  3.31717  2.76074  3.21294     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     11   3.36028  0.13924  3.41276  2.77566     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     12   2.90299  3.52335  0.12446  3.42144     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     13   2.90299  3.52335  0.12446  3.42144     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     14   3.02537  2.55482  3.07592  0.18922     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     15   2.90299  3.52335  0.12446  3.42144     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     16   2.90299  3.52335  0.12446  3.42144     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     17   0.15052  3.31717  2.76074  3.21294     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     18   3.02537  2.55482  3.07592  0.18922     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     19   3.36028  0.13924  3.41276  2.77566     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     20   0.15052  3.31717  2.76074  3.21294     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     21   3.36028  0.13924  3.41276  2.77566     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     22   3.02537  2.55482  3.07592  0.18922     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     23   3.36028  0.13924  3.41276  2.77566     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     24   2.90299  3.52335  0.12446  3.42144     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     25   2.90299  3.52335  0.12446  3.42144     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     26   3.36028  0.13924  3.41276  2.77566     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     27   3.02537  2.55482  3.07592  0.18922     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     28   3.36028  0.13924  3.41276  2.77566     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     29   2.90299  3.52335  0.12446  3.42144     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     30   3.02537  2.55482  3.07592  0.18922     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     31   2.90299  3.52335  0.12446  3.42144     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     32   2.90299  3.52335  0.12446  3.42144     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     33   2.90299  3.52335  0.12446  3.42144     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     34   3.02537  2.55482  3.07592  0.18922     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     35   3.36028  0.13924  3.41276  2.77566     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     36   2.90299  3.52335  0.12446  3.42144     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     37   0.15052  3.31717  2.76074  3.21294     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     38   3.02537  2.55482  3.07592  0.18922     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     39   2.90299  3.52335  0.12446  3.42144     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     40   0.15052  3.31717  2.76074  3.21294     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     41   0.15052  3.31717  2.76074  3.21294     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     42   2.90299  3.52335  0.12446  3.42144     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     43   0.15052  3.31717  2.76074  3.21294     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     44   0.15052  3.31717  2.76074  3.21294     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     45   3.36028  0.13924  3.41276  2.77566     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01930  3.95735        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_eightd_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:21:46 2012
+NSEQ  4
+EFFN  3.144531
+CKSUM 621050015
+STATS LOCAL MSV       -8.0901  0.71931
+STATS LOCAL VITERBI   -7.7041  0.71931
+STATS LOCAL FORWARD   -4.3950  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40305  1.33436  1.19640  1.66841
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  0.00000        *
+      1   3.36527  0.13860  3.41755  2.77934      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+      2   0.14991  3.32150  2.76358  3.21766      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+      3   0.14991  3.32150  2.76358  3.21766      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+      4   3.36527  0.13860  3.41755  2.77934      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+      5   3.36527  0.13860  3.41755  2.77934      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+      6   3.36527  0.13860  3.41755  2.77934      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+      7   3.02967  2.55757  3.08006  0.18848      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+      8   2.90608  3.52778  0.12394  3.42632      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+      9   0.14991  3.32150  2.76358  3.21766      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     10   0.14991  3.32150  2.76358  3.21766     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     11   3.36527  0.13860  3.41755  2.77934     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     12   2.90608  3.52778  0.12394  3.42632     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     13   2.90608  3.52778  0.12394  3.42632     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     14   3.02967  2.55757  3.08006  0.18848     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     15   2.90608  3.52778  0.12394  3.42632     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     16   2.90608  3.52778  0.12394  3.42632     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     17   0.14991  3.32150  2.76358  3.21766     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     18   3.02967  2.55757  3.08006  0.18848     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     19   3.36527  0.13860  3.41755  2.77934     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     20   0.14991  3.32150  2.76358  3.21766     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     21   3.36527  0.13860  3.41755  2.77934     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     22   3.02967  2.55757  3.08006  0.18848     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     23   3.36527  0.13860  3.41755  2.77934     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     24   2.90608  3.52778  0.12394  3.42632     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     25   2.90608  3.52778  0.12394  3.42632     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     26   3.36527  0.13860  3.41755  2.77934     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     27   3.02967  2.55757  3.08006  0.18848     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     28   3.36527  0.13860  3.41755  2.77934     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     29   2.90608  3.52778  0.12394  3.42632     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     30   3.02967  2.55757  3.08006  0.18848     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     31   2.90608  3.52778  0.12394  3.42632     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     32   2.90608  3.52778  0.12394  3.42632     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     33   2.90608  3.52778  0.12394  3.42632     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     34   3.02967  2.55757  3.08006  0.18848     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     35   3.36527  0.13860  3.41755  2.77934     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     36   2.90608  3.52778  0.12394  3.42632     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     37   0.14991  3.32150  2.76358  3.21766     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     38   3.02967  2.55757  3.08006  0.18848     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     39   2.90608  3.52778  0.12394  3.42632     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     40   0.14991  3.32150  2.76358  3.21766     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     41   0.14991  3.32150  2.76358  3.21766     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     42   2.90608  3.52778  0.12394  3.42632     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     43   0.14991  3.32150  2.76358  3.21766     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     44   0.14991  3.32150  2.76358  3.21766     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
+     45   3.36527  0.13860  3.41755  2.77934     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01925  3.95977        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_eighteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:25:28 2012
+NSEQ  4
+EFFN  3.402344
+CKSUM 2172714013
+STATS LOCAL MSV       -7.1051  0.71931
+STATS LOCAL VITERBI   -7.8590  0.71931
+STATS LOCAL FORWARD   -3.9748  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.32697  1.77182  1.24425  1.28540
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  0.00000        *
+      1   0.13862  3.40543  2.81825  3.30949      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      2   3.11409  2.61134  3.16126  0.17462      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      3   0.13862  3.40543  2.81825  3.30949      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      4   2.41957  0.95497  2.49149  0.81322      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      5   3.11409  2.61134  3.16126  0.17462      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      6   3.11409  2.61134  3.16126  0.17462      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      7   3.11409  2.61134  3.16126  0.17462      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      8   2.96500  3.61323  0.11441  3.52056      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+      9   0.13862  3.40543  2.81825  3.30949      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     10   2.96500  3.61323  0.11441  3.52056     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     11   3.46209  0.12680  3.51031  2.85005     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     12   0.13862  3.40543  2.81825  3.30949     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     13   2.96500  3.61323  0.11441  3.52056     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     14   3.11409  2.61134  3.16126  0.17462     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     15   2.96500  3.61323  0.11441  3.52056     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     16   2.96500  3.61323  0.11441  3.52056     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     17   0.13862  3.40543  2.81825  3.30949     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     18   3.11409  2.61134  3.16126  0.17462     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     19   3.46209  0.12680  3.51031  2.85005     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     20   0.13862  3.40543  2.81825  3.30949     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     21   3.46209  0.12680  3.51031  2.85005     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     22   3.11409  2.61134  3.16126  0.17462     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     23   2.96500  3.61323  0.11441  3.52056     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     24   2.96500  3.61323  0.11441  3.52056     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     25   2.96500  3.61323  0.11441  3.52056     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     26   3.11409  2.61134  3.16126  0.17462     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     27   3.11409  2.61134  3.16126  0.17462     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     28   3.46209  0.12680  3.51031  2.85005     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     29   2.96500  3.61323  0.11441  3.52056     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     30   3.11409  2.61134  3.16126  0.17462     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     31   3.11409  2.61134  3.16126  0.17462     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     32   2.96500  3.61323  0.11441  3.52056     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     33   2.96500  3.61323  0.11441  3.52056     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     34   3.11409  2.61134  3.16126  0.17462     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     35   3.46209  0.12680  3.51031  2.85005     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     36   2.96500  3.61323  0.11441  3.52056     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     37   0.13862  3.40543  2.81825  3.30949     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     38   3.11409  2.61134  3.16126  0.17462     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     39   2.96500  3.61323  0.11441  3.52056     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     40   0.13862  3.40543  2.81825  3.30949     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     41   0.13862  3.40543  2.81825  3.30949     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     42   0.13862  3.40543  2.81825  3.30949     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     43   0.13862  3.40543  2.81825  3.30949     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     44   0.13862  3.40543  2.81825  3.30949     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
+     45   3.46209  0.12680  3.51031  2.85005     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01834  4.00776        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_eleven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:22:19 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 102249527
+STATS LOCAL MSV       -7.9658  0.72022
+STATS LOCAL VITERBI   -7.9027  0.72022
+STATS LOCAL FORWARD   -4.1930  0.72022
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40169  1.39125  1.31583  1.44052
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   0.15719  3.27118  2.73043  3.16274      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.97980  2.52563  3.03204  0.19727     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   3.30705  0.14631  3.36166  2.73626     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.86982  3.47591  0.13017  3.36931     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.86982  3.47591  0.13017  3.36931     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_fifteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:23:16 2012
+NSEQ  9
+EFFN  3.168457
+CKSUM 1135211888
+STATS LOCAL MSV       -8.0522  0.71931
+STATS LOCAL VITERBI   -7.8212  0.71931
+STATS LOCAL FORWARD   -4.0461  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40316  1.39893  1.19534  1.58612
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  0.00000        *
+      1   3.03775  2.56273  3.08783  0.18710      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      2   3.37463  0.13741  3.42653  2.78623      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      3   0.14877  3.32959  2.76888  3.22651      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      4   3.37463  0.13741  3.42653  2.78623      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      5   0.14877  3.32959  2.76888  3.22651      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      6   3.37463  0.13741  3.42653  2.78623      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      7   3.37463  0.13741  3.42653  2.78623      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      8   2.91185  3.53609  0.12297  3.43546      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      9   3.03775  2.56273  3.08783  0.18710      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     10   0.14877  3.32959  2.76888  3.22651     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     11   3.37463  0.13741  3.42653  2.78623     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     12   0.14877  3.32959  2.76888  3.22651     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     13   2.91185  3.53609  0.12297  3.43546     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     14   3.03775  2.56273  3.08783  0.18710     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     15   2.91185  3.53609  0.12297  3.43546     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     16   2.91185  3.53609  0.12297  3.43546     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     17   0.14877  3.32959  2.76888  3.22651     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     18   3.03775  2.56273  3.08783  0.18710     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     19   3.37463  0.13741  3.42653  2.78623     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     20   0.14877  3.32959  2.76888  3.22651     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     21   3.37463  0.13741  3.42653  2.78623     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     22   3.03775  2.56273  3.08783  0.18710     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     23   3.03775  2.56273  3.08783  0.18710     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     24   2.91185  3.53609  0.12297  3.43546     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     25   2.91185  3.53609  0.12297  3.43546     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     26   3.37463  0.13741  3.42653  2.78623     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     27   3.03775  2.56273  3.08783  0.18710     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     28   3.37463  0.13741  3.42653  2.78623     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     29   2.91185  3.53609  0.12297  3.43546     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     30   2.91185  3.53609  0.12297  3.43546     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     31   2.91185  3.53609  0.12297  3.43546     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     32   2.91185  3.53609  0.12297  3.43546     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     33   2.91185  3.53609  0.12297  3.43546     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     34   3.03775  2.56273  3.08783  0.18710     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     35   3.37463  0.13741  3.42653  2.78623     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     36   2.91185  3.53609  0.12297  3.43546     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     37   0.14877  3.32959  2.76888  3.22651     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     38   3.03775  2.56273  3.08783  0.18710     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     39   2.91185  3.53609  0.12297  3.43546     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     40   0.14877  3.32959  2.76888  3.22651     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     41   0.14877  3.32959  2.76888  3.22651     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     42   2.91185  3.53609  0.12297  3.43546     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     43   0.14877  3.32959  2.76888  3.22651     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     44   0.14877  3.32959  2.76888  3.22651     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     45   3.37463  0.13741  3.42653  2.78623     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01916  3.96432        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_fivea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:20:34 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2657386057
+STATS LOCAL MSV       -7.6114  0.72740
+STATS LOCAL VITERBI   -8.1839  0.72740
+STATS LOCAL FORWARD   -3.5106  0.72740
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.52168  1.35229  1.16662  1.55311
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_fiveb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:20:41 2012
+NSEQ  6
+EFFN  3.413086
+CKSUM 1109677504
+STATS LOCAL MSV       -7.3172  0.71933
+STATS LOCAL VITERBI   -7.5061  0.71933
+STATS LOCAL FORWARD   -4.2818  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39650  1.43701  1.27755  1.44315
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  0.00000        *
+      1   3.11748  2.61349  3.16453  0.17409      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      2   3.46593  0.12636  3.51399  2.85283      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      3   0.13819  3.40877  2.82041  3.31315      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      4   3.46593  0.12636  3.51399  2.85283      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      5   3.11748  2.61349  3.16453  0.17409      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      6   3.46593  0.12636  3.51399  2.85283      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      7   3.11748  2.61349  3.16453  0.17409      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      8   0.13819  3.40877  2.82041  3.31315      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      9   0.13819  3.40877  2.82041  3.31315      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     10   2.96731  3.61661  0.11405  3.52429     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     11   3.46593  0.12636  3.51399  2.85283     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     12   2.96731  3.61661  0.11405  3.52429     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     13   2.96731  3.61661  0.11405  3.52429     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     14   3.11748  2.61349  3.16453  0.17409     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     15   2.96731  3.61661  0.11405  3.52429     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     16   2.96731  3.61661  0.11405  3.52429     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     17   0.13819  3.40877  2.82041  3.31315     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     18   3.11748  2.61349  3.16453  0.17409     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     19   3.46593  0.12636  3.51399  2.85283     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     20   0.13819  3.40877  2.82041  3.31315     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     21   3.46593  0.12636  3.51399  2.85283     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     22   3.11748  2.61349  3.16453  0.17409     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     23   2.74264  1.80999  2.80364  0.34058     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     24   2.96731  3.61661  0.11405  3.52429     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     25   2.96731  3.61661  0.11405  3.52429     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     26   3.46593  0.12636  3.51399  2.85283     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     27   3.11748  2.61349  3.16453  0.17409     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     28   3.46593  0.12636  3.51399  2.85283     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     29   0.13819  3.40877  2.82041  3.31315     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     30   3.11748  2.61349  3.16453  0.17409     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     31   2.96731  3.61661  0.11405  3.52429     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     32   2.15655  1.42170  0.64537  2.13283     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     33   2.96731  3.61661  0.11405  3.52429     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     34   3.11748  2.61349  3.16453  0.17409     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     35   3.46593  0.12636  3.51399  2.85283     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     36   2.96731  3.61661  0.11405  3.52429     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     37   0.13819  3.40877  2.82041  3.31315     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     38   3.11748  2.61349  3.16453  0.17409     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     39   2.96731  3.61661  0.11405  3.52429     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     40   0.13819  3.40877  2.82041  3.31315     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     41   0.13819  3.40877  2.82041  3.31315     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     42   2.96731  3.61661  0.11405  3.52429     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     43   0.13819  3.40877  2.82041  3.31315     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     44   0.13819  3.40877  2.82041  3.31315     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     45   3.46593  0.12636  3.51399  2.85283     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01831  4.00971        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_foura_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:19:15 2012
+NSEQ  18
+EFFN  3.476074
+CKSUM 217135792
+STATS LOCAL MSV       -7.4129  0.71931
+STATS LOCAL VITERBI   -7.8161  0.71931
+STATS LOCAL FORWARD   -4.2841  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.37384  1.58932  1.21260  1.40496
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  0.00000        *
+      1   2.43287  0.95742  2.50459  0.80603      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+      2   0.13573  3.42814  2.83293  3.33438      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+      3   0.13573  3.42814  2.83293  3.33438      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+      4   0.13573  3.42814  2.83293  3.33438      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+      5   3.13720  2.62601  3.18348  0.17104      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+      6   3.48819  0.12383  3.53528  2.86892      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+      7   3.13720  2.62601  3.18348  0.17104      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+      8   3.13720  2.62601  3.18348  0.17104      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+      9   1.17399  2.60648  0.63128  2.46315      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     10   2.98064  3.63611  0.11200  3.54585     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     11   3.48819  0.12383  3.53528  2.86892     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     12   2.98064  3.63611  0.11200  3.54585     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     13   2.98064  3.63611  0.11200  3.54585     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     14   3.13720  2.62601  3.18348  0.17104     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     15   2.98064  3.63611  0.11200  3.54585     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     16   2.98064  3.63611  0.11200  3.54585     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     17   0.13573  3.42814  2.83293  3.33438     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     18   3.13720  2.62601  3.18348  0.17104     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     19   3.48819  0.12383  3.53528  2.86892     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     20   0.13573  3.42814  2.83293  3.33438     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     21   3.48819  0.12383  3.53528  2.86892     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     22   3.13720  2.62601  3.18348  0.17104     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     23   3.48819  0.12383  3.53528  2.86892     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     24   2.98064  3.63611  0.11200  3.54585     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     25   2.98064  3.63611  0.11200  3.54585     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     26   3.13720  2.62601  3.18348  0.17104     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     27   3.13720  2.62601  3.18348  0.17104     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     28   3.48819  0.12383  3.53528  2.86892     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     29   2.98064  3.63611  0.11200  3.54585     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     30   3.13720  2.62601  3.18348  0.17104     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     31   2.98064  3.63611  0.11200  3.54585     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     32   2.98064  3.63611  0.11200  3.54585     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     33   0.13573  3.42814  2.83293  3.33438     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     34   3.13720  2.62601  3.18348  0.17104     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     35   3.48819  0.12383  3.53528  2.86892     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     36   2.98064  3.63611  0.11200  3.54585     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     37   0.13573  3.42814  2.83293  3.33438     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     38   3.13720  2.62601  3.18348  0.17104     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     39   2.98064  3.63611  0.11200  3.54585     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     40   0.13573  3.42814  2.83293  3.33438     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     41   0.13573  3.42814  2.83293  3.33438     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     42   2.98064  3.63611  0.11200  3.54585     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     43   0.13573  3.42814  2.83293  3.33438     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     44   0.13573  3.42814  2.83293  3.33438     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
+     45   3.48819  0.12383  3.53528  2.86892     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01810  4.02107        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_fourb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:19:21 2012
+NSEQ  21
+EFFN  3.811890
+CKSUM 3684173544
+STATS LOCAL MSV       -7.2077  0.71932
+STATS LOCAL VITERBI   -7.7384  0.71932
+STATS LOCAL FORWARD   -4.3623  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40447  1.49377  1.24618  1.41726
+          1.38629  1.38629  1.38629  1.38629
+          0.03383  4.09632  4.09632  1.46634  0.26236  0.00000        *
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+          1.38629  1.38629  1.38629  1.38629
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+     44   0.12420  3.52484  2.89516  3.44053     44 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   3.59878  0.11207  3.64093  2.94815     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01706  4.07955        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_fourc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:19:25 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 485987772
+STATS LOCAL MSV       -7.9007  0.72085
+STATS LOCAL VITERBI   -7.9323  0.72085
+STATS LOCAL FORWARD   -4.0009  0.72085
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.31900  1.60612  1.33370  1.31516
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
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+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_fourd_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:19:37 2012
+NSEQ  62
+EFFN  3.515503
+CKSUM 970865132
+STATS LOCAL MSV       -7.4111  0.71932
+STATS LOCAL VITERBI   -7.8849  0.71932
+STATS LOCAL FORWARD   -4.2467  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34248  1.52639  1.35353  1.33501
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  0.00000        *
+      1   3.50187  0.12230  3.54836  2.87879      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+      2   0.13425  3.44005  2.84062  3.34744      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+      3   0.13425  3.44005  2.84062  3.34744      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+      4   2.98879  3.64807  0.11077  3.55908      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+      5   3.14938  2.63373  3.19519  0.16919      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+      6   3.50187  0.12230  3.54836  2.87879      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+      7   3.14938  2.63373  3.19519  0.16919      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+      8   3.14938  2.63373  3.19519  0.16919      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+      9   0.33003  2.89879  1.81100  2.77229      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     10   3.14938  2.63373  3.19519  0.16919     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     11   3.50187  0.12230  3.54836  2.87879     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     12   2.98879  3.64807  0.11077  3.55908     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     13   2.98879  3.64807  0.11077  3.55908     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     14   3.14938  2.63373  3.19519  0.16919     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     15   2.98879  3.64807  0.11077  3.55908     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     16   2.98879  3.64807  0.11077  3.55908     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     17   0.13425  3.44005  2.84062  3.34744     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     18   3.14938  2.63373  3.19519  0.16919     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     19   3.50187  0.12230  3.54836  2.87879     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     20   0.13425  3.44005  2.84062  3.34744     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     21   3.50187  0.12230  3.54836  2.87879     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     22   3.14938  2.63373  3.19519  0.16919     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     23   3.50187  0.12230  3.54836  2.87879     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     24   2.98879  3.64807  0.11077  3.55908     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     25   2.98879  3.64807  0.11077  3.55908     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     26   3.14938  2.63373  3.19519  0.16919     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     27   3.14938  2.63373  3.19519  0.16919     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     28   3.50187  0.12230  3.54836  2.87879     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     29   2.98879  3.64807  0.11077  3.55908     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     30   3.14938  2.63373  3.19519  0.16919     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     31   0.13425  3.44005  2.84062  3.34744     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     32   2.98879  3.64807  0.11077  3.55908     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     33   1.83933  2.10339  1.47710  0.71185     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     34   3.14938  2.63373  3.19519  0.16919     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     35   3.50187  0.12230  3.54836  2.87879     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     36   2.98879  3.64807  0.11077  3.55908     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     37   0.13425  3.44005  2.84062  3.34744     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     38   3.14938  2.63373  3.19519  0.16919     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     39   2.98879  3.64807  0.11077  3.55908     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     40   0.13425  3.44005  2.84062  3.34744     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     41   0.13425  3.44005  2.84062  3.34744     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     42   0.19556  3.22260  2.37017  3.11653     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     43   0.13425  3.44005  2.84062  3.34744     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     44   0.13425  3.44005  2.84062  3.34744     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
+     45   3.50187  0.12230  3.54836  2.87879     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01797  4.02812        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_foure_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:19:42 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2649644998
+STATS LOCAL MSV       -7.3985  0.72830
+STATS LOCAL VITERBI   -8.4341  0.72830
+STATS LOCAL FORWARD   -3.3435  0.72830
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23428  1.58647  1.42785  1.32997
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_fourf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:19:47 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1198425551
+STATS LOCAL MSV       -8.1155  0.72049
+STATS LOCAL VITERBI   -8.0778  0.72049
+STATS LOCAL FORWARD   -4.1553  0.72049
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.46416  1.79106  1.19266  1.20888
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.97980  2.52563  3.03204  0.19727     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.86982  3.47591  0.13017  3.36931     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.86982  3.47591  0.13017  3.36931     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_fourg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:19:51 2012
+NSEQ  5
+EFFN  3.334961
+CKSUM 284011394
+STATS LOCAL MSV       -8.1464  0.71932
+STATS LOCAL VITERBI   -7.7199  0.71932
+STATS LOCAL FORWARD   -4.2570  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39548  1.58131  1.18843  1.41931
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  0.00000        *
+      1   3.43763  0.12967  3.48690  2.83229      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      2   0.14138  3.38419  2.80447  3.28622      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      3   0.14138  3.38419  2.80447  3.28622      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      4   2.95026  3.59174  0.11672  3.49682      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      5   3.09257  2.59766  3.14057  0.17804      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      6   3.09257  2.59766  3.14057  0.17804      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      7   0.14138  3.38419  2.80447  3.28622      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      8   3.09257  2.59766  3.14057  0.17804      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      9   2.95026  3.59174  0.11672  3.49682      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     10   3.09257  2.59766  3.14057  0.17804     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     11   3.43763  0.12967  3.48690  2.83229     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     12   2.95026  3.59174  0.11672  3.49682     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     13   2.95026  3.59174  0.11672  3.49682     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     14   2.43516  0.73703  2.50766  1.04291     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     15   2.95026  3.59174  0.11672  3.49682     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     16   0.14138  3.38419  2.80447  3.28622     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     17   0.14138  3.38419  2.80447  3.28622     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     18   3.09257  2.59766  3.14057  0.17804     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     19   3.43763  0.12967  3.48690  2.83229     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     20   0.14138  3.38419  2.80447  3.28622     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     21   3.43763  0.12967  3.48690  2.83229     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     22   3.09257  2.59766  3.14057  0.17804     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     23   3.09257  2.59766  3.14057  0.17804     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     24   2.95026  3.59174  0.11672  3.49682     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     25   2.95026  3.59174  0.11672  3.49682     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     26   3.43763  0.12967  3.48690  2.83229     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     27   3.09257  2.59766  3.14057  0.17804     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     28   3.43763  0.12967  3.48690  2.83229     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     29   2.95026  3.59174  0.11672  3.49682     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     30   3.09257  2.59766  3.14057  0.17804     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     31   2.95026  3.59174  0.11672  3.49682     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     32   2.95026  3.59174  0.11672  3.49682     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     33   2.95026  3.59174  0.11672  3.49682     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     34   3.09257  2.59766  3.14057  0.17804     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     35   3.43763  0.12967  3.48690  2.83229     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     36   2.95026  3.59174  0.11672  3.49682     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     37   0.14138  3.38419  2.80447  3.28622     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     38   3.09257  2.59766  3.14057  0.17804     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     39   2.95026  3.59174  0.11672  3.49682     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     40   0.14138  3.38419  2.80447  3.28622     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     41   0.14138  3.38419  2.80447  3.28622     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     42   2.95026  3.59174  0.11672  3.49682     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     43   0.14138  3.38419  2.80447  3.28622     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     44   0.14138  3.38419  2.80447  3.28622     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     45   3.43763  0.12967  3.48690  2.83229     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01857  3.99544        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_fourh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:19:56 2012
+NSEQ  4
+EFFN  3.535156
+CKSUM 2684874225
+STATS LOCAL MSV       -7.5664  0.71933
+STATS LOCAL VITERBI   -7.8243  0.71933
+STATS LOCAL FORWARD   -4.2092  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34147  1.61360  1.27975  1.34223
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  0.00000        *
+      1   0.96697  2.16989  2.18618  0.93335      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+      2   0.13352  3.44594  2.84442  3.35389      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+      3   0.13352  3.44594  2.84442  3.35389      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+      4   2.99280  3.65396  0.11017  3.56561      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+      5   3.15540  2.63755  3.20098  0.16828      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+      6   3.15540  2.63755  3.20098  0.16828      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+      7   0.85306  2.55020  0.90229  2.40593      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+      8   3.50862  0.12155  3.55481  2.88365      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+      9   3.15540  2.63755  3.20098  0.16828      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     10   3.15540  2.63755  3.20098  0.16828     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     11   3.50862  0.12155  3.55481  2.88365     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     12   2.99280  3.65396  0.11017  3.56561     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     13   2.99280  3.65396  0.11017  3.56561     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     14   3.15540  2.63755  3.20098  0.16828     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     15   2.99280  3.65396  0.11017  3.56561     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     16   2.99280  3.65396  0.11017  3.56561     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     17   0.13352  3.44594  2.84442  3.35389     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     18   3.15540  2.63755  3.20098  0.16828     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     19   3.50862  0.12155  3.55481  2.88365     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     20   0.13352  3.44594  2.84442  3.35389     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     21   3.50862  0.12155  3.55481  2.88365     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     22   3.15540  2.63755  3.20098  0.16828     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     23   3.15540  2.63755  3.20098  0.16828     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     24   2.99280  3.65396  0.11017  3.56561     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     25   2.99280  3.65396  0.11017  3.56561     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     26   3.15540  2.63755  3.20098  0.16828     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     27   3.15540  2.63755  3.20098  0.16828     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     28   3.50862  0.12155  3.55481  2.88365     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     29   0.13352  3.44594  2.84442  3.35389     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     30   3.50862  0.12155  3.55481  2.88365     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     31   2.99280  3.65396  0.11017  3.56561     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     32   2.99280  3.65396  0.11017  3.56561     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     33   2.99280  3.65396  0.11017  3.56561     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     34   3.15540  2.63755  3.20098  0.16828     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     35   3.50862  0.12155  3.55481  2.88365     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     36   2.99280  3.65396  0.11017  3.56561     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     37   0.13352  3.44594  2.84442  3.35389     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     38   3.15540  2.63755  3.20098  0.16828     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     39   2.99280  3.65396  0.11017  3.56561     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     40   0.13352  3.44594  2.84442  3.35389     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     41   0.13352  3.44594  2.84442  3.35389     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     42   0.13352  3.44594  2.84442  3.35389     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     43   0.13352  3.44594  2.84442  3.35389     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     44   0.13352  3.44594  2.84442  3.35389     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
+     45   3.50862  0.12155  3.55481  2.88365     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01791  4.03161        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_fouri_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:20:00 2012
+NSEQ  4
+EFFN  3.207031
+CKSUM 860438363
+STATS LOCAL MSV       -8.0999  0.71933
+STATS LOCAL VITERBI   -7.9356  0.71933
+STATS LOCAL FORWARD   -4.2503  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39743  1.54380  1.19256  1.44495
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  0.00000        *
+      1   0.14698  3.34251  2.77733  3.24063      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+      2   0.14698  3.34251  2.77733  3.24063      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+      3   0.14698  3.34251  2.77733  3.24063      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+      4   2.92101  3.54931  0.12145  3.45003      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+      5   3.05066  2.57097  3.10026  0.18492      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+      6   3.05066  2.57097  3.10026  0.18492      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+      7   2.92101  3.54931  0.12145  3.45003      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+      8   3.38956  0.13553  3.44084  2.79718      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+      9   3.05066  2.57097  3.10026  0.18492      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     10   3.05066  2.57097  3.10026  0.18492     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     11   3.38956  0.13553  3.44084  2.79718     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     12   2.92101  3.54931  0.12145  3.45003     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     13   2.92101  3.54931  0.12145  3.45003     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     14   3.05066  2.57097  3.10026  0.18492     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     15   2.92101  3.54931  0.12145  3.45003     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     16   2.92101  3.54931  0.12145  3.45003     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     17   0.14698  3.34251  2.77733  3.24063     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     18   3.05066  2.57097  3.10026  0.18492     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     19   3.38956  0.13553  3.44084  2.79718     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     20   0.14698  3.34251  2.77733  3.24063     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     21   3.38956  0.13553  3.44084  2.79718     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     22   3.05066  2.57097  3.10026  0.18492     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     23   3.38956  0.13553  3.44084  2.79718     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     24   2.92101  3.54931  0.12145  3.45003     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     25   2.92101  3.54931  0.12145  3.45003     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     26   3.05066  2.57097  3.10026  0.18492     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     27   3.05066  2.57097  3.10026  0.18492     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     28   3.38956  0.13553  3.44084  2.79718     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     29   2.92101  3.54931  0.12145  3.45003     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     30   3.38956  0.13553  3.44084  2.79718     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     31   2.92101  3.54931  0.12145  3.45003     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     32   2.92101  3.54931  0.12145  3.45003     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     33   2.92101  3.54931  0.12145  3.45003     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     34   3.05066  2.57097  3.10026  0.18492     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     35   3.38956  0.13553  3.44084  2.79718     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     36   2.92101  3.54931  0.12145  3.45003     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     37   0.14698  3.34251  2.77733  3.24063     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     38   3.05066  2.57097  3.10026  0.18492     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     39   2.92101  3.54931  0.12145  3.45003     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     40   0.14698  3.34251  2.77733  3.24063     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     41   0.14698  3.34251  2.77733  3.24063     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     42   0.14698  3.34251  2.77733  3.24063     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     43   0.14698  3.34251  2.77733  3.24063     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     44   0.14698  3.34251  2.77733  3.24063     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     45   3.38956  0.13553  3.44084  2.79718     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01902  3.97162        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_fourj_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:20:06 2012
+NSEQ  17
+EFFN  3.266357
+CKSUM 4174304823
+STATS LOCAL MSV       -8.1085  0.71932
+STATS LOCAL VITERBI   -7.9322  0.71932
+STATS LOCAL FORWARD   -3.9676  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34496  1.46661  1.24888  1.50544
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  0.00000        *
+      1   0.32672  2.69881  2.46028  2.07132      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+      2   0.14432  3.36206  2.79008  3.26201      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+      3   0.14432  3.36206  2.79008  3.26201      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+      4   2.93479  3.56925  0.11920  3.47201      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+      5   3.07027  2.58347  3.11913  0.18166      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+      6   3.07027  2.58347  3.11913  0.18166      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+      7   0.14432  3.36206  2.79008  3.26201      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+      8   3.41212  0.13274  3.46246  2.81369      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+      9   3.07027  2.58347  3.11913  0.18166      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     10   3.41212  0.13274  3.46246  2.81369     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     11   3.41212  0.13274  3.46246  2.81369     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     12   2.93479  3.56925  0.11920  3.47201     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     13   2.93479  3.56925  0.11920  3.47201     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     14   3.07027  2.58347  3.11913  0.18166     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     15   2.93479  3.56925  0.11920  3.47201     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     16   2.93479  3.56925  0.11920  3.47201     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     17   0.14432  3.36206  2.79008  3.26201     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     18   3.07027  2.58347  3.11913  0.18166     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     19   3.41212  0.13274  3.46246  2.81369     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     20   0.14432  3.36206  2.79008  3.26201     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     21   3.41212  0.13274  3.46246  2.81369     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     22   3.07027  2.58347  3.11913  0.18166     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     23   3.41212  0.13274  3.46246  2.81369     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     24   2.93479  3.56925  0.11920  3.47201     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     25   2.93479  3.56925  0.11920  3.47201     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     26   3.07027  2.58347  3.11913  0.18166     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     27   3.07027  2.58347  3.11913  0.18166     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     28   3.41212  0.13274  3.46246  2.81369     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     29   2.93479  3.56925  0.11920  3.47201     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     30   3.41212  0.13274  3.46246  2.81369     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     31   2.93479  3.56925  0.11920  3.47201     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     32   2.93479  3.56925  0.11920  3.47201     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     33   2.93479  3.56925  0.11920  3.47201     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     34   3.07027  2.58347  3.11913  0.18166     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     35   3.41212  0.13274  3.46246  2.81369     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     36   2.93479  3.56925  0.11920  3.47201     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     37   0.14432  3.36206  2.79008  3.26201     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     38   3.07027  2.58347  3.11913  0.18166     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     39   2.93479  3.56925  0.11920  3.47201     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     40   0.14432  3.36206  2.79008  3.26201     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     41   0.14432  3.36206  2.79008  3.26201     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     42   0.14432  3.36206  2.79008  3.26201     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     43   0.14432  3.36206  2.79008  3.26201     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     44   0.14432  3.36206  2.79008  3.26201     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
+     45   3.41212  0.13274  3.46246  2.81369     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01881  3.98273        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_fourk_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:20:12 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 230231236
+STATS LOCAL MSV       -7.4638  0.72773
+STATS LOCAL VITERBI   -8.4182  0.72773
+STATS LOCAL FORWARD   -3.5515  0.72773
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39335  1.53233  1.20977  1.43776
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_fourl_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:20:17 2012
+NSEQ  18
+EFFN  3.730957
+CKSUM 2863177216
+STATS LOCAL MSV       -7.0840  0.71932
+STATS LOCAL VITERBI   -7.7169  0.71932
+STATS LOCAL FORWARD   -4.0032  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.42749  1.45323  1.23415  1.44734
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  0.00000        *
+      1   2.80260  1.78176  2.86243  0.33705      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+      2   0.12676  3.50250  2.88081  3.41598      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+      3   0.12676  3.50250  2.88081  3.41598      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+      4   3.03100  3.71027  0.10459  3.62800      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+      5   3.21376  2.67455  3.25706  0.15975      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+      6   3.21376  2.67455  3.25706  0.15975      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+      7   0.12676  3.50250  2.88081  3.41598      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+      8   3.57332  0.11466  3.61663  2.93001      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+      9   3.21376  2.67455  3.25706  0.15975      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     10   3.57332  0.11466  3.61663  2.93001     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     11   3.57332  0.11466  3.61663  2.93001     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     12   3.03100  3.71027  0.10459  3.62800     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     13   3.03100  3.71027  0.10459  3.62800     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     14   3.21376  2.67455  3.25706  0.15975     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     15   3.03100  3.71027  0.10459  3.62800     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     16   3.03100  3.71027  0.10459  3.62800     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     17   0.12676  3.50250  2.88081  3.41598     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     18   2.90492  1.97839  2.96091  0.28080     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     19   3.57332  0.11466  3.61663  2.93001     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     20   0.12676  3.50250  2.88081  3.41598     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     21   3.57332  0.11466  3.61663  2.93001     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     22   3.21376  2.67455  3.25706  0.15975     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     23   2.90492  1.97839  2.96091  0.28080     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     24   3.03100  3.71027  0.10459  3.62800     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     25   3.03100  3.71027  0.10459  3.62800     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     26   3.07718  0.24256  3.13733  2.07228     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     27   3.21376  2.67455  3.25706  0.15975     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     28   3.27023  0.18298  3.32440  2.37277     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     29   1.95975  3.10588  0.26960  2.98307     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     30   3.57332  0.11466  3.61663  2.93001     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     31   3.03100  3.71027  0.10459  3.62800     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     32   3.03100  3.71027  0.10459  3.62800     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     33   2.76500  3.19127  0.19589  2.60634     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     34   3.21376  2.67455  3.25706  0.15975     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     35   3.57332  0.11466  3.61663  2.93001     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     36   3.03100  3.71027  0.10459  3.62800     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     37   0.12676  3.50250  2.88081  3.41598     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     38   3.21376  2.67455  3.25706  0.15975     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     39   3.03100  3.71027  0.10459  3.62800     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     40   0.12676  3.50250  2.88081  3.41598     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     41   0.12676  3.50250  2.88081  3.41598     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     42   0.90738  2.58515  0.83466  2.44170     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     43   0.12676  3.50250  2.88081  3.41598     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     44   0.12676  3.50250  2.88081  3.41598     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
+     45   3.57332  0.11466  3.61663  2.93001     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01730  4.06577        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_fourm_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:20:22 2012
+NSEQ  9
+EFFN  3.555176
+CKSUM 2524060174
+STATS LOCAL MSV       -7.4231  0.71932
+STATS LOCAL VITERBI   -7.5972  0.71932
+STATS LOCAL FORWARD   -4.3998  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28371  1.60225  1.29933  1.39096
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  0.00000        *
+      1   1.07668  2.16651  2.20381  0.83398      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+      2   0.92278  1.50243  2.05951  1.37641      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+      3   0.13279  3.45189  2.84825  3.36042      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+      4   2.99686  3.65992  0.10956  3.57220      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+      5   3.51544  0.12080  3.56134  2.88856      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+      6   3.16150  2.64143  3.20685  0.16736      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+      7   0.13279  3.45189  2.84825  3.36042      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+      8   3.16150  2.64143  3.20685  0.16736      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+      9   0.13279  3.45189  2.84825  3.36042      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     10   3.16150  2.64143  3.20685  0.16736     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     11   3.51544  0.12080  3.56134  2.88856     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     12   2.99686  3.65992  0.10956  3.57220     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     13   2.99686  3.65992  0.10956  3.57220     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     14   3.16150  2.64143  3.20685  0.16736     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     15   2.99686  3.65992  0.10956  3.57220     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     16   2.99686  3.65992  0.10956  3.57220     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     17   0.13279  3.45189  2.84825  3.36042     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     18   3.16150  2.64143  3.20685  0.16736     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     19   3.51544  0.12080  3.56134  2.88856     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     20   0.13279  3.45189  2.84825  3.36042     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     21   3.51544  0.12080  3.56134  2.88856     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     22   3.16150  2.64143  3.20685  0.16736     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     23   3.16150  2.64143  3.20685  0.16736     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     24   2.99686  3.65992  0.10956  3.57220     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     25   2.99686  3.65992  0.10956  3.57220     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     26   3.51544  0.12080  3.56134  2.88856     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     27   3.16150  2.64143  3.20685  0.16736     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     28   3.51544  0.12080  3.56134  2.88856     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     29   2.99686  3.65992  0.10956  3.57220     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     30   3.16150  2.64143  3.20685  0.16736     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     31   0.13279  3.45189  2.84825  3.36042     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     32   2.99686  3.65992  0.10956  3.57220     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     33   0.13279  3.45189  2.84825  3.36042     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     34   3.16150  2.64143  3.20685  0.16736     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     35   3.51544  0.12080  3.56134  2.88856     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     36   2.99686  3.65992  0.10956  3.57220     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     37   0.13279  3.45189  2.84825  3.36042     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     38   3.16150  2.64143  3.20685  0.16736     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     39   2.99686  3.65992  0.10956  3.57220     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     40   0.13279  3.45189  2.84825  3.36042     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     41   0.13279  3.45189  2.84825  3.36042     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     42   2.99686  3.65992  0.10956  3.57220     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     43   0.13279  3.45189  2.84825  3.36042     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     44   0.13279  3.45189  2.84825  3.36042     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     45   3.51544  0.12080  3.56134  2.88856     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01784  4.03516        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_fourteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:22:54 2012
+NSEQ  4
+EFFN  3.199219
+CKSUM 535846906
+STATS LOCAL MSV       -8.1777  0.71932
+STATS LOCAL VITERBI   -7.7998  0.71932
+STATS LOCAL FORWARD   -4.0096  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33545  1.46596  1.25158  1.51390
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  0.00000        *
+      1   3.38655  0.13590  3.43796  2.79498      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      2   0.14734  3.33991  2.77563  3.23778      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      3   0.14734  3.33991  2.77563  3.23778      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      4   3.38655  0.13590  3.43796  2.79498      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      5   0.14734  3.33991  2.77563  3.23778      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      6   3.38655  0.13590  3.43796  2.79498      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      7   3.04806  2.56931  3.09775  0.18535      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      8   3.04806  2.56931  3.09775  0.18535      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      9   3.04806  2.56931  3.09775  0.18535      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     10   0.14734  3.33991  2.77563  3.23778     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     11   3.38655  0.13590  3.43796  2.79498     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     12   0.14734  3.33991  2.77563  3.23778     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     13   2.91917  3.54665  0.12176  3.44709     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     14   3.04806  2.56931  3.09775  0.18535     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     15   2.91917  3.54665  0.12176  3.44709     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     16   2.91917  3.54665  0.12176  3.44709     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     17   0.14734  3.33991  2.77563  3.23778     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     18   3.04806  2.56931  3.09775  0.18535     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     19   3.38655  0.13590  3.43796  2.79498     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     20   0.14734  3.33991  2.77563  3.23778     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     21   3.38655  0.13590  3.43796  2.79498     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     22   3.04806  2.56931  3.09775  0.18535     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     23   3.04806  2.56931  3.09775  0.18535     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     24   2.91917  3.54665  0.12176  3.44709     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     25   2.91917  3.54665  0.12176  3.44709     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     26   3.38655  0.13590  3.43796  2.79498     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     27   3.04806  2.56931  3.09775  0.18535     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     28   3.38655  0.13590  3.43796  2.79498     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     29   2.91917  3.54665  0.12176  3.44709     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     30   2.91917  3.54665  0.12176  3.44709     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     31   2.91917  3.54665  0.12176  3.44709     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     32   2.91917  3.54665  0.12176  3.44709     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     33   2.91917  3.54665  0.12176  3.44709     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     34   3.04806  2.56931  3.09775  0.18535     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     35   3.38655  0.13590  3.43796  2.79498     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     36   2.91917  3.54665  0.12176  3.44709     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     37   0.14734  3.33991  2.77563  3.23778     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     38   3.04806  2.56931  3.09775  0.18535     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     39   2.91917  3.54665  0.12176  3.44709     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     40   0.14734  3.33991  2.77563  3.23778     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     41   0.14734  3.33991  2.77563  3.23778     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     42   2.91917  3.54665  0.12176  3.44709     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     43   0.14734  3.33991  2.77563  3.23778     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     44   0.14734  3.33991  2.77563  3.23778     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     45   3.38655  0.13590  3.43796  2.79498     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01905  3.97014        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:22:01 2012
+NSEQ  23
+EFFN  3.501099
+CKSUM 1811260558
+STATS LOCAL MSV       -7.4154  0.71931
+STATS LOCAL VITERBI   -7.7564  0.71931
+STATS LOCAL FORWARD   -4.2320  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.31292  1.46337  1.22855  1.57601
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04324  4.04324  1.46634  0.26236  0.00000        *
+      1   0.45522  2.71836  1.49555  2.58254      1 - -
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+     43   2.34521  3.30668  0.19044  3.19570     43 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   3.49690  0.12285  3.54360  2.87520     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01801  4.02555        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_nineteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:26:00 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 209311102
+STATS LOCAL MSV       -7.6229  0.72769
+STATS LOCAL VITERBI   -8.1432  0.72769
+STATS LOCAL FORWARD   -3.4224  0.72769
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39541  1.40602  1.26392  1.49340
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
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+      2   2.81865  0.23582  2.88868  2.35662      2 - -
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+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_onea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:11:25 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3686762380
+STATS LOCAL MSV       -7.5082  0.72766
+STATS LOCAL VITERBI   -8.2855  0.72766
+STATS LOCAL FORWARD   -3.8286  0.72766
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.58214  1.52906  1.11769  1.38354
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_oneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:11:33 2012
+NSEQ  87
+EFFN  3.655975
+CKSUM 3510333141
+STATS LOCAL MSV       -7.4198  0.71932
+STATS LOCAL VITERBI   -7.6938  0.71932
+STATS LOCAL FORWARD   -4.3590  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54954  1.45282  1.13873  1.45449
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  0.00000        *
+      1   3.54908  0.11719  3.59347  2.91269      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+      2   0.12925  3.48127  2.86717  3.39267      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+      3   0.12925  3.48127  2.86717  3.39267      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+      4   3.54908  0.11719  3.59347  2.91269      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+      5   3.19176  2.66061  3.23592  0.16291      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+      6   2.47923  0.76813  2.55103  0.98267      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+      7   3.19176  2.66061  3.23592  0.16291      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+      8   2.07585  3.16738  0.24209  3.04801      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+      9   0.36015  2.66492  2.46116  1.91401      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     10   2.57159  3.47632  0.15254  3.37730     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     11   3.54908  0.11719  3.59347  2.91269     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     12   3.01675  3.68922  0.10664  3.60465     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     13   3.01675  3.68922  0.10664  3.60465     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     14   3.19176  2.66061  3.23592  0.16291     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     15   3.01675  3.68922  0.10664  3.60465     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     16   3.01675  3.68922  0.10664  3.60465     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     17   0.12925  3.48127  2.86717  3.39267     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     18   3.19176  2.66061  3.23592  0.16291     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     19   3.54908  0.11719  3.59347  2.91269     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     20   0.12925  3.48127  2.86717  3.39267     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     21   3.54908  0.11719  3.59347  2.91269     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     22   3.19176  2.66061  3.23592  0.16291     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     23   3.54908  0.11719  3.59347  2.91269     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     24   3.01675  3.68922  0.10664  3.60465     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     25   3.01675  3.68922  0.10664  3.60465     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     26   3.54908  0.11719  3.59347  2.91269     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     27   3.19176  2.66061  3.23592  0.16291     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     28   3.54908  0.11719  3.59347  2.91269     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     29   3.01675  3.68922  0.10664  3.60465     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     30   3.19176  2.66061  3.23592  0.16291     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     31   3.01675  3.68922  0.10664  3.60465     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     32   2.93056  2.06431  2.98531  0.26240     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     33   3.01675  3.68922  0.10664  3.60465     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     34   3.19176  2.66061  3.23592  0.16291     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     35   3.54908  0.11719  3.59347  2.91269     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     36   3.01675  3.68922  0.10664  3.60465     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     37   0.12925  3.48127  2.86717  3.39267     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     38   3.19176  2.66061  3.23592  0.16291     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     39   3.01675  3.68922  0.10664  3.60465     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     40   0.12925  3.48127  2.86717  3.39267     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     41   0.12925  3.48127  2.86717  3.39267     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     42   3.01675  3.68922  0.10664  3.60465     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     43   0.12925  3.48127  2.86717  3.39267     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     44   3.01675  3.68922  0.10664  3.60465     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
+     45   2.51322  0.66750  2.58481  1.10686     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01753  4.05282        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_onec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:11:44 2012
+NSEQ  10
+EFFN  3.227539
+CKSUM 1757016814
+STATS LOCAL MSV       -7.9412  0.71930
+STATS LOCAL VITERBI   -7.6707  0.71930
+STATS LOCAL FORWARD   -4.0766  0.71930
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40323  1.39009  1.31591  1.44005
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  0.00000        *
+      1   3.39741  0.13455  3.44837  2.80294      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      2   0.14605  3.34931  2.78177  3.24806      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      3   0.14605  3.34931  2.78177  3.24806      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      4   3.39741  0.13455  3.44837  2.80294      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      5   3.05748  2.57532  3.10682  0.18378      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      6   3.39741  0.13455  3.44837  2.80294      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      7   3.39741  0.13455  3.44837  2.80294      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      8   0.14605  3.34931  2.78177  3.24806      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      9   3.05748  2.57532  3.10682  0.18378      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     10   2.92582  3.55626  0.12066  3.45768     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     11   3.05748  2.57532  3.10682  0.18378     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     12   2.92582  3.55626  0.12066  3.45768     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     13   2.92582  3.55626  0.12066  3.45768     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     14   3.05748  2.57532  3.10682  0.18378     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     15   2.92582  3.55626  0.12066  3.45768     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     16   2.92582  3.55626  0.12066  3.45768     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     17   0.14605  3.34931  2.78177  3.24806     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     18   3.05748  2.57532  3.10682  0.18378     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     19   3.39741  0.13455  3.44837  2.80294     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     20   0.14605  3.34931  2.78177  3.24806     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     21   3.39741  0.13455  3.44837  2.80294     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     22   3.05748  2.57532  3.10682  0.18378     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     23   3.39741  0.13455  3.44837  2.80294     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     24   2.92582  3.55626  0.12066  3.45768     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     25   2.92582  3.55626  0.12066  3.45768     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     26   3.39741  0.13455  3.44837  2.80294     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     27   3.05748  2.57532  3.10682  0.18378     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     28   3.39741  0.13455  3.44837  2.80294     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     29   0.14605  3.34931  2.78177  3.24806     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     30   3.39741  0.13455  3.44837  2.80294     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     31   2.92582  3.55626  0.12066  3.45768     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     32   3.05748  2.57532  3.10682  0.18378     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     33   0.14605  3.34931  2.78177  3.24806     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     34   3.05748  2.57532  3.10682  0.18378     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     35   3.39741  0.13455  3.44837  2.80294     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     36   2.92582  3.55626  0.12066  3.45768     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     37   0.14605  3.34931  2.78177  3.24806     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     38   3.05748  2.57532  3.10682  0.18378     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     39   2.92582  3.55626  0.12066  3.45768     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     40   0.14605  3.34931  2.78177  3.24806     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     41   0.14605  3.34931  2.78177  3.24806     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     42   2.92582  3.55626  0.12066  3.45768     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     43   0.14605  3.34931  2.78177  3.24806     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     44   2.92582  3.55626  0.12066  3.45768     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     45   3.05748  2.57532  3.10682  0.18378     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01895  3.97547        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_oned_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:11:50 2012
+NSEQ  17
+EFFN  3.291260
+CKSUM 196763882
+STATS LOCAL MSV       -8.0536  0.71933
+STATS LOCAL VITERBI   -7.7352  0.71933
+STATS LOCAL FORWARD   -3.8207  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.38860  1.39070  1.27186  1.50794
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  0.00000        *
+      1   3.42145  0.13161  3.47140  2.82050      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+      2   0.14324  3.37015  2.79535  3.27086      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+      3   0.14324  3.37015  2.79535  3.27086      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+      4   3.42145  0.13161  3.47140  2.82050      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+      5   3.07841  2.58865  3.12696  0.18033      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+      6   3.42145  0.13161  3.47140  2.82050      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+      7   3.42145  0.13161  3.47140  2.82050      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+      8   0.14324  3.37015  2.79535  3.27086      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+      9   3.07841  2.58865  3.12696  0.18033      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     10   2.94046  3.57748  0.11829  3.48109     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     11   3.07841  2.58865  3.12696  0.18033     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     12   2.94046  3.57748  0.11829  3.48109     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     13   2.94046  3.57748  0.11829  3.48109     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     14   3.07841  2.58865  3.12696  0.18033     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     15   2.94046  3.57748  0.11829  3.48109     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     16   2.94046  3.57748  0.11829  3.48109     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     17   0.14324  3.37015  2.79535  3.27086     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     18   3.07841  2.58865  3.12696  0.18033     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     19   3.42145  0.13161  3.47140  2.82050     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     20   0.14324  3.37015  2.79535  3.27086     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     21   3.42145  0.13161  3.47140  2.82050     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     22   3.07841  2.58865  3.12696  0.18033     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     23   3.42145  0.13161  3.47140  2.82050     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     24   2.94046  3.57748  0.11829  3.48109     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     25   2.94046  3.57748  0.11829  3.48109     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     26   3.42145  0.13161  3.47140  2.82050     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     27   3.07841  2.58865  3.12696  0.18033     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     28   3.42145  0.13161  3.47140  2.82050     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     29   0.14324  3.37015  2.79535  3.27086     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     30   3.42145  0.13161  3.47140  2.82050     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     31   2.94046  3.57748  0.11829  3.48109     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     32   3.07841  2.58865  3.12696  0.18033     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     33   1.49206  2.71976  0.45663  2.57989     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     34   0.14324  3.37015  2.79535  3.27086     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     35   3.42145  0.13161  3.47140  2.82050     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     36   2.94046  3.57748  0.11829  3.48109     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     37   0.14324  3.37015  2.79535  3.27086     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     38   3.07841  2.58865  3.12696  0.18033     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     39   2.94046  3.57748  0.11829  3.48109     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     40   0.14324  3.37015  2.79535  3.27086     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     41   0.14324  3.37015  2.79535  3.27086     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     42   2.94046  3.57748  0.11829  3.48109     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     43   0.14324  3.37015  2.79535  3.27086     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     44   2.94046  3.57748  0.11829  3.48109     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
+     45   3.07841  2.58865  3.12696  0.18033     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01872  3.98736        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_onee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:11:59 2012
+NSEQ  34
+EFFN  3.482178
+CKSUM 4148185765
+STATS LOCAL MSV       -7.2926  0.71932
+STATS LOCAL VITERBI   -7.6395  0.71932
+STATS LOCAL FORWARD   -4.1414  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39466  1.43022  1.30565  1.41953
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  0.00000        *
+      1   3.22523  0.18506  3.28084  2.39033      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+      2   0.13550  3.42999  2.83413  3.33641      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+      3   0.13550  3.42999  2.83413  3.33641      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+      4   3.49032  0.12359  3.53732  2.87046      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+      5   3.13909  2.62721  3.18530  0.17075      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+      6   2.40864  0.46941  2.12525  1.80006      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+      7   2.74277  0.38496  2.81075  1.63490      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+      8   0.13550  3.42999  2.83413  3.33641      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+      9   3.13909  2.62721  3.18530  0.17075      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     10   2.98191  3.63797  0.11181  3.54791     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     11   3.13909  2.62721  3.18530  0.17075     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     12   2.98191  3.63797  0.11181  3.54791     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     13   2.98191  3.63797  0.11181  3.54791     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     14   3.13909  2.62721  3.18530  0.17075     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     15   2.98191  3.63797  0.11181  3.54791     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     16   2.98191  3.63797  0.11181  3.54791     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     17   0.13550  3.42999  2.83413  3.33641     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     18   3.13909  2.62721  3.18530  0.17075     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     19   3.49032  0.12359  3.53732  2.87046     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     20   0.13550  3.42999  2.83413  3.33641     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     21   3.49032  0.12359  3.53732  2.87046     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     22   3.13909  2.62721  3.18530  0.17075     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     23   3.49032  0.12359  3.53732  2.87046     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     24   2.98191  3.63797  0.11181  3.54791     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     25   2.98191  3.63797  0.11181  3.54791     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     26   3.49032  0.12359  3.53732  2.87046     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     27   3.13909  2.62721  3.18530  0.17075     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     28   3.49032  0.12359  3.53732  2.87046     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     29   0.13550  3.42999  2.83413  3.33641     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     30   3.49032  0.12359  3.53732  2.87046     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     31   2.98191  3.63797  0.11181  3.54791     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     32   2.96850  2.22834  3.02126  0.23298     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     33   0.13550  3.42999  2.83413  3.33641     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     34   3.13909  2.62721  3.18530  0.17075     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     35   3.49032  0.12359  3.53732  2.87046     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     36   2.98191  3.63797  0.11181  3.54791     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     37   0.13550  3.42999  2.83413  3.33641     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     38   3.13909  2.62721  3.18530  0.17075     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     39   2.98191  3.63797  0.11181  3.54791     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     40   0.13550  3.42999  2.83413  3.33641     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     41   0.13550  3.42999  2.83413  3.33641     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     42   2.98191  3.63797  0.11181  3.54791     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     43   0.13550  3.42999  2.83413  3.33641     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     44   2.98191  3.63797  0.11181  3.54791     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
+     45   3.13909  2.62721  3.18530  0.17075     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01808  4.02216        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_onef_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:12:05 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2429089339
+STATS LOCAL MSV       -7.4875  0.72740
+STATS LOCAL VITERBI   -8.1144  0.72740
+STATS LOCAL FORWARD   -3.7271  0.72740
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.51972  1.35153  1.16664  1.55604
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_oneg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:12:20 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3162836829
+STATS LOCAL MSV       -8.0248  0.72040
+STATS LOCAL VITERBI   -7.6955  0.72040
+STATS LOCAL FORWARD   -4.0851  0.72040
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22259  1.32320  1.60338  1.43533
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   0.15719  3.27118  2.73043  3.16274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   3.30705  0.14631  3.36166  2.73626     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   0.15719  3.27118  2.73043  3.16274     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_oneh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:12:26 2012
+NSEQ  68
+EFFN  3.332764
+CKSUM 148303286
+STATS LOCAL MSV       -8.0502  0.71933
+STATS LOCAL VITERBI   -7.6972  0.71933
+STATS LOCAL FORWARD   -4.3500  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47373  1.32059  1.25656  1.51722
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  0.00000        *
+      1   3.43682  0.12977  3.48612  2.83170      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+      2   0.14147  3.38348  2.80402  3.28545      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+      3   0.14147  3.38348  2.80402  3.28545      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+      4   3.43682  0.12977  3.48612  2.83170      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+      5   3.09186  2.59721  3.13989  0.17815      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+      6   3.43682  0.12977  3.48612  2.83170      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+      7   2.94039  2.24572  2.99390  0.23419      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+      8   2.69542  2.43082  2.35634  0.28801      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+      9   0.14147  3.38348  2.80402  3.28545      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     10   2.94977  3.59102  0.11680  3.49603     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     11   3.43682  0.12977  3.48612  2.83170     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     12   2.94977  3.59102  0.11680  3.49603     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     13   2.94977  3.59102  0.11680  3.49603     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     14   3.09186  2.59721  3.13989  0.17815     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     15   2.94977  3.59102  0.11680  3.49603     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     16   2.94977  3.59102  0.11680  3.49603     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     17   0.14147  3.38348  2.80402  3.28545     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     18   3.09186  2.59721  3.13989  0.17815     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     19   3.43682  0.12977  3.48612  2.83170     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     20   0.14147  3.38348  2.80402  3.28545     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     21   3.43682  0.12977  3.48612  2.83170     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     22   3.09186  2.59721  3.13989  0.17815     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     23   3.43682  0.12977  3.48612  2.83170     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     24   2.94977  3.59102  0.11680  3.49603     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     25   2.94977  3.59102  0.11680  3.49603     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     26   3.43682  0.12977  3.48612  2.83170     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     27   3.09186  2.59721  3.13989  0.17815     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     28   3.43682  0.12977  3.48612  2.83170     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     29   2.94977  3.59102  0.11680  3.49603     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     30   3.09186  2.59721  3.13989  0.17815     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     31   2.94977  3.59102  0.11680  3.49603     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     32   3.43682  0.12977  3.48612  2.83170     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     33   2.54151  3.38452  0.16292  3.27799     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     34   3.09186  2.59721  3.13989  0.17815     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     35   3.43682  0.12977  3.48612  2.83170     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     36   2.94977  3.59102  0.11680  3.49603     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     37   0.14147  3.38348  2.80402  3.28545     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     38   3.09186  2.59721  3.13989  0.17815     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     39   2.71953  3.14925  0.19713  2.65745     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     40   0.14147  3.38348  2.80402  3.28545     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     41   0.14147  3.38348  2.80402  3.28545     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     42   2.94977  3.59102  0.11680  3.49603     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     43   0.14147  3.38348  2.80402  3.28545     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     44   0.20263  3.17160  2.35722  3.06182     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
+     45   3.43682  0.12977  3.48612  2.83170     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01858  3.99503        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_onei_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:12:35 2012
+NSEQ  10
+EFFN  3.247070
+CKSUM 3206921348
+STATS LOCAL MSV       -8.2213  0.71932
+STATS LOCAL VITERBI   -7.8415  0.71932
+STATS LOCAL FORWARD   -3.8688  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.46632  1.46690  1.10152  1.57880
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  0.00000        *
+      1   3.40484  0.13363  3.45549  2.80837      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      2   0.14518  3.35575  2.78597  3.25510      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      3   0.14518  3.35575  2.78597  3.25510      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      4   3.40484  0.13363  3.45549  2.80837      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      5   3.06393  2.57943  3.11303  0.18271      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      6   3.40484  0.13363  3.45549  2.80837      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      7   3.06393  2.57943  3.11303  0.18271      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      8   0.14518  3.35575  2.78597  3.25510      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+      9   0.14518  3.35575  2.78597  3.25510      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     10   2.93035  3.56282  0.11992  3.46492     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     11   3.06393  2.57943  3.11303  0.18271     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     12   2.93035  3.56282  0.11992  3.46492     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     13   2.93035  3.56282  0.11992  3.46492     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     14   3.06393  2.57943  3.11303  0.18271     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     15   2.93035  3.56282  0.11992  3.46492     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     16   2.93035  3.56282  0.11992  3.46492     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     17   0.14518  3.35575  2.78597  3.25510     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     18   3.06393  2.57943  3.11303  0.18271     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     19   3.40484  0.13363  3.45549  2.80837     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     20   0.14518  3.35575  2.78597  3.25510     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     21   3.40484  0.13363  3.45549  2.80837     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     22   3.06393  2.57943  3.11303  0.18271     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     23   3.40484  0.13363  3.45549  2.80837     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     24   2.93035  3.56282  0.11992  3.46492     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     25   2.93035  3.56282  0.11992  3.46492     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     26   3.40484  0.13363  3.45549  2.80837     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     27   3.06393  2.57943  3.11303  0.18271     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     28   3.40484  0.13363  3.45549  2.80837     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     29   2.93035  3.56282  0.11992  3.46492     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     30   2.32215  2.52809  0.43127  1.75769     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     31   2.93035  3.56282  0.11992  3.46492     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     32   2.93035  3.56282  0.11992  3.46492     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     33   2.93035  3.56282  0.11992  3.46492     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     34   3.06393  2.57943  3.11303  0.18271     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     35   3.40484  0.13363  3.45549  2.80837     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     36   2.93035  3.56282  0.11992  3.46492     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     37   0.14518  3.35575  2.78597  3.25510     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     38   3.06393  2.57943  3.11303  0.18271     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     39   2.93035  3.56282  0.11992  3.46492     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     40   0.14518  3.35575  2.78597  3.25510     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     41   0.14518  3.35575  2.78597  3.25510     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     42   2.93035  3.56282  0.11992  3.46492     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     43   0.14518  3.35575  2.78597  3.25510     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     44   2.93035  3.56282  0.11992  3.46492     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
+     45   3.40484  0.13363  3.45549  2.80837     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97913        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_onej_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:12:40 2012
+NSEQ  25
+EFFN  3.768921
+CKSUM 1958450389
+STATS LOCAL MSV       -6.8992  0.71931
+STATS LOCAL VITERBI   -7.5325  0.71931
+STATS LOCAL FORWARD   -4.3956  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.57212  1.38838  1.16636  1.46353
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  0.00000        *
+      1   2.48307  0.88584  2.55439  0.85237      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+      2   2.50922  1.10611  2.57909  0.66946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+      3   0.12554  3.51306  2.88759  3.42758      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+      4   3.58536  0.11343  3.62811  2.93859      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+      5   3.22473  2.68150  3.26760  0.15820      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+      6   3.58536  0.11343  3.62811  2.93859      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+      7   3.22473  2.68150  3.26760  0.15820      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+      8   0.12554  3.51306  2.88759  3.42758      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+      9   0.60591  2.33919  1.63915  1.80867      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     10   3.03806  3.72071  0.10359  3.63957     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     11   3.58536  0.11343  3.62811  2.93859     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     12   3.03806  3.72071  0.10359  3.63957     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     13   3.03806  3.72071  0.10359  3.63957     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     14   3.22473  2.68150  3.26760  0.15820     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     15   3.03806  3.72071  0.10359  3.63957     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     16   3.03806  3.72071  0.10359  3.63957     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     17   0.12554  3.51306  2.88759  3.42758     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     18   3.22473  2.68150  3.26760  0.15820     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     19   3.58536  0.11343  3.62811  2.93859     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     20   0.12554  3.51306  2.88759  3.42758     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     21   3.58536  0.11343  3.62811  2.93859     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     22   3.22473  2.68150  3.26760  0.15820     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     23   3.58536  0.11343  3.62811  2.93859     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     24   3.03806  3.72071  0.10359  3.63957     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     25   3.03806  3.72071  0.10359  3.63957     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     26   3.58536  0.11343  3.62811  2.93859     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     27   3.22473  2.68150  3.26760  0.15820     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     28   3.58536  0.11343  3.62811  2.93859     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     29   3.03806  3.72071  0.10359  3.63957     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     30   3.22473  2.68150  3.26760  0.15820     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     31   3.03806  3.72071  0.10359  3.63957     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     32   2.06075  1.37151  1.50789  0.92245     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     33   3.03806  3.72071  0.10359  3.63957     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     34   3.22473  2.68150  3.26760  0.15820     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     35   3.58536  0.11343  3.62811  2.93859     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     36   3.03806  3.72071  0.10359  3.63957     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     37   0.12554  3.51306  2.88759  3.42758     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     38   3.22473  2.68150  3.26760  0.15820     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     39   3.03806  3.72071  0.10359  3.63957     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     40   0.12554  3.51306  2.88759  3.42758     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     41   0.12554  3.51306  2.88759  3.42758     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     42   3.03806  3.72071  0.10359  3.63957     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     43   0.12554  3.51306  2.88759  3.42758     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     44   3.03806  3.72071  0.10359  3.63957     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
+     45   3.58536  0.11343  3.62811  2.93859     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01719  4.07226        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_onek_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:12:45 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1530221864
+STATS LOCAL MSV       -7.9709  0.72006
+STATS LOCAL VITERBI   -7.7118  0.72006
+STATS LOCAL FORWARD   -4.1068  0.72006
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54975  1.26730  1.25893  1.50439
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   3.30705  0.14631  3.36166  2.73626     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.86982  3.47591  0.13017  3.36931     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   0.15719  3.27118  2.73043  3.16274     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.86982  3.47591  0.13017  3.36931     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_onel_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:12:49 2012
+NSEQ  12
+EFFN  3.231445
+CKSUM 3595403650
+STATS LOCAL MSV       -7.9439  0.71932
+STATS LOCAL VITERBI   -7.6666  0.71932
+STATS LOCAL FORWARD   -4.3889  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.56223  1.32606  1.19240  1.50816
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  0.00000        *
+      1   3.39890  0.13436  3.44980  2.80403      1 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     43   0.14587  3.35060  2.78262  3.24947     43 - -
+          1.38629  1.38629  1.38629  1.38629
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+     44   2.92673  3.55757  0.12052  3.45913     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     45   3.39890  0.13436  3.44980  2.80403     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01893  3.97621        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_onem_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:12:55 2012
+NSEQ  67
+EFFN  3.275574
+CKSUM 1052117769
+STATS LOCAL MSV       -8.1070  0.71931
+STATS LOCAL VITERBI   -7.7354  0.71931
+STATS LOCAL FORWARD   -4.2705  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54402  1.45383  1.14014  1.45657
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  0.00000        *
+      1   2.60511  1.60359  2.67029  0.42205      1 - -
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+      2   0.14392  3.36506  2.79204  3.26529      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+      3   0.14392  3.36506  2.79204  3.26529      3 - -
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+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+      4   3.41558  0.13232  3.46578  2.81622      4 - -
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+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     43   0.14392  3.36506  2.79204  3.26529     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     44   2.93690  3.57231  0.11886  3.47538     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
+     45   3.41558  0.13232  3.46578  2.81622     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01878  3.98445        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_onen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:13:00 2012
+NSEQ  36
+EFFN  3.511230
+CKSUM 2085619721
+STATS LOCAL MSV       -7.2493  0.71933
+STATS LOCAL VITERBI   -7.5654  0.71933
+STATS LOCAL FORWARD   -4.2751  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.50964  1.42548  1.18575  1.45628
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  0.00000        *
+      1   2.45497  0.77017  2.52710  0.99072      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+      2   0.85115  2.19026  2.18289  1.05419      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+      3   0.13441  3.43877  2.83979  3.34604      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+      4   3.50040  0.12246  3.54695  2.87773      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+      5   3.14806  2.63290  3.19393  0.16938      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+      6   3.50040  0.12246  3.54695  2.87773      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+      7   3.14806  2.63290  3.19393  0.16938      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+      8   0.13441  3.43877  2.83979  3.34604      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+      9   0.13441  3.43877  2.83979  3.34604      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     10   2.98791  3.64678  0.11090  3.55766     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     11   3.50040  0.12246  3.54695  2.87773     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     12   2.98791  3.64678  0.11090  3.55766     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     13   2.98791  3.64678  0.11090  3.55766     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     14   3.14806  2.63290  3.19393  0.16938     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     15   2.98791  3.64678  0.11090  3.55766     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     16   2.98791  3.64678  0.11090  3.55766     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     17   0.13441  3.43877  2.83979  3.34604     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     18   3.14806  2.63290  3.19393  0.16938     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     19   3.50040  0.12246  3.54695  2.87773     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     20   0.13441  3.43877  2.83979  3.34604     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     21   3.50040  0.12246  3.54695  2.87773     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     22   3.14806  2.63290  3.19393  0.16938     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     23   3.50040  0.12246  3.54695  2.87773     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     24   2.98791  3.64678  0.11090  3.55766     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     25   2.98791  3.64678  0.11090  3.55766     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     26   3.21387  0.18937  3.26983  2.36118     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     27   3.14806  2.63290  3.19393  0.16938     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     28   3.50040  0.12246  3.54695  2.87773     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     29   2.98791  3.64678  0.11090  3.55766     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     30   3.14806  2.63290  3.19393  0.16938     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     31   2.98791  3.64678  0.11090  3.55766     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     32   2.96561  2.20742  3.01855  0.23621     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     33   2.98791  3.64678  0.11090  3.55766     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     34   3.14806  2.63290  3.19393  0.16938     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     35   3.50040  0.12246  3.54695  2.87773     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     36   2.98791  3.64678  0.11090  3.55766     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     37   0.13441  3.43877  2.83979  3.34604     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     38   3.14806  2.63290  3.19393  0.16938     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     39   2.98791  3.64678  0.11090  3.55766     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     40   0.13441  3.43877  2.83979  3.34604     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     41   0.13441  3.43877  2.83979  3.34604     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     42   2.98791  3.64678  0.11090  3.55766     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     43   0.13441  3.43877  2.83979  3.34604     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     44   2.98791  3.64678  0.11090  3.55766     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
+     45   3.50040  0.12246  3.54695  2.87773     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01798  4.02736        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_oneo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:13:05 2012
+NSEQ  4
+EFFN  3.183594
+CKSUM 3162319453
+STATS LOCAL MSV       -7.9834  0.71933
+STATS LOCAL VITERBI   -7.8581  0.71933
+STATS LOCAL FORWARD   -4.2189  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62781  1.39287  1.14320  1.44187
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  0.00000        *
+      1   0.14807  3.33468  2.77222  3.23207      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      2   3.38051  0.13666  3.43217  2.79055      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      3   0.14807  3.33468  2.77222  3.23207      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      4   3.38051  0.13666  3.43217  2.79055      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      5   3.04283  2.56598  3.09273  0.18624      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      6   3.38051  0.13666  3.43217  2.79055      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      7   3.04283  2.56598  3.09273  0.18624      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      8   3.04283  2.56598  3.09273  0.18624      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      9   2.91546  3.54130  0.12237  3.44120      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     10   2.91546  3.54130  0.12237  3.44120     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     11   3.38051  0.13666  3.43217  2.79055     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     12   2.91546  3.54130  0.12237  3.44120     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     13   2.91546  3.54130  0.12237  3.44120     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     14   3.04283  2.56598  3.09273  0.18624     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     15   2.91546  3.54130  0.12237  3.44120     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     16   2.91546  3.54130  0.12237  3.44120     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     17   0.14807  3.33468  2.77222  3.23207     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     18   3.04283  2.56598  3.09273  0.18624     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     19   3.38051  0.13666  3.43217  2.79055     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     20   0.14807  3.33468  2.77222  3.23207     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     21   3.38051  0.13666  3.43217  2.79055     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     22   3.04283  2.56598  3.09273  0.18624     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     23   3.38051  0.13666  3.43217  2.79055     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     24   2.91546  3.54130  0.12237  3.44120     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     25   2.91546  3.54130  0.12237  3.44120     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     26   3.04283  2.56598  3.09273  0.18624     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     27   3.04283  2.56598  3.09273  0.18624     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     28   3.38051  0.13666  3.43217  2.79055     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     29   2.91546  3.54130  0.12237  3.44120     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     30   3.04283  2.56598  3.09273  0.18624     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     31   2.91546  3.54130  0.12237  3.44120     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     32   3.38051  0.13666  3.43217  2.79055     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     33   2.91546  3.54130  0.12237  3.44120     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     34   3.04283  2.56598  3.09273  0.18624     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     35   3.38051  0.13666  3.43217  2.79055     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     36   2.91546  3.54130  0.12237  3.44120     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     37   0.14807  3.33468  2.77222  3.23207     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     38   3.04283  2.56598  3.09273  0.18624     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     39   2.91546  3.54130  0.12237  3.44120     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     40   0.14807  3.33468  2.77222  3.23207     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     41   0.14807  3.33468  2.77222  3.23207     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     42   2.91546  3.54130  0.12237  3.44120     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     43   0.14807  3.33468  2.77222  3.23207     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     44   2.91546  3.54130  0.12237  3.44120     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     45   3.38051  0.13666  3.43217  2.79055     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01911  3.96719        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_onep_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:13:11 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1940936314
+STATS LOCAL MSV       -7.3708  0.72759
+STATS LOCAL VITERBI   -8.1974  0.72759
+STATS LOCAL FORWARD   -3.7751  0.72759
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.52005  1.34721  1.21583  1.49224
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_oneq_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:13:16 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3036652137
+STATS LOCAL MSV       -7.5069  0.72803
+STATS LOCAL VITERBI   -8.2859  0.72803
+STATS LOCAL FORWARD   -3.3219  0.72803
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.37220  1.35028  1.24302  1.61559
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.92825  2.28391  0.95698  2.13014      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   0.23862  2.84929  2.43386  2.70756     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_oner_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:13:21 2012
+NSEQ  8
+EFFN  3.199219
+CKSUM 1827277924
+STATS LOCAL MSV       -8.0167  0.71933
+STATS LOCAL VITERBI   -7.6622  0.71933
+STATS LOCAL FORWARD   -4.3529  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72054  1.38848  1.14415  1.37404
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  0.00000        *
+      1   3.38655  0.13590  3.43796  2.79498      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      2   3.04806  2.56931  3.09775  0.18535      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      3   0.14734  3.33991  2.77563  3.23778      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      4   3.38655  0.13590  3.43796  2.79498      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      5   3.04806  2.56931  3.09775  0.18535      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      6   3.38655  0.13590  3.43796  2.79498      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      7   3.04806  2.56931  3.09775  0.18535      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      8   2.91917  3.54665  0.12176  3.44709      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      9   3.04806  2.56931  3.09775  0.18535      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     10   2.91917  3.54665  0.12176  3.44709     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     11   3.38655  0.13590  3.43796  2.79498     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     12   2.91917  3.54665  0.12176  3.44709     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     13   2.91917  3.54665  0.12176  3.44709     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     14   3.04806  2.56931  3.09775  0.18535     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     15   2.91917  3.54665  0.12176  3.44709     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     16   2.91917  3.54665  0.12176  3.44709     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     17   0.14734  3.33991  2.77563  3.23778     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     18   3.04806  2.56931  3.09775  0.18535     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     19   3.38655  0.13590  3.43796  2.79498     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     20   0.14734  3.33991  2.77563  3.23778     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     21   3.38655  0.13590  3.43796  2.79498     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     22   3.04806  2.56931  3.09775  0.18535     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     23   3.38655  0.13590  3.43796  2.79498     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     24   2.91917  3.54665  0.12176  3.44709     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     25   2.91917  3.54665  0.12176  3.44709     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     26   3.38655  0.13590  3.43796  2.79498     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     27   3.04806  2.56931  3.09775  0.18535     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     28   3.38655  0.13590  3.43796  2.79498     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     29   2.91917  3.54665  0.12176  3.44709     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     30   3.04806  2.56931  3.09775  0.18535     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     31   2.91917  3.54665  0.12176  3.44709     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     32   3.04806  2.56931  3.09775  0.18535     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     33   2.91917  3.54665  0.12176  3.44709     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     34   3.04806  2.56931  3.09775  0.18535     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     35   3.38655  0.13590  3.43796  2.79498     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     36   2.91917  3.54665  0.12176  3.44709     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     37   0.14734  3.33991  2.77563  3.23778     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     38   3.04806  2.56931  3.09775  0.18535     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     39   2.91917  3.54665  0.12176  3.44709     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     40   0.14734  3.33991  2.77563  3.23778     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     41   0.14734  3.33991  2.77563  3.23778     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     42   2.91917  3.54665  0.12176  3.44709     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     43   0.14734  3.33991  2.77563  3.23778     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     44   2.91917  3.54665  0.12176  3.44709     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     45   3.38655  0.13590  3.43796  2.79498     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01905  3.97014        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_ones_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:13:29 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3483693243
+STATS LOCAL MSV       -7.4492  0.72782
+STATS LOCAL VITERBI   -8.1187  0.72782
+STATS LOCAL FORWARD   -3.4857  0.72782
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29189  1.29167  1.43650  1.54798
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   0.23862  2.84929  2.43386  2.70756     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_onet_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:13:36 2012
+NSEQ  19
+EFFN  3.186768
+CKSUM 722966639
+STATS LOCAL MSV       -8.0861  0.71934
+STATS LOCAL VITERBI   -7.7379  0.71934
+STATS LOCAL FORWARD   -4.2531  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54585  1.46628  1.14119  1.44118
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  0.00000        *
+      1   3.04390  2.56666  3.09375  0.18606      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+      2   0.14792  3.33575  2.77291  3.23323      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+      3   0.14792  3.33575  2.77291  3.23323      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+      4   3.38174  0.13651  3.43335  2.79145      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+      5   3.04390  2.56666  3.09375  0.18606      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+      6   3.04390  2.56666  3.09375  0.18606      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+      7   3.04390  2.56666  3.09375  0.18606      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+      8   2.91622  3.54239  0.12225  3.44240      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+      9   0.14792  3.33575  2.77291  3.23323      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     10   2.91622  3.54239  0.12225  3.44240     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     11   3.38174  0.13651  3.43335  2.79145     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     12   2.91622  3.54239  0.12225  3.44240     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     13   2.91622  3.54239  0.12225  3.44240     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     14   3.04390  2.56666  3.09375  0.18606     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     15   2.91622  3.54239  0.12225  3.44240     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     16   2.91622  3.54239  0.12225  3.44240     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     17   0.14792  3.33575  2.77291  3.23323     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     18   3.04390  2.56666  3.09375  0.18606     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     19   3.38174  0.13651  3.43335  2.79145     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     20   0.14792  3.33575  2.77291  3.23323     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     21   3.38174  0.13651  3.43335  2.79145     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     22   3.04390  2.56666  3.09375  0.18606     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     23   3.38174  0.13651  3.43335  2.79145     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     24   2.91622  3.54239  0.12225  3.44240     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     25   2.91622  3.54239  0.12225  3.44240     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     26   3.38174  0.13651  3.43335  2.79145     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     27   3.04390  2.56666  3.09375  0.18606     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     28   3.38174  0.13651  3.43335  2.79145     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     29   2.91622  3.54239  0.12225  3.44240     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     30   3.04390  2.56666  3.09375  0.18606     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     31   2.91622  3.54239  0.12225  3.44240     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     32   3.38174  0.13651  3.43335  2.79145     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     33   2.91622  3.54239  0.12225  3.44240     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     34   3.04390  2.56666  3.09375  0.18606     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     35   3.38174  0.13651  3.43335  2.79145     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     36   2.91622  3.54239  0.12225  3.44240     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     37   0.14792  3.33575  2.77291  3.23323     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     38   3.04390  2.56666  3.09375  0.18606     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     39   2.91622  3.54239  0.12225  3.44240     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     40   0.14792  3.33575  2.77291  3.23323     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     41   0.14792  3.33575  2.77291  3.23323     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     42   2.91622  3.54239  0.12225  3.44240     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     43   0.14792  3.33575  2.77291  3.23323     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     44   2.91622  3.54239  0.12225  3.44240     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
+     45   3.38174  0.13651  3.43335  2.79145     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01910  3.96779        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_sevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:21:03 2012
+NSEQ  33
+EFFN  3.226685
+CKSUM 3895814705
+STATS LOCAL MSV       -8.1231  0.71932
+STATS LOCAL VITERBI   -7.7927  0.71932
+STATS LOCAL FORWARD   -4.2040  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26742  1.47087  1.25669  1.58904
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  0.00000        *
+      1   0.14609  3.34903  2.78159  3.24776      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+      2   0.14609  3.34903  2.78159  3.24776      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+      3   0.14609  3.34903  2.78159  3.24776      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+      4   3.39708  0.13459  3.44806  2.80270      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+      5   3.39708  0.13459  3.44806  2.80270      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+      6   3.05719  2.57514  3.10654  0.18382      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+      7   3.05719  2.57514  3.10654  0.18382      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+      8   0.14609  3.34903  2.78159  3.24776      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+      9   0.14609  3.34903  2.78159  3.24776      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     10   0.14609  3.34903  2.78159  3.24776     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     11   3.39708  0.13459  3.44806  2.80270     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     12   2.18462  3.13998  0.22900  3.01864     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     13   2.92562  3.55597  0.12070  3.45736     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     14   2.92562  3.55597  0.12070  3.45736     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     15   2.92562  3.55597  0.12070  3.45736     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     16   2.92562  3.55597  0.12070  3.45736     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     17   0.14609  3.34903  2.78159  3.24776     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     18   3.05719  2.57514  3.10654  0.18382     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     19   3.39708  0.13459  3.44806  2.80270     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     20   0.14609  3.34903  2.78159  3.24776     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     21   3.39708  0.13459  3.44806  2.80270     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     22   3.05719  2.57514  3.10654  0.18382     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     23   3.05719  2.57514  3.10654  0.18382     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     24   2.92562  3.55597  0.12070  3.45736     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     25   2.92562  3.55597  0.12070  3.45736     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     26   3.39708  0.13459  3.44806  2.80270     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     27   3.05719  2.57514  3.10654  0.18382     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     28   3.39708  0.13459  3.44806  2.80270     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     29   0.14609  3.34903  2.78159  3.24776     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     30   3.05719  2.57514  3.10654  0.18382     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     31   2.92562  3.55597  0.12070  3.45736     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     32   2.92562  3.55597  0.12070  3.45736     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     33   2.92562  3.55597  0.12070  3.45736     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     34   3.05719  2.57514  3.10654  0.18382     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     35   3.39708  0.13459  3.44806  2.80270     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     36   2.92562  3.55597  0.12070  3.45736     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     37   0.14609  3.34903  2.78159  3.24776     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     38   3.05719  2.57514  3.10654  0.18382     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     39   2.92562  3.55597  0.12070  3.45736     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     40   0.14609  3.34903  2.78159  3.24776     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     41   0.14609  3.34903  2.78159  3.24776     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     42   2.92562  3.55597  0.12070  3.45736     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     43   0.14609  3.34903  2.78159  3.24776     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     44   3.39708  0.13459  3.44806  2.80270     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
+     45   3.39708  0.13459  3.44806  2.80270     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01895  3.97531        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_sevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:21:10 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1225994552
+STATS LOCAL MSV       -7.9561  0.72003
+STATS LOCAL VITERBI   -7.8167  0.72003
+STATS LOCAL FORWARD   -3.8315  0.72003
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33729  1.40049  1.25326  1.58281
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   3.30705  0.14631  3.36166  2.73626      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.86982  3.47591  0.13017  3.36931     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   0.15719  3.27118  2.73043  3.16274     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.86982  3.47591  0.13017  3.36931     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_seventeen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:25:19 2012
+NSEQ  37
+EFFN  3.130005
+CKSUM 2559124236
+STATS LOCAL MSV       -8.0966  0.71931
+STATS LOCAL VITERBI   -7.8628  0.71931
+STATS LOCAL FORWARD   -3.7948  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33527  1.34010  1.19529  1.75749
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  0.00000        *
+      1   0.15061  3.31655  2.76033  3.21225      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+      2   0.15061  3.31655  2.76033  3.21225      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+      3   0.15061  3.31655  2.76033  3.21225      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+      4   3.35955  0.13934  3.41207  2.77513      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+      5   3.35955  0.13934  3.41207  2.77513      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+      6   3.35955  0.13934  3.41207  2.77513      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+      7   3.02474  2.55443  3.07532  0.18932      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+      8   0.15061  3.31655  2.76033  3.21225      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+      9   2.90255  3.52270  0.12453  3.42073      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     10   2.90255  3.52270  0.12453  3.42073     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     11   3.35955  0.13934  3.41207  2.77513     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     12   0.15061  3.31655  2.76033  3.21225     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     13   2.90255  3.52270  0.12453  3.42073     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     14   2.90255  3.52270  0.12453  3.42073     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     15   2.90255  3.52270  0.12453  3.42073     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     16   2.90255  3.52270  0.12453  3.42073     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     17   0.15061  3.31655  2.76033  3.21225     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     18   3.02474  2.55443  3.07532  0.18932     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     19   3.35955  0.13934  3.41207  2.77513     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     20   0.15061  3.31655  2.76033  3.21225     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     21   3.35955  0.13934  3.41207  2.77513     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     22   3.02474  2.55443  3.07532  0.18932     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     23   3.35955  0.13934  3.41207  2.77513     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     24   2.90255  3.52270  0.12453  3.42073     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     25   2.90255  3.52270  0.12453  3.42073     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     26   3.35955  0.13934  3.41207  2.77513     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     27   3.02474  2.55443  3.07532  0.18932     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     28   3.35955  0.13934  3.41207  2.77513     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     29   2.90255  3.52270  0.12453  3.42073     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     30   3.02474  2.55443  3.07532  0.18932     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     31   2.90255  3.52270  0.12453  3.42073     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     32   2.90255  3.52270  0.12453  3.42073     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     33   0.15061  3.31655  2.76033  3.21225     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     34   3.02474  2.55443  3.07532  0.18932     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     35   3.35955  0.13934  3.41207  2.77513     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     36   2.90255  3.52270  0.12453  3.42073     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     37   0.15061  3.31655  2.76033  3.21225     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     38   3.02474  2.55443  3.07532  0.18932     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     39   2.90255  3.52270  0.12453  3.42073     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     40   0.15061  3.31655  2.76033  3.21225     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     41   0.15061  3.31655  2.76033  3.21225     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     42   2.90255  3.52270  0.12453  3.42073     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     43   0.15061  3.31655  2.76033  3.21225     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     44   3.35955  0.13934  3.41207  2.77513     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
+     45   3.35955  0.13934  3.41207  2.77513     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01931  3.95700        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:20:50 2012
+NSEQ  14
+EFFN  3.318848
+CKSUM 2983350357
+STATS LOCAL MSV       -8.1192  0.71933
+STATS LOCAL VITERBI   -7.6210  0.71933
+STATS LOCAL FORWARD   -3.8444  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23470  1.39154  1.29524  1.67903
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  0.00000        *
+      1   0.14206  3.37903  2.80113  3.28058      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+      2   3.43169  0.13038  3.48121  2.82797      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+      3   0.14206  3.37903  2.80113  3.28058      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+      4   2.76265  1.89290  2.82268  0.31911      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+      5   3.43169  0.13038  3.48121  2.82797      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+      6   3.43169  0.13038  3.48121  2.82797      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+      7   3.08737  2.59435  3.13557  0.17888      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+      8   0.14206  3.37903  2.80113  3.28058      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+      9   2.94667  3.58651  0.11730  3.49105      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     10   0.14206  3.37903  2.80113  3.28058     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     11   3.43169  0.13038  3.48121  2.82797     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     12   0.14206  3.37903  2.80113  3.28058     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     13   2.94667  3.58651  0.11730  3.49105     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     14   2.94667  3.58651  0.11730  3.49105     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     15   2.94667  3.58651  0.11730  3.49105     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     16   2.94667  3.58651  0.11730  3.49105     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     17   0.14206  3.37903  2.80113  3.28058     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     18   3.08737  2.59435  3.13557  0.17888     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     19   3.43169  0.13038  3.48121  2.82797     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     20   0.14206  3.37903  2.80113  3.28058     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     21   3.43169  0.13038  3.48121  2.82797     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     22   3.08737  2.59435  3.13557  0.17888     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     23   0.14206  3.37903  2.80113  3.28058     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     24   2.94667  3.58651  0.11730  3.49105     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     25   2.94667  3.58651  0.11730  3.49105     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     26   3.43169  0.13038  3.48121  2.82797     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     27   3.08737  2.59435  3.13557  0.17888     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     28   3.43169  0.13038  3.48121  2.82797     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     29   0.14206  3.37903  2.80113  3.28058     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     30   3.08737  2.59435  3.13557  0.17888     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     31   2.94667  3.58651  0.11730  3.49105     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     32   2.94667  3.58651  0.11730  3.49105     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     33   0.55410  2.60362  1.32347  2.46278     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     34   3.08737  2.59435  3.13557  0.17888     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     35   3.43169  0.13038  3.48121  2.82797     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     36   2.94667  3.58651  0.11730  3.49105     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     37   0.14206  3.37903  2.80113  3.28058     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     38   3.08737  2.59435  3.13557  0.17888     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     39   2.94667  3.58651  0.11730  3.49105     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     40   0.14206  3.37903  2.80113  3.28058     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     41   0.14206  3.37903  2.80113  3.28058     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     42   2.94667  3.58651  0.11730  3.49105     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     43   0.14206  3.37903  2.80113  3.28058     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     44   3.43169  0.13038  3.48121  2.82797     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
+     45   3.43169  0.13038  3.48121  2.82797     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01863  3.99247        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_sixteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:25:09 2012
+NSEQ  11
+EFFN  3.279053
+CKSUM 3971834909
+STATS LOCAL MSV       -8.0429  0.71932
+STATS LOCAL VITERBI   -7.6961  0.71932
+STATS LOCAL FORWARD   -4.2466  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.44601  1.30717  1.19132  1.66028
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  0.00000        *
+      1   1.03707  0.94572  2.13766  1.97200      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+      2   0.14377  3.36619  2.79278  3.26653      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+      3   0.14377  3.36619  2.79278  3.26653      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+      4   3.41689  0.13216  3.46703  2.81717      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+      5   3.41689  0.13216  3.46703  2.81717      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+      6   3.41689  0.13216  3.46703  2.81717      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+      7   3.41689  0.13216  3.46703  2.81717      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+      8   2.93769  3.57346  0.11874  3.47665      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+      9   0.14377  3.36619  2.79278  3.26653      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     10   0.14377  3.36619  2.79278  3.26653     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     11   3.41689  0.13216  3.46703  2.81717     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     12   2.93769  3.57346  0.11874  3.47665     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     13   2.93769  3.57346  0.11874  3.47665     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     14   3.07443  2.58612  3.12312  0.18098     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     15   2.93769  3.57346  0.11874  3.47665     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     16   2.93769  3.57346  0.11874  3.47665     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     17   0.14377  3.36619  2.79278  3.26653     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     18   3.07443  2.58612  3.12312  0.18098     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     19   3.41689  0.13216  3.46703  2.81717     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     20   0.14377  3.36619  2.79278  3.26653     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     21   3.41689  0.13216  3.46703  2.81717     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     22   3.07443  2.58612  3.12312  0.18098     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     23   3.07443  2.58612  3.12312  0.18098     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     24   2.93769  3.57346  0.11874  3.47665     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     25   2.93769  3.57346  0.11874  3.47665     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     26   3.41689  0.13216  3.46703  2.81717     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     27   3.07443  2.58612  3.12312  0.18098     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     28   3.41689  0.13216  3.46703  2.81717     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     29   2.93769  3.57346  0.11874  3.47665     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     30   3.07443  2.58612  3.12312  0.18098     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     31   2.93769  3.57346  0.11874  3.47665     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     32   2.93769  3.57346  0.11874  3.47665     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     33   2.93769  3.57346  0.11874  3.47665     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     34   3.07443  2.58612  3.12312  0.18098     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     35   3.41689  0.13216  3.46703  2.81717     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     36   2.93769  3.57346  0.11874  3.47665     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     37   0.14377  3.36619  2.79278  3.26653     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     38   3.07443  2.58612  3.12312  0.18098     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     39   2.93769  3.57346  0.11874  3.47665     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     40   0.14377  3.36619  2.79278  3.26653     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     41   0.14377  3.36619  2.79278  3.26653     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     42   2.93769  3.57346  0.11874  3.47665     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     43   0.14377  3.36619  2.79278  3.26653     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     44   3.41689  0.13216  3.46703  2.81717     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     45   3.41689  0.13216  3.46703  2.81717     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01877  3.98510        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_ten_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:22:10 2012
+NSEQ  7
+EFFN  3.209473
+CKSUM 4051946853
+STATS LOCAL MSV       -8.1094  0.71932
+STATS LOCAL VITERBI   -7.7031  0.71932
+STATS LOCAL FORWARD   -4.2976  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47474  1.39097  1.25491  1.43874
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  0.00000        *
+      1   3.39050  0.13541  3.44174  2.79787      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      2   3.05148  2.57149  3.10104  0.18478      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      3   0.14687  3.34333  2.77786  3.24152      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      4   3.05148  2.57149  3.10104  0.18478      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      5   3.39050  0.13541  3.44174  2.79787      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      6   3.39050  0.13541  3.44174  2.79787      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      7   3.05148  2.57149  3.10104  0.18478      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      8   0.14687  3.34333  2.77786  3.24152      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+      9   3.05148  2.57149  3.10104  0.18478      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     10   2.92158  3.55014  0.12136  3.45094     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     11   3.39050  0.13541  3.44174  2.79787     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     12   2.92158  3.55014  0.12136  3.45094     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     13   2.92158  3.55014  0.12136  3.45094     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     14   3.05148  2.57149  3.10104  0.18478     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     15   2.92158  3.55014  0.12136  3.45094     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     16   2.92158  3.55014  0.12136  3.45094     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     17   0.14687  3.34333  2.77786  3.24152     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     18   3.05148  2.57149  3.10104  0.18478     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     19   3.39050  0.13541  3.44174  2.79787     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     20   0.14687  3.34333  2.77786  3.24152     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     21   3.39050  0.13541  3.44174  2.79787     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     22   3.05148  2.57149  3.10104  0.18478     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     23   3.39050  0.13541  3.44174  2.79787     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     24   2.92158  3.55014  0.12136  3.45094     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     25   2.92158  3.55014  0.12136  3.45094     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     26   3.39050  0.13541  3.44174  2.79787     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     27   3.05148  2.57149  3.10104  0.18478     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     28   3.39050  0.13541  3.44174  2.79787     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     29   2.92158  3.55014  0.12136  3.45094     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     30   3.05148  2.57149  3.10104  0.18478     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     31   2.92158  3.55014  0.12136  3.45094     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     32   2.92158  3.55014  0.12136  3.45094     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     33   0.14687  3.34333  2.77786  3.24152     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     34   3.05148  2.57149  3.10104  0.18478     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     35   3.39050  0.13541  3.44174  2.79787     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     36   2.92158  3.55014  0.12136  3.45094     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     37   0.14687  3.34333  2.77786  3.24152     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     38   3.05148  2.57149  3.10104  0.18478     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     39   2.92158  3.55014  0.12136  3.45094     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     40   0.14687  3.34333  2.77786  3.24152     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     41   0.14687  3.34333  2.77786  3.24152     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     42   2.92158  3.55014  0.12136  3.45094     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     43   0.14687  3.34333  2.77786  3.24152     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     44   0.14687  3.34333  2.77786  3.24152     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
+     45   3.39050  0.13541  3.44174  2.79787     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01901  3.97208        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_thirteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:22:45 2012
+NSEQ  4
+EFFN  3.152344
+CKSUM 810384303
+STATS LOCAL MSV       -8.0298  0.71932
+STATS LOCAL VITERBI   -7.7615  0.71932
+STATS LOCAL FORWARD   -4.0731  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47142  1.39865  1.14135  1.58922
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  0.00000        *
+      1   3.36834  0.13821  3.42049  2.78160      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      2   0.14954  3.32415  2.76532  3.22056      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      3   0.14954  3.32415  2.76532  3.22056      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      4   3.36834  0.13821  3.42049  2.78160      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      5   3.36834  0.13821  3.42049  2.78160      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      6   3.03232  2.55926  3.08260  0.18802      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      7   3.36834  0.13821  3.42049  2.78160      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      8   2.90797  3.53050  0.12362  3.42932      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      9   0.14954  3.32415  2.76532  3.22056      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     10   2.90797  3.53050  0.12362  3.42932     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     11   3.03232  2.55926  3.08260  0.18802     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     12   2.90797  3.53050  0.12362  3.42932     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     13   2.90797  3.53050  0.12362  3.42932     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     14   3.03232  2.55926  3.08260  0.18802     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     15   2.90797  3.53050  0.12362  3.42932     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     16   2.90797  3.53050  0.12362  3.42932     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     17   0.14954  3.32415  2.76532  3.22056     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     18   3.03232  2.55926  3.08260  0.18802     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     19   3.36834  0.13821  3.42049  2.78160     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     20   0.14954  3.32415  2.76532  3.22056     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     21   3.36834  0.13821  3.42049  2.78160     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     22   3.03232  2.55926  3.08260  0.18802     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     23   3.36834  0.13821  3.42049  2.78160     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     24   2.90797  3.53050  0.12362  3.42932     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     25   2.90797  3.53050  0.12362  3.42932     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     26   3.36834  0.13821  3.42049  2.78160     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     27   3.03232  2.55926  3.08260  0.18802     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     28   3.36834  0.13821  3.42049  2.78160     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     29   2.90797  3.53050  0.12362  3.42932     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     30   3.03232  2.55926  3.08260  0.18802     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     31   2.90797  3.53050  0.12362  3.42932     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     32   2.90797  3.53050  0.12362  3.42932     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     33   2.90797  3.53050  0.12362  3.42932     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     34   3.03232  2.55926  3.08260  0.18802     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     35   3.36834  0.13821  3.42049  2.78160     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     36   2.90797  3.53050  0.12362  3.42932     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     37   0.14954  3.32415  2.76532  3.22056     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     38   3.03232  2.55926  3.08260  0.18802     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     39   2.90797  3.53050  0.12362  3.42932     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     40   0.14954  3.32415  2.76532  3.22056     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     41   0.14954  3.32415  2.76532  3.22056     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     42   2.90797  3.53050  0.12362  3.42932     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     43   0.14954  3.32415  2.76532  3.22056     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     44   0.14954  3.32415  2.76532  3.22056     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     45   3.36834  0.13821  3.42049  2.78160     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01922  3.96126        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_thirty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:28:30 2012
+NSEQ  7
+EFFN  3.264160
+CKSUM 812206563
+STATS LOCAL MSV       -8.0813  0.71932
+STATS LOCAL VITERBI   -7.6510  0.71932
+STATS LOCAL FORWARD   -3.9317  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.46033  1.26627  1.27290  1.58016
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  0.00000        *
+      1   0.14442  3.36134  2.78962  3.26122      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      2   2.93428  3.56852  0.11929  3.47120      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      3   0.14442  3.36134  2.78962  3.26122      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      4   3.41129  0.13284  3.46167  2.81309      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      5   3.06955  2.58301  3.11843  0.18178      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      6   3.41129  0.13284  3.46167  2.81309      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      7   3.06955  2.58301  3.11843  0.18178      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      8   2.93428  3.56852  0.11929  3.47120      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      9   3.41129  0.13284  3.46167  2.81309      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     10   0.14442  3.36134  2.78962  3.26122     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     11   3.41129  0.13284  3.46167  2.81309     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     12   2.93428  3.56852  0.11929  3.47120     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     13   2.93428  3.56852  0.11929  3.47120     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     14   3.06955  2.58301  3.11843  0.18178     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     15   2.93428  3.56852  0.11929  3.47120     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     16   1.52120  2.73041  0.44409  2.59090     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     17   0.14442  3.36134  2.78962  3.26122     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     18   3.06955  2.58301  3.11843  0.18178     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     19   3.41129  0.13284  3.46167  2.81309     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     20   3.06955  2.58301  3.11843  0.18178     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     21   3.41129  0.13284  3.46167  2.81309     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     22   3.06955  2.58301  3.11843  0.18178     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     23   3.41129  0.13284  3.46167  2.81309     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     24   2.93428  3.56852  0.11929  3.47120     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     25   2.93428  3.56852  0.11929  3.47120     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     26   3.41129  0.13284  3.46167  2.81309     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     27   3.06955  2.58301  3.11843  0.18178     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     28   3.41129  0.13284  3.46167  2.81309     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     29   2.93428  3.56852  0.11929  3.47120     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     30   3.41129  0.13284  3.46167  2.81309     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     31   2.93428  3.56852  0.11929  3.47120     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     32   3.41129  0.13284  3.46167  2.81309     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     33   0.14442  3.36134  2.78962  3.26122     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     34   3.06955  2.58301  3.11843  0.18178     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     35   3.41129  0.13284  3.46167  2.81309     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     36   2.93428  3.56852  0.11929  3.47120     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     37   0.14442  3.36134  2.78962  3.26122     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     38   3.06955  2.58301  3.11843  0.18178     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     39   2.93428  3.56852  0.11929  3.47120     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     40   0.14442  3.36134  2.78962  3.26122     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     41   0.14442  3.36134  2.78962  3.26122     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     42   2.93428  3.56852  0.11929  3.47120     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     43   0.14442  3.36134  2.78962  3.26122     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     44   0.14442  3.36134  2.78962  3.26122     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     45   3.41129  0.13284  3.46167  2.81309     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01882  3.98232        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_thirtyonea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:28:37 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1046995822
+STATS LOCAL MSV       -7.5868  0.72754
+STATS LOCAL VITERBI   -8.1846  0.72754
+STATS LOCAL FORWARD   -3.1677  0.72754
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.59609  1.19386  1.27094  1.54321
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_thirtyoneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:28:43 2012
+NSEQ  5
+EFFN  3.129883
+CKSUM 4096650600
+STATS LOCAL MSV       -8.1750  0.71933
+STATS LOCAL VITERBI   -7.7706  0.71933
+STATS LOCAL FORWARD   -3.7607  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63938  1.10429  1.26146  1.65438
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  0.00000        *
+      1   3.02470  2.55440  3.07528  0.18933      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      2   3.35951  0.13934  3.41202  2.77509      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      3   2.90252  3.52266  0.12454  3.42069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      4   3.35951  0.13934  3.41202  2.77509      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      5   3.02470  2.55440  3.07528  0.18933      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      6   3.35951  0.13934  3.41202  2.77509      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      7   3.35951  0.13934  3.41202  2.77509      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      8   2.90252  3.52266  0.12454  3.42069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+      9   3.35951  0.13934  3.41202  2.77509      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     10   0.15061  3.31651  2.76031  3.21221     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     11   3.35951  0.13934  3.41202  2.77509     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     12   2.90252  3.52266  0.12454  3.42069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     13   2.90252  3.52266  0.12454  3.42069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     14   3.02470  2.55440  3.07528  0.18933     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     15   2.90252  3.52266  0.12454  3.42069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     16   2.90252  3.52266  0.12454  3.42069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     17   0.15061  3.31651  2.76031  3.21221     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     18   3.02470  2.55440  3.07528  0.18933     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     19   3.35951  0.13934  3.41202  2.77509     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     20   3.02470  2.55440  3.07528  0.18933     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     21   3.35951  0.13934  3.41202  2.77509     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     22   3.02470  2.55440  3.07528  0.18933     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     23   3.35951  0.13934  3.41202  2.77509     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     24   2.90252  3.52266  0.12454  3.42069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     25   2.90252  3.52266  0.12454  3.42069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     26   3.35951  0.13934  3.41202  2.77509     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     27   3.02470  2.55440  3.07528  0.18933     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     28   3.35951  0.13934  3.41202  2.77509     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     29   2.90252  3.52266  0.12454  3.42069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     30   3.35951  0.13934  3.41202  2.77509     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     31   2.90252  3.52266  0.12454  3.42069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     32   3.35951  0.13934  3.41202  2.77509     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     33   0.15061  3.31651  2.76031  3.21221     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     34   3.02470  2.55440  3.07528  0.18933     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     35   3.35951  0.13934  3.41202  2.77509     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     36   2.90252  3.52266  0.12454  3.42069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     37   0.15061  3.31651  2.76031  3.21221     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     38   3.35951  0.13934  3.41202  2.77509     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     39   2.90252  3.52266  0.12454  3.42069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     40   0.15061  3.31651  2.76031  3.21221     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     41   0.15061  3.31651  2.76031  3.21221     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     42   2.90252  3.52266  0.12454  3.42069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     43   0.15061  3.31651  2.76031  3.21221     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     44   0.15061  3.31651  2.76031  3.21221     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
+     45   3.35951  0.13934  3.41202  2.77509     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01931  3.95697        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_thirtythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:29:03 2012
+NSEQ  48
+EFFN  3.647461
+CKSUM 4032312740
+STATS LOCAL MSV       -7.4786  0.71932
+STATS LOCAL VITERBI   -7.7717  0.71932
+STATS LOCAL FORWARD   -3.9630  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.04914  1.61632  1.50702  1.47158
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  0.00000        *
+      1   0.12954  3.47883  2.86559  3.38999      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      2   2.41031  3.38048  0.17632  3.27461      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      3   0.12954  3.47883  2.86559  3.38999      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      4   3.54628  0.11749  3.59080  2.91069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      5   3.18923  2.65900  3.23350  0.16327      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      6   3.54628  0.11749  3.59080  2.91069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      7   0.12954  3.47883  2.86559  3.38999      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      8   0.12954  3.47883  2.86559  3.38999      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+      9   3.18923  2.65900  3.23350  0.16327      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     10   0.16654  3.33925  2.54021  3.24169     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     11   3.18923  2.65900  3.23350  0.16327     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     12   3.01510  3.68679  0.10688  3.60196     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     13   3.01510  3.68679  0.10688  3.60196     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     14   2.02112  3.12880  0.25580  3.00727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     15   3.01510  3.68679  0.10688  3.60196     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     16   3.01510  3.68679  0.10688  3.60196     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     17   0.12954  3.47883  2.86559  3.38999     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     18   3.18923  2.65900  3.23350  0.16327     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     19   3.54628  0.11749  3.59080  2.91069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     20   0.12954  3.47883  2.86559  3.38999     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     21   3.54628  0.11749  3.59080  2.91069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     22   3.18923  2.65900  3.23350  0.16327     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     23   3.18923  2.65900  3.23350  0.16327     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     24   0.12954  3.47883  2.86559  3.38999     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     25   3.01510  3.68679  0.10688  3.60196     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     26   3.18923  2.65900  3.23350  0.16327     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     27   3.54628  0.11749  3.59080  2.91069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     28   3.54628  0.11749  3.59080  2.91069     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     29   3.05688  2.33574  3.10645  0.20891     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     30   3.18923  2.65900  3.23350  0.16327     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     31   0.23754  3.03409  2.32699  2.72222     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     32   0.21364  3.18940  2.25141  3.08099     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     33   0.12954  3.47883  2.86559  3.38999     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     34   2.02083  2.14463  1.31013  0.73281     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     35   3.54628  0.11749  3.59080  2.91069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     36   3.01510  3.68679  0.10688  3.60196     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     37   0.12954  3.47883  2.86559  3.38999     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     38   3.18923  2.65900  3.23350  0.16327     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     39   3.01510  3.68679  0.10688  3.60196     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     40   0.12954  3.47883  2.86559  3.38999     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     41   0.12954  3.47883  2.86559  3.38999     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     42   0.12954  3.47883  2.86559  3.38999     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     43   0.12954  3.47883  2.86559  3.38999     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     44   0.12954  3.47883  2.86559  3.38999     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
+     45   3.54628  0.11749  3.59080  2.91069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01755  4.05134        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_thirtytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:28:55 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 879315818
+STATS LOCAL MSV       -8.1527  0.71989
+STATS LOCAL VITERBI   -7.7905  0.71989
+STATS LOCAL FORWARD   -3.8287  0.71989
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63033  1.27343  1.14436  1.58067
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.86982  3.47591  0.13017  3.36931     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_threea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:14:04 2012
+NSEQ  9
+EFFN  3.440918
+CKSUM 1294574687
+STATS LOCAL MSV       -7.3109  0.71933
+STATS LOCAL VITERBI   -7.6663  0.71933
+STATS LOCAL FORWARD   -4.3716  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.46775  1.47309  1.24708  1.37438
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  0.00000        *
+      1   3.47583  0.12523  3.52346  2.85999      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+      2   3.12623  2.61905  3.17294  0.17273      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+      3   0.13709  3.41738  2.82598  3.32258      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+      4   2.97325  3.62528  0.11314  3.53388      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+      5   2.52215  1.34100  2.59044  0.53933      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+      6   2.51499  0.60153  2.58667  1.21776      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+      7   3.12623  2.61905  3.17294  0.17273      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+      8   3.12623  2.61905  3.17294  0.17273      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+      9   0.13709  3.41738  2.82598  3.32258      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     10   3.12623  2.61905  3.17294  0.17273     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     11   3.47583  0.12523  3.52346  2.85999     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     12   2.97325  3.62528  0.11314  3.53388     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     13   2.97325  3.62528  0.11314  3.53388     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     14   3.12623  2.61905  3.17294  0.17273     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     15   2.97325  3.62528  0.11314  3.53388     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     16   2.97325  3.62528  0.11314  3.53388     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     17   0.13709  3.41738  2.82598  3.32258     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     18   3.12623  2.61905  3.17294  0.17273     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     19   3.47583  0.12523  3.52346  2.85999     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     20   0.13709  3.41738  2.82598  3.32258     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     21   3.47583  0.12523  3.52346  2.85999     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     22   3.12623  2.61905  3.17294  0.17273     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     23   3.47583  0.12523  3.52346  2.85999     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     24   2.97325  3.62528  0.11314  3.53388     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     25   2.97325  3.62528  0.11314  3.53388     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     26   3.47583  0.12523  3.52346  2.85999     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     27   3.12623  2.61905  3.17294  0.17273     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     28   3.47583  0.12523  3.52346  2.85999     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     29   2.97325  3.62528  0.11314  3.53388     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     30   3.12623  2.61905  3.17294  0.17273     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     31   0.13709  3.41738  2.82598  3.32258     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     32   2.97325  3.62528  0.11314  3.53388     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     33   2.97325  3.62528  0.11314  3.53388     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     34   3.12623  2.61905  3.17294  0.17273     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     35   3.47583  0.12523  3.52346  2.85999     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     36   2.97325  3.62528  0.11314  3.53388     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     37   0.13709  3.41738  2.82598  3.32258     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     38   3.12623  2.61905  3.17294  0.17273     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     39   2.97325  3.62528  0.11314  3.53388     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     40   0.13709  3.41738  2.82598  3.32258     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     41   0.13709  3.41738  2.82598  3.32258     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     42   2.97325  3.62528  0.11314  3.53388     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     43   0.13709  3.41738  2.82598  3.32258     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     44   0.13709  3.41738  2.82598  3.32258     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     45   3.47583  0.12523  3.52346  2.85999     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01821  4.01475        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_threeb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:14:09 2012
+NSEQ  11
+EFFN  3.305908
+CKSUM 1468312356
+STATS LOCAL MSV       -8.0909  0.71933
+STATS LOCAL VITERBI   -7.7497  0.71933
+STATS LOCAL FORWARD   -4.1867  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47160  1.44665  1.25108  1.39075
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  0.00000        *
+      1   3.42690  0.13095  3.47662  2.82448      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+      2   3.08318  2.59169  3.13154  0.17955      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+      3   0.14261  3.37488  2.79843  3.27603      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+      4   2.94377  3.58229  0.11776  3.48639      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+      5   2.56468  1.50508  2.63123  0.46352      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+      6   3.42690  0.13095  3.47662  2.82448      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+      7   3.08318  2.59169  3.13154  0.17955      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+      8   3.08318  2.59169  3.13154  0.17955      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+      9   0.14261  3.37488  2.79843  3.27603      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     10   3.08318  2.59169  3.13154  0.17955     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     11   3.42690  0.13095  3.47662  2.82448     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     12   2.94377  3.58229  0.11776  3.48639     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     13   2.94377  3.58229  0.11776  3.48639     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     14   3.08318  2.59169  3.13154  0.17955     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     15   2.94377  3.58229  0.11776  3.48639     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     16   2.94377  3.58229  0.11776  3.48639     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     17   0.14261  3.37488  2.79843  3.27603     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     18   3.08318  2.59169  3.13154  0.17955     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     19   3.42690  0.13095  3.47662  2.82448     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     20   0.14261  3.37488  2.79843  3.27603     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     21   3.42690  0.13095  3.47662  2.82448     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     22   3.08318  2.59169  3.13154  0.17955     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     23   3.42690  0.13095  3.47662  2.82448     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     24   2.94377  3.58229  0.11776  3.48639     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     25   2.94377  3.58229  0.11776  3.48639     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     26   3.42690  0.13095  3.47662  2.82448     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     27   3.08318  2.59169  3.13154  0.17955     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     28   3.42690  0.13095  3.47662  2.82448     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     29   2.94377  3.58229  0.11776  3.48639     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     30   3.08318  2.59169  3.13154  0.17955     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     31   2.94377  3.58229  0.11776  3.48639     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     32   2.94377  3.58229  0.11776  3.48639     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     33   0.14261  3.37488  2.79843  3.27603     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     34   3.08318  2.59169  3.13154  0.17955     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     35   3.42690  0.13095  3.47662  2.82448     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     36   2.94377  3.58229  0.11776  3.48639     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     37   0.14261  3.37488  2.79843  3.27603     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     38   3.08318  2.59169  3.13154  0.17955     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     39   2.94377  3.58229  0.11776  3.48639     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     40   0.14261  3.37488  2.79843  3.27603     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     41   0.14261  3.37488  2.79843  3.27603     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     42   2.94377  3.58229  0.11776  3.48639     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     43   0.14261  3.37488  2.79843  3.27603     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     44   0.14261  3.37488  2.79843  3.27603     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     45   3.42690  0.13095  3.47662  2.82448     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01867  3.99008        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_threec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:14:16 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2545387361
+STATS LOCAL MSV       -7.5549  0.72799
+STATS LOCAL VITERBI   -8.0703  0.72799
+STATS LOCAL FORWARD   -3.5515  0.72799
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45791  1.39682  1.31896  1.37642
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.57915  2.25909  2.64442  0.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_threed_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:14:21 2012
+NSEQ  45
+EFFN  3.683167
+CKSUM 4010874590
+STATS LOCAL MSV       -7.4061  0.71931
+STATS LOCAL VITERBI   -7.6816  0.71931
+STATS LOCAL FORWARD   -4.2977  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.49218  1.44109  1.26114  1.36603
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  0.00000        *
+      1   3.55794  0.11626  3.60194  2.91903      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+      2   2.07066  2.41571  2.68444  0.33361      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+      3   0.12833  3.48903  2.87216  3.40119      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+      4   2.91264  3.46927  0.13977  3.10184      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+      5   2.97042  2.13237  3.02366  0.24649      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+      6   3.55794  0.11626  3.60194  2.91903      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+      7   3.19979  2.66569  3.24363  0.16175      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+      8   3.19979  2.66569  3.24363  0.16175      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+      9   0.12833  3.48903  2.87216  3.40119      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     10   3.19979  2.66569  3.24363  0.16175     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     11   3.55794  0.11626  3.60194  2.91903     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     12   3.02197  3.69692  0.10588  3.61320     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     13   3.02197  3.69692  0.10588  3.61320     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     14   3.19979  2.66569  3.24363  0.16175     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     15   3.02197  3.69692  0.10588  3.61320     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     16   3.02197  3.69692  0.10588  3.61320     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     17   0.12833  3.48903  2.87216  3.40119     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     18   3.19979  2.66569  3.24363  0.16175     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     19   3.55794  0.11626  3.60194  2.91903     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     20   0.12833  3.48903  2.87216  3.40119     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     21   3.55794  0.11626  3.60194  2.91903     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     22   3.19979  2.66569  3.24363  0.16175     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     23   3.55794  0.11626  3.60194  2.91903     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     24   3.02197  3.69692  0.10588  3.61320     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     25   3.02197  3.69692  0.10588  3.61320     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     26   3.55794  0.11626  3.60194  2.91903     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     27   3.19979  2.66569  3.24363  0.16175     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     28   3.55794  0.11626  3.60194  2.91903     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     29   3.02197  3.69692  0.10588  3.61320     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     30   3.11654  2.45448  3.16369  0.18933     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     31   0.75718  2.58056  0.99991  2.43760     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     32   3.02197  3.69692  0.10588  3.61320     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     33   1.66714  2.17550  0.79154  1.40848     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     34   3.19979  2.66569  3.24363  0.16175     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     35   3.55794  0.11626  3.60194  2.91903     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     36   3.02197  3.69692  0.10588  3.61320     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     37   0.12833  3.48903  2.87216  3.40119     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     38   3.19979  2.66569  3.24363  0.16175     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     39   3.02197  3.69692  0.10588  3.61320     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     40   0.12833  3.48903  2.87216  3.40119     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     41   0.12833  3.48903  2.87216  3.40119     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     42   3.02197  3.69692  0.10588  3.61320     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     43   0.12833  3.48903  2.87216  3.40119     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     44   0.12833  3.48903  2.87216  3.40119     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
+     45   3.55794  0.11626  3.60194  2.91903     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01744  4.05754        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_threee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:14:26 2012
+NSEQ  11
+EFFN  3.246826
+CKSUM 1748157936
+STATS LOCAL MSV       -7.9085  0.71932
+STATS LOCAL VITERBI   -7.7074  0.71932
+STATS LOCAL FORWARD   -4.1988  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40311  1.45887  1.31500  1.37360
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  0.00000        *
+      1   3.40474  0.13364  3.45540  2.80830      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+      2   3.06385  2.57938  3.11295  0.18272      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+      3   0.14519  3.35567  2.78592  3.25501      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+      4   0.14519  3.35567  2.78592  3.25501      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+      5   3.06385  2.57938  3.11295  0.18272      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+      6   3.40474  0.13364  3.45540  2.80830      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+      7   3.06385  2.57938  3.11295  0.18272      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+      8   3.06385  2.57938  3.11295  0.18272      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+      9   0.14519  3.35567  2.78592  3.25501      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     10   3.06385  2.57938  3.11295  0.18272     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     11   3.40474  0.13364  3.45540  2.80830     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     12   2.93029  3.56274  0.11993  3.46483     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     13   2.93029  3.56274  0.11993  3.46483     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     14   3.06385  2.57938  3.11295  0.18272     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     15   2.93029  3.56274  0.11993  3.46483     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     16   2.93029  3.56274  0.11993  3.46483     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     17   0.14519  3.35567  2.78592  3.25501     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
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+     19   3.40474  0.13364  3.45540  2.80830     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     20   0.14519  3.35567  2.78592  3.25501     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     21   3.40474  0.13364  3.45540  2.80830     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     22   3.06385  2.57938  3.11295  0.18272     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     23   3.40474  0.13364  3.45540  2.80830     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     24   2.93029  3.56274  0.11993  3.46483     24 - -
+          1.38629  1.38629  1.38629  1.38629
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+     25   2.93029  3.56274  0.11993  3.46483     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     26   3.40474  0.13364  3.45540  2.80830     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     27   3.06385  2.57938  3.11295  0.18272     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     28   3.40474  0.13364  3.45540  2.80830     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     29   2.93029  3.56274  0.11993  3.46483     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     30   3.06385  2.57938  3.11295  0.18272     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     31   2.93029  3.56274  0.11993  3.46483     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     32   2.93029  3.56274  0.11993  3.46483     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     33   2.93029  3.56274  0.11993  3.46483     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     34   3.06385  2.57938  3.11295  0.18272     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     35   3.40474  0.13364  3.45540  2.80830     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     36   2.93029  3.56274  0.11993  3.46483     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     37   0.14519  3.35567  2.78592  3.25501     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     38   3.06385  2.57938  3.11295  0.18272     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     39   0.14519  3.35567  2.78592  3.25501     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     40   0.14519  3.35567  2.78592  3.25501     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     41   0.14519  3.35567  2.78592  3.25501     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     42   2.93029  3.56274  0.11993  3.46483     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     43   0.14519  3.35567  2.78592  3.25501     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     44   0.14519  3.35567  2.78592  3.25501     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     45   3.40474  0.13364  3.45540  2.80830     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97909        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_threef_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:14:31 2012
+NSEQ  6
+EFFN  3.260742
+CKSUM 2895050922
+STATS LOCAL MSV       -8.0239  0.71933
+STATS LOCAL VITERBI   -7.6662  0.71933
+STATS LOCAL FORWARD   -4.3060  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47461  1.45532  1.31571  1.31109
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  0.00000        *
+      1   3.41001  0.13300  3.46044  2.81215      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+      2   3.06843  2.58230  3.11735  0.18196      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+      3   0.14457  3.36023  2.78889  3.26000      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+      4   2.93350  3.56738  0.11941  3.46995      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+      5   3.06843  2.58230  3.11735  0.18196      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+      6   3.41001  0.13300  3.46044  2.81215      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+      7   3.06843  2.58230  3.11735  0.18196      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+      8   3.06843  2.58230  3.11735  0.18196      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+      9   0.14457  3.36023  2.78889  3.26000      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     10   3.06843  2.58230  3.11735  0.18196     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     11   3.41001  0.13300  3.46044  2.81215     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     12   2.93350  3.56738  0.11941  3.46995     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     13   2.93350  3.56738  0.11941  3.46995     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     14   3.06843  2.58230  3.11735  0.18196     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     15   2.93350  3.56738  0.11941  3.46995     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     16   2.93350  3.56738  0.11941  3.46995     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     17   0.14457  3.36023  2.78889  3.26000     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     18   3.06843  2.58230  3.11735  0.18196     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     19   3.41001  0.13300  3.46044  2.81215     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     20   0.14457  3.36023  2.78889  3.26000     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     21   3.41001  0.13300  3.46044  2.81215     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     22   3.06843  2.58230  3.11735  0.18196     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     23   3.41001  0.13300  3.46044  2.81215     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     24   2.93350  3.56738  0.11941  3.46995     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     25   2.93350  3.56738  0.11941  3.46995     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     26   3.41001  0.13300  3.46044  2.81215     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     27   3.06843  2.58230  3.11735  0.18196     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     28   3.41001  0.13300  3.46044  2.81215     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     29   2.93350  3.56738  0.11941  3.46995     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     30   3.06843  2.58230  3.11735  0.18196     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     31   0.14457  3.36023  2.78889  3.26000     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     32   2.93350  3.56738  0.11941  3.46995     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     33   3.06843  2.58230  3.11735  0.18196     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     34   3.06843  2.58230  3.11735  0.18196     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     35   3.41001  0.13300  3.46044  2.81215     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     36   2.93350  3.56738  0.11941  3.46995     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     37   0.14457  3.36023  2.78889  3.26000     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     38   3.06843  2.58230  3.11735  0.18196     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     39   2.93350  3.56738  0.11941  3.46995     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     40   0.14457  3.36023  2.78889  3.26000     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     41   0.14457  3.36023  2.78889  3.26000     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     42   2.93350  3.56738  0.11941  3.46995     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     43   0.14457  3.36023  2.78889  3.26000     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     44   0.14457  3.36023  2.78889  3.26000     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
+     45   3.41001  0.13300  3.46044  2.81215     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01883  3.98169        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_threeg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:14:36 2012
+NSEQ  4
+EFFN  3.246094
+CKSUM 3441283875
+STATS LOCAL MSV       -7.9932  0.71931
+STATS LOCAL VITERBI   -7.7567  0.71931
+STATS LOCAL FORWARD   -4.3175  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54718  1.53589  1.19538  1.31193
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  0.00000        *
+      1   3.06361  2.57923  3.11272  0.18276      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      2   3.06361  2.57923  3.11272  0.18276      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      3   0.14522  3.35543  2.78576  3.25475      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      4   0.14522  3.35543  2.78576  3.25475      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      5   3.06361  2.57923  3.11272  0.18276      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      6   3.40447  0.13368  3.45513  2.80810      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      7   3.06361  2.57923  3.11272  0.18276      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      8   3.06361  2.57923  3.11272  0.18276      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      9   0.14522  3.35543  2.78576  3.25475      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     10   3.06361  2.57923  3.11272  0.18276     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     11   3.40447  0.13368  3.45513  2.80810     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     12   2.93012  3.56249  0.11996  3.46456     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     13   2.93012  3.56249  0.11996  3.46456     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     14   3.06361  2.57923  3.11272  0.18276     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     15   2.93012  3.56249  0.11996  3.46456     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     16   2.93012  3.56249  0.11996  3.46456     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     17   0.14522  3.35543  2.78576  3.25475     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     18   3.06361  2.57923  3.11272  0.18276     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     19   3.40447  0.13368  3.45513  2.80810     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     20   0.14522  3.35543  2.78576  3.25475     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     21   3.40447  0.13368  3.45513  2.80810     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     22   3.06361  2.57923  3.11272  0.18276     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     23   3.40447  0.13368  3.45513  2.80810     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     24   2.93012  3.56249  0.11996  3.46456     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     25   2.93012  3.56249  0.11996  3.46456     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     26   3.40447  0.13368  3.45513  2.80810     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     27   3.06361  2.57923  3.11272  0.18276     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     28   3.40447  0.13368  3.45513  2.80810     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     29   2.93012  3.56249  0.11996  3.46456     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     30   3.06361  2.57923  3.11272  0.18276     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     31   2.93012  3.56249  0.11996  3.46456     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     32   2.93012  3.56249  0.11996  3.46456     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     33   2.93012  3.56249  0.11996  3.46456     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     34   3.06361  2.57923  3.11272  0.18276     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     35   3.40447  0.13368  3.45513  2.80810     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     36   2.93012  3.56249  0.11996  3.46456     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     37   0.14522  3.35543  2.78576  3.25475     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     38   3.06361  2.57923  3.11272  0.18276     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     39   2.93012  3.56249  0.11996  3.46456     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     40   0.14522  3.35543  2.78576  3.25475     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     41   0.14522  3.35543  2.78576  3.25475     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     42   2.93012  3.56249  0.11996  3.46456     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     43   0.14522  3.35543  2.78576  3.25475     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     44   2.93012  3.56249  0.11996  3.46456     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     45   3.40447  0.13368  3.45513  2.80810     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97895        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_threeh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:14:40 2012
+NSEQ  4
+EFFN  3.269531
+CKSUM 1714705976
+STATS LOCAL MSV       -7.9738  0.71932
+STATS LOCAL VITERBI   -7.6259  0.71932
+STATS LOCAL FORWARD   -4.2493  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40268  1.53488  1.31339  1.31054
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  0.00000        *
+      1   3.07131  2.58413  3.12013  0.18149      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      2   3.07131  2.58413  3.12013  0.18149      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      3   0.14418  3.36310  2.79076  3.26314      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      4   2.93551  3.57031  0.11909  3.47317      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      5   3.07131  2.58413  3.12013  0.18149      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      6   3.41331  0.13259  3.46361  2.81457      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      7   3.07131  2.58413  3.12013  0.18149      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      8   3.07131  2.58413  3.12013  0.18149      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      9   0.14418  3.36310  2.79076  3.26314      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     10   3.07131  2.58413  3.12013  0.18149     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     11   3.41331  0.13259  3.46361  2.81457     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     12   2.93551  3.57031  0.11909  3.47317     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     13   2.93551  3.57031  0.11909  3.47317     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     14   3.07131  2.58413  3.12013  0.18149     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     15   2.93551  3.57031  0.11909  3.47317     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     16   2.93551  3.57031  0.11909  3.47317     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     17   0.14418  3.36310  2.79076  3.26314     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     18   3.07131  2.58413  3.12013  0.18149     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     19   3.41331  0.13259  3.46361  2.81457     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     20   0.14418  3.36310  2.79076  3.26314     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     21   3.41331  0.13259  3.46361  2.81457     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     22   3.07131  2.58413  3.12013  0.18149     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     23   3.41331  0.13259  3.46361  2.81457     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     24   2.93551  3.57031  0.11909  3.47317     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     25   2.93551  3.57031  0.11909  3.47317     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     26   3.41331  0.13259  3.46361  2.81457     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     27   3.07131  2.58413  3.12013  0.18149     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     28   3.41331  0.13259  3.46361  2.81457     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     29   2.93551  3.57031  0.11909  3.47317     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     30   3.07131  2.58413  3.12013  0.18149     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     31   0.14418  3.36310  2.79076  3.26314     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     32   2.93551  3.57031  0.11909  3.47317     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     33   0.14418  3.36310  2.79076  3.26314     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     34   3.07131  2.58413  3.12013  0.18149     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     35   3.41331  0.13259  3.46361  2.81457     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     36   2.93551  3.57031  0.11909  3.47317     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     37   0.14418  3.36310  2.79076  3.26314     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     38   3.07131  2.58413  3.12013  0.18149     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     39   2.93551  3.57031  0.11909  3.47317     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     40   0.14418  3.36310  2.79076  3.26314     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     41   0.14418  3.36310  2.79076  3.26314     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     42   2.93551  3.57031  0.11909  3.47317     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     43   0.14418  3.36310  2.79076  3.26314     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     44   0.14418  3.36310  2.79076  3.26314     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     45   3.41331  0.13259  3.46361  2.81457     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01880  3.98333        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_threei_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:14:45 2012
+NSEQ  4
+EFFN  3.285156
+CKSUM 3641792887
+STATS LOCAL MSV       -7.9429  0.71931
+STATS LOCAL VITERBI   -7.7130  0.71931
+STATS LOCAL FORWARD   -4.1718  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33712  1.53172  1.37863  1.31189
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  0.00000        *
+      1   3.41917  0.13188  3.46922  2.81884      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      2   3.07642  2.58739  3.12504  0.18065      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      3   0.14350  3.36817  2.79406  3.26870      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      4   2.93908  3.57547  0.11851  3.47887      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      5   3.07642  2.58739  3.12504  0.18065      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      6   3.41917  0.13188  3.46922  2.81884      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      7   3.07642  2.58739  3.12504  0.18065      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      8   3.07642  2.58739  3.12504  0.18065      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      9   0.14350  3.36817  2.79406  3.26870      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     10   3.07642  2.58739  3.12504  0.18065     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     11   3.41917  0.13188  3.46922  2.81884     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     12   2.93908  3.57547  0.11851  3.47887     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     13   2.93908  3.57547  0.11851  3.47887     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     14   3.07642  2.58739  3.12504  0.18065     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     15   2.93908  3.57547  0.11851  3.47887     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     16   2.93908  3.57547  0.11851  3.47887     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     17   0.14350  3.36817  2.79406  3.26870     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     18   3.07642  2.58739  3.12504  0.18065     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     19   3.41917  0.13188  3.46922  2.81884     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     20   0.14350  3.36817  2.79406  3.26870     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     21   3.41917  0.13188  3.46922  2.81884     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     22   3.07642  2.58739  3.12504  0.18065     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     23   3.41917  0.13188  3.46922  2.81884     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     24   2.93908  3.57547  0.11851  3.47887     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     25   2.93908  3.57547  0.11851  3.47887     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     26   3.07642  2.58739  3.12504  0.18065     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     27   3.07642  2.58739  3.12504  0.18065     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     28   3.41917  0.13188  3.46922  2.81884     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     29   0.14350  3.36817  2.79406  3.26870     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     30   3.07642  2.58739  3.12504  0.18065     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     31   0.14350  3.36817  2.79406  3.26870     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     32   2.93908  3.57547  0.11851  3.47887     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     33   0.14350  3.36817  2.79406  3.26870     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     34   3.07642  2.58739  3.12504  0.18065     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     35   3.41917  0.13188  3.46922  2.81884     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     36   2.93908  3.57547  0.11851  3.47887     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     37   0.14350  3.36817  2.79406  3.26870     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     38   3.07642  2.58739  3.12504  0.18065     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     39   2.93908  3.57547  0.11851  3.47887     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     40   0.14350  3.36817  2.79406  3.26870     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     41   0.14350  3.36817  2.79406  3.26870     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     42   2.93908  3.57547  0.11851  3.47887     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     43   0.14350  3.36817  2.79406  3.26870     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     44   0.14350  3.36817  2.79406  3.26870     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     45   3.41917  0.13188  3.46922  2.81884     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01874  3.98623        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_threej_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:14:51 2012
+NSEQ  13
+EFFN  3.526123
+CKSUM 1276633975
+STATS LOCAL MSV       -7.3728  0.71932
+STATS LOCAL VITERBI   -7.7120  0.71932
+STATS LOCAL FORWARD   -4.2838  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.65970  1.42943  1.18428  1.33031
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  0.00000        *
+      1   2.45176  1.04716  2.52278  0.72838      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+      2   3.15264  2.63580  3.19832  0.16869      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+      3   0.13385  3.44324  2.84268  3.35093      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+      4   2.99096  3.65126  0.11044  3.56262      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+      5   3.15264  2.63580  3.19832  0.16869      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+      6   3.50552  0.12189  3.55185  2.88142      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+      7   3.15264  2.63580  3.19832  0.16869      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+      8   3.15264  2.63580  3.19832  0.16869      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+      9   2.06638  3.13182  0.24789  3.01044      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     10   3.50552  0.12189  3.55185  2.88142     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     11   3.50552  0.12189  3.55185  2.88142     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     12   2.99096  3.65126  0.11044  3.56262     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     13   2.99096  3.65126  0.11044  3.56262     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     14   3.15264  2.63580  3.19832  0.16869     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     15   2.99096  3.65126  0.11044  3.56262     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     16   2.99096  3.65126  0.11044  3.56262     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     17   0.13385  3.44324  2.84268  3.35093     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     18   3.15264  2.63580  3.19832  0.16869     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     19   3.50552  0.12189  3.55185  2.88142     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     20   0.13385  3.44324  2.84268  3.35093     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     21   3.50552  0.12189  3.55185  2.88142     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     22   3.15264  2.63580  3.19832  0.16869     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     23   3.50552  0.12189  3.55185  2.88142     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     24   2.99096  3.65126  0.11044  3.56262     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     25   2.99096  3.65126  0.11044  3.56262     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     26   3.50552  0.12189  3.55185  2.88142     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     27   3.15264  2.63580  3.19832  0.16869     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     28   3.50552  0.12189  3.55185  2.88142     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     29   2.99096  3.65126  0.11044  3.56262     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     30   3.15264  2.63580  3.19832  0.16869     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     31   0.60052  2.60773  1.22791  2.46665     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     32   2.99096  3.65126  0.11044  3.56262     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     33   2.99096  3.65126  0.11044  3.56262     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     34   3.15264  2.63580  3.19832  0.16869     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     35   3.50552  0.12189  3.55185  2.88142     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     36   2.99096  3.65126  0.11044  3.56262     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     37   0.13385  3.44324  2.84268  3.35093     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     38   3.15264  2.63580  3.19832  0.16869     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     39   2.99096  3.65126  0.11044  3.56262     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     40   0.13385  3.44324  2.84268  3.35093     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     41   0.13385  3.44324  2.84268  3.35093     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     42   2.99096  3.65126  0.11044  3.56262     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     43   0.13385  3.44324  2.84268  3.35093     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     44   3.15264  2.63580  3.19832  0.16869     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
+     45   3.50552  0.12189  3.55185  2.88142     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01793  4.03001        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_threek_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:15:00 2012
+NSEQ  7
+EFFN  3.236816
+CKSUM 408270587
+STATS LOCAL MSV       -8.0805  0.71933
+STATS LOCAL VITERBI   -7.6899  0.71933
+STATS LOCAL FORWARD   -4.3059  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47561  1.38702  1.31668  1.37231
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  0.00000        *
+      1   3.40094  0.13411  3.45175  2.80552      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+      2   3.06055  2.57727  3.10977  0.18327      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+      3   0.14563  3.35238  2.78377  3.25141      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+      4   2.92797  3.55938  0.12031  3.46113      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+      5   3.40094  0.13411  3.45175  2.80552      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+      6   3.40094  0.13411  3.45175  2.80552      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+      7   3.06055  2.57727  3.10977  0.18327      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+      8   3.06055  2.57727  3.10977  0.18327      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+      9   0.14563  3.35238  2.78377  3.25141      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     10   3.06055  2.57727  3.10977  0.18327     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     11   3.40094  0.13411  3.45175  2.80552     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     12   2.92797  3.55938  0.12031  3.46113     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     13   2.92797  3.55938  0.12031  3.46113     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     14   3.06055  2.57727  3.10977  0.18327     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     15   2.92797  3.55938  0.12031  3.46113     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     16   2.92797  3.55938  0.12031  3.46113     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     17   0.14563  3.35238  2.78377  3.25141     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     18   3.06055  2.57727  3.10977  0.18327     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     19   3.40094  0.13411  3.45175  2.80552     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     20   0.14563  3.35238  2.78377  3.25141     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     21   3.40094  0.13411  3.45175  2.80552     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     22   3.06055  2.57727  3.10977  0.18327     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     23   3.40094  0.13411  3.45175  2.80552     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     24   2.92797  3.55938  0.12031  3.46113     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     25   2.92797  3.55938  0.12031  3.46113     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     26   3.40094  0.13411  3.45175  2.80552     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     27   3.06055  2.57727  3.10977  0.18327     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     28   3.40094  0.13411  3.45175  2.80552     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     29   2.92797  3.55938  0.12031  3.46113     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     30   3.06055  2.57727  3.10977  0.18327     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     31   0.14563  3.35238  2.78377  3.25141     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     32   2.92797  3.55938  0.12031  3.46113     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     33   3.06055  2.57727  3.10977  0.18327     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     34   3.06055  2.57727  3.10977  0.18327     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     35   3.40094  0.13411  3.45175  2.80552     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     36   2.92797  3.55938  0.12031  3.46113     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     37   0.14563  3.35238  2.78377  3.25141     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     38   3.06055  2.57727  3.10977  0.18327     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     39   2.92797  3.55938  0.12031  3.46113     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     40   0.14563  3.35238  2.78377  3.25141     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     41   0.14563  3.35238  2.78377  3.25141     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     42   2.92797  3.55938  0.12031  3.46113     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     43   0.14563  3.35238  2.78377  3.25141     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     44   0.14563  3.35238  2.78377  3.25141     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
+     45   3.40094  0.13411  3.45175  2.80552     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01892  3.97721        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_threel_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:15:05 2012
+NSEQ  25
+EFFN  4.135132
+CKSUM 2110423648
+STATS LOCAL MSV       -6.6693  0.71932
+STATS LOCAL VITERBI   -7.6515  0.71932
+STATS LOCAL FORWARD   -4.2746  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45592  1.47226  1.24572  1.38760
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  0.00000        *
+      1   2.75651  1.52436  2.81926  0.41691      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+      2   2.63176  0.58501  2.70182  1.19117      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+      3   0.11510  3.60848  2.94886  3.53248      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+      4   2.65467  2.97644  0.26677  2.18167      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+      5   2.58086  1.11840  2.64957  0.64092      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+      6   3.69346  0.10301  3.73121  3.01519      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+      7   3.10767  2.20433  3.15658  0.22015      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+      8   3.32527  2.74533  3.36417  0.14477      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+      9   0.17998  3.25332  2.79731  2.73200      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     10   2.70488  0.49385  2.77382  1.34543     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     11   3.69346  0.10301  3.73121  3.01519     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     12   3.10093  3.81394  0.09513  3.74311     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     13   3.10093  3.81394  0.09513  3.74311     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     14   3.32527  2.74533  3.36417  0.14477     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     15   3.10093  3.81394  0.09513  3.74311     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     16   3.10093  3.81394  0.09513  3.74311     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     17   0.11510  3.60848  2.94886  3.53248     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     18   3.32527  2.74533  3.36417  0.14477     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     19   3.69346  0.10301  3.73121  3.01519     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     20   0.11510  3.60848  2.94886  3.53248     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     21   3.69346  0.10301  3.73121  3.01519     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     22   3.32527  2.74533  3.36417  0.14477     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     23   2.10833  0.30601  2.83467  2.48356     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     24   3.10093  3.81394  0.09513  3.74311     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     25   3.10093  3.81394  0.09513  3.74311     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     26   2.65455  1.31607  2.72074  0.51809     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     27   3.32527  2.74533  3.36417  0.14477     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     28   3.69346  0.10301  3.73121  3.01519     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     29   3.10093  3.81394  0.09513  3.74311     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     30   3.32527  2.74533  3.36417  0.14477     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     31   3.10093  3.81394  0.09513  3.74311     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     32   3.10093  3.81394  0.09513  3.74311     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     33   0.11510  3.60848  2.94886  3.53248     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     34   3.32527  2.74533  3.36417  0.14477     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     35   3.69346  0.10301  3.73121  3.01519     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     36   3.10093  3.81394  0.09513  3.74311     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     37   0.11510  3.60848  2.94886  3.53248     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     38   3.32527  2.74533  3.36417  0.14477     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     39   3.10093  3.81394  0.09513  3.74311     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     40   0.11510  3.60848  2.94886  3.53248     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     41   0.11510  3.60848  2.94886  3.53248     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     42   3.10093  3.81394  0.09513  3.74311     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     43   0.11510  3.60848  2.94886  3.53248     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     44   0.11510  3.60848  2.94886  3.53248     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
+     45   3.69346  0.10301  3.73121  3.01519     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01617  4.13278        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twelve_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:22:32 2012
+NSEQ  7
+EFFN  3.168457
+CKSUM 1185329725
+STATS LOCAL MSV       -8.1739  0.71932
+STATS LOCAL VITERBI   -7.6654  0.71932
+STATS LOCAL FORWARD   -4.0933  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54876  1.39734  1.14224  1.50899
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  0.00000        *
+      1   3.03775  2.56273  3.08783  0.18710      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      2   3.03775  2.56273  3.08783  0.18710      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      3   0.14877  3.32959  2.76888  3.22651      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      4   3.37463  0.13741  3.42653  2.78623      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      5   3.37463  0.13741  3.42653  2.78623      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      6   3.37463  0.13741  3.42653  2.78623      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      7   3.03775  2.56273  3.08783  0.18710      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      8   2.91185  3.53609  0.12297  3.43546      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+      9   2.91185  3.53609  0.12297  3.43546      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     10   0.14877  3.32959  2.76888  3.22651     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     11   3.37463  0.13741  3.42653  2.78623     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     12   2.91185  3.53609  0.12297  3.43546     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     13   2.91185  3.53609  0.12297  3.43546     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     14   3.03775  2.56273  3.08783  0.18710     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     15   2.91185  3.53609  0.12297  3.43546     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     16   2.91185  3.53609  0.12297  3.43546     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     17   0.14877  3.32959  2.76888  3.22651     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     18   3.03775  2.56273  3.08783  0.18710     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     19   3.37463  0.13741  3.42653  2.78623     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     20   0.14877  3.32959  2.76888  3.22651     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     21   3.37463  0.13741  3.42653  2.78623     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     22   3.03775  2.56273  3.08783  0.18710     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     23   3.03775  2.56273  3.08783  0.18710     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     24   2.91185  3.53609  0.12297  3.43546     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     25   2.91185  3.53609  0.12297  3.43546     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     26   3.37463  0.13741  3.42653  2.78623     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     27   3.03775  2.56273  3.08783  0.18710     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     28   3.37463  0.13741  3.42653  2.78623     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     29   2.91185  3.53609  0.12297  3.43546     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     30   3.37463  0.13741  3.42653  2.78623     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     31   2.91185  3.53609  0.12297  3.43546     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     32   2.91185  3.53609  0.12297  3.43546     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     33   2.91185  3.53609  0.12297  3.43546     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     34   3.03775  2.56273  3.08783  0.18710     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     35   3.37463  0.13741  3.42653  2.78623     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     36   2.91185  3.53609  0.12297  3.43546     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     37   0.14877  3.32959  2.76888  3.22651     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     38   3.03775  2.56273  3.08783  0.18710     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     39   2.91185  3.53609  0.12297  3.43546     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     40   0.14877  3.32959  2.76888  3.22651     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     41   0.14877  3.32959  2.76888  3.22651     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     42   2.91185  3.53609  0.12297  3.43546     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     43   0.14877  3.32959  2.76888  3.22651     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     44   0.14877  3.32959  2.76888  3.22651     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
+     45   3.37463  0.13741  3.42653  2.78623     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01916  3.96432        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twenty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:26:13 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 718889203
+STATS LOCAL MSV       -7.4369  0.72883
+STATS LOCAL VITERBI   -8.3333  0.72883
+STATS LOCAL FORWARD   -3.3820  0.72883
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.43056  1.37707  1.25719  1.49587
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.15554  1.00938  2.23102  0.88601     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   1.03732  1.95876  1.96551  1.00928     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twentyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:28:10 2012
+NSEQ  4
+EFFN  3.199219
+CKSUM 997121201
+STATS LOCAL MSV       -8.1142  0.71933
+STATS LOCAL VITERBI   -7.6231  0.71933
+STATS LOCAL FORWARD   -4.2369  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21776  1.39643  1.37797  1.58700
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  0.00000        *
+      1   3.38655  0.13590  3.43796  2.79498      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      2   0.14734  3.33991  2.77563  3.23778      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      3   0.14734  3.33991  2.77563  3.23778      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      4   3.38655  0.13590  3.43796  2.79498      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      5   3.38655  0.13590  3.43796  2.79498      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      6   0.14734  3.33991  2.77563  3.23778      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      7   3.04806  2.56931  3.09775  0.18535      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      8   2.91917  3.54665  0.12176  3.44709      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+      9   0.14734  3.33991  2.77563  3.23778      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     10   0.14734  3.33991  2.77563  3.23778     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     11   3.38655  0.13590  3.43796  2.79498     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     12   0.14734  3.33991  2.77563  3.23778     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     13   2.91917  3.54665  0.12176  3.44709     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     14   3.04806  2.56931  3.09775  0.18535     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     15   2.91917  3.54665  0.12176  3.44709     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     16   2.91917  3.54665  0.12176  3.44709     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     17   0.14734  3.33991  2.77563  3.23778     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     18   3.04806  2.56931  3.09775  0.18535     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     19   3.38655  0.13590  3.43796  2.79498     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     20   0.14734  3.33991  2.77563  3.23778     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     21   3.38655  0.13590  3.43796  2.79498     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     22   3.04806  2.56931  3.09775  0.18535     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     23   3.38655  0.13590  3.43796  2.79498     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     24   2.91917  3.54665  0.12176  3.44709     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     25   2.91917  3.54665  0.12176  3.44709     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     26   3.38655  0.13590  3.43796  2.79498     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     27   3.04806  2.56931  3.09775  0.18535     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     28   3.38655  0.13590  3.43796  2.79498     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     29   2.91917  3.54665  0.12176  3.44709     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     30   3.04806  2.56931  3.09775  0.18535     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     31   2.91917  3.54665  0.12176  3.44709     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     32   3.04806  2.56931  3.09775  0.18535     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     33   0.14734  3.33991  2.77563  3.23778     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     34   3.04806  2.56931  3.09775  0.18535     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     35   3.38655  0.13590  3.43796  2.79498     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     36   2.91917  3.54665  0.12176  3.44709     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     37   0.14734  3.33991  2.77563  3.23778     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     38   3.04806  2.56931  3.09775  0.18535     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     39   2.91917  3.54665  0.12176  3.44709     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     40   0.14734  3.33991  2.77563  3.23778     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     41   0.14734  3.33991  2.77563  3.23778     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     42   2.91917  3.54665  0.12176  3.44709     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     43   0.14734  3.33991  2.77563  3.23778     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     44   0.14734  3.33991  2.77563  3.23778     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
+     45   3.38655  0.13590  3.43796  2.79498     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01905  3.97014        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twentyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:26:58 2012
+NSEQ  7
+EFFN  3.257324
+CKSUM 2784065201
+STATS LOCAL MSV       -8.1117  0.71933
+STATS LOCAL VITERBI   -7.4429  0.71933
+STATS LOCAL FORWARD   -4.2246  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33671  1.45799  1.38014  1.37419
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  0.00000        *
+      1   3.40872  0.13316  3.45920  2.81121      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+      2   0.14472  3.35911  2.78816  3.25878      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+      3   0.14472  3.35911  2.78816  3.25878      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+      4   3.40872  0.13316  3.45920  2.81121      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+      5   3.06731  2.58158  3.11627  0.18215      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+      6   3.06731  2.58158  3.11627  0.18215      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+      7   3.06731  2.58158  3.11627  0.18215      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+      8   3.06731  2.58158  3.11627  0.18215      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+      9   0.14472  3.35911  2.78816  3.25878      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     10   0.14472  3.35911  2.78816  3.25878     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     11   3.40872  0.13316  3.45920  2.81121     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     12   2.93271  3.56625  0.11954  3.46869     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     13   2.93271  3.56625  0.11954  3.46869     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     14   3.06731  2.58158  3.11627  0.18215     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     15   2.93271  3.56625  0.11954  3.46869     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     16   2.93271  3.56625  0.11954  3.46869     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     17   0.14472  3.35911  2.78816  3.25878     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     18   3.06731  2.58158  3.11627  0.18215     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     19   3.40872  0.13316  3.45920  2.81121     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     20   3.06731  2.58158  3.11627  0.18215     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     21   3.40872  0.13316  3.45920  2.81121     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     22   3.06731  2.58158  3.11627  0.18215     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     23   0.14472  3.35911  2.78816  3.25878     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     24   2.93271  3.56625  0.11954  3.46869     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     25   2.93271  3.56625  0.11954  3.46869     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     26   3.40872  0.13316  3.45920  2.81121     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     27   3.06731  2.58158  3.11627  0.18215     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     28   3.40872  0.13316  3.45920  2.81121     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     29   2.93271  3.56625  0.11954  3.46869     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     30   3.40872  0.13316  3.45920  2.81121     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     31   2.93271  3.56625  0.11954  3.46869     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     32   3.06731  2.58158  3.11627  0.18215     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     33   0.14472  3.35911  2.78816  3.25878     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     34   3.06731  2.58158  3.11627  0.18215     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     35   3.40872  0.13316  3.45920  2.81121     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     36   2.93271  3.56625  0.11954  3.46869     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     37   0.14472  3.35911  2.78816  3.25878     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     38   3.06731  2.58158  3.11627  0.18215     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     39   2.93271  3.56625  0.11954  3.46869     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     40   0.14472  3.35911  2.78816  3.25878     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     41   0.14472  3.35911  2.78816  3.25878     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     42   2.93271  3.56625  0.11954  3.46869     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     43   0.14472  3.35911  2.78816  3.25878     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     44   0.14472  3.35911  2.78816  3.25878     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     45   3.40872  0.13316  3.45920  2.81121     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01884  3.98105        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twentyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:26:51 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4071785967
+STATS LOCAL MSV       -7.3852  0.72798
+STATS LOCAL VITERBI   -8.0260  0.72798
+STATS LOCAL FORWARD   -3.6008  0.72798
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.52069  1.33872  1.32202  1.37570
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twentynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:28:20 2012
+NSEQ  4
+EFFN  3.238281
+CKSUM 1537853273
+STATS LOCAL MSV       -8.1019  0.71933
+STATS LOCAL VITERBI   -7.6129  0.71933
+STATS LOCAL FORWARD   -4.0493  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21502  1.62390  1.30909  1.44351
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  0.00000        *
+      1   3.06103  2.57758  3.11024  0.18319      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      2   3.40150  0.13404  3.45229  2.80593      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      3   0.14557  3.35286  2.78409  3.25194      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      4   3.40150  0.13404  3.45229  2.80593      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      5   0.14557  3.35286  2.78409  3.25194      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      6   0.14557  3.35286  2.78409  3.25194      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      7   3.06103  2.57758  3.11024  0.18319      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      8   3.06103  2.57758  3.11024  0.18319      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      9   0.14557  3.35286  2.78409  3.25194      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     10   0.14557  3.35286  2.78409  3.25194     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     11   3.40150  0.13404  3.45229  2.80593     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     12   2.92831  3.55987  0.12026  3.46167     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     13   2.92831  3.55987  0.12026  3.46167     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     14   3.06103  2.57758  3.11024  0.18319     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     15   2.92831  3.55987  0.12026  3.46167     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     16   2.92831  3.55987  0.12026  3.46167     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     17   0.14557  3.35286  2.78409  3.25194     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     18   3.06103  2.57758  3.11024  0.18319     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     19   3.40150  0.13404  3.45229  2.80593     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     20   0.14557  3.35286  2.78409  3.25194     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     21   3.40150  0.13404  3.45229  2.80593     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     22   3.06103  2.57758  3.11024  0.18319     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     23   3.06103  2.57758  3.11024  0.18319     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     24   2.92831  3.55987  0.12026  3.46167     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     25   2.92831  3.55987  0.12026  3.46167     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     26   2.92831  3.55987  0.12026  3.46167     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     27   3.06103  2.57758  3.11024  0.18319     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     28   3.40150  0.13404  3.45229  2.80593     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     29   2.92831  3.55987  0.12026  3.46167     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     30   3.06103  2.57758  3.11024  0.18319     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     31   0.14557  3.35286  2.78409  3.25194     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     32   2.92831  3.55987  0.12026  3.46167     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     33   0.14557  3.35286  2.78409  3.25194     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     34   3.06103  2.57758  3.11024  0.18319     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     35   3.40150  0.13404  3.45229  2.80593     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     36   2.92831  3.55987  0.12026  3.46167     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     37   0.14557  3.35286  2.78409  3.25194     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     38   3.06103  2.57758  3.11024  0.18319     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     39   2.92831  3.55987  0.12026  3.46167     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     40   0.14557  3.35286  2.78409  3.25194     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     41   0.14557  3.35286  2.78409  3.25194     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     42   2.92831  3.55987  0.12026  3.46167     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     43   0.14557  3.35286  2.78409  3.25194     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     44   0.14557  3.35286  2.78409  3.25194     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     45   3.40150  0.13404  3.45229  2.80593     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01891  3.97749        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twentyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:26:19 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2207381587
+STATS LOCAL MSV       -7.9442  0.71991
+STATS LOCAL VITERBI   -7.7532  0.71991
+STATS LOCAL FORWARD   -3.8730  0.71991
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54730  1.33345  1.14506  1.58275
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.86982  3.47591  0.13017  3.36931      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   3.30705  0.14631  3.36166  2.73626     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.86982  3.47591  0.13017  3.36931     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.97980  2.52563  3.03204  0.19727     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.86982  3.47591  0.13017  3.36931     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twentysevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:27:19 2012
+NSEQ  44
+EFFN  3.316650
+CKSUM 3195064440
+STATS LOCAL MSV       -8.1963  0.71932
+STATS LOCAL VITERBI   -7.7078  0.71932
+STATS LOCAL FORWARD   -4.2345  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.42255  1.20259  1.37985  1.57568
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  0.00000        *
+      1   3.43088  0.13047  3.48043  2.82738      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      2   0.14215  3.37833  2.80067  3.27981      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      3   0.14215  3.37833  2.80067  3.27981      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      4   3.43088  0.13047  3.48043  2.82738      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      5   3.08666  2.59390  3.13489  0.17899      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      6   3.08666  2.59390  3.13489  0.17899      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      7   3.43088  0.13047  3.48043  2.82738      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      8   3.08666  2.59390  3.13489  0.17899      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+      9   0.14215  3.37833  2.80067  3.27981      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     10   0.14215  3.37833  2.80067  3.27981     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     11   3.43088  0.13047  3.48043  2.82738     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     12   2.94618  3.58579  0.11737  3.49026     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     13   2.94618  3.58579  0.11737  3.49026     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     14   3.08666  2.59390  3.13489  0.17899     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     15   2.94618  3.58579  0.11737  3.49026     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     16   2.94618  3.58579  0.11737  3.49026     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     17   0.14215  3.37833  2.80067  3.27981     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     18   3.43088  0.13047  3.48043  2.82738     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     19   3.43088  0.13047  3.48043  2.82738     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     20   3.43088  0.13047  3.48043  2.82738     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     21   3.43088  0.13047  3.48043  2.82738     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     22   3.08666  2.59390  3.13489  0.17899     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     23   3.43088  0.13047  3.48043  2.82738     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     24   2.94618  3.58579  0.11737  3.49026     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     25   2.94618  3.58579  0.11737  3.49026     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     26   3.43088  0.13047  3.48043  2.82738     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     27   3.08666  2.59390  3.13489  0.17899     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     28   3.43088  0.13047  3.48043  2.82738     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     29   2.23374  3.19285  0.21615  3.07464     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     30   3.08666  2.59390  3.13489  0.17899     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     31   2.94618  3.58579  0.11737  3.49026     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     32   3.43088  0.13047  3.48043  2.82738     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     33   0.45634  2.68837  1.51211  2.55144     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     34   3.08666  2.59390  3.13489  0.17899     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     35   3.43088  0.13047  3.48043  2.82738     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     36   2.94618  3.58579  0.11737  3.49026     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     37   0.14215  3.37833  2.80067  3.27981     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     38   3.08666  2.59390  3.13489  0.17899     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     39   2.94618  3.58579  0.11737  3.49026     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     40   0.14215  3.37833  2.80067  3.27981     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     41   0.14215  3.37833  2.80067  3.27981     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     42   2.94618  3.58579  0.11737  3.49026     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     43   0.14215  3.37833  2.80067  3.27981     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     44   0.14215  3.37833  2.80067  3.27981     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
+     45   3.43088  0.13047  3.48043  2.82738     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01863  3.99206        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twentysevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:27:24 2012
+NSEQ  5
+EFFN  3.178711
+CKSUM 557866279
+STATS LOCAL MSV       -8.2628  0.71932
+STATS LOCAL VITERBI   -7.7354  0.71932
+STATS LOCAL FORWARD   -4.3627  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40535  1.26751  1.31792  1.58234
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  0.00000        *
+      1   3.37862  0.13690  3.43035  2.78916      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      2   0.14829  3.33304  2.77114  3.23028      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      3   0.14829  3.33304  2.77114  3.23028      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      4   3.37862  0.13690  3.43035  2.78916      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      5   3.04119  2.56493  3.09115  0.18651      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      6   3.04119  2.56493  3.09115  0.18651      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      7   3.37862  0.13690  3.43035  2.78916      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      8   3.04119  2.56493  3.09115  0.18651      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      9   0.14829  3.33304  2.77114  3.23028      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     10   0.14829  3.33304  2.77114  3.23028     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     11   3.37862  0.13690  3.43035  2.78916     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     12   2.91430  3.53962  0.12257  3.43936     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     13   2.91430  3.53962  0.12257  3.43936     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     14   3.04119  2.56493  3.09115  0.18651     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     15   2.91430  3.53962  0.12257  3.43936     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     16   2.91430  3.53962  0.12257  3.43936     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     17   0.14829  3.33304  2.77114  3.23028     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     18   3.37862  0.13690  3.43035  2.78916     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     19   0.14829  3.33304  2.77114  3.23028     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     20   3.37862  0.13690  3.43035  2.78916     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     21   3.37862  0.13690  3.43035  2.78916     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     22   3.04119  2.56493  3.09115  0.18651     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     23   3.37862  0.13690  3.43035  2.78916     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     24   2.91430  3.53962  0.12257  3.43936     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     25   2.91430  3.53962  0.12257  3.43936     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     26   3.37862  0.13690  3.43035  2.78916     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     27   3.04119  2.56493  3.09115  0.18651     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     28   3.37862  0.13690  3.43035  2.78916     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     29   2.91430  3.53962  0.12257  3.43936     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     30   3.04119  2.56493  3.09115  0.18651     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     31   2.91430  3.53962  0.12257  3.43936     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     32   3.04119  2.56493  3.09115  0.18651     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     33   0.14829  3.33304  2.77114  3.23028     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     34   3.37862  0.13690  3.43035  2.78916     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     35   3.37862  0.13690  3.43035  2.78916     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     36   2.91430  3.53962  0.12257  3.43936     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     37   0.14829  3.33304  2.77114  3.23028     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     38   3.04119  2.56493  3.09115  0.18651     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     39   2.91430  3.53962  0.12257  3.43936     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     40   0.14829  3.33304  2.77114  3.23028     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     41   0.14829  3.33304  2.77114  3.23028     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     42   2.91430  3.53962  0.12257  3.43936     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     43   0.14829  3.33304  2.77114  3.23028     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     44   2.91430  3.53962  0.12257  3.43936     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     45   3.37862  0.13690  3.43035  2.78916     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01913  3.96627        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twentysevenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:27:29 2012
+NSEQ  4
+EFFN  3.363281
+CKSUM 862441232
+STATS LOCAL MSV       -8.0904  0.71931
+STATS LOCAL VITERBI   -7.5210  0.71931
+STATS LOCAL FORWARD   -4.2499  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.44563  1.38319  1.31183  1.40936
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  0.00000        *
+      1   3.44798  0.12845  3.49681  2.83981      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      2   0.14020  3.39317  2.81030  3.29606      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      3   0.14020  3.39317  2.81030  3.29606      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      4   3.44798  0.12845  3.49681  2.83981      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      5   3.10166  2.60344  3.14932  0.17659      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      6   3.10166  2.60344  3.14932  0.17659      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      7   3.44798  0.12845  3.49681  2.83981      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      8   3.10166  2.60344  3.14932  0.17659      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      9   2.95651  3.60084  0.11574  3.50687      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     10   0.14020  3.39317  2.81030  3.29606     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     11   3.44798  0.12845  3.49681  2.83981     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     12   2.95651  3.60084  0.11574  3.50687     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     13   2.95651  3.60084  0.11574  3.50687     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     14   3.10166  2.60344  3.14932  0.17659     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     15   2.95651  3.60084  0.11574  3.50687     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     16   2.95651  3.60084  0.11574  3.50687     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     17   0.14020  3.39317  2.81030  3.29606     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     18   3.10166  2.60344  3.14932  0.17659     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     19   3.44798  0.12845  3.49681  2.83981     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     20   3.10166  2.60344  3.14932  0.17659     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     21   3.44798  0.12845  3.49681  2.83981     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     22   3.10166  2.60344  3.14932  0.17659     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     23   0.97344  2.14787  2.16342  0.94018     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     24   2.95651  3.60084  0.11574  3.50687     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     25   2.95651  3.60084  0.11574  3.50687     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     26   3.44798  0.12845  3.49681  2.83981     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     27   3.10166  2.60344  3.14932  0.17659     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     28   3.44798  0.12845  3.49681  2.83981     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     29   2.95651  3.60084  0.11574  3.50687     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     30   3.10166  2.60344  3.14932  0.17659     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     31   2.95651  3.60084  0.11574  3.50687     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     32   3.44798  0.12845  3.49681  2.83981     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     33   0.14020  3.39317  2.81030  3.29606     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     34   3.10166  2.60344  3.14932  0.17659     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     35   3.44798  0.12845  3.49681  2.83981     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     36   2.95651  3.60084  0.11574  3.50687     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     37   0.14020  3.39317  2.81030  3.29606     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     38   3.10166  2.60344  3.14932  0.17659     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     39   2.95651  3.60084  0.11574  3.50687     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     40   0.14020  3.39317  2.81030  3.29606     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     41   0.14020  3.39317  2.81030  3.29606     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     42   2.95651  3.60084  0.11574  3.50687     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     43   0.14020  3.39317  2.81030  3.29606     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     44   0.14020  3.39317  2.81030  3.29606     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     45   3.44798  0.12845  3.49681  2.83981     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01847  4.00063        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twentysevend_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:27:33 2012
+NSEQ  4
+EFFN  3.355469
+CKSUM 3256074058
+STATS LOCAL MSV       -7.9928  0.71933
+STATS LOCAL VITERBI   -7.4659  0.71933
+STATS LOCAL FORWARD   -4.2898  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40045  1.36100  1.37985  1.40449
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  0.00000        *
+      1   3.44514  0.12878  3.49408  2.83774      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+      2   0.14052  3.39070  2.80870  3.29336      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+      3   0.14052  3.39070  2.80870  3.29336      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+      4   3.44514  0.12878  3.49408  2.83774      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+      5   3.09916  2.60185  3.14691  0.17699      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+      6   3.09916  2.60185  3.14691  0.17699      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+      7   3.44514  0.12878  3.49408  2.83774      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+      8   2.41122  0.95644  2.48325  0.81517      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+      9   0.14052  3.39070  2.80870  3.29336      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     10   0.14052  3.39070  2.80870  3.29336     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     11   3.44514  0.12878  3.49408  2.83774     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     12   2.95480  3.59834  0.11601  3.50411     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     13   2.95480  3.59834  0.11601  3.50411     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     14   3.09916  2.60185  3.14691  0.17699     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     15   2.95480  3.59834  0.11601  3.50411     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     16   2.95480  3.59834  0.11601  3.50411     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     17   0.14052  3.39070  2.80870  3.29336     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     18   3.09916  2.60185  3.14691  0.17699     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     19   3.44514  0.12878  3.49408  2.83774     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     20   3.09916  2.60185  3.14691  0.17699     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     21   3.44514  0.12878  3.49408  2.83774     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     22   3.09916  2.60185  3.14691  0.17699     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     23   3.44514  0.12878  3.49408  2.83774     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     24   2.95480  3.59834  0.11601  3.50411     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     25   2.95480  3.59834  0.11601  3.50411     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     26   3.44514  0.12878  3.49408  2.83774     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     27   3.09916  2.60185  3.14691  0.17699     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     28   3.09916  2.60185  3.14691  0.17699     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     29   2.95480  3.59834  0.11601  3.50411     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     30   3.09916  2.60185  3.14691  0.17699     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     31   2.95480  3.59834  0.11601  3.50411     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     32   3.44514  0.12878  3.49408  2.83774     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     33   0.14052  3.39070  2.80870  3.29336     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     34   3.09916  2.60185  3.14691  0.17699     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     35   3.44514  0.12878  3.49408  2.83774     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     36   2.95480  3.59834  0.11601  3.50411     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     37   0.14052  3.39070  2.80870  3.29336     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     38   3.09916  2.60185  3.14691  0.17699     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     39   2.95480  3.59834  0.11601  3.50411     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     40   0.14052  3.39070  2.80870  3.29336     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     41   0.14052  3.39070  2.80870  3.29336     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     42   2.95480  3.59834  0.11601  3.50411     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     43   0.14052  3.39070  2.80870  3.29336     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     44   0.14052  3.39070  2.80870  3.29336     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
+     45   3.44514  0.12878  3.49408  2.83774     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01850  3.99920        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twentysevene_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:27:39 2012
+NSEQ  7
+EFFN  3.195801
+CKSUM 3140450226
+STATS LOCAL MSV       -8.0348  0.71932
+STATS LOCAL VITERBI   -7.6161  0.71932
+STATS LOCAL FORWARD   -4.0740  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27701  1.32955  1.38039  1.58448
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  0.00000        *
+      1   3.38523  0.13607  3.43670  2.79401      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+      2   0.14750  3.33877  2.77489  3.23653      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+      3   0.14750  3.33877  2.77489  3.23653      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+      4   3.38523  0.13607  3.43670  2.79401      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+      5   3.04692  2.56858  3.09666  0.18555      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+      6   3.38523  0.13607  3.43670  2.79401      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+      7   0.14750  3.33877  2.77489  3.23653      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+      8   2.91836  3.54548  0.12189  3.44581      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+      9   0.14750  3.33877  2.77489  3.23653      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     10   0.14750  3.33877  2.77489  3.23653     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     11   3.38523  0.13607  3.43670  2.79401     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     12   2.91836  3.54548  0.12189  3.44581     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     13   2.91836  3.54548  0.12189  3.44581     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     14   3.04692  2.56858  3.09666  0.18555     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     15   2.91836  3.54548  0.12189  3.44581     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     16   2.91836  3.54548  0.12189  3.44581     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     17   0.14750  3.33877  2.77489  3.23653     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     18   3.04692  2.56858  3.09666  0.18555     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     19   3.38523  0.13607  3.43670  2.79401     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     20   3.04692  2.56858  3.09666  0.18555     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     21   3.38523  0.13607  3.43670  2.79401     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     22   3.04692  2.56858  3.09666  0.18555     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     23   3.04692  2.56858  3.09666  0.18555     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     24   2.91836  3.54548  0.12189  3.44581     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     25   2.91836  3.54548  0.12189  3.44581     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     26   3.38523  0.13607  3.43670  2.79401     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     27   3.04692  2.56858  3.09666  0.18555     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     28   3.38523  0.13607  3.43670  2.79401     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     29   0.14750  3.33877  2.77489  3.23653     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     30   3.38523  0.13607  3.43670  2.79401     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     31   2.91836  3.54548  0.12189  3.44581     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     32   3.38523  0.13607  3.43670  2.79401     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     33   0.14750  3.33877  2.77489  3.23653     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     34   3.04692  2.56858  3.09666  0.18555     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     35   3.38523  0.13607  3.43670  2.79401     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     36   2.91836  3.54548  0.12189  3.44581     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     37   0.14750  3.33877  2.77489  3.23653     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     38   3.04692  2.56858  3.09666  0.18555     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     39   2.91836  3.54548  0.12189  3.44581     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     40   0.14750  3.33877  2.77489  3.23653     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     41   0.14750  3.33877  2.77489  3.23653     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     42   2.91836  3.54548  0.12189  3.44581     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     43   0.14750  3.33877  2.77489  3.23653     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     44   0.14750  3.33877  2.77489  3.23653     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     45   3.38523  0.13607  3.43670  2.79401     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01906  3.96950        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twentysevenf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:27:48 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2853933875
+STATS LOCAL MSV       -7.5713  0.72765
+STATS LOCAL VITERBI   -8.1497  0.72765
+STATS LOCAL FORWARD   -3.4317  0.72765
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39938  1.29426  1.32042  1.55057
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   0.23862  2.84929  2.43386  2.70756     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twentyseveng_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:27:53 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2803901569
+STATS LOCAL MSV       -7.6218  0.72807
+STATS LOCAL VITERBI   -8.1462  0.72807
+STATS LOCAL FORWARD   -3.4806  0.72807
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39704  1.39574  1.37569  1.37692
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   0.23862  2.84929  2.43386  2.70756     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twentysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:27:08 2012
+NSEQ  253
+EFFN  4.026474
+CKSUM 1317147062
+STATS LOCAL MSV       -7.2295  0.71931
+STATS LOCAL VITERBI   -7.5384  0.71931
+STATS LOCAL FORWARD   -4.2378  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39703  1.43388  1.38321  1.33365
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  0.00000        *
+      1   3.40850  0.15906  3.45793  2.49536      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+      2   0.11797  3.58132  2.93141  3.50261      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+      3   0.11797  3.58132  2.93141  3.50261      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+      4   3.59353  0.11910  3.63549  2.84027      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+      5   3.29641  2.72699  3.33646  0.14849      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+      6   3.22497  2.53341  3.26815  0.17105      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+      7   3.10291  2.24632  3.15164  0.21504      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+      8   2.85111  2.18143  3.02339  0.24756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+      9   0.56245  2.70702  1.24874  2.56935      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     10   0.12854  3.53848  2.81268  3.45705     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     11   3.66283  0.10585  3.70202  2.99357     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     12   3.08319  3.78761  0.09744  3.71385     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     13   3.08319  3.78761  0.09744  3.71385     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     14   3.25561  2.61343  3.29740  0.16113     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     15   3.08319  3.78761  0.09744  3.71385     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     16   3.08319  3.78761  0.09744  3.71385     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     17   0.11797  3.58132  2.93141  3.50261     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     18   3.29641  2.72699  3.33646  0.14849     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     19   3.66283  0.10585  3.70202  2.99357     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     20   3.29641  2.72699  3.33646  0.14849     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     21   3.66283  0.10585  3.70202  2.99357     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     22   3.29641  2.72699  3.33646  0.14849     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     23   2.09673  2.47384  2.75948  0.31532     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     24   3.08319  3.78761  0.09744  3.71385     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     25   3.08319  3.78761  0.09744  3.71385     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     26   3.66283  0.10585  3.70202  2.99357     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     27   3.29641  2.72699  3.33646  0.14849     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     28   3.66283  0.10585  3.70202  2.99357     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     29   1.22589  2.72482  0.56994  2.58517     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     30   2.57847  1.17628  2.64686  0.60731     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     31   3.03660  3.50808  0.11130  3.59791     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     32   2.87089  0.28327  2.66540  2.11638     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     33   0.11797  3.58132  2.93141  3.50261     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     34   3.29641  2.72699  3.33646  0.14849     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     35   3.66283  0.10585  3.70202  2.99357     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     36   3.08319  3.78761  0.09744  3.71385     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     37   0.11797  3.58132  2.93141  3.50261     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     38   3.29641  2.72699  3.33646  0.14849     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     39   3.08319  3.78761  0.09744  3.71385     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     40   0.11797  3.58132  2.93141  3.50261     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     41   0.14845  3.13087  2.85707  3.30125     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     42   3.08319  3.78761  0.09744  3.71385     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     43   0.11797  3.58132  2.93141  3.50261     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     44   0.11797  3.58132  2.93141  3.50261     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
+     45   3.66283  0.10585  3.70202  2.99357     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01646  4.11521        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twentythreea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:26:34 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2259417781
+STATS LOCAL MSV       -7.6133  0.72781
+STATS LOCAL VITERBI   -8.2844  0.72781
+STATS LOCAL FORWARD   -3.9462  0.72781
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33950  1.52792  1.26007  1.43800
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.81865  0.23582  2.88868  2.35662     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.53331  3.02441  0.20344  2.88069     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   0.23862  2.84929  2.43386  2.70756     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twentythreeb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:26:41 2012
+NSEQ  43
+EFFN  3.760925
+CKSUM 3682624133
+STATS LOCAL MSV       -7.3174  0.71933
+STATS LOCAL VITERBI   -7.6672  0.71933
+STATS LOCAL FORWARD   -4.3209  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.31564  1.59503  1.29739  1.36433
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  0.00000        *
+      1   1.83504  0.73322  2.26296  1.36261      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+      2   3.22243  2.68004  3.26539  0.15853      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+      3   0.12580  3.51085  2.88617  3.42515      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+      4   3.03658  3.71852  0.10380  3.63715      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+      5   3.58284  0.11369  3.62571  2.93680      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+      6   2.89860  1.95235  2.95493  0.28651      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+      7   3.22243  2.68004  3.26539  0.15853      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+      8   2.49156  0.79132  2.56312  0.94956      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+      9   0.12580  3.51085  2.88617  3.42515      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     10   3.03658  3.71852  0.10380  3.63715     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     11   3.58284  0.11369  3.62571  2.93680     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     12   3.03658  3.71852  0.10380  3.63715     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     13   0.12580  3.51085  2.88617  3.42515     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     14   3.22243  2.68004  3.26539  0.15853     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     15   3.03658  3.71852  0.10380  3.63715     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     16   3.03658  3.71852  0.10380  3.63715     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     17   0.12580  3.51085  2.88617  3.42515     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     18   3.22243  2.68004  3.26539  0.15853     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     19   3.58284  0.11369  3.62571  2.93680     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     20   3.03658  3.71852  0.10380  3.63715     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     21   3.03658  3.71852  0.10380  3.63715     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     22   3.22243  2.68004  3.26539  0.15853     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     23   2.49781  1.06169  2.56808  0.70283     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     24   3.03658  3.71852  0.10380  3.63715     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     25   0.12580  3.51085  2.88617  3.42515     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     26   3.22243  2.68004  3.26539  0.15853     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     27   3.22243  2.68004  3.26539  0.15853     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     28   3.29640  0.15708  3.05878  2.79028     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     29   3.03658  3.71852  0.10380  3.63715     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     30   3.58284  0.11369  3.62571  2.93680     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     31   3.03658  3.71852  0.10380  3.63715     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     32   3.22243  2.68004  3.26539  0.15853     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     33   0.12580  3.51085  2.88617  3.42515     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     34   3.22243  2.68004  3.26539  0.15853     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     35   3.58284  0.11369  3.62571  2.93680     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     36   3.03658  3.71852  0.10380  3.63715     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     37   0.12580  3.51085  2.88617  3.42515     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     38   3.22243  2.68004  3.26539  0.15853     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     39   3.03658  3.71852  0.10380  3.63715     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     40   0.12580  3.51085  2.88617  3.42515     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     41   0.12580  3.51085  2.88617  3.42515     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     42   0.12580  3.51085  2.88617  3.42515     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     43   0.12580  3.51085  2.88617  3.42515     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     44   0.12580  3.51085  2.88617  3.42515     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
+     45   3.58284  0.11369  3.62571  2.93680     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01721  4.07089        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_twentytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:26:26 2012
+NSEQ  7
+EFFN  3.243652
+CKSUM 1514906456
+STATS LOCAL MSV       -7.9402  0.71932
+STATS LOCAL VITERBI   -7.5897  0.71932
+STATS LOCAL FORWARD   -4.2164  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16403  1.39200  1.52407  1.50791
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  0.00000        *
+      1   3.40354  0.13379  3.45424  2.80742      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+      2   0.14533  3.35462  2.78524  3.25387      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+      3   3.06280  2.57871  3.11194  0.18289      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+      4   3.40354  0.13379  3.45424  2.80742      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+      5   3.06280  2.57871  3.11194  0.18289      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+      6   3.06280  2.57871  3.11194  0.18289      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+      7   3.40354  0.13379  3.45424  2.80742      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+      8   0.14533  3.35462  2.78524  3.25387      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+      9   0.14533  3.35462  2.78524  3.25387      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     10   2.92956  3.56167  0.12005  3.46366     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     11   3.40354  0.13379  3.45424  2.80742     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     12   2.92956  3.56167  0.12005  3.46366     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     13   2.92956  3.56167  0.12005  3.46366     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     14   3.06280  2.57871  3.11194  0.18289     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     15   2.92956  3.56167  0.12005  3.46366     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     16   2.92956  3.56167  0.12005  3.46366     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     17   0.14533  3.35462  2.78524  3.25387     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     18   3.06280  2.57871  3.11194  0.18289     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     19   3.40354  0.13379  3.45424  2.80742     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     20   0.14533  3.35462  2.78524  3.25387     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     21   3.40354  0.13379  3.45424  2.80742     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     22   3.06280  2.57871  3.11194  0.18289     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     23   3.40354  0.13379  3.45424  2.80742     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     24   2.92956  3.56167  0.12005  3.46366     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     25   0.14533  3.35462  2.78524  3.25387     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     26   0.14533  3.35462  2.78524  3.25387     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     27   3.06280  2.57871  3.11194  0.18289     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     28   3.06280  2.57871  3.11194  0.18289     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     29   0.14533  3.35462  2.78524  3.25387     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     30   3.40354  0.13379  3.45424  2.80742     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     31   3.40354  0.13379  3.45424  2.80742     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     32   0.14533  3.35462  2.78524  3.25387     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     33   0.14533  3.35462  2.78524  3.25387     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     34   3.06280  2.57871  3.11194  0.18289     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     35   3.40354  0.13379  3.45424  2.80742     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     36   2.92956  3.56167  0.12005  3.46366     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     37   0.14533  3.35462  2.78524  3.25387     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     38   3.06280  2.57871  3.11194  0.18289     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     39   2.92956  3.56167  0.12005  3.46366     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     40   0.14533  3.35462  2.78524  3.25387     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     41   0.14533  3.35462  2.78524  3.25387     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     42   2.92956  3.56167  0.12005  3.46366     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     43   0.14533  3.35462  2.78524  3.25387     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     44   0.14533  3.35462  2.78524  3.25387     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
+     45   3.40354  0.13379  3.45424  2.80742     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01889  3.97849        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Metazoa_58S_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 24 23:13:55 2012
+NSEQ  14
+EFFN  3.270996
+CKSUM 1407752784
+STATS LOCAL MSV       -8.0890  0.71933
+STATS LOCAL VITERBI   -7.5797  0.71933
+STATS LOCAL FORWARD   -4.1354  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39927  1.44999  1.19129  1.53795
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  0.00000        *
+      1   2.46772  1.29197  2.53721  0.57731      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+      2   3.41386  0.13253  3.46414  2.81497      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+      3   0.14412  3.36357  2.79107  3.26366      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+      4   3.07179  2.58444  3.12059  0.18141      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+      5   3.07179  2.58444  3.12059  0.18141      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+      6   3.41386  0.13253  3.46414  2.81497      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+      7   3.07179  2.58444  3.12059  0.18141      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+      8   0.14412  3.36357  2.79107  3.26366      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+      9   0.14412  3.36357  2.79107  3.26366      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     10   2.93585  3.57079  0.11903  3.47371     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     11   3.41386  0.13253  3.46414  2.81497     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     12   2.93585  3.57079  0.11903  3.47371     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     13   2.93585  3.57079  0.11903  3.47371     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     14   3.07179  2.58444  3.12059  0.18141     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     15   2.93585  3.57079  0.11903  3.47371     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     16   2.93585  3.57079  0.11903  3.47371     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     17   0.14412  3.36357  2.79107  3.26366     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     18   3.07179  2.58444  3.12059  0.18141     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     19   3.41386  0.13253  3.46414  2.81497     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     20   0.14412  3.36357  2.79107  3.26366     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     21   3.41386  0.13253  3.46414  2.81497     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     22   3.07179  2.58444  3.12059  0.18141     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     23   0.14412  3.36357  2.79107  3.26366     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     24   2.93585  3.57079  0.11903  3.47371     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     25   2.93585  3.57079  0.11903  3.47371     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     26   3.41386  0.13253  3.46414  2.81497     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     27   3.07179  2.58444  3.12059  0.18141     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     28   3.41386  0.13253  3.46414  2.81497     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     29   2.93585  3.57079  0.11903  3.47371     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     30   3.41386  0.13253  3.46414  2.81497     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     31   2.93585  3.57079  0.11903  3.47371     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     32   2.93585  3.57079  0.11903  3.47371     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     33   2.93585  3.57079  0.11903  3.47371     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     34   3.07179  2.58444  3.12059  0.18141     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     35   3.41386  0.13253  3.46414  2.81497     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     36   2.93585  3.57079  0.11903  3.47371     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     37   0.14412  3.36357  2.79107  3.26366     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     38   3.07179  2.58444  3.12059  0.18141     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     39   2.93585  3.57079  0.11903  3.47371     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     40   0.14412  3.36357  2.79107  3.26366     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     41   0.14412  3.36357  2.79107  3.26366     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     42   2.93585  3.57079  0.11903  3.47371     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     43   0.14412  3.36357  2.79107  3.26366     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     44   0.14412  3.36357  2.79107  3.26366     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
+     45   3.41386  0.13253  3.46414  2.81497     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01879  3.98360        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_eighta_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:56:10 2012
+NSEQ  23
+EFFN  3.433716
+CKSUM 4182898010
+STATS LOCAL MSV       -7.6415  0.71931
+STATS LOCAL VITERBI   -7.6023  0.71931
+STATS LOCAL FORWARD   -3.9207  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.12569  1.21534  1.78132  1.55804
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  0.00000        *
+      1   3.12398  2.61761  3.17077  0.17308      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+      2   3.12398  2.61761  3.17077  0.17308      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+      3   0.13737  3.41516  2.82454  3.32015      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+      4   3.47328  0.12552  3.52102  2.85815      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+      5   2.97172  3.62305  0.11337  3.53141      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+      6   0.13737  3.41516  2.82454  3.32015      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+      7   3.47328  0.12552  3.52102  2.85815      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+      8   3.47328  0.12552  3.52102  2.85815      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+      9   3.12398  2.61761  3.17077  0.17308      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     10   3.47328  0.12552  3.52102  2.85815     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     11   0.13737  3.41516  2.82454  3.32015     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     12   0.13737  3.41516  2.82454  3.32015     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     13   3.47328  0.12552  3.52102  2.85815     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     14   3.12398  2.61761  3.17077  0.17308     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     15   3.47328  0.12552  3.52102  2.85815     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     16   0.13737  3.41516  2.82454  3.32015     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     17   0.13737  3.41516  2.82454  3.32015     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     18   2.97172  3.62305  0.11337  3.53141     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     19   3.47328  0.12552  3.52102  2.85815     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     20   0.13737  3.41516  2.82454  3.32015     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     21   0.13737  3.41516  2.82454  3.32015     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     22   2.97172  3.62305  0.11337  3.53141     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     23   0.46297  2.69963  1.48594  2.56304     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     24   2.73503  0.38530  2.80315  1.63866     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     25   3.12398  2.61761  3.17077  0.17308     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     26   0.13737  3.41516  2.82454  3.32015     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     27   3.47328  0.12552  3.52102  2.85815     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     28   3.47328  0.12552  3.52102  2.85815     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     29   3.47328  0.12552  3.52102  2.85815     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     30   2.97172  3.62305  0.11337  3.53141     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     31   3.47328  0.12552  3.52102  2.85815     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     32   3.12398  2.61761  3.17077  0.17308     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     33   2.97172  3.62305  0.11337  3.53141     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     34   0.13737  3.41516  2.82454  3.32015     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     35   0.13737  3.41516  2.82454  3.32015     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     36   3.47328  0.12552  3.52102  2.85815     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     37   3.12398  2.61761  3.17077  0.17308     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     38   3.12398  2.61761  3.17077  0.17308     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     39   0.13737  3.41516  2.82454  3.32015     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     40   0.13737  3.41516  2.82454  3.32015     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     41   2.97172  3.62305  0.11337  3.53141     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     42   3.47328  0.12552  3.52102  2.85815     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     43   0.13737  3.41516  2.82454  3.32015     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     44   3.12398  2.61761  3.17077  0.17308     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     45   0.13737  3.41516  2.82454  3.32015     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01824  4.01344        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_eightc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:56:19 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1363592007
+STATS LOCAL MSV       -7.2798  0.72798
+STATS LOCAL VITERBI   -8.2533  0.72798
+STATS LOCAL FORWARD   -3.3804  0.72798
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.24362  1.24172  1.56866  1.53968
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_eightd_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:56:26 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1020504900
+STATS LOCAL MSV       -7.5516  0.72962
+STATS LOCAL VITERBI   -8.2423  0.72962
+STATS LOCAL FORWARD   -3.4571  0.72962
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.19990  1.38841  1.59960  1.39705
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.92825  2.28391  0.95698  2.13014     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   1.03732  1.95876  1.96551  1.00928     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_eighte_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:56:33 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 868517852
+STATS LOCAL MSV       -7.3772  0.72815
+STATS LOCAL VITERBI   -8.2352  0.72815
+STATS LOCAL FORWARD   -3.3266  0.72815
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.14885  1.24042  1.72116  1.53769
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_eighteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:59:33 2012
+NSEQ  15
+EFFN  3.431396
+CKSUM 2285872056
+STATS LOCAL MSV       -7.7397  0.71932
+STATS LOCAL VITERBI   -7.5822  0.71932
+STATS LOCAL FORWARD   -4.2073  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26609  1.33300  1.52381  1.44179
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  0.00000        *
+      1   2.68612  1.69220  2.74910  0.38015      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+      2   1.74335  0.46305  2.47031  2.19692      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+      3   3.12325  2.61715  3.17007  0.17319      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+      4   3.12325  2.61715  3.17007  0.17319      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+      5   2.97122  3.62232  0.11345  3.53061      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+      6   0.13746  3.41445  2.82408  3.31937      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+      7   3.47246  0.12561  3.52023  2.85755      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+      8   3.47246  0.12561  3.52023  2.85755      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+      9   3.12325  2.61715  3.17007  0.17319      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     10   3.47246  0.12561  3.52023  2.85755     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     11   0.13746  3.41445  2.82408  3.31937     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     12   2.97122  3.62232  0.11345  3.53061     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     13   0.13746  3.41445  2.82408  3.31937     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     14   3.12325  2.61715  3.17007  0.17319     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     15   3.47246  0.12561  3.52023  2.85755     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     16   0.13746  3.41445  2.82408  3.31937     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     17   2.97122  3.62232  0.11345  3.53061     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     18   2.97122  3.62232  0.11345  3.53061     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     19   3.47246  0.12561  3.52023  2.85755     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     20   0.13746  3.41445  2.82408  3.31937     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     21   0.13746  3.41445  2.82408  3.31937     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     22   2.97122  3.62232  0.11345  3.53061     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     23   2.97122  3.62232  0.11345  3.53061     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     24   3.47246  0.12561  3.52023  2.85755     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     25   3.12325  2.61715  3.17007  0.17319     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     26   0.13746  3.41445  2.82408  3.31937     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     27   3.47246  0.12561  3.52023  2.85755     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     28   3.47246  0.12561  3.52023  2.85755     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     29   3.47246  0.12561  3.52023  2.85755     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     30   2.97122  3.62232  0.11345  3.53061     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     31   3.47246  0.12561  3.52023  2.85755     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     32   3.12325  2.61715  3.17007  0.17319     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     33   2.97122  3.62232  0.11345  3.53061     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     34   0.13746  3.41445  2.82408  3.31937     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     35   0.13746  3.41445  2.82408  3.31937     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     36   3.12325  2.61715  3.17007  0.17319     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     37   3.12325  2.61715  3.17007  0.17319     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     38   3.12325  2.61715  3.17007  0.17319     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     39   0.13746  3.41445  2.82408  3.31937     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     40   0.13746  3.41445  2.82408  3.31937     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     41   2.97122  3.62232  0.11345  3.53061     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     42   3.47246  0.12561  3.52023  2.85755     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     43   0.13746  3.41445  2.82408  3.31937     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     44   3.12325  2.61715  3.17007  0.17319     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
+     45   0.13746  3.41445  2.82408  3.31937     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01824  4.01303        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_eightf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:56:41 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 996407087
+STATS LOCAL MSV       -8.1735  0.72048
+STATS LOCAL VITERBI   -7.7269  0.72048
+STATS LOCAL FORWARD   -3.9301  0.72048
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11576  1.38962  1.68550  1.43626
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   0.15719  3.27118  2.73043  3.16274      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_eightg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:56:47 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 818586296
+STATS LOCAL MSV       -8.0297  0.72074
+STATS LOCAL VITERBI   -7.7589  0.72074
+STATS LOCAL FORWARD   -3.8190  0.72074
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11716  1.25292  1.78063  1.52054
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.43088  1.34923  2.50068  0.56112     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_eleven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:57:18 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1725590445
+STATS LOCAL MSV       -7.5776  0.72814
+STATS LOCAL VITERBI   -8.3322  0.72814
+STATS LOCAL FORWARD   -3.5527  0.72814
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23965  1.39937  1.49627  1.42797
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.81865  0.23582  2.88868  2.35662     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fifteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:58:43 2012
+NSEQ  6
+EFFN  3.237305
+CKSUM 3693209712
+STATS LOCAL MSV       -7.9784  0.71932
+STATS LOCAL VITERBI   -7.6145  0.71932
+STATS LOCAL FORWARD   -4.1523  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28148  1.14624  1.52996  1.67131
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  0.00000        *
+      1   3.40113  0.13409  3.45193  2.80566      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      2   3.06071  2.57738  3.10992  0.18324      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      3   3.40113  0.13409  3.45193  2.80566      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      4   3.40113  0.13409  3.45193  2.80566      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      5   2.92809  3.55954  0.12029  3.46131      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      6   0.14561  3.35254  2.78388  3.25159      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      7   3.40113  0.13409  3.45193  2.80566      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      8   3.40113  0.13409  3.45193  2.80566      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+      9   3.06071  2.57738  3.10992  0.18324      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     10   3.40113  0.13409  3.45193  2.80566     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     11   0.14561  3.35254  2.78388  3.25159     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     12   2.92809  3.55954  0.12029  3.46131     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     13   0.14561  3.35254  2.78388  3.25159     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     14   3.06071  2.57738  3.10992  0.18324     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     15   3.40113  0.13409  3.45193  2.80566     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     16   0.14561  3.35254  2.78388  3.25159     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     17   2.92809  3.55954  0.12029  3.46131     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     18   2.92809  3.55954  0.12029  3.46131     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     19   3.40113  0.13409  3.45193  2.80566     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     20   2.92809  3.55954  0.12029  3.46131     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     21   0.14561  3.35254  2.78388  3.25159     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     22   2.92809  3.55954  0.12029  3.46131     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     23   0.14561  3.35254  2.78388  3.25159     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     24   3.40113  0.13409  3.45193  2.80566     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     25   2.69920  1.80781  2.76119  0.34883     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     26   0.14561  3.35254  2.78388  3.25159     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     27   3.40113  0.13409  3.45193  2.80566     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     28   2.92809  3.55954  0.12029  3.46131     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     29   3.40113  0.13409  3.45193  2.80566     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     30   3.40113  0.13409  3.45193  2.80566     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     31   3.40113  0.13409  3.45193  2.80566     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     32   3.06071  2.57738  3.10992  0.18324     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     33   2.92809  3.55954  0.12029  3.46131     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     34   0.14561  3.35254  2.78388  3.25159     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     35   0.14561  3.35254  2.78388  3.25159     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     36   3.40113  0.13409  3.45193  2.80566     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     37   3.06071  2.57738  3.10992  0.18324     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     38   3.06071  2.57738  3.10992  0.18324     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     39   0.14561  3.35254  2.78388  3.25159     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     40   0.14561  3.35254  2.78388  3.25159     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     41   2.92809  3.55954  0.12029  3.46131     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     42   3.40113  0.13409  3.45193  2.80566     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     43   0.14561  3.35254  2.78388  3.25159     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     44   3.06071  2.57738  3.10992  0.18324     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
+     45   0.14561  3.35254  2.78388  3.25159     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01891  3.97731        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fifty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:39:45 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3588865177
+STATS LOCAL MSV       -7.6416  0.72809
+STATS LOCAL VITERBI   -8.1785  0.72809
+STATS LOCAL FORWARD   -3.3202  0.72809
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29441  1.23704  1.57164  1.47844
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiftyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:41:05 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2941133694
+STATS LOCAL MSV       -8.1652  0.72067
+STATS LOCAL VITERBI   -7.6786  0.72067
+STATS LOCAL FORWARD   -3.8005  0.72067
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16779  1.29306  1.59776  1.55037
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   0.15719  3.27118  2.73043  3.16274     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.43223  0.62271  2.50508  1.22417     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiftyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:40:37 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 169487606
+STATS LOCAL MSV       -7.9297  0.72040
+STATS LOCAL VITERBI   -7.7017  0.72040
+STATS LOCAL FORWARD   -4.0414  0.72040
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28208  1.14532  1.52431  1.67853
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.43088  1.34923  2.50068  0.56112     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.86982  3.47591  0.13017  3.36931     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiftyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:40:28 2012
+NSEQ  4
+EFFN  3.363281
+CKSUM 3978608917
+STATS LOCAL MSV       -8.1693  0.71933
+STATS LOCAL VITERBI   -7.5580  0.71933
+STATS LOCAL FORWARD   -4.1977  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21441  1.30452  1.49557  1.57171
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  0.00000        *
+      1   3.10166  2.60344  3.14932  0.17659      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      2   2.95651  3.60084  0.11574  3.50687      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      3   3.10166  2.60344  3.14932  0.17659      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      4   3.44798  0.12845  3.49681  2.83981      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      5   2.95651  3.60084  0.11574  3.50687      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      6   0.14020  3.39317  2.81030  3.29606      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      7   3.44798  0.12845  3.49681  2.83981      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      8   3.44798  0.12845  3.49681  2.83981      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      9   3.10166  2.60344  3.14932  0.17659      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     10   3.44798  0.12845  3.49681  2.83981     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     11   0.14020  3.39317  2.81030  3.29606     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     12   2.06759  1.02509  0.97430  1.98565     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     13   0.14020  3.39317  2.81030  3.29606     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     14   3.10166  2.60344  3.14932  0.17659     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     15   3.44798  0.12845  3.49681  2.83981     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     16   0.14020  3.39317  2.81030  3.29606     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     17   2.95651  3.60084  0.11574  3.50687     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     18   2.95651  3.60084  0.11574  3.50687     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     19   3.44798  0.12845  3.49681  2.83981     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     20   2.95651  3.60084  0.11574  3.50687     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     21   0.14020  3.39317  2.81030  3.29606     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     22   2.95651  3.60084  0.11574  3.50687     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     23   0.14020  3.39317  2.81030  3.29606     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     24   3.44798  0.12845  3.49681  2.83981     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     25   0.14020  3.39317  2.81030  3.29606     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     26   0.14020  3.39317  2.81030  3.29606     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     27   3.44798  0.12845  3.49681  2.83981     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     28   3.44798  0.12845  3.49681  2.83981     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     29   3.44798  0.12845  3.49681  2.83981     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     30   2.95651  3.60084  0.11574  3.50687     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     31   3.44798  0.12845  3.49681  2.83981     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     32   3.10166  2.60344  3.14932  0.17659     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     33   2.95651  3.60084  0.11574  3.50687     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     34   0.14020  3.39317  2.81030  3.29606     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     35   0.14020  3.39317  2.81030  3.29606     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     36   3.10166  2.60344  3.14932  0.17659     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     37   3.10166  2.60344  3.14932  0.17659     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     38   3.10166  2.60344  3.14932  0.17659     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     39   0.14020  3.39317  2.81030  3.29606     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     40   0.14020  3.39317  2.81030  3.29606     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     41   2.95651  3.60084  0.11574  3.50687     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     42   3.44798  0.12845  3.49681  2.83981     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     43   0.14020  3.39317  2.81030  3.29606     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     44   3.10166  2.60344  3.14932  0.17659     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     45   0.14020  3.39317  2.81030  3.29606     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01847  4.00063        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiftynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:41:16 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1744694786
+STATS LOCAL MSV       -7.9097  0.72088
+STATS LOCAL VITERBI   -7.7741  0.72088
+STATS LOCAL FORWARD   -3.9482  0.72088
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21864  1.51265  1.51502  1.33090
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.43088  1.34923  2.50068  0.56112     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiftyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:39:54 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 7046851
+STATS LOCAL MSV       -7.6652  0.72933
+STATS LOCAL VITERBI   -8.2495  0.72933
+STATS LOCAL FORWARD   -3.3659  0.72933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22961  1.37917  1.44642  1.51234
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   1.88179  1.10717  1.04597  1.79675     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   1.89532  1.96405  1.06955  1.00436     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiftyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:40:55 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1156733467
+STATS LOCAL MSV       -8.0424  0.72110
+STATS LOCAL VITERBI   -7.9132  0.72110
+STATS LOCAL FORWARD   -4.1416  0.72110
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.13098  1.31158  1.66327  1.52155
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.53825  2.56454  1.38402  2.42241      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   0.15719  3.27118  2.73043  3.16274      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.43258  1.35379  2.50233  0.55855     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiftysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:40:47 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 788693777
+STATS LOCAL MSV       -7.4171  0.72882
+STATS LOCAL VITERBI   -8.2608  0.72882
+STATS LOCAL FORWARD   -3.5113  0.72882
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21578  1.39607  1.53509  1.42497
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.92825  2.28391  0.95698  2.13014     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiftythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:40:15 2012
+NSEQ  6
+EFFN  3.770508
+CKSUM 3616590276
+STATS LOCAL MSV       -7.2567  0.71932
+STATS LOCAL VITERBI   -7.6107  0.71932
+STATS LOCAL FORWARD   -4.2424  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22316  1.36172  1.52650  1.46021
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  0.00000        *
+      1   2.25146  2.22866  1.37358  0.62758      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+      2   2.20737  2.32313  0.66481  1.28132      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+      3   2.58882  1.33574  2.65600  0.52476      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+      4   3.58586  0.11338  3.62859  2.93895      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+      5   3.03835  3.72114  0.10355  3.64005      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+      6   0.12549  3.51350  2.88787  3.42806      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+      7   3.58586  0.11338  3.62859  2.93895      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+      8   3.58586  0.11338  3.62859  2.93895      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+      9   3.22519  2.68179  3.26804  0.15814      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     10   3.58586  0.11338  3.62859  2.93895     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     11   0.12549  3.51350  2.88787  3.42806     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     12   3.03835  3.72114  0.10355  3.64005     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     13   0.12549  3.51350  2.88787  3.42806     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     14   3.22519  2.68179  3.26804  0.15814     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     15   3.58586  0.11338  3.62859  2.93895     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     16   0.12549  3.51350  2.88787  3.42806     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     17   3.03835  3.72114  0.10355  3.64005     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     18   0.12549  3.51350  2.88787  3.42806     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     19   3.58586  0.11338  3.62859  2.93895     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     20   3.03835  3.72114  0.10355  3.64005     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     21   0.50286  2.71339  1.37489  2.57673     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     22   3.03835  3.72114  0.10355  3.64005     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     23   0.12549  3.51350  2.88787  3.42806     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     24   3.22519  2.68179  3.26804  0.15814     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     25   3.22519  2.68179  3.26804  0.15814     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     26   0.12549  3.51350  2.88787  3.42806     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     27   3.58586  0.11338  3.62859  2.93895     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     28   3.58586  0.11338  3.62859  2.93895     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     29   3.58586  0.11338  3.62859  2.93895     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     30   3.03835  3.72114  0.10355  3.64005     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     31   3.58586  0.11338  3.62859  2.93895     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     32   3.22519  2.68179  3.26804  0.15814     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     33   3.03835  3.72114  0.10355  3.64005     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     34   0.12549  3.51350  2.88787  3.42806     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     35   0.12549  3.51350  2.88787  3.42806     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     36   3.22519  2.68179  3.26804  0.15814     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     37   3.22519  2.68179  3.26804  0.15814     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     38   3.22519  2.68179  3.26804  0.15814     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     39   0.12549  3.51350  2.88787  3.42806     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     40   0.12549  3.51350  2.88787  3.42806     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     41   3.03835  3.72114  0.10355  3.64005     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     42   3.58586  0.11338  3.62859  2.93895     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     43   0.12549  3.51350  2.88787  3.42806     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     44   3.22519  2.68179  3.26804  0.15814     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
+     45   0.12549  3.51350  2.88787  3.42806     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01718  4.07253        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiftytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:40:04 2012
+NSEQ  4
+EFFN  3.386719
+CKSUM 2343365187
+STATS LOCAL MSV       -7.6766  0.71933
+STATS LOCAL VITERBI   -7.6091  0.71933
+STATS LOCAL FORWARD   -3.8781  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.15940  1.37200  1.52000  1.54170
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  0.00000        *
+      1   3.10913  2.60819  3.15650  0.17540      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      2   3.10913  2.60819  3.15650  0.17540      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      3   2.96162  3.60830  0.11494  3.51511      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      4   3.45647  0.12746  3.50493  2.84597      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      5   2.96162  3.60830  0.11494  3.51511      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      6   0.13925  3.40055  2.81508  3.30414      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      7   3.45647  0.12746  3.50493  2.84597      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      8   3.45647  0.12746  3.50493  2.84597      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      9   3.10913  2.60819  3.15650  0.17540      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     10   3.45647  0.12746  3.50493  2.84597     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     11   0.13925  3.40055  2.81508  3.30414     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     12   2.96162  3.60830  0.11494  3.51511     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     13   0.13925  3.40055  2.81508  3.30414     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     14   2.96162  3.60830  0.11494  3.51511     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     15   3.45647  0.12746  3.50493  2.84597     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     16   0.13925  3.40055  2.81508  3.30414     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     17   2.96162  3.60830  0.11494  3.51511     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     18   2.96162  3.60830  0.11494  3.51511     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     19   3.45647  0.12746  3.50493  2.84597     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     20   0.13925  3.40055  2.81508  3.30414     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     21   0.13925  3.40055  2.81508  3.30414     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     22   2.96162  3.60830  0.11494  3.51511     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     23   0.13925  3.40055  2.81508  3.30414     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     24   2.61564  1.57295  2.68080  0.42934     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     25   3.10913  2.60819  3.15650  0.17540     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     26   0.13925  3.40055  2.81508  3.30414     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     27   3.45647  0.12746  3.50493  2.84597     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     28   3.45647  0.12746  3.50493  2.84597     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     29   3.45647  0.12746  3.50493  2.84597     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     30   2.96162  3.60830  0.11494  3.51511     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     31   3.45647  0.12746  3.50493  2.84597     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     32   2.61564  1.57295  2.68080  0.42934     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     33   0.13925  3.40055  2.81508  3.30414     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     34   0.13925  3.40055  2.81508  3.30414     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     35   0.13925  3.40055  2.81508  3.30414     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     36   3.10913  2.60819  3.15650  0.17540     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     37   3.10913  2.60819  3.15650  0.17540     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     38   3.10913  2.60819  3.15650  0.17540     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     39   0.13925  3.40055  2.81508  3.30414     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     40   0.13925  3.40055  2.81508  3.30414     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     41   2.96162  3.60830  0.11494  3.51511     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     42   3.45647  0.12746  3.50493  2.84597     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     43   0.13925  3.40055  2.81508  3.30414     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     44   3.10913  2.60819  3.15650  0.17540     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     45   0.13925  3.40055  2.81508  3.30414     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01839  4.00492        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fivea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:51:55 2012
+NSEQ  33
+EFFN  3.323364
+CKSUM 2448807355
+STATS LOCAL MSV       -8.2738  0.71933
+STATS LOCAL VITERBI   -7.5799  0.71933
+STATS LOCAL FORWARD   -4.1726  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27412  1.31929  1.52432  1.44720
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  0.00000        *
+      1   2.16430  2.15934  2.34011  0.39534      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+      2   3.43336  0.13018  3.48281  2.82918      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+      3   3.08883  2.59528  3.13698  0.17864      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+      4   3.08883  2.59528  3.13698  0.17864      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+      5   2.94768  3.58798  0.11714  3.49267      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+      6   0.14187  3.38048  2.80207  3.28217      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+      7   3.43336  0.13018  3.48281  2.82918      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+      8   3.43336  0.13018  3.48281  2.82918      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+      9   3.08883  2.59528  3.13698  0.17864      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     10   3.43336  0.13018  3.48281  2.82918     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     11   0.14187  3.38048  2.80207  3.28217     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     12   2.94768  3.58798  0.11714  3.49267     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     13   0.14187  3.38048  2.80207  3.28217     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     14   3.08883  2.59528  3.13698  0.17864     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     15   3.43336  0.13018  3.48281  2.82918     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     16   0.14187  3.38048  2.80207  3.28217     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     17   2.94768  3.58798  0.11714  3.49267     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     18   2.94768  3.58798  0.11714  3.49267     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     19   3.43336  0.13018  3.48281  2.82918     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     20   0.14187  3.38048  2.80207  3.28217     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     21   0.14187  3.38048  2.80207  3.28217     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     22   2.94768  3.58798  0.11714  3.49267     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     23   2.94768  3.58798  0.11714  3.49267     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     24   3.43336  0.13018  3.48281  2.82918     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     25   3.08883  2.59528  3.13698  0.17864     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     26   0.14187  3.38048  2.80207  3.28217     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     27   3.43336  0.13018  3.48281  2.82918     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     28   3.43336  0.13018  3.48281  2.82918     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     29   3.43336  0.13018  3.48281  2.82918     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     30   2.94768  3.58798  0.11714  3.49267     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     31   3.43336  0.13018  3.48281  2.82918     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     32   3.08883  2.59528  3.13698  0.17864     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     33   2.94768  3.58798  0.11714  3.49267     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     34   0.14187  3.38048  2.80207  3.28217     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     35   0.14187  3.38048  2.80207  3.28217     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     36   3.08883  2.59528  3.13698  0.17864     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     37   3.08883  2.59528  3.13698  0.17864     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     38   3.08883  2.59528  3.13698  0.17864     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     39   0.14187  3.38048  2.80207  3.28217     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     40   0.14187  3.38048  2.80207  3.28217     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     41   2.94768  3.58798  0.11714  3.49267     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     42   3.43336  0.13018  3.48281  2.82918     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     43   0.14187  3.38048  2.80207  3.28217     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     44   3.08883  2.59528  3.13698  0.17864     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
+     45   0.14187  3.38048  2.80207  3.28217     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01861  3.99330        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiveb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:52:02 2012
+NSEQ  6
+EFFN  3.290039
+CKSUM 1095388467
+STATS LOCAL MSV       -8.1640  0.71933
+STATS LOCAL VITERBI   -7.6720  0.71933
+STATS LOCAL FORWARD   -4.1206  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22038  1.38745  1.60911  1.36608
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  0.00000        *
+      1   3.07802  2.58840  3.12657  0.18039      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+      2   3.07802  2.58840  3.12657  0.18039      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+      3   3.07802  2.58840  3.12657  0.18039      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+      4   3.07802  2.58840  3.12657  0.18039      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+      5   2.94018  3.57708  0.11833  3.48065      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+      6   0.14329  3.36976  2.79509  3.27043      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+      7   3.42100  0.13166  3.47097  2.82017      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+      8   3.42100  0.13166  3.47097  2.82017      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+      9   3.07802  2.58840  3.12657  0.18039      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     10   3.42100  0.13166  3.47097  2.82017     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     11   0.14329  3.36976  2.79509  3.27043     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     12   2.94018  3.57708  0.11833  3.48065     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     13   0.14329  3.36976  2.79509  3.27043     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     14   3.07802  2.58840  3.12657  0.18039     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     15   3.42100  0.13166  3.47097  2.82017     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     16   0.14329  3.36976  2.79509  3.27043     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     17   2.94018  3.57708  0.11833  3.48065     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     18   2.94018  3.57708  0.11833  3.48065     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     19   3.42100  0.13166  3.47097  2.82017     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     20   0.14329  3.36976  2.79509  3.27043     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     21   0.14329  3.36976  2.79509  3.27043     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     22   2.94018  3.57708  0.11833  3.48065     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     23   0.14329  3.36976  2.79509  3.27043     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     24   3.42100  0.13166  3.47097  2.82017     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     25   3.07802  2.58840  3.12657  0.18039     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     26   0.14329  3.36976  2.79509  3.27043     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     27   3.42100  0.13166  3.47097  2.82017     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     28   3.42100  0.13166  3.47097  2.82017     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     29   3.42100  0.13166  3.47097  2.82017     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     30   2.94018  3.57708  0.11833  3.48065     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     31   3.42100  0.13166  3.47097  2.82017     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     32   3.07802  2.58840  3.12657  0.18039     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     33   2.94018  3.57708  0.11833  3.48065     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     34   0.14329  3.36976  2.79509  3.27043     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     35   0.14329  3.36976  2.79509  3.27043     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     36   3.07802  2.58840  3.12657  0.18039     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     37   3.07802  2.58840  3.12657  0.18039     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     38   3.07802  2.58840  3.12657  0.18039     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     39   0.14329  3.36976  2.79509  3.27043     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     40   0.14329  3.36976  2.79509  3.27043     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     41   2.94018  3.57708  0.11833  3.48065     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     42   3.42100  0.13166  3.47097  2.82017     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     43   0.14329  3.36976  2.79509  3.27043     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     44   3.07802  2.58840  3.12657  0.18039     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
+     45   0.14329  3.36976  2.79509  3.27043     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01873  3.98714        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fivec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:52:10 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 414395773
+STATS LOCAL MSV       -8.1682  0.72059
+STATS LOCAL VITERBI   -7.7080  0.72059
+STATS LOCAL FORWARD   -4.1086  0.72059
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39094  1.26436  1.40758  1.49610
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   1.34853  2.58976  0.54705  2.44542     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   3.30705  0.14631  3.36166  2.73626     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fived_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:52:18 2012
+NSEQ  4
+EFFN  3.589844
+CKSUM 1898865493
+STATS LOCAL MSV       -7.7769  0.71931
+STATS LOCAL VITERBI   -7.5481  0.71931
+STATS LOCAL FORWARD   -4.2512  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28279  1.32952  1.52116  1.42847
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  0.00000        *
+      1   2.65559  1.56074  2.72005  0.42482      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+      2   1.56999  0.53851  2.39137  2.14706      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+      3   3.17200  2.64808  3.21693  0.16580      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+      4   3.17200  2.64808  3.21693  0.16580      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+      5   3.00379  3.67013  0.10853  3.58350      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+      6   0.13155  3.46211  2.85483  3.37163      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+      7   3.52715  0.11953  3.57252  2.89697      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+      8   3.52715  0.11953  3.57252  2.89697      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+      9   3.17200  2.64808  3.21693  0.16580      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     10   3.52715  0.11953  3.57252  2.89697     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     11   0.13155  3.46211  2.85483  3.37163     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     12   3.00379  3.67013  0.10853  3.58350     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     13   0.13155  3.46211  2.85483  3.37163     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     14   3.17200  2.64808  3.21693  0.16580     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     15   3.52715  0.11953  3.57252  2.89697     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     16   0.13155  3.46211  2.85483  3.37163     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     17   3.00379  3.67013  0.10853  3.58350     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     18   3.00379  3.67013  0.10853  3.58350     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     19   3.52715  0.11953  3.57252  2.89697     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     20   0.13155  3.46211  2.85483  3.37163     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     21   0.13155  3.46211  2.85483  3.37163     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     22   3.00379  3.67013  0.10853  3.58350     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     23   3.00379  3.67013  0.10853  3.58350     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     24   3.52715  0.11953  3.57252  2.89697     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     25   3.17200  2.64808  3.21693  0.16580     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     26   0.13155  3.46211  2.85483  3.37163     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     27   3.52715  0.11953  3.57252  2.89697     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     28   3.52715  0.11953  3.57252  2.89697     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     29   3.52715  0.11953  3.57252  2.89697     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     30   3.00379  3.67013  0.10853  3.58350     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     31   3.52715  0.11953  3.57252  2.89697     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     32   3.17200  2.64808  3.21693  0.16580     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     33   3.00379  3.67013  0.10853  3.58350     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     34   0.51549  2.41965  2.31139  1.53844     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     35   0.13155  3.46211  2.85483  3.37163     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     36   3.17200  2.64808  3.21693  0.16580     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     37   3.17200  2.64808  3.21693  0.16580     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     38   3.17200  2.64808  3.21693  0.16580     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     39   0.13155  3.46211  2.85483  3.37163     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     40   0.13155  3.46211  2.85483  3.37163     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     41   3.00379  3.67013  0.10853  3.58350     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     42   3.52715  0.11953  3.57252  2.89697     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     43   0.13155  3.46211  2.85483  3.37163     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     44   3.17200  2.64808  3.21693  0.16580     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
+     45   0.13155  3.46211  2.85483  3.37163     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01773  4.04127        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fivee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:52:24 2012
+NSEQ  18
+EFFN  3.440918
+CKSUM 2904005102
+STATS LOCAL MSV       -7.8258  0.71932
+STATS LOCAL VITERBI   -7.5534  0.71932
+STATS LOCAL FORWARD   -4.0810  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.15979  1.37418  1.69811  1.38480
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  0.00000        *
+      1   2.65643  1.62968  2.72042  0.40352      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+      2   3.22289  0.18400  3.27858  2.40191      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+      3   3.12623  2.61905  3.17294  0.17273      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+      4   3.12623  2.61905  3.17294  0.17273      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+      5   0.13709  3.41738  2.82598  3.32258      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+      6   0.13709  3.41738  2.82598  3.32258      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+      7   3.47583  0.12523  3.52346  2.85999      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+      8   3.47583  0.12523  3.52346  2.85999      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+      9   3.12623  2.61905  3.17294  0.17273      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     10   3.47583  0.12523  3.52346  2.85999     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     11   0.13709  3.41738  2.82598  3.32258     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     12   2.97325  3.62528  0.11314  3.53388     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     13   0.13709  3.41738  2.82598  3.32258     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     14   3.12623  2.61905  3.17294  0.17273     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     15   3.47583  0.12523  3.52346  2.85999     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     16   0.13709  3.41738  2.82598  3.32258     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     17   2.97325  3.62528  0.11314  3.53388     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     18   2.97325  3.62528  0.11314  3.53388     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     19   3.47583  0.12523  3.52346  2.85999     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     20   0.13709  3.41738  2.82598  3.32258     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     21   0.13709  3.41738  2.82598  3.32258     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     22   2.97325  3.62528  0.11314  3.53388     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     23   0.13709  3.41738  2.82598  3.32258     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     24   2.85715  2.02037  2.91409  0.28010     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     25   3.12623  2.61905  3.17294  0.17273     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     26   0.13709  3.41738  2.82598  3.32258     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     27   3.47583  0.12523  3.52346  2.85999     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     28   3.47583  0.12523  3.52346  2.85999     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     29   3.47583  0.12523  3.52346  2.85999     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     30   2.97325  3.62528  0.11314  3.53388     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     31   3.47583  0.12523  3.52346  2.85999     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     32   3.12623  2.61905  3.17294  0.17273     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     33   2.97325  3.62528  0.11314  3.53388     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     34   0.13709  3.41738  2.82598  3.32258     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     35   0.13709  3.41738  2.82598  3.32258     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     36   3.12623  2.61905  3.17294  0.17273     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     37   3.12623  2.61905  3.17294  0.17273     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     38   3.12623  2.61905  3.17294  0.17273     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     39   0.13709  3.41738  2.82598  3.32258     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     40   0.13709  3.41738  2.82598  3.32258     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     41   2.97325  3.62528  0.11314  3.53388     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     42   3.47583  0.12523  3.52346  2.85999     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     43   0.13709  3.41738  2.82598  3.32258     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     44   3.12623  2.61905  3.17294  0.17273     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
+     45   0.13709  3.41738  2.82598  3.32258     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01821  4.01475        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fivef_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:52:31 2012
+NSEQ  4
+EFFN  3.238281
+CKSUM 218697528
+STATS LOCAL MSV       -8.1769  0.71931
+STATS LOCAL VITERBI   -7.6530  0.71931
+STATS LOCAL FORWARD   -4.0168  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11219  1.32828  1.60560  1.58251
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  0.00000        *
+      1   3.40150  0.13404  3.45229  2.80593      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      2   0.14557  3.35286  2.78409  3.25194      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      3   0.14557  3.35286  2.78409  3.25194      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      4   3.06103  2.57758  3.11024  0.18319      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      5   2.92831  3.55987  0.12026  3.46167      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      6   0.14557  3.35286  2.78409  3.25194      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      7   3.40150  0.13404  3.45229  2.80593      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      8   3.40150  0.13404  3.45229  2.80593      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+      9   3.06103  2.57758  3.11024  0.18319      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     10   3.40150  0.13404  3.45229  2.80593     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     11   0.14557  3.35286  2.78409  3.25194     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     12   2.92831  3.55987  0.12026  3.46167     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     13   0.14557  3.35286  2.78409  3.25194     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     14   3.06103  2.57758  3.11024  0.18319     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     15   3.40150  0.13404  3.45229  2.80593     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     16   0.14557  3.35286  2.78409  3.25194     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     17   2.92831  3.55987  0.12026  3.46167     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     18   2.92831  3.55987  0.12026  3.46167     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     19   3.40150  0.13404  3.45229  2.80593     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     20   0.14557  3.35286  2.78409  3.25194     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     21   0.14557  3.35286  2.78409  3.25194     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     22   2.92831  3.55987  0.12026  3.46167     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     23   0.14557  3.35286  2.78409  3.25194     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     24   3.40150  0.13404  3.45229  2.80593     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     25   3.06103  2.57758  3.11024  0.18319     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     26   0.14557  3.35286  2.78409  3.25194     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     27   3.40150  0.13404  3.45229  2.80593     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     28   3.40150  0.13404  3.45229  2.80593     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     29   3.40150  0.13404  3.45229  2.80593     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     30   2.92831  3.55987  0.12026  3.46167     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     31   3.40150  0.13404  3.45229  2.80593     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     32   3.06103  2.57758  3.11024  0.18319     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     33   2.92831  3.55987  0.12026  3.46167     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     34   0.14557  3.35286  2.78409  3.25194     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     35   0.14557  3.35286  2.78409  3.25194     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     36   3.06103  2.57758  3.11024  0.18319     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     37   3.06103  2.57758  3.11024  0.18319     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     38   3.06103  2.57758  3.11024  0.18319     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     39   0.14557  3.35286  2.78409  3.25194     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     40   0.14557  3.35286  2.78409  3.25194     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     41   2.92831  3.55987  0.12026  3.46167     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     42   3.40150  0.13404  3.45229  2.80593     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     43   0.14557  3.35286  2.78409  3.25194     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     44   3.06103  2.57758  3.11024  0.18319     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
+     45   0.14557  3.35286  2.78409  3.25194     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01891  3.97749        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiveg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:52:38 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 117876825
+STATS LOCAL MSV       -8.1355  0.72022
+STATS LOCAL VITERBI   -7.5293  0.72022
+STATS LOCAL FORWARD   -4.1705  0.72022
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22000  1.46772  1.37224  1.51058
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiveh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:52:44 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3959841855
+STATS LOCAL MSV       -7.8534  0.72044
+STATS LOCAL VITERBI   -7.7389  0.72044
+STATS LOCAL FORWARD   -4.0256  0.72044
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16687  1.25924  1.51839  1.68347
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.43088  1.34923  2.50068  0.56112      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   0.15719  3.27118  2.73043  3.16274      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fivei_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:52:50 2012
+NSEQ  4
+EFFN  3.292969
+CKSUM 2067499997
+STATS LOCAL MSV       -8.3581  0.71933
+STATS LOCAL VITERBI   -7.5385  0.71933
+STATS LOCAL FORWARD   -4.2980  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39697  1.26146  1.40117  1.50011
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  0.00000        *
+      1   3.07897  2.58901  3.12749  0.18024      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      2   3.42209  0.13153  3.47201  2.82097      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      3   3.07897  2.58901  3.12749  0.18024      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      4   1.65496  2.81433  0.38529  2.67796      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      5   2.94085  3.57805  0.11823  3.48171      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      6   0.14316  3.37070  2.79571  3.27146      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      7   3.42209  0.13153  3.47201  2.82097      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      8   3.42209  0.13153  3.47201  2.82097      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      9   3.07897  2.58901  3.12749  0.18024      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     10   3.42209  0.13153  3.47201  2.82097     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     11   2.94085  3.57805  0.11823  3.48171     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     12   2.94085  3.57805  0.11823  3.48171     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     13   0.14316  3.37070  2.79571  3.27146     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     14   3.07897  2.58901  3.12749  0.18024     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     15   3.42209  0.13153  3.47201  2.82097     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     16   0.14316  3.37070  2.79571  3.27146     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     17   2.94085  3.57805  0.11823  3.48171     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     18   2.94085  3.57805  0.11823  3.48171     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     19   3.42209  0.13153  3.47201  2.82097     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     20   3.42209  0.13153  3.47201  2.82097     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     21   0.14316  3.37070  2.79571  3.27146     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     22   2.94085  3.57805  0.11823  3.48171     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     23   2.94085  3.57805  0.11823  3.48171     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     24   3.42209  0.13153  3.47201  2.82097     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     25   3.07897  2.58901  3.12749  0.18024     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     26   0.14316  3.37070  2.79571  3.27146     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     27   3.42209  0.13153  3.47201  2.82097     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     28   3.42209  0.13153  3.47201  2.82097     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     29   3.42209  0.13153  3.47201  2.82097     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     30   2.94085  3.57805  0.11823  3.48171     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     31   3.42209  0.13153  3.47201  2.82097     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     32   3.07897  2.58901  3.12749  0.18024     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     33   2.94085  3.57805  0.11823  3.48171     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     34   0.14316  3.37070  2.79571  3.27146     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     35   0.14316  3.37070  2.79571  3.27146     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     36   3.07897  2.58901  3.12749  0.18024     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     37   3.07897  2.58901  3.12749  0.18024     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     38   3.07897  2.58901  3.12749  0.18024     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     39   0.14316  3.37070  2.79571  3.27146     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     40   0.14316  3.37070  2.79571  3.27146     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     41   2.94085  3.57805  0.11823  3.48171     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     42   3.42209  0.13153  3.47201  2.82097     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     43   0.14316  3.37070  2.79571  3.27146     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     44   3.07897  2.58901  3.12749  0.18024     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     45   0.14316  3.37070  2.79571  3.27146     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01872  3.98768        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fivej_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:52:57 2012
+NSEQ  14
+EFFN  3.216309
+CKSUM 1938204490
+STATS LOCAL MSV       -8.1797  0.71931
+STATS LOCAL VITERBI   -7.6430  0.71931
+STATS LOCAL FORWARD   -3.9981  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.41013  1.20320  1.45583  1.50305
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  0.00000        *
+      1   3.39312  0.13508  3.44425  2.79979      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      2   3.39312  0.13508  3.44425  2.79979      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      3   3.05375  2.57294  3.10323  0.18440      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      4   2.92319  3.55246  0.12110  3.45350      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      5   2.92319  3.55246  0.12110  3.45350      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      6   0.14656  3.34560  2.77935  3.24400      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      7   3.39312  0.13508  3.44425  2.79979      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      8   3.39312  0.13508  3.44425  2.79979      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      9   3.05375  2.57294  3.10323  0.18440      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     10   3.39312  0.13508  3.44425  2.79979     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     11   0.14656  3.34560  2.77935  3.24400     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     12   2.92319  3.55246  0.12110  3.45350     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     13   3.39312  0.13508  3.44425  2.79979     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     14   3.05375  2.57294  3.10323  0.18440     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     15   3.39312  0.13508  3.44425  2.79979     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     16   0.14656  3.34560  2.77935  3.24400     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     17   2.92319  3.55246  0.12110  3.45350     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     18   2.92319  3.55246  0.12110  3.45350     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     19   3.39312  0.13508  3.44425  2.79979     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     20   2.92319  3.55246  0.12110  3.45350     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     21   3.05375  2.57294  3.10323  0.18440     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     22   2.92319  3.55246  0.12110  3.45350     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     23   0.14656  3.34560  2.77935  3.24400     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     24   3.39312  0.13508  3.44425  2.79979     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     25   3.05375  2.57294  3.10323  0.18440     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     26   0.14656  3.34560  2.77935  3.24400     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     27   3.39312  0.13508  3.44425  2.79979     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     28   3.39312  0.13508  3.44425  2.79979     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     29   3.39312  0.13508  3.44425  2.79979     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     30   2.92319  3.55246  0.12110  3.45350     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     31   3.39312  0.13508  3.44425  2.79979     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     32   3.05375  2.57294  3.10323  0.18440     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     33   2.92319  3.55246  0.12110  3.45350     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     34   0.14656  3.34560  2.77935  3.24400     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     35   0.14656  3.34560  2.77935  3.24400     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     36   3.05375  2.57294  3.10323  0.18440     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     37   3.05375  2.57294  3.10323  0.18440     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     38   3.05375  2.57294  3.10323  0.18440     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     39   0.14656  3.34560  2.77935  3.24400     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     40   0.14656  3.34560  2.77935  3.24400     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     41   2.92319  3.55246  0.12110  3.45350     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     42   3.39312  0.13508  3.44425  2.79979     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     43   0.14656  3.34560  2.77935  3.24400     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     44   3.05375  2.57294  3.10323  0.18440     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     45   0.14656  3.34560  2.77935  3.24400     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01899  3.97336        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fivek_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:53:04 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 538974717
+STATS LOCAL MSV       -7.4755  0.72790
+STATS LOCAL VITERBI   -8.1493  0.72790
+STATS LOCAL FORWARD   -3.5738  0.72790
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.24234  1.29073  1.49936  1.54671
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fivel_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:53:11 2012
+NSEQ  4
+EFFN  3.246094
+CKSUM 3448565070
+STATS LOCAL MSV       -8.1840  0.71933
+STATS LOCAL VITERBI   -7.6695  0.71933
+STATS LOCAL FORWARD   -4.1138  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27844  1.38903  1.45039  1.43662
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  0.00000        *
+      1   3.40447  0.13368  3.45513  2.80810      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      2   3.06361  2.57923  3.11272  0.18276      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      3   3.06361  2.57923  3.11272  0.18276      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      4   3.40447  0.13368  3.45513  2.80810      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      5   2.93012  3.56249  0.11996  3.46456      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      6   0.14522  3.35543  2.78576  3.25475      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      7   3.40447  0.13368  3.45513  2.80810      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      8   3.40447  0.13368  3.45513  2.80810      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      9   3.06361  2.57923  3.11272  0.18276      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     10   2.93012  3.56249  0.11996  3.46456     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     11   0.14522  3.35543  2.78576  3.25475     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     12   2.93012  3.56249  0.11996  3.46456     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     13   0.14522  3.35543  2.78576  3.25475     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     14   3.06361  2.57923  3.11272  0.18276     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     15   3.40447  0.13368  3.45513  2.80810     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     16   2.93012  3.56249  0.11996  3.46456     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     17   2.93012  3.56249  0.11996  3.46456     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     18   0.14522  3.35543  2.78576  3.25475     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     19   3.40447  0.13368  3.45513  2.80810     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     20   2.93012  3.56249  0.11996  3.46456     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     21   0.14522  3.35543  2.78576  3.25475     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     22   2.93012  3.56249  0.11996  3.46456     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     23   0.14522  3.35543  2.78576  3.25475     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     24   3.06361  2.57923  3.11272  0.18276     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     25   3.06361  2.57923  3.11272  0.18276     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     26   0.14522  3.35543  2.78576  3.25475     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     27   3.40447  0.13368  3.45513  2.80810     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     28   3.40447  0.13368  3.45513  2.80810     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     29   3.40447  0.13368  3.45513  2.80810     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     30   2.93012  3.56249  0.11996  3.46456     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     31   3.40447  0.13368  3.45513  2.80810     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     32   3.06361  2.57923  3.11272  0.18276     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     33   2.93012  3.56249  0.11996  3.46456     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     34   0.14522  3.35543  2.78576  3.25475     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     35   0.14522  3.35543  2.78576  3.25475     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     36   3.06361  2.57923  3.11272  0.18276     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     37   3.06361  2.57923  3.11272  0.18276     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     38   3.06361  2.57923  3.11272  0.18276     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     39   0.14522  3.35543  2.78576  3.25475     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     40   0.14522  3.35543  2.78576  3.25475     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     41   2.93012  3.56249  0.11996  3.46456     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     42   3.40447  0.13368  3.45513  2.80810     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     43   0.14522  3.35543  2.78576  3.25475     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     44   3.06361  2.57923  3.11272  0.18276     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     45   0.14522  3.35543  2.78576  3.25475     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97895        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fivem_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:53:17 2012
+NSEQ  4
+EFFN  3.222656
+CKSUM 1184312453
+STATS LOCAL MSV       -8.1699  0.71932
+STATS LOCAL VITERBI   -7.7304  0.71932
+STATS LOCAL FORWARD   -4.0256  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22397  1.20490  1.61149  1.57685
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  0.00000        *
+      1   3.39555  0.13478  3.44658  2.80157      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      2   3.05586  2.57429  3.10526  0.18405      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      3   3.39555  0.13478  3.44658  2.80157      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      4   3.39555  0.13478  3.44658  2.80157      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      5   2.92468  3.55461  0.12085  3.45586      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      6   0.14627  3.34770  2.78072  3.24630      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      7   3.39555  0.13478  3.44658  2.80157      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      8   3.39555  0.13478  3.44658  2.80157      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      9   3.05586  2.57429  3.10526  0.18405      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     10   3.39555  0.13478  3.44658  2.80157     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     11   0.14627  3.34770  2.78072  3.24630     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     12   2.92468  3.55461  0.12085  3.45586     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     13   0.14627  3.34770  2.78072  3.24630     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     14   3.05586  2.57429  3.10526  0.18405     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     15   3.39555  0.13478  3.44658  2.80157     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     16   0.14627  3.34770  2.78072  3.24630     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     17   2.92468  3.55461  0.12085  3.45586     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     18   0.14627  3.34770  2.78072  3.24630     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     19   3.39555  0.13478  3.44658  2.80157     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     20   2.92468  3.55461  0.12085  3.45586     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     21   0.14627  3.34770  2.78072  3.24630     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     22   2.92468  3.55461  0.12085  3.45586     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     23   0.14627  3.34770  2.78072  3.24630     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     24   3.39555  0.13478  3.44658  2.80157     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     25   3.05586  2.57429  3.10526  0.18405     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     26   0.14627  3.34770  2.78072  3.24630     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     27   3.39555  0.13478  3.44658  2.80157     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     28   3.39555  0.13478  3.44658  2.80157     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     29   3.39555  0.13478  3.44658  2.80157     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     30   2.92468  3.55461  0.12085  3.45586     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     31   3.39555  0.13478  3.44658  2.80157     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     32   3.05586  2.57429  3.10526  0.18405     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     33   2.92468  3.55461  0.12085  3.45586     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     34   0.14627  3.34770  2.78072  3.24630     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     35   0.14627  3.34770  2.78072  3.24630     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     36   3.05586  2.57429  3.10526  0.18405     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     37   3.05586  2.57429  3.10526  0.18405     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     38   3.05586  2.57429  3.10526  0.18405     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     39   0.14627  3.34770  2.78072  3.24630     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     40   0.14627  3.34770  2.78072  3.24630     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     41   2.92468  3.55461  0.12085  3.45586     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     42   3.39555  0.13478  3.44658  2.80157     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     43   0.14627  3.34770  2.78072  3.24630     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     44   3.05586  2.57429  3.10526  0.18405     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     45   0.14627  3.34770  2.78072  3.24630     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01897  3.97456        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:53:23 2012
+NSEQ  4
+EFFN  3.332031
+CKSUM 2141380269
+STATS LOCAL MSV       -8.2750  0.71931
+STATS LOCAL VITERBI   -7.7801  0.71931
+STATS LOCAL FORWARD   -4.2110  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.24934  1.32564  1.42131  1.57854
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  0.00000        *
+      1   0.14150  3.38325  2.80387  3.28520      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      2   3.09163  2.59706  3.13967  0.17819      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      3   3.43655  0.12980  3.48587  2.83150      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      4   3.43655  0.12980  3.48587  2.83150      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      5   2.94961  3.59079  0.11683  3.49577      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      6   0.14150  3.38325  2.80387  3.28520      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      7   3.43655  0.12980  3.48587  2.83150      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      8   3.43655  0.12980  3.48587  2.83150      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      9   3.09163  2.59706  3.13967  0.17819      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     10   3.43655  0.12980  3.48587  2.83150     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     11   2.94961  3.59079  0.11683  3.49577     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     12   2.94961  3.59079  0.11683  3.49577     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     13   0.14150  3.38325  2.80387  3.28520     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     14   3.09163  2.59706  3.13967  0.17819     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     15   3.43655  0.12980  3.48587  2.83150     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     16   0.14150  3.38325  2.80387  3.28520     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     17   2.94961  3.59079  0.11683  3.49577     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     18   0.14150  3.38325  2.80387  3.28520     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     19   3.43655  0.12980  3.48587  2.83150     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     20   2.94961  3.59079  0.11683  3.49577     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     21   2.94961  3.59079  0.11683  3.49577     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     22   2.94961  3.59079  0.11683  3.49577     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     23   0.86115  2.51680  0.90816  2.37150     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     24   0.14150  3.38325  2.80387  3.28520     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     25   3.09163  2.59706  3.13967  0.17819     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     26   0.14150  3.38325  2.80387  3.28520     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     27   3.43655  0.12980  3.48587  2.83150     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     28   3.43655  0.12980  3.48587  2.83150     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     29   3.43655  0.12980  3.48587  2.83150     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     30   2.94961  3.59079  0.11683  3.49577     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     31   3.43655  0.12980  3.48587  2.83150     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     32   3.09163  2.59706  3.13967  0.17819     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     33   2.94961  3.59079  0.11683  3.49577     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     34   0.14150  3.38325  2.80387  3.28520     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     35   0.14150  3.38325  2.80387  3.28520     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     36   3.09163  2.59706  3.13967  0.17819     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     37   3.09163  2.59706  3.13967  0.17819     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     38   3.09163  2.59706  3.13967  0.17819     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     39   0.14150  3.38325  2.80387  3.28520     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     40   0.14150  3.38325  2.80387  3.28520     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     41   2.94961  3.59079  0.11683  3.49577     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     42   3.43655  0.12980  3.48587  2.83150     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     43   0.14150  3.38325  2.80387  3.28520     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     44   3.09163  2.59706  3.13967  0.17819     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     45   0.14150  3.38325  2.80387  3.28520     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01858  3.99490        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiveo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:15:18 2012
+NSEQ  8
+EFFN  3.582031
+CKSUM 195965753
+STATS LOCAL MSV       -7.5858  0.71932
+STATS LOCAL VITERBI   -7.6704  0.71932
+STATS LOCAL FORWARD   -4.2797  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26432  1.21145  1.50325  1.62255
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  0.00000        *
+      1   0.69498  1.31322  2.20579  2.10538      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+      2   3.16964  2.64659  3.21467  0.16615      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+      3   3.52452  0.11982  3.57001  2.89508      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+      4   3.52452  0.11982  3.57001  2.89508      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+      5   3.00224  3.66784  0.10876  3.58097      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+      6   0.13183  3.45981  2.85336  3.36912      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+      7   3.52452  0.11982  3.57001  2.89508      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+      8   3.52452  0.11982  3.57001  2.89508      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+      9   3.16964  2.64659  3.21467  0.16615      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     10   3.52452  0.11982  3.57001  2.89508     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     11   3.00224  3.66784  0.10876  3.58097     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     12   3.00224  3.66784  0.10876  3.58097     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     13   0.13183  3.45981  2.85336  3.36912     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     14   3.16964  2.64659  3.21467  0.16615     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     15   3.52452  0.11982  3.57001  2.89508     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     16   0.13183  3.45981  2.85336  3.36912     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     17   3.00224  3.66784  0.10876  3.58097     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     18   0.13183  3.45981  2.85336  3.36912     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     19   3.52452  0.11982  3.57001  2.89508     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     20   3.00224  3.66784  0.10876  3.58097     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     21   0.57857  2.62890  1.25834  2.48868     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     22   3.00224  3.66784  0.10876  3.58097     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     23   0.13183  3.45981  2.85336  3.36912     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     24   3.52452  0.11982  3.57001  2.89508     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     25   3.16964  2.64659  3.21467  0.16615     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     26   0.13183  3.45981  2.85336  3.36912     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     27   3.52452  0.11982  3.57001  2.89508     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     28   3.52452  0.11982  3.57001  2.89508     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     29   3.52452  0.11982  3.57001  2.89508     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     30   3.00224  3.66784  0.10876  3.58097     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     31   3.52452  0.11982  3.57001  2.89508     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     32   3.16964  2.64659  3.21467  0.16615     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     33   3.00224  3.66784  0.10876  3.58097     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     34   0.13183  3.45981  2.85336  3.36912     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     35   0.13183  3.45981  2.85336  3.36912     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     36   2.49878  0.67370  2.57055  1.10411     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     37   3.16964  2.64659  3.21467  0.16615     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     38   3.16964  2.64659  3.21467  0.16615     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     39   0.13183  3.45981  2.85336  3.36912     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     40   0.13183  3.45981  2.85336  3.36912     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     41   3.00224  3.66784  0.10876  3.58097     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     42   3.52452  0.11982  3.57001  2.89508     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     43   0.13183  3.45981  2.85336  3.36912     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     44   3.16964  2.64659  3.21467  0.16615     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
+     45   0.13183  3.45981  2.85336  3.36912     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01776  4.03989        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fivep_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:53:36 2012
+NSEQ  17
+EFFN  3.365967
+CKSUM 4287925610
+STATS LOCAL MSV       -8.2565  0.71932
+STATS LOCAL VITERBI   -7.6487  0.71932
+STATS LOCAL FORWARD   -4.1993  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26446  1.28628  1.52443  1.49806
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  0.00000        *
+      1   1.43388  0.63032  2.28387  2.06115      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+      2   3.10252  2.60398  3.15014  0.17645      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+      3   3.44896  0.12833  3.49774  2.84052      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+      4   3.44896  0.12833  3.49774  2.84052      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+      5   2.95710  3.60170  0.11565  3.50782      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+      6   0.14009  3.39402  2.81085  3.29699      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+      7   3.44896  0.12833  3.49774  2.84052      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+      8   3.44896  0.12833  3.49774  2.84052      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+      9   3.10252  2.60398  3.15014  0.17645      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     10   3.44896  0.12833  3.49774  2.84052     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     11   0.14009  3.39402  2.81085  3.29699     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     12   2.95710  3.60170  0.11565  3.50782     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     13   0.14009  3.39402  2.81085  3.29699     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     14   3.10252  2.60398  3.15014  0.17645     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     15   3.44896  0.12833  3.49774  2.84052     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     16   2.95710  3.60170  0.11565  3.50782     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     17   2.95710  3.60170  0.11565  3.50782     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     18   0.14009  3.39402  2.81085  3.29699     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     19   3.44896  0.12833  3.49774  2.84052     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     20   2.95710  3.60170  0.11565  3.50782     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     21   0.14009  3.39402  2.81085  3.29699     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     22   2.95710  3.60170  0.11565  3.50782     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     23   0.14009  3.39402  2.81085  3.29699     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     24   3.10252  2.60398  3.15014  0.17645     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     25   3.10252  2.60398  3.15014  0.17645     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     26   0.14009  3.39402  2.81085  3.29699     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     27   3.44896  0.12833  3.49774  2.84052     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     28   3.44896  0.12833  3.49774  2.84052     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     29   3.44896  0.12833  3.49774  2.84052     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     30   2.95710  3.60170  0.11565  3.50782     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     31   3.44896  0.12833  3.49774  2.84052     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     32   3.10252  2.60398  3.15014  0.17645     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     33   2.95710  3.60170  0.11565  3.50782     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     34   0.14009  3.39402  2.81085  3.29699     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     35   0.14009  3.39402  2.81085  3.29699     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     36   3.10252  2.60398  3.15014  0.17645     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     37   3.10252  2.60398  3.15014  0.17645     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     38   3.10252  2.60398  3.15014  0.17645     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     39   0.14009  3.39402  2.81085  3.29699     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     40   0.14009  3.39402  2.81085  3.29699     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     41   2.95710  3.60170  0.11565  3.50782     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     42   3.44896  0.12833  3.49774  2.84052     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     43   0.14009  3.39402  2.81085  3.29699     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     44   3.10252  2.60398  3.15014  0.17645     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
+     45   0.14009  3.39402  2.81085  3.29699     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01846  4.00113        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiveq_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:53:43 2012
+NSEQ  4
+EFFN  3.808594
+CKSUM 1514537771
+STATS LOCAL MSV       -7.0892  0.71932
+STATS LOCAL VITERBI   -7.6193  0.71932
+STATS LOCAL FORWARD   -3.9103  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.37675  1.44057  1.24790  1.49744
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  0.00000        *
+      1   3.23608  2.68870  3.27851  0.15662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+      2   2.12257  0.97963  0.98185  2.03861      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+      3   3.23608  2.68870  3.27851  0.15662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+      4   3.04531  3.73144  0.10258  3.65148      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+      5   3.04531  3.73144  0.10258  3.65148      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+      6   3.04531  3.73144  0.10258  3.65148      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+      7   3.59776  0.11218  3.63995  2.94742      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+      8   3.59776  0.11218  3.63995  2.94742      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+      9   3.23608  2.68870  3.27851  0.15662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     10   3.59776  0.11218  3.63995  2.94742     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     11   0.12430  3.52395  2.89458  3.43954     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     12   3.04531  3.73144  0.10258  3.65148     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     13   3.04531  3.73144  0.10258  3.65148     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     14   3.23608  2.68870  3.27851  0.15662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     15   3.59776  0.11218  3.63995  2.94742     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     16   0.12430  3.52395  2.89458  3.43954     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     17   3.04531  3.73144  0.10258  3.65148     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     18   0.37490  2.86983  1.65322  2.74111     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     19   2.70582  1.56363  2.76927  0.41385     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     20   3.04531  3.73144  0.10258  3.65148     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     21   0.12430  3.52395  2.89458  3.43954     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     22   3.04531  3.73144  0.10258  3.65148     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     23   0.81347  2.59501  0.92651  2.45219     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     24   3.59776  0.11218  3.63995  2.94742     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     25   3.04531  3.73144  0.10258  3.65148     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     26   0.12430  3.52395  2.89458  3.43954     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     27   3.59776  0.11218  3.63995  2.94742     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     28   3.59776  0.11218  3.63995  2.94742     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     29   3.59776  0.11218  3.63995  2.94742     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     30   3.04531  3.73144  0.10258  3.65148     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     31   2.75233  0.41169  2.82025  1.54131     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     32   3.23608  2.68870  3.27851  0.15662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     33   3.04531  3.73144  0.10258  3.65148     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     34   0.12430  3.52395  2.89458  3.43954     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     35   0.12430  3.52395  2.89458  3.43954     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     36   3.23608  2.68870  3.27851  0.15662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     37   3.23608  2.68870  3.27851  0.15662     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     38   3.23608  2.68870  3.27851  0.15662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     39   0.12430  3.52395  2.89458  3.43954     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     40   0.12430  3.52395  2.89458  3.43954     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     41   3.04531  3.73144  0.10258  3.65148     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     42   3.59776  0.11218  3.63995  2.94742     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     43   0.12430  3.52395  2.89458  3.43954     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     44   3.23608  2.68870  3.27851  0.15662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
+     45   0.12430  3.52395  2.89458  3.43954     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01707  4.07899        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiver_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:53:51 2012
+NSEQ  30
+EFFN  3.277588
+CKSUM 2425933469
+STATS LOCAL MSV       -8.2755  0.71933
+STATS LOCAL VITERBI   -7.7804  0.71933
+STATS LOCAL FORWARD   -4.0974  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.20618  1.26770  1.40145  1.75480
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  0.00000        *
+      1   1.36735  2.65257  0.52169  2.51047      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+      2   3.41634  0.13223  3.46651  2.81677      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+      3   2.93735  3.57297  0.11879  3.47612      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+      4   3.41634  0.13223  3.46651  2.81677      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+      5   2.93735  3.57297  0.11879  3.47612      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+      6   0.14383  3.36572  2.79247  3.26601      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+      7   3.41634  0.13223  3.46651  2.81677      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+      8   3.41634  0.13223  3.46651  2.81677      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+      9   3.07395  2.58581  3.12266  0.18106      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     10   3.41634  0.13223  3.46651  2.81677     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     11   0.14383  3.36572  2.79247  3.26601     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     12   2.93735  3.57297  0.11879  3.47612     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     13   0.14383  3.36572  2.79247  3.26601     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     14   3.07395  2.58581  3.12266  0.18106     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     15   3.41634  0.13223  3.46651  2.81677     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     16   0.14383  3.36572  2.79247  3.26601     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     17   2.93735  3.57297  0.11879  3.47612     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     18   0.14383  3.36572  2.79247  3.26601     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     19   3.41634  0.13223  3.46651  2.81677     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     20   2.93735  3.57297  0.11879  3.47612     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     21   0.14383  3.36572  2.79247  3.26601     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     22   2.93735  3.57297  0.11879  3.47612     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     23   0.14383  3.36572  2.79247  3.26601     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     24   3.41634  0.13223  3.46651  2.81677     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     25   2.93735  3.57297  0.11879  3.47612     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     26   0.14383  3.36572  2.79247  3.26601     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     27   3.41634  0.13223  3.46651  2.81677     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     28   3.41634  0.13223  3.46651  2.81677     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     29   3.41634  0.13223  3.46651  2.81677     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     30   2.93735  3.57297  0.11879  3.47612     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     31   3.41634  0.13223  3.46651  2.81677     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     32   3.07395  2.58581  3.12266  0.18106     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     33   2.93735  3.57297  0.11879  3.47612     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     34   0.14383  3.36572  2.79247  3.26601     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     35   0.14383  3.36572  2.79247  3.26601     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     36   2.96771  2.33468  3.02010  0.21947     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     37   3.07395  2.58581  3.12266  0.18106     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     38   3.07395  2.58581  3.12266  0.18106     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     39   0.14383  3.36572  2.79247  3.26601     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     40   0.14383  3.36572  2.79247  3.26601     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     41   2.93735  3.57297  0.11879  3.47612     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     42   3.41634  0.13223  3.46651  2.81677     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     43   0.14383  3.36572  2.79247  3.26601     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     44   3.07395  2.58581  3.12266  0.18106     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
+     45   0.14383  3.36572  2.79247  3.26601     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01877  3.98483        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fives_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:53:57 2012
+NSEQ  4
+EFFN  3.285156
+CKSUM 1153157283
+STATS LOCAL MSV       -8.1433  0.71932
+STATS LOCAL VITERBI   -7.6563  0.71932
+STATS LOCAL FORWARD   -3.9177  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21903  1.45908  1.52472  1.36903
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  0.00000        *
+      1   3.07642  2.58739  3.12504  0.18065      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      2   3.07642  2.58739  3.12504  0.18065      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      3   3.07642  2.58739  3.12504  0.18065      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      4   3.41917  0.13188  3.46922  2.81884      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      5   2.93908  3.57547  0.11851  3.47887      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      6   0.14350  3.36817  2.79406  3.26870      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      7   3.41917  0.13188  3.46922  2.81884      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      8   3.41917  0.13188  3.46922  2.81884      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      9   3.07642  2.58739  3.12504  0.18065      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     10   2.93908  3.57547  0.11851  3.47887     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     11   0.14350  3.36817  2.79406  3.26870     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     12   2.93908  3.57547  0.11851  3.47887     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     13   0.14350  3.36817  2.79406  3.26870     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     14   3.07642  2.58739  3.12504  0.18065     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     15   3.07642  2.58739  3.12504  0.18065     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     16   0.14350  3.36817  2.79406  3.26870     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     17   2.93908  3.57547  0.11851  3.47887     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     18   2.93908  3.57547  0.11851  3.47887     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     19   3.41917  0.13188  3.46922  2.81884     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     20   0.14350  3.36817  2.79406  3.26870     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     21   0.14350  3.36817  2.79406  3.26870     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     22   2.93908  3.57547  0.11851  3.47887     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     23   0.14350  3.36817  2.79406  3.26870     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     24   3.07642  2.58739  3.12504  0.18065     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     25   3.07642  2.58739  3.12504  0.18065     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     26   0.14350  3.36817  2.79406  3.26870     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     27   3.41917  0.13188  3.46922  2.81884     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     28   3.41917  0.13188  3.46922  2.81884     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     29   3.41917  0.13188  3.46922  2.81884     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     30   2.93908  3.57547  0.11851  3.47887     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     31   3.41917  0.13188  3.46922  2.81884     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     32   3.41917  0.13188  3.46922  2.81884     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     33   2.93908  3.57547  0.11851  3.47887     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     34   0.14350  3.36817  2.79406  3.26870     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     35   0.14350  3.36817  2.79406  3.26870     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     36   3.07642  2.58739  3.12504  0.18065     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     37   3.07642  2.58739  3.12504  0.18065     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     38   3.07642  2.58739  3.12504  0.18065     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     39   0.14350  3.36817  2.79406  3.26870     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     40   0.14350  3.36817  2.79406  3.26870     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     41   2.93908  3.57547  0.11851  3.47887     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     42   3.41917  0.13188  3.46922  2.81884     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     43   0.14350  3.36817  2.79406  3.26870     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     44   3.07642  2.58739  3.12504  0.18065     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     45   0.14350  3.36817  2.79406  3.26870     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01874  3.98623        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fivet_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:54:02 2012
+NSEQ  9
+EFFN  3.405762
+CKSUM 1998620783
+STATS LOCAL MSV       -7.7501  0.71933
+STATS LOCAL VITERBI   -7.5664  0.71933
+STATS LOCAL FORWARD   -4.1179  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26772  1.30941  1.54598  1.44628
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  0.00000        *
+      1   3.46331  0.12666  3.51148  2.85093      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+      2   3.11517  2.61202  3.16230  0.17445      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+      3   2.64758  1.62824  2.71176  0.40574      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+      4   2.96574  3.61431  0.11430  3.52175      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+      5   0.13848  3.40650  2.81894  3.31066      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+      6   3.46331  0.12666  3.51148  2.85093      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+      7   3.46331  0.12666  3.51148  2.85093      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+      8   3.11517  2.61202  3.16230  0.17445      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+      9   3.46331  0.12666  3.51148  2.85093      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     10   0.13848  3.40650  2.81894  3.31066     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     11   2.96574  3.61431  0.11430  3.52175     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     12   0.13848  3.40650  2.81894  3.31066     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     13   3.11517  2.61202  3.16230  0.17445     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     14   3.46331  0.12666  3.51148  2.85093     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     15   0.13848  3.40650  2.81894  3.31066     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     16   2.96574  3.61431  0.11430  3.52175     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     17   2.96574  3.61431  0.11430  3.52175     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     18   3.46331  0.12666  3.51148  2.85093     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     19   0.13848  3.40650  2.81894  3.31066     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     20   0.13848  3.40650  2.81894  3.31066     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     21   2.96574  3.61431  0.11430  3.52175     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     22   1.74479  2.89395  0.34711  2.76092     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     23   3.46331  0.12666  3.51148  2.85093     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     24   3.11517  2.61202  3.16230  0.17445     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     25   0.13848  3.40650  2.81894  3.31066     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     26   3.46331  0.12666  3.51148  2.85093     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     27   3.46331  0.12666  3.51148  2.85093     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     28   3.46331  0.12666  3.51148  2.85093     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     29   2.96574  3.61431  0.11430  3.52175     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     30   3.46331  0.12666  3.51148  2.85093     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     31   3.11517  2.61202  3.16230  0.17445     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     32   2.96574  3.61431  0.11430  3.52175     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     33   0.13848  3.40650  2.81894  3.31066     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     34   0.13848  3.40650  2.81894  3.31066     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     35   3.11517  2.61202  3.16230  0.17445     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     36   3.11517  2.61202  3.16230  0.17445     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     37   3.11517  2.61202  3.16230  0.17445     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     38   0.13848  3.40650  2.81894  3.31066     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     39   0.13848  3.40650  2.81894  3.31066     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     40   2.96574  3.61431  0.11430  3.52175     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     41   3.46331  0.12666  3.51148  2.85093     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     42   0.13848  3.40650  2.81894  3.31066     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     43   3.11517  2.61202  3.16230  0.17445     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     44   0.13848  3.40650  2.81894  3.31066     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
+     45   3.11517  2.61202  3.16230  0.17445     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01833  4.00838        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fiveu_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:54:08 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1112863540
+STATS LOCAL MSV       -7.9703  0.72001
+STATS LOCAL VITERBI   -7.7320  0.72001
+STATS LOCAL FORWARD   -3.8267  0.72001
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16711  1.27728  1.44572  1.74661
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
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+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     13   0.15719  3.27118  2.73043  3.16274     13 - -
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+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
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+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
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+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
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+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fivev_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:54:14 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2351947980
+STATS LOCAL MSV       -8.2579  0.72001
+STATS LOCAL VITERBI   -7.8277  0.72001
+STATS LOCAL FORWARD   -4.0042  0.72001
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16841  1.27582  1.44578  1.74654
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_forty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:37:27 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 177781798
+STATS LOCAL MSV       -7.9280  0.72034
+STATS LOCAL VITERBI   -7.6927  0.72034
+STATS LOCAL FORWARD   -3.8615  0.72034
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16587  1.24219  1.44401  1.81022
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.86982  3.47591  0.13017  3.36931     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.43223  0.62271  2.50508  1.22417     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fortyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:39:23 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3833065457
+STATS LOCAL MSV       -7.5228  0.72841
+STATS LOCAL VITERBI   -8.1928  0.72841
+STATS LOCAL FORWARD   -3.5857  0.72841
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26812  1.40241  1.36693  1.52443
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   1.03732  1.95876  1.96551  1.00928      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.81865  0.23582  2.88868  2.35662     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fortyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:38:52 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1191930638
+STATS LOCAL MSV       -8.2239  0.72118
+STATS LOCAL VITERBI   -7.7053  0.72118
+STATS LOCAL FORWARD   -4.0150  0.72118
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.13466  1.28437  1.57340  1.63832
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.11048  0.71234  1.38751  1.97595      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.66361  1.42357  2.15007  2.05820     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fortyfoura_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:38:28 2012
+NSEQ  5
+EFFN  3.413086
+CKSUM 1013805944
+STATS LOCAL MSV       -7.6463  0.71933
+STATS LOCAL VITERBI   -7.8316  0.71933
+STATS LOCAL FORWARD   -4.0407  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28408  1.29592  1.36697  1.63695
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  0.00000        *
+      1   0.34579  2.85483  1.77608  2.72608      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      2   2.73556  0.38295  2.80366  1.64658      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      3   2.96731  3.61661  0.11405  3.52429      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      4   3.46593  0.12636  3.51399  2.85283      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      5   2.96731  3.61661  0.11405  3.52429      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      6   0.13819  3.40877  2.82041  3.31315      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      7   3.46593  0.12636  3.51399  2.85283      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      8   3.46593  0.12636  3.51399  2.85283      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      9   3.11748  2.61349  3.16453  0.17409      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     10   3.46593  0.12636  3.51399  2.85283     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     11   0.13819  3.40877  2.82041  3.31315     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     12   2.96731  3.61661  0.11405  3.52429     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     13   0.13819  3.40877  2.82041  3.31315     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     14   3.11748  2.61349  3.16453  0.17409     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     15   3.46593  0.12636  3.51399  2.85283     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     16   0.13819  3.40877  2.82041  3.31315     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     17   2.96731  3.61661  0.11405  3.52429     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     18   0.13819  3.40877  2.82041  3.31315     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     19   3.46593  0.12636  3.51399  2.85283     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     20   2.96731  3.61661  0.11405  3.52429     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     21   3.11748  2.61349  3.16453  0.17409     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     22   2.96731  3.61661  0.11405  3.52429     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     23   2.96731  3.61661  0.11405  3.52429     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     24   2.73556  0.38295  2.80366  1.64658     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     25   2.96731  3.61661  0.11405  3.52429     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     26   0.13819  3.40877  2.82041  3.31315     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     27   3.46593  0.12636  3.51399  2.85283     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     28   3.46593  0.12636  3.51399  2.85283     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     29   3.46593  0.12636  3.51399  2.85283     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     30   2.96731  3.61661  0.11405  3.52429     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     31   3.46593  0.12636  3.51399  2.85283     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     32   3.11748  2.61349  3.16453  0.17409     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     33   2.96731  3.61661  0.11405  3.52429     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     34   0.13819  3.40877  2.82041  3.31315     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     35   0.13819  3.40877  2.82041  3.31315     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     36   3.11748  2.61349  3.16453  0.17409     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     37   3.11748  2.61349  3.16453  0.17409     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     38   3.11748  2.61349  3.16453  0.17409     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     39   0.13819  3.40877  2.82041  3.31315     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     40   0.13819  3.40877  2.82041  3.31315     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     41   2.96731  3.61661  0.11405  3.52429     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     42   3.46593  0.12636  3.51399  2.85283     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     43   0.13819  3.40877  2.82041  3.31315     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     44   3.11748  2.61349  3.16453  0.17409     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     45   0.13819  3.40877  2.82041  3.31315     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01831  4.00971        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fortyfourb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:38:39 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1268375051
+STATS LOCAL MSV       -7.6474  0.72924
+STATS LOCAL VITERBI   -8.4367  0.72924
+STATS LOCAL FORWARD   -3.2953  0.72924
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.30102  1.30681  1.42415  1.53087
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   1.01448  1.11006  1.95471  1.79419      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   1.01448  1.11006  1.95471  1.79419      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fortynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:39:33 2012
+NSEQ  4
+EFFN  3.339844
+CKSUM 2409178545
+STATS LOCAL MSV       -8.1050  0.71932
+STATS LOCAL VITERBI   -7.6212  0.71932
+STATS LOCAL FORWARD   -4.1599  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.25227  1.39140  1.37276  1.55112
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  0.00000        *
+      1   0.97435  2.14484  2.16029  0.94114      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      2   3.09414  2.59866  3.14209  0.17779      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      3   2.95135  3.59331  0.11655  3.49856      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      4   3.43942  0.12946  3.48861  2.83359      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      5   2.95135  3.59331  0.11655  3.49856      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      6   0.14117  3.38574  2.80548  3.28793      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      7   3.43942  0.12946  3.48861  2.83359      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      8   3.43942  0.12946  3.48861  2.83359      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      9   3.09414  2.59866  3.14209  0.17779      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     10   3.43942  0.12946  3.48861  2.83359     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     11   0.14117  3.38574  2.80548  3.28793     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     12   2.95135  3.59331  0.11655  3.49856     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     13   0.14117  3.38574  2.80548  3.28793     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     14   2.95135  3.59331  0.11655  3.49856     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     15   3.43942  0.12946  3.48861  2.83359     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     16   0.14117  3.38574  2.80548  3.28793     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     17   2.95135  3.59331  0.11655  3.49856     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     18   2.95135  3.59331  0.11655  3.49856     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     19   3.09414  2.59866  3.14209  0.17779     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     20   2.95135  3.59331  0.11655  3.49856     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     21   0.14117  3.38574  2.80548  3.28793     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     22   2.95135  3.59331  0.11655  3.49856     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     23   0.14117  3.38574  2.80548  3.28793     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     24   3.43942  0.12946  3.48861  2.83359     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     25   3.09414  2.59866  3.14209  0.17779     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     26   0.14117  3.38574  2.80548  3.28793     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     27   3.43942  0.12946  3.48861  2.83359     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     28   3.43942  0.12946  3.48861  2.83359     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     29   3.43942  0.12946  3.48861  2.83359     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     30   2.95135  3.59331  0.11655  3.49856     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     31   3.43942  0.12946  3.48861  2.83359     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     32   3.09414  2.59866  3.14209  0.17779     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     33   2.95135  3.59331  0.11655  3.49856     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     34   0.14117  3.38574  2.80548  3.28793     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     35   0.14117  3.38574  2.80548  3.28793     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     36   3.09414  2.59866  3.14209  0.17779     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     37   3.09414  2.59866  3.14209  0.17779     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     38   3.09414  2.59866  3.14209  0.17779     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     39   0.14117  3.38574  2.80548  3.28793     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     40   0.14117  3.38574  2.80548  3.28793     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     41   2.95135  3.59331  0.11655  3.49856     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     42   3.43942  0.12946  3.48861  2.83359     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     43   0.14117  3.38574  2.80548  3.28793     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     44   3.09414  2.59866  3.14209  0.17779     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     45   0.14117  3.38574  2.80548  3.28793     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01855  3.99634        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fortyonea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:37:39 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3366742742
+STATS LOCAL MSV       -8.0336  0.72055
+STATS LOCAL VITERBI   -7.7232  0.72055
+STATS LOCAL FORWARD   -4.1900  0.72055
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.30370  1.20720  1.50925  1.56846
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   0.15719  3.27118  2.73043  3.16274      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   0.15719  3.27118  2.73043  3.16274     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.54133  2.56226  1.37841  2.42004     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fortyoneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:37:44 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 929202663
+STATS LOCAL MSV       -8.0030  0.72088
+STATS LOCAL VITERBI   -7.9152  0.72088
+STATS LOCAL FORWARD   -4.0145  0.72088
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27679  1.32055  1.55992  1.41088
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.10082  2.21882  0.69930  1.30206     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   3.30705  0.14631  3.36166  2.73626     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fortyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:39:13 2012
+NSEQ  4
+EFFN  3.386719
+CKSUM 506096181
+STATS LOCAL MSV       -7.4774  0.71932
+STATS LOCAL VITERBI   -7.6569  0.71932
+STATS LOCAL FORWARD   -4.1355  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27567  1.14533  1.52677  1.68524
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  0.00000        *
+      1   2.64800  0.44394  2.71770  1.50655      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      2   3.10913  2.60819  3.15650  0.17540      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      3   3.45647  0.12746  3.50493  2.84597      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      4   3.45647  0.12746  3.50493  2.84597      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      5   2.96162  3.60830  0.11494  3.51511      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      6   0.13925  3.40055  2.81508  3.30414      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      7   3.45647  0.12746  3.50493  2.84597      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      8   3.45647  0.12746  3.50493  2.84597      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+      9   3.10913  2.60819  3.15650  0.17540      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     10   3.45647  0.12746  3.50493  2.84597     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     11   2.96162  3.60830  0.11494  3.51511     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     12   2.96162  3.60830  0.11494  3.51511     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     13   0.13925  3.40055  2.81508  3.30414     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     14   3.10913  2.60819  3.15650  0.17540     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     15   3.45647  0.12746  3.50493  2.84597     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     16   0.13925  3.40055  2.81508  3.30414     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     17   2.96162  3.60830  0.11494  3.51511     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     18   0.13925  3.40055  2.81508  3.30414     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     19   3.45647  0.12746  3.50493  2.84597     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     20   2.96162  3.60830  0.11494  3.51511     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     21   0.13925  3.40055  2.81508  3.30414     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     22   2.96162  3.60830  0.11494  3.51511     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     23   0.13925  3.40055  2.81508  3.30414     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     24   3.45647  0.12746  3.50493  2.84597     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     25   3.10913  2.60819  3.15650  0.17540     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     26   0.13925  3.40055  2.81508  3.30414     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     27   3.45647  0.12746  3.50493  2.84597     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     28   3.45647  0.12746  3.50493  2.84597     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     29   3.45647  0.12746  3.50493  2.84597     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     30   2.96162  3.60830  0.11494  3.51511     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     31   3.45647  0.12746  3.50493  2.84597     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     32   2.41720  0.96408  2.48911  0.80629     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     33   2.96162  3.60830  0.11494  3.51511     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     34   0.13925  3.40055  2.81508  3.30414     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     35   0.13925  3.40055  2.81508  3.30414     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     36   3.45647  0.12746  3.50493  2.84597     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     37   3.10913  2.60819  3.15650  0.17540     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     38   3.10913  2.60819  3.15650  0.17540     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     39   0.13925  3.40055  2.81508  3.30414     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     40   0.13925  3.40055  2.81508  3.30414     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     41   2.96162  3.60830  0.11494  3.51511     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     42   3.45647  0.12746  3.50493  2.84597     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     43   0.13925  3.40055  2.81508  3.30414     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     44   3.10913  2.60819  3.15650  0.17540     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
+     45   0.13925  3.40055  2.81508  3.30414     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01839  4.00492        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fortysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:39:02 2012
+NSEQ  5
+EFFN  3.520508
+CKSUM 110130574
+STATS LOCAL MSV       -7.5423  0.71933
+STATS LOCAL VITERBI   -7.7453  0.71933
+STATS LOCAL FORWARD   -4.2471  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26520  1.20006  1.54145  1.59667
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  0.00000        *
+      1   2.47058  0.72118  2.54263  1.04803      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+      2   3.15091  2.63471  3.19667  0.16895      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+      3   3.50359  0.12211  3.55001  2.88003      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+      4   3.50359  0.12211  3.55001  2.88003      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+      5   2.98981  3.64957  0.11061  3.56075      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+      6   0.13406  3.44156  2.84159  3.34909      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+      7   3.50359  0.12211  3.55001  2.88003      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+      8   3.50359  0.12211  3.55001  2.88003      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+      9   3.15091  2.63471  3.19667  0.16895      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     10   3.50359  0.12211  3.55001  2.88003     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     11   1.86609  2.99735  0.30300  2.86904     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     12   2.98981  3.64957  0.11061  3.56075     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     13   0.13406  3.44156  2.84159  3.34909     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     14   3.15091  2.63471  3.19667  0.16895     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     15   3.50359  0.12211  3.55001  2.88003     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     16   0.13406  3.44156  2.84159  3.34909     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     17   2.98981  3.64957  0.11061  3.56075     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     18   0.13406  3.44156  2.84159  3.34909     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     19   3.50359  0.12211  3.55001  2.88003     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     20   2.98981  3.64957  0.11061  3.56075     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     21   0.13406  3.44156  2.84159  3.34909     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     22   2.98981  3.64957  0.11061  3.56075     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     23   0.13406  3.44156  2.84159  3.34909     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     24   3.50359  0.12211  3.55001  2.88003     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     25   3.15091  2.63471  3.19667  0.16895     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     26   0.13406  3.44156  2.84159  3.34909     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     27   3.50359  0.12211  3.55001  2.88003     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     28   3.50359  0.12211  3.55001  2.88003     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     29   3.50359  0.12211  3.55001  2.88003     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     30   2.98981  3.64957  0.11061  3.56075     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     31   3.50359  0.12211  3.55001  2.88003     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     32   3.15091  2.63471  3.19667  0.16895     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     33   2.98981  3.64957  0.11061  3.56075     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     34   0.13406  3.44156  2.84159  3.34909     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     35   0.13406  3.44156  2.84159  3.34909     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     36   2.46474  0.73956  2.53682  1.02575     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     37   3.15091  2.63471  3.19667  0.16895     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     38   3.15091  2.63471  3.19667  0.16895     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     39   0.13406  3.44156  2.84159  3.34909     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     40   0.13406  3.44156  2.84159  3.34909     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     41   2.98981  3.64957  0.11061  3.56075     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     42   3.50359  0.12211  3.55001  2.88003     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     43   0.13406  3.44156  2.84159  3.34909     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     44   3.15091  2.63471  3.19667  0.16895     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
+     45   0.13406  3.44156  2.84159  3.34909     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01795  4.02901        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fortythreea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:38:10 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3285087360
+STATS LOCAL MSV       -7.4672  0.72897
+STATS LOCAL VITERBI   -8.3344  0.72897
+STATS LOCAL FORWARD   -3.4614  0.72897
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26742  1.43435  1.48777  1.36926
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   1.01448  1.11006  1.95471  1.79419      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fortythreeb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:38:18 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1330444769
+STATS LOCAL MSV       -8.1653  0.72121
+STATS LOCAL VITERBI   -7.7606  0.72121
+STATS LOCAL FORWARD   -3.9063  0.72121
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.24373  1.24730  1.57852  1.52265
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.66361  1.42357  2.15007  2.05820     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.12334  2.11792  1.37287  0.67982     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fortytwoa_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:37:57 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2178489850
+STATS LOCAL MSV       -8.1532  0.72099
+STATS LOCAL VITERBI   -7.7294  0.72099
+STATS LOCAL FORWARD   -3.9694  0.72099
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.20847  1.23061  1.78114  1.42385
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   0.15719  3.27118  2.73043  3.16274      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.86982  3.47591  0.13017  3.36931      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   1.32295  0.73131  2.17864  1.97201     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_foura_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:49:53 2012
+NSEQ  15
+EFFN  3.504639
+CKSUM 2507778126
+STATS LOCAL MSV       -7.5617  0.71933
+STATS LOCAL VITERBI   -7.7985  0.71933
+STATS LOCAL FORWARD   -4.1327  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.24885  1.29821  1.59403  1.43953
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  0.00000        *
+      1   3.14603  2.63161  3.19198  0.16969      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+      2   3.14603  2.63161  3.19198  0.16969      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+      3   3.14603  2.63161  3.19198  0.16969      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+      4   3.49812  0.12271  3.54478  2.87609      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+      5   2.98656  3.64479  0.11111  3.55546      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+      6   0.13465  3.43679  2.83851  3.34386      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+      7   3.49812  0.12271  3.54478  2.87609      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+      8   3.49812  0.12271  3.54478  2.87609      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+      9   3.14603  2.63161  3.19198  0.16969      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     10   2.98656  3.64479  0.11111  3.55546     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     11   0.13465  3.43679  2.83851  3.34386     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     12   0.13465  3.43679  2.83851  3.34386     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     13   3.49812  0.12271  3.54478  2.87609     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     14   3.14603  2.63161  3.19198  0.16969     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     15   3.49812  0.12271  3.54478  2.87609     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     16   0.13465  3.43679  2.83851  3.34386     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     17   2.98656  3.64479  0.11111  3.55546     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     18   0.13465  3.43679  2.83851  3.34386     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     19   3.49812  0.12271  3.54478  2.87609     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     20   2.98656  3.64479  0.11111  3.55546     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     21   3.14603  2.63161  3.19198  0.16969     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     22   2.98656  3.64479  0.11111  3.55546     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     23   0.13465  3.43679  2.83851  3.34386     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     24   0.85624  1.61968  1.42525  1.98899     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     25   2.62143  1.53034  2.68674  0.44202     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     26   0.13465  3.43679  2.83851  3.34386     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     27   3.49812  0.12271  3.54478  2.87609     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     28   3.49812  0.12271  3.54478  2.87609     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     29   3.49812  0.12271  3.54478  2.87609     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     30   2.98656  3.64479  0.11111  3.55546     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     31   3.49812  0.12271  3.54478  2.87609     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     32   3.14603  2.63161  3.19198  0.16969     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     33   2.98656  3.64479  0.11111  3.55546     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     34   0.13465  3.43679  2.83851  3.34386     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     35   0.13465  3.43679  2.83851  3.34386     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     36   3.49812  0.12271  3.54478  2.87609     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     37   3.14603  2.63161  3.19198  0.16969     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     38   3.14603  2.63161  3.19198  0.16969     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     39   0.13465  3.43679  2.83851  3.34386     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     40   0.13465  3.43679  2.83851  3.34386     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     41   2.98656  3.64479  0.11111  3.55546     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     42   3.49812  0.12271  3.54478  2.87609     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     43   0.13465  3.43679  2.83851  3.34386     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     44   3.14603  2.63161  3.19198  0.16969     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
+     45   0.13465  3.43679  2.83851  3.34386     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01800  4.02618        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fourb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:50:04 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1737265017
+STATS LOCAL MSV       -7.9324  0.72043
+STATS LOCAL VITERBI   -7.8211  0.72043
+STATS LOCAL FORWARD   -3.8393  0.72043
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22596  1.26330  1.69225  1.42836
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fourc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:50:12 2012
+NSEQ  12
+EFFN  3.524414
+CKSUM 2964998357
+STATS LOCAL MSV       -7.5619  0.71932
+STATS LOCAL VITERBI   -7.8274  0.71932
+STATS LOCAL FORWARD   -4.3051  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27870  1.36878  1.61837  1.31318
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  0.00000        *
+      1   3.15211  2.63547  3.19782  0.16877      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+      2   3.15211  2.63547  3.19782  0.16877      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+      3   3.15211  2.63547  3.19782  0.16877      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+      4   2.62700  1.53267  2.69220  0.44003      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+      5   2.99061  3.65075  0.11049  3.56205      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+      6   0.13392  3.44273  2.84235  3.35037      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+      7   3.50494  0.12196  3.55129  2.88100      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+      8   3.50494  0.12196  3.55129  2.88100      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+      9   3.15211  2.63547  3.19782  0.16877      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     10   2.99061  3.65075  0.11049  3.56205     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     11   0.13392  3.44273  2.84235  3.35037     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     12   0.13392  3.44273  2.84235  3.35037     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     13   3.50494  0.12196  3.55129  2.88100     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     14   3.15211  2.63547  3.19782  0.16877     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     15   3.50494  0.12196  3.55129  2.88100     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     16   0.13392  3.44273  2.84235  3.35037     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     17   1.96046  3.06086  0.27540  2.93570     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     18   0.29933  2.95963  1.90905  2.83659     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     19   3.50494  0.12196  3.55129  2.88100     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     20   2.99061  3.65075  0.11049  3.56205     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     21   3.15211  2.63547  3.19782  0.16877     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     22   2.99061  3.65075  0.11049  3.56205     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     23   0.13392  3.44273  2.84235  3.35037     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     24   3.15211  2.63547  3.19782  0.16877     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     25   3.15211  2.63547  3.19782  0.16877     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     26   0.13392  3.44273  2.84235  3.35037     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     27   3.50494  0.12196  3.55129  2.88100     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     28   3.50494  0.12196  3.55129  2.88100     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     29   3.50494  0.12196  3.55129  2.88100     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     30   2.99061  3.65075  0.11049  3.56205     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     31   3.50494  0.12196  3.55129  2.88100     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     32   3.15211  2.63547  3.19782  0.16877     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     33   2.99061  3.65075  0.11049  3.56205     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     34   0.13392  3.44273  2.84235  3.35037     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     35   0.13392  3.44273  2.84235  3.35037     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     36   3.50494  0.12196  3.55129  2.88100     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     37   3.15211  2.63547  3.19782  0.16877     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     38   3.15211  2.63547  3.19782  0.16877     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     39   0.13392  3.44273  2.84235  3.35037     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     40   0.13392  3.44273  2.84235  3.35037     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     41   2.99061  3.65075  0.11049  3.56205     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     42   3.50494  0.12196  3.55129  2.88100     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     43   0.13392  3.44273  2.84235  3.35037     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     44   3.15211  2.63547  3.19782  0.16877     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
+     45   0.13392  3.44273  2.84235  3.35037     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01794  4.02970        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fourd_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:50:19 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2411741823
+STATS LOCAL MSV       -7.4996  0.72813
+STATS LOCAL VITERBI   -8.2421  0.72813
+STATS LOCAL FORWARD   -3.5693  0.72813
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29173  1.34306  1.49811  1.42459
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.81865  0.23582  2.88868  2.35662     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_foure_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:50:27 2012
+NSEQ  9
+EFFN  3.555176
+CKSUM 2325224462
+STATS LOCAL MSV       -7.6336  0.71932
+STATS LOCAL VITERBI   -7.6152  0.71932
+STATS LOCAL FORWARD   -4.2181  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29437  1.30759  1.70004  1.29908
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  0.00000        *
+      1   3.16150  2.64143  3.20685  0.16736      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+      2   1.60524  2.26043  2.40622  0.50303      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+      3   3.16150  2.64143  3.20685  0.16736      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+      4   3.16150  2.64143  3.20685  0.16736      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+      5   2.99686  3.65992  0.10956  3.57220      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+      6   0.13279  3.45189  2.84825  3.36042      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+      7   3.51544  0.12080  3.56134  2.88856      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+      8   3.51544  0.12080  3.56134  2.88856      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+      9   3.16150  2.64143  3.20685  0.16736      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     10   3.51544  0.12080  3.56134  2.88856     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     11   0.13279  3.45189  2.84825  3.36042     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     12   0.13279  3.45189  2.84825  3.36042     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     13   3.51544  0.12080  3.56134  2.88856     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     14   3.16150  2.64143  3.20685  0.16736     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     15   3.51544  0.12080  3.56134  2.88856     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     16   0.13279  3.45189  2.84825  3.36042     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     17   2.99686  3.65992  0.10956  3.57220     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     18   3.16150  2.64143  3.20685  0.16736     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     19   3.51544  0.12080  3.56134  2.88856     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     20   2.99686  3.65992  0.10956  3.57220     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     21   0.67646  2.27465  2.22456  1.27069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     22   2.99686  3.65992  0.10956  3.57220     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     23   0.13279  3.45189  2.84825  3.36042     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     24   3.16150  2.64143  3.20685  0.16736     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     25   3.16150  2.64143  3.20685  0.16736     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     26   0.13279  3.45189  2.84825  3.36042     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     27   3.51544  0.12080  3.56134  2.88856     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     28   3.51544  0.12080  3.56134  2.88856     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     29   3.51544  0.12080  3.56134  2.88856     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     30   2.99686  3.65992  0.10956  3.57220     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     31   3.51544  0.12080  3.56134  2.88856     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     32   3.16150  2.64143  3.20685  0.16736     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     33   2.99686  3.65992  0.10956  3.57220     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     34   0.13279  3.45189  2.84825  3.36042     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     35   0.13279  3.45189  2.84825  3.36042     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     36   3.51544  0.12080  3.56134  2.88856     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     37   3.16150  2.64143  3.20685  0.16736     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     38   3.16150  2.64143  3.20685  0.16736     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     39   0.13279  3.45189  2.84825  3.36042     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     40   0.13279  3.45189  2.84825  3.36042     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     41   2.99686  3.65992  0.10956  3.57220     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     42   3.51544  0.12080  3.56134  2.88856     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     43   0.13279  3.45189  2.84825  3.36042     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     44   3.16150  2.64143  3.20685  0.16736     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
+     45   0.13279  3.45189  2.84825  3.36042     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01784  4.03516        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fourf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:50:34 2012
+NSEQ  4
+EFFN  3.191406
+CKSUM 3539407318
+STATS LOCAL MSV       -7.9359  0.71933
+STATS LOCAL VITERBI   -7.6471  0.71933
+STATS LOCAL FORWARD   -4.1152  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22385  1.20875  1.52623  1.66084
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  0.00000        *
+      1   3.38354  0.13628  3.43507  2.79277      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      2   2.91732  3.54398  0.12206  3.44415      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      3   3.38354  0.13628  3.43507  2.79277      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      4   3.38354  0.13628  3.43507  2.79277      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      5   2.91732  3.54398  0.12206  3.44415      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      6   0.14770  3.33730  2.77393  3.23493      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      7   3.38354  0.13628  3.43507  2.79277      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      8   3.38354  0.13628  3.43507  2.79277      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      9   3.04545  2.56765  3.09524  0.18579      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     10   3.38354  0.13628  3.43507  2.79277     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     11   0.14770  3.33730  2.77393  3.23493     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     12   2.91732  3.54398  0.12206  3.44415     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     13   0.14770  3.33730  2.77393  3.23493     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     14   3.04545  2.56765  3.09524  0.18579     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     15   3.38354  0.13628  3.43507  2.79277     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     16   0.14770  3.33730  2.77393  3.23493     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     17   2.91732  3.54398  0.12206  3.44415     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     18   2.91732  3.54398  0.12206  3.44415     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     19   3.04545  2.56765  3.09524  0.18579     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     20   0.14770  3.33730  2.77393  3.23493     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     21   0.14770  3.33730  2.77393  3.23493     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     22   2.91732  3.54398  0.12206  3.44415     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     23   0.14770  3.33730  2.77393  3.23493     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     24   3.38354  0.13628  3.43507  2.79277     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     25   3.04545  2.56765  3.09524  0.18579     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     26   0.14770  3.33730  2.77393  3.23493     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     27   3.38354  0.13628  3.43507  2.79277     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     28   3.38354  0.13628  3.43507  2.79277     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     29   3.38354  0.13628  3.43507  2.79277     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     30   2.91732  3.54398  0.12206  3.44415     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     31   3.38354  0.13628  3.43507  2.79277     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     32   3.04545  2.56765  3.09524  0.18579     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     33   2.91732  3.54398  0.12206  3.44415     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     34   0.14770  3.33730  2.77393  3.23493     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     35   0.14770  3.33730  2.77393  3.23493     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     36   3.38354  0.13628  3.43507  2.79277     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     37   3.04545  2.56765  3.09524  0.18579     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     38   3.04545  2.56765  3.09524  0.18579     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     39   0.14770  3.33730  2.77393  3.23493     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     40   0.14770  3.33730  2.77393  3.23493     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     41   2.91732  3.54398  0.12206  3.44415     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     42   3.38354  0.13628  3.43507  2.79277     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     43   0.14770  3.33730  2.77393  3.23493     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     44   3.04545  2.56765  3.09524  0.18579     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     45   0.14770  3.33730  2.77393  3.23493     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01908  3.96867        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fourg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:50:42 2012
+NSEQ  4
+EFFN  3.222656
+CKSUM 3193793341
+STATS LOCAL MSV       -8.0374  0.71931
+STATS LOCAL VITERBI   -7.7274  0.71931
+STATS LOCAL FORWARD   -4.1558  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34230  1.26497  1.45321  1.50198
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  0.00000        *
+      1   3.05586  2.57429  3.10526  0.18405      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      2   3.05586  2.57429  3.10526  0.18405      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      3   2.92468  3.55461  0.12085  3.45586      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      4   3.39555  0.13478  3.44658  2.80157      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      5   0.14627  3.34770  2.78072  3.24630      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      6   0.14627  3.34770  2.78072  3.24630      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      7   3.39555  0.13478  3.44658  2.80157      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      8   3.39555  0.13478  3.44658  2.80157      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      9   3.05586  2.57429  3.10526  0.18405      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     10   2.92468  3.55461  0.12085  3.45586     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     11   0.14627  3.34770  2.78072  3.24630     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     12   2.92468  3.55461  0.12085  3.45586     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     13   3.39555  0.13478  3.44658  2.80157     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     14   3.05586  2.57429  3.10526  0.18405     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     15   3.39555  0.13478  3.44658  2.80157     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     16   0.14627  3.34770  2.78072  3.24630     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     17   2.92468  3.55461  0.12085  3.45586     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     18   2.92468  3.55461  0.12085  3.45586     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     19   3.39555  0.13478  3.44658  2.80157     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     20   2.92468  3.55461  0.12085  3.45586     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     21   3.05586  2.57429  3.10526  0.18405     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     22   2.92468  3.55461  0.12085  3.45586     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     23   0.14627  3.34770  2.78072  3.24630     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     24   3.39555  0.13478  3.44658  2.80157     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     25   3.05586  2.57429  3.10526  0.18405     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     26   0.14627  3.34770  2.78072  3.24630     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     27   3.39555  0.13478  3.44658  2.80157     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     28   3.39555  0.13478  3.44658  2.80157     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     29   3.39555  0.13478  3.44658  2.80157     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     30   2.92468  3.55461  0.12085  3.45586     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     31   3.39555  0.13478  3.44658  2.80157     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     32   3.05586  2.57429  3.10526  0.18405     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     33   2.92468  3.55461  0.12085  3.45586     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     34   0.14627  3.34770  2.78072  3.24630     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     35   0.14627  3.34770  2.78072  3.24630     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     36   3.39555  0.13478  3.44658  2.80157     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     37   3.05586  2.57429  3.10526  0.18405     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     38   3.05586  2.57429  3.10526  0.18405     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     39   0.14627  3.34770  2.78072  3.24630     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     40   0.14627  3.34770  2.78072  3.24630     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     41   2.92468  3.55461  0.12085  3.45586     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     42   3.39555  0.13478  3.44658  2.80157     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     43   0.14627  3.34770  2.78072  3.24630     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     44   3.05586  2.57429  3.10526  0.18405     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     45   0.14627  3.34770  2.78072  3.24630     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01897  3.97456        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fourh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:50:49 2012
+NSEQ  5
+EFFN  3.618164
+CKSUM 1272895122
+STATS LOCAL MSV       -7.8380  0.71931
+STATS LOCAL VITERBI   -7.5794  0.71931
+STATS LOCAL FORWARD   -4.2052  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.35166  1.37041  1.65451  1.21739
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  0.00000        *
+      1   0.78521  2.22532  2.20420  1.12207      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+      2   3.18050  2.65347  3.22511  0.16455      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+      3   3.18050  2.65347  3.22511  0.16455      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+      4   3.18050  2.65347  3.22511  0.16455      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+      5   3.00938  3.67836  0.10771  3.59263      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+      6   0.13055  3.47036  2.86015  3.38070      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+      7   3.53660  0.11852  3.58156  2.90375      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+      8   3.53660  0.11852  3.58156  2.90375      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+      9   3.18050  2.65347  3.22511  0.16455      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     10   3.53660  0.11852  3.58156  2.90375     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     11   0.13055  3.47036  2.86015  3.38070     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     12   1.13075  2.61649  0.65419  2.47353     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     13   3.53660  0.11852  3.58156  2.90375     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     14   3.18050  2.65347  3.22511  0.16455     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     15   3.53660  0.11852  3.58156  2.90375     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     16   0.13055  3.47036  2.86015  3.38070     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     17   3.00938  3.67836  0.10771  3.59263     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     18   3.18050  2.65347  3.22511  0.16455     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     19   3.53660  0.11852  3.58156  2.90375     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     20   3.00938  3.67836  0.10771  3.59263     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     21   3.18050  2.65347  3.22511  0.16455     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     22   3.00938  3.67836  0.10771  3.59263     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     23   0.13055  3.47036  2.86015  3.38070     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     24   3.18050  2.65347  3.22511  0.16455     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     25   3.18050  2.65347  3.22511  0.16455     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     26   0.13055  3.47036  2.86015  3.38070     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     27   3.53660  0.11852  3.58156  2.90375     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     28   3.53660  0.11852  3.58156  2.90375     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     29   3.53660  0.11852  3.58156  2.90375     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     30   3.00938  3.67836  0.10771  3.59263     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     31   3.53660  0.11852  3.58156  2.90375     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     32   3.18050  2.65347  3.22511  0.16455     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     33   3.00938  3.67836  0.10771  3.59263     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     34   0.13055  3.47036  2.86015  3.38070     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     35   0.13055  3.47036  2.86015  3.38070     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     36   3.18050  2.65347  3.22511  0.16455     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     37   3.18050  2.65347  3.22511  0.16455     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     38   3.18050  2.65347  3.22511  0.16455     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     39   0.13055  3.47036  2.86015  3.38070     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     40   0.13055  3.47036  2.86015  3.38070     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     41   3.00938  3.67836  0.10771  3.59263     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     42   3.53660  0.11852  3.58156  2.90375     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     43   0.13055  3.47036  2.86015  3.38070     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     44   3.18050  2.65347  3.22511  0.16455     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
+     45   0.13055  3.47036  2.86015  3.38070     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01764  4.04623        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fouri_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:50:55 2012
+NSEQ  8
+EFFN  3.214844
+CKSUM 1186784676
+STATS LOCAL MSV       -8.2425  0.71931
+STATS LOCAL VITERBI   -7.6389  0.71931
+STATS LOCAL FORWARD   -4.1147  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11464  1.26796  1.60640  1.66097
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  0.00000        *
+      1   3.39256  0.13515  3.44371  2.79938      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      2   3.05326  2.57263  3.10276  0.18448      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      3   0.14663  3.34511  2.77903  3.24347      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      4   3.39256  0.13515  3.44371  2.79938      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      5   2.92285  3.55196  0.12115  3.45295      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      6   0.14663  3.34511  2.77903  3.24347      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      7   3.39256  0.13515  3.44371  2.79938      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      8   3.39256  0.13515  3.44371  2.79938      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      9   3.05326  2.57263  3.10276  0.18448      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     10   3.39256  0.13515  3.44371  2.79938     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     11   0.14663  3.34511  2.77903  3.24347     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     12   2.92285  3.55196  0.12115  3.45295     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     13   0.14663  3.34511  2.77903  3.24347     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     14   3.05326  2.57263  3.10276  0.18448     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     15   3.39256  0.13515  3.44371  2.79938     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     16   0.14663  3.34511  2.77903  3.24347     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     17   2.92285  3.55196  0.12115  3.45295     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     18   0.14663  3.34511  2.77903  3.24347     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     19   3.39256  0.13515  3.44371  2.79938     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     20   2.92285  3.55196  0.12115  3.45295     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     21   0.14663  3.34511  2.77903  3.24347     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     22   2.92285  3.55196  0.12115  3.45295     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     23   0.14663  3.34511  2.77903  3.24347     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     24   3.39256  0.13515  3.44371  2.79938     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     25   0.14663  3.34511  2.77903  3.24347     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     26   0.14663  3.34511  2.77903  3.24347     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     27   3.39256  0.13515  3.44371  2.79938     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     28   3.39256  0.13515  3.44371  2.79938     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     29   3.39256  0.13515  3.44371  2.79938     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     30   2.92285  3.55196  0.12115  3.45295     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     31   3.39256  0.13515  3.44371  2.79938     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     32   3.05326  2.57263  3.10276  0.18448     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     33   2.92285  3.55196  0.12115  3.45295     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     34   0.14663  3.34511  2.77903  3.24347     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     35   0.14663  3.34511  2.77903  3.24347     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     36   3.05326  2.57263  3.10276  0.18448     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     37   3.05326  2.57263  3.10276  0.18448     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     38   3.05326  2.57263  3.10276  0.18448     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     39   0.14663  3.34511  2.77903  3.24347     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     40   0.14663  3.34511  2.77903  3.24347     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     41   2.92285  3.55196  0.12115  3.45295     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     42   3.39256  0.13515  3.44371  2.79938     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     43   0.14663  3.34511  2.77903  3.24347     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     44   3.05326  2.57263  3.10276  0.18448     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     45   0.14663  3.34511  2.77903  3.24347     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01899  3.97309        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fourj_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:51:02 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2351947980
+STATS LOCAL MSV       -8.2579  0.72001
+STATS LOCAL VITERBI   -7.8277  0.72001
+STATS LOCAL FORWARD   -4.0042  0.72001
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16841  1.27582  1.44578  1.74654
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fourk_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:51:10 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 4061155062
+STATS LOCAL MSV       -8.1678  0.72014
+STATS LOCAL VITERBI   -7.7322  0.72014
+STATS LOCAL FORWARD   -3.9807  0.72014
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28224  1.27007  1.44862  1.57562
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.86982  3.47591  0.13017  3.36931     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   3.30705  0.14631  3.36166  2.73626     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fourl_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:51:16 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 292764534
+STATS LOCAL MSV       -8.1090  0.72071
+STATS LOCAL VITERBI   -7.7116  0.72071
+STATS LOCAL FORWARD   -4.0241  0.72071
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22065  1.35244  1.51762  1.48228
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.43223  0.62271  2.50508  1.22417     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fourm_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:51:24 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1681735314
+STATS LOCAL MSV       -7.3397  0.72792
+STATS LOCAL VITERBI   -8.2563  0.72792
+STATS LOCAL FORWARD   -3.7770  0.72792
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34610  1.29011  1.43454  1.48598
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fourn_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:51:31 2012
+NSEQ  4
+EFFN  3.324219
+CKSUM 308035123
+STATS LOCAL MSV       -8.2459  0.71933
+STATS LOCAL VITERBI   -7.6656  0.71933
+STATS LOCAL FORWARD   -4.1464  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33918  1.38085  1.61344  1.24697
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  0.00000        *
+      1   0.14183  3.38076  2.80224  3.28247      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      2   3.08911  2.59546  3.13724  0.17860      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      3   3.08911  2.59546  3.13724  0.17860      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      4   3.08911  2.59546  3.13724  0.17860      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      5   2.94787  3.58826  0.11710  3.49298      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      6   0.14183  3.38076  2.80224  3.28247      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      7   3.43368  0.13014  3.48311  2.82941      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      8   3.43368  0.13014  3.48311  2.82941      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      9   3.08911  2.59546  3.13724  0.17860      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     10   3.43368  0.13014  3.48311  2.82941     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     11   0.14183  3.38076  2.80224  3.28247     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     12   2.94787  3.58826  0.11710  3.49298     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     13   3.43368  0.13014  3.48311  2.82941     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     14   3.08911  2.59546  3.13724  0.17860     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     15   3.43368  0.13014  3.48311  2.82941     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     16   0.14183  3.38076  2.80224  3.28247     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     17   2.94787  3.58826  0.11710  3.49298     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     18   3.08911  2.59546  3.13724  0.17860     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     19   3.43368  0.13014  3.48311  2.82941     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     20   2.94787  3.58826  0.11710  3.49298     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     21   3.08911  2.59546  3.13724  0.17860     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     22   2.94787  3.58826  0.11710  3.49298     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     23   0.14183  3.38076  2.80224  3.28247     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     24   3.08911  2.59546  3.13724  0.17860     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     25   3.08911  2.59546  3.13724  0.17860     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     26   0.14183  3.38076  2.80224  3.28247     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     27   3.43368  0.13014  3.48311  2.82941     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     28   3.43368  0.13014  3.48311  2.82941     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     29   3.43368  0.13014  3.48311  2.82941     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     30   2.94787  3.58826  0.11710  3.49298     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     31   3.43368  0.13014  3.48311  2.82941     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     32   3.08911  2.59546  3.13724  0.17860     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     33   2.94787  3.58826  0.11710  3.49298     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     34   0.14183  3.38076  2.80224  3.28247     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     35   0.14183  3.38076  2.80224  3.28247     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     36   3.08911  2.59546  3.13724  0.17860     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     37   3.08911  2.59546  3.13724  0.17860     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     38   3.08911  2.59546  3.13724  0.17860     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     39   0.14183  3.38076  2.80224  3.28247     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     40   0.14183  3.38076  2.80224  3.28247     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     41   2.94787  3.58826  0.11710  3.49298     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     42   3.43368  0.13014  3.48311  2.82941     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     43   0.14183  3.38076  2.80224  3.28247     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     44   3.08911  2.59546  3.13724  0.17860     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     45   0.14183  3.38076  2.80224  3.28247     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01861  3.99346        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fouro_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:51:39 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 156050492
+STATS LOCAL MSV       -8.0097  0.72066
+STATS LOCAL VITERBI   -7.7228  0.72066
+STATS LOCAL FORWARD   -4.1160  0.72066
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34354  1.31352  1.69463  1.24988
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fourp_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:51:45 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 435892151
+STATS LOCAL MSV       -8.2073  0.72146
+STATS LOCAL VITERBI   -7.7951  0.72146
+STATS LOCAL FORWARD   -4.0277  0.72146
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39771  1.35938  1.58160  1.23659
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.42752  1.34012  2.49742  0.56628      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.11867  2.11575  1.35978  0.68806      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_fourteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:58:33 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2215319068
+STATS LOCAL MSV       -8.1736  0.72037
+STATS LOCAL VITERBI   -7.8757  0.72037
+STATS LOCAL FORWARD   -4.0709  0.72037
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22282  1.39082  1.52048  1.43496
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   0.15719  3.27118  2.73043  3.16274      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   3.30705  0.14631  3.36166  2.73626     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:56:58 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 957197694
+STATS LOCAL MSV       -7.8664  0.72063
+STATS LOCAL VITERBI   -7.7547  0.72063
+STATS LOCAL FORWARD   -4.2553  0.72063
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34194  1.38068  1.60488  1.25057
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.86982  3.47591  0.13017  3.36931     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.97980  2.52563  3.03204  0.19727     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.86982  3.47591  0.13017  3.36931     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   0.15719  3.27118  2.73043  3.16274     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.86982  3.47591  0.13017  3.36931     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_nineteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:59:36 2012
+NSEQ  6
+EFFN  3.249023
+CKSUM 2236108995
+STATS LOCAL MSV       -8.0378  0.71932
+STATS LOCAL VITERBI   -7.6712  0.71932
+STATS LOCAL FORWARD   -4.0582  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33869  1.34207  1.31167  1.57438
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  0.00000        *
+      1   3.40558  0.13354  3.45619  2.80891      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      2   2.93080  3.56347  0.11985  3.46564      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      3   3.06457  2.57984  3.11364  0.18260      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      4   3.06457  2.57984  3.11364  0.18260      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      5   2.93080  3.56347  0.11985  3.46564      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      6   2.93080  3.56347  0.11985  3.46564      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      7   3.40558  0.13354  3.45619  2.80891      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      8   3.40558  0.13354  3.45619  2.80891      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      9   3.06457  2.57984  3.11364  0.18260      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     10   3.40558  0.13354  3.45619  2.80891     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     11   0.14509  3.35639  2.78639  3.25580     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     12   2.93080  3.56347  0.11985  3.46564     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     13   0.14509  3.35639  2.78639  3.25580     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     14   3.06457  2.57984  3.11364  0.18260     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     15   3.40558  0.13354  3.45619  2.80891     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     16   0.14509  3.35639  2.78639  3.25580     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     17   2.93080  3.56347  0.11985  3.46564     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     18   2.93080  3.56347  0.11985  3.46564     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     19   2.93080  3.56347  0.11985  3.46564     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     20   0.14509  3.35639  2.78639  3.25580     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     21   2.93080  3.56347  0.11985  3.46564     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     22   2.93080  3.56347  0.11985  3.46564     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     23   0.14509  3.35639  2.78639  3.25580     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     24   3.06457  2.57984  3.11364  0.18260     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     25   2.81213  0.32485  2.87865  1.82586     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     26   0.14509  3.35639  2.78639  3.25580     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     27   3.40558  0.13354  3.45619  2.80891     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     28   3.40558  0.13354  3.45619  2.80891     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     29   3.40558  0.13354  3.45619  2.80891     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     30   2.93080  3.56347  0.11985  3.46564     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     31   3.40558  0.13354  3.45619  2.80891     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     32   3.40558  0.13354  3.45619  2.80891     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     33   2.93080  3.56347  0.11985  3.46564     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     34   0.14509  3.35639  2.78639  3.25580     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     35   0.14509  3.35639  2.78639  3.25580     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     36   3.06457  2.57984  3.11364  0.18260     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     37   3.06457  2.57984  3.11364  0.18260     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     38   3.06457  2.57984  3.11364  0.18260     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     39   0.14509  3.35639  2.78639  3.25580     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     40   0.14509  3.35639  2.78639  3.25580     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     41   2.93080  3.56347  0.11985  3.46564     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     42   3.40558  0.13354  3.45619  2.80891     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     43   0.14509  3.35639  2.78639  3.25580     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     44   3.06457  2.57984  3.11364  0.18260     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     45   0.14509  3.35639  2.78639  3.25580     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01887  3.97950        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:49:27 2012
+NSEQ  33
+EFFN  3.782593
+CKSUM 1346394840
+STATS LOCAL MSV       -6.9525  0.71933
+STATS LOCAL VITERBI   -7.7827  0.71933
+STATS LOCAL FORWARD   -4.3549  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33115  1.23617  1.49619  1.50800
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  0.00000        *
+      1   1.79792  1.68197  1.18854  1.06803      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+      2   3.58965  0.11299  3.63221  2.94165      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+      3   3.58965  0.11299  3.63221  2.94165      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+      4   3.22866  2.68399  3.27137  0.15765      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+      5   3.04057  3.72442  0.10324  3.64370      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+      6   0.12511  3.51682  2.89001  3.43172      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+      7   3.58965  0.11299  3.63221  2.94165      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+      8   3.58965  0.11299  3.63221  2.94165      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+      9   3.22866  2.68399  3.27137  0.15765      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     10   3.58965  0.11299  3.63221  2.94165     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     11   3.04057  3.72442  0.10324  3.64370     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     12   3.04057  3.72442  0.10324  3.64370     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     13   0.12511  3.51682  2.89001  3.43172     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     14   3.22866  2.68399  3.27137  0.15765     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     15   3.58965  0.11299  3.63221  2.94165     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     16   0.12511  3.51682  2.89001  3.43172     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     17   3.04057  3.72442  0.10324  3.64370     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     18   0.70542  2.28199  2.24204  1.21141     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     19   3.09248  0.23985  3.15223  2.07858     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     20   3.04057  3.72442  0.10324  3.64370     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     21   3.22866  2.68399  3.27137  0.15765     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     22   3.04057  3.72442  0.10324  3.64370     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     23   0.12511  3.51682  2.89001  3.43172     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     24   0.86847  1.42296  1.86945  1.68632     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     25   3.22866  2.68399  3.27137  0.15765     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     26   0.12511  3.51682  2.89001  3.43172     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     27   3.58965  0.11299  3.63221  2.94165     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     28   3.58965  0.11299  3.63221  2.94165     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     29   3.58965  0.11299  3.63221  2.94165     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     30   3.04057  3.72442  0.10324  3.64370     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     31   3.58965  0.11299  3.63221  2.94165     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     32   3.22866  2.68399  3.27137  0.15765     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     33   3.04057  3.72442  0.10324  3.64370     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     34   0.12511  3.51682  2.89001  3.43172     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     35   0.12511  3.51682  2.89001  3.43172     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     36   3.58965  0.11299  3.63221  2.94165     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     37   3.22866  2.68399  3.27137  0.15765     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     38   3.22866  2.68399  3.27137  0.15765     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     39   0.12511  3.51682  2.89001  3.43172     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     40   0.12511  3.51682  2.89001  3.43172     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     41   3.04057  3.72442  0.10324  3.64370     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     42   3.58965  0.11299  3.63221  2.94165     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     43   0.12511  3.51682  2.89001  3.43172     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     44   3.22866  2.68399  3.27137  0.15765     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
+     45   0.12511  3.51682  2.89001  3.43172     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01715  4.07458        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:55:54 2012
+NSEQ  11
+EFFN  3.386475
+CKSUM 2691176843
+STATS LOCAL MSV       -7.6622  0.71931
+STATS LOCAL VITERBI   -7.6860  0.71931
+STATS LOCAL FORWARD   -4.0876  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.09796  1.45969  1.60061  1.45943
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  0.00000        *
+      1   1.46370  2.19900  2.30983  0.58262      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+      2   3.10905  2.60814  3.15643  0.17542      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+      3   3.10905  2.60814  3.15643  0.17542      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+      4   3.10905  2.60814  3.15643  0.17542      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+      5   2.96157  3.60822  0.11494  3.51502      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+      6   0.13926  3.40047  2.81503  3.30406      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+      7   3.45638  0.12747  3.50485  2.84591      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+      8   3.45638  0.12747  3.50485  2.84591      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+      9   3.10905  2.60814  3.15643  0.17542      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     10   3.45638  0.12747  3.50485  2.84591     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     11   0.13926  3.40047  2.81503  3.30406     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     12   2.96157  3.60822  0.11494  3.51502     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     13   0.13926  3.40047  2.81503  3.30406     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     14   3.10905  2.60814  3.15643  0.17542     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     15   3.10905  2.60814  3.15643  0.17542     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     16   0.13926  3.40047  2.81503  3.30406     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     17   2.96157  3.60822  0.11494  3.51502     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     18   0.13926  3.40047  2.81503  3.30406     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     19   3.45638  0.12747  3.50485  2.84591     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     20   2.96157  3.60822  0.11494  3.51502     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     21   0.13926  3.40047  2.81503  3.30406     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     22   2.96157  3.60822  0.11494  3.51502     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     23   0.13926  3.40047  2.81503  3.30406     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     24   0.13926  3.40047  2.81503  3.30406     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     25   0.13926  3.40047  2.81503  3.30406     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     26   0.13926  3.40047  2.81503  3.30406     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     27   3.45638  0.12747  3.50485  2.84591     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     28   3.45638  0.12747  3.50485  2.84591     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     29   3.45638  0.12747  3.50485  2.84591     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     30   2.96157  3.60822  0.11494  3.51502     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     31   3.45638  0.12747  3.50485  2.84591     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     32   3.45638  0.12747  3.50485  2.84591     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     33   2.96157  3.60822  0.11494  3.51502     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     34   0.13926  3.40047  2.81503  3.30406     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     35   0.13926  3.40047  2.81503  3.30406     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     36   3.10905  2.60814  3.15643  0.17542     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     37   3.10905  2.60814  3.15643  0.17542     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     38   3.10905  2.60814  3.15643  0.17542     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     39   0.13926  3.40047  2.81503  3.30406     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     40   0.13926  3.40047  2.81503  3.30406     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     41   2.96157  3.60822  0.11494  3.51502     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     42   3.45638  0.12747  3.50485  2.84591     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     43   0.13926  3.40047  2.81503  3.30406     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     44   3.10905  2.60814  3.15643  0.17542     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
+     45   0.13926  3.40047  2.81503  3.30406     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01839  4.00487        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_seventeen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:59:03 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1512331715
+STATS LOCAL MSV       -8.1035  0.72050
+STATS LOCAL VITERBI   -7.6844  0.72050
+STATS LOCAL FORWARD   -3.8942  0.72050
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22117  1.29747  1.43994  1.63500
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.43223  0.62271  2.50508  1.22417     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_sixa_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:54:30 2012
+NSEQ  18
+EFFN  3.563965
+CKSUM 135894155
+STATS LOCAL MSV       -7.5770  0.71933
+STATS LOCAL VITERBI   -7.7641  0.71933
+STATS LOCAL FORWARD   -4.1313  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.24017  1.30645  1.59844  1.43686
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  0.00000        *
+      1   3.16417  2.64312  3.20941  0.16696      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      2   3.16417  2.64312  3.20941  0.16696      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      3   3.16417  2.64312  3.20941  0.16696      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      4   3.51842  0.12048  3.56419  2.89070      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      5   2.99862  3.66252  0.10930  3.57508      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      6   0.13247  3.45449  2.84993  3.36328      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      7   3.51842  0.12048  3.56419  2.89070      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      8   3.51842  0.12048  3.56419  2.89070      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+      9   3.16417  2.64312  3.20941  0.16696      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     10   2.99862  3.66252  0.10930  3.57508     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     11   0.13247  3.45449  2.84993  3.36328     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     12   0.13247  3.45449  2.84993  3.36328     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     13   3.06631  0.23765  3.12667  2.11143     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     14   3.16417  2.64312  3.20941  0.16696     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     15   3.51842  0.12048  3.56419  2.89070     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     16   0.13247  3.45449  2.84993  3.36328     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     17   2.99862  3.66252  0.10930  3.57508     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     18   0.13247  3.45449  2.84993  3.36328     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     19   3.51842  0.12048  3.56419  2.89070     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     20   2.99862  3.66252  0.10930  3.57508     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     21   3.16417  2.64312  3.20941  0.16696     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     22   2.99862  3.66252  0.10930  3.57508     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     23   0.13247  3.45449  2.84993  3.36328     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     24   0.66567  2.24869  1.69048  1.62913     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     25   2.50555  1.22857  2.57478  0.59877     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     26   0.13247  3.45449  2.84993  3.36328     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     27   3.51842  0.12048  3.56419  2.89070     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     28   3.51842  0.12048  3.56419  2.89070     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     29   3.51842  0.12048  3.56419  2.89070     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     30   2.99862  3.66252  0.10930  3.57508     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     31   3.51842  0.12048  3.56419  2.89070     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     32   3.16417  2.64312  3.20941  0.16696     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     33   2.99862  3.66252  0.10930  3.57508     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     34   0.13247  3.45449  2.84993  3.36328     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     35   0.13247  3.45449  2.84993  3.36328     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     36   3.51842  0.12048  3.56419  2.89070     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     37   3.16417  2.64312  3.20941  0.16696     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     38   3.16417  2.64312  3.20941  0.16696     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     39   0.13247  3.45449  2.84993  3.36328     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     40   0.13247  3.45449  2.84993  3.36328     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     41   2.99862  3.66252  0.10930  3.57508     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     42   3.51842  0.12048  3.56419  2.89070     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     43   0.13247  3.45449  2.84993  3.36328     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     44   3.16417  2.64312  3.20941  0.16696     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
+     45   0.13247  3.45449  2.84993  3.36328     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01781  4.03671        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_sixb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:54:37 2012
+NSEQ  4
+EFFN  3.363281
+CKSUM 3601354860
+STATS LOCAL MSV       -8.0016  0.71931
+STATS LOCAL VITERBI   -7.7630  0.71931
+STATS LOCAL FORWARD   -4.1610  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27366  1.29926  1.52617  1.46927
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  0.00000        *
+      1   0.14020  3.39317  2.81030  3.29606      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      2   3.10166  2.60344  3.14932  0.17659      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      3   2.41261  0.95620  2.48463  0.81484      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      4   3.44798  0.12845  3.49681  2.83981      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      5   2.95651  3.60084  0.11574  3.50687      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      6   0.14020  3.39317  2.81030  3.29606      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      7   3.44798  0.12845  3.49681  2.83981      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      8   3.44798  0.12845  3.49681  2.83981      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+      9   3.10166  2.60344  3.14932  0.17659      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     10   2.95651  3.60084  0.11574  3.50687     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     11   0.14020  3.39317  2.81030  3.29606     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     12   0.14020  3.39317  2.81030  3.29606     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     13   3.44798  0.12845  3.49681  2.83981     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     14   3.10166  2.60344  3.14932  0.17659     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     15   3.44798  0.12845  3.49681  2.83981     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     16   0.14020  3.39317  2.81030  3.29606     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     17   2.95651  3.60084  0.11574  3.50687     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     18   0.14020  3.39317  2.81030  3.29606     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     19   3.44798  0.12845  3.49681  2.83981     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     20   2.95651  3.60084  0.11574  3.50687     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     21   3.10166  2.60344  3.14932  0.17659     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     22   2.95651  3.60084  0.11574  3.50687     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     23   2.95651  3.60084  0.11574  3.50687     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     24   3.10166  2.60344  3.14932  0.17659     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     25   3.10166  2.60344  3.14932  0.17659     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     26   0.14020  3.39317  2.81030  3.29606     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     27   3.44798  0.12845  3.49681  2.83981     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     28   3.44798  0.12845  3.49681  2.83981     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     29   3.44798  0.12845  3.49681  2.83981     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     30   2.95651  3.60084  0.11574  3.50687     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     31   3.44798  0.12845  3.49681  2.83981     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     32   3.10166  2.60344  3.14932  0.17659     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     33   2.95651  3.60084  0.11574  3.50687     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     34   0.14020  3.39317  2.81030  3.29606     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     35   0.14020  3.39317  2.81030  3.29606     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     36   3.44798  0.12845  3.49681  2.83981     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     37   3.10166  2.60344  3.14932  0.17659     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     38   3.10166  2.60344  3.14932  0.17659     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     39   0.14020  3.39317  2.81030  3.29606     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     40   0.14020  3.39317  2.81030  3.29606     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     41   2.95651  3.60084  0.11574  3.50687     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     42   3.44798  0.12845  3.49681  2.83981     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     43   0.14020  3.39317  2.81030  3.29606     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     44   3.10166  2.60344  3.14932  0.17659     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
+     45   0.14020  3.39317  2.81030  3.29606     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01847  4.00063        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_sixc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:54:52 2012
+NSEQ  7
+EFFN  3.359863
+CKSUM 2609358306
+STATS LOCAL MSV       -8.0369  0.71932
+STATS LOCAL VITERBI   -7.7132  0.71932
+STATS LOCAL FORWARD   -4.2915  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27593  1.29455  1.52632  1.47197
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  0.00000        *
+      1   3.10057  2.60274  3.14826  0.17676      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+      2   3.10057  2.60274  3.14826  0.17676      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+      3   3.10057  2.60274  3.14826  0.17676      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+      4   3.44674  0.12859  3.49562  2.83891      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+      5   2.95576  3.59975  0.11586  3.50566      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+      6   0.14034  3.39209  2.80960  3.29488      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+      7   3.44674  0.12859  3.49562  2.83891      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+      8   3.44674  0.12859  3.49562  2.83891      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+      9   3.10057  2.60274  3.14826  0.17676      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     10   2.95576  3.59975  0.11586  3.50566     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     11   0.14034  3.39209  2.80960  3.29488     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     12   0.14034  3.39209  2.80960  3.29488     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     13   3.44674  0.12859  3.49562  2.83891     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     14   3.10057  2.60274  3.14826  0.17676     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     15   3.44674  0.12859  3.49562  2.83891     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     16   0.14034  3.39209  2.80960  3.29488     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     17   0.14034  3.39209  2.80960  3.29488     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     18   2.95576  3.59975  0.11586  3.50566     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     19   3.44674  0.12859  3.49562  2.83891     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     20   2.95576  3.59975  0.11586  3.50566     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     21   3.10057  2.60274  3.14826  0.17676     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     22   2.95576  3.59975  0.11586  3.50566     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     23   0.14034  3.39209  2.80960  3.29488     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     24   2.95576  3.59975  0.11586  3.50566     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     25   2.42382  0.79725  2.49629  0.97165     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     26   0.14034  3.39209  2.80960  3.29488     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     27   3.44674  0.12859  3.49562  2.83891     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     28   3.44674  0.12859  3.49562  2.83891     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     29   3.44674  0.12859  3.49562  2.83891     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     30   2.95576  3.59975  0.11586  3.50566     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     31   3.44674  0.12859  3.49562  2.83891     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     32   3.10057  2.60274  3.14826  0.17676     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     33   2.95576  3.59975  0.11586  3.50566     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     34   0.14034  3.39209  2.80960  3.29488     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     35   0.14034  3.39209  2.80960  3.29488     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     36   3.44674  0.12859  3.49562  2.83891     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     37   3.10057  2.60274  3.14826  0.17676     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     38   3.10057  2.60274  3.14826  0.17676     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     39   0.14034  3.39209  2.80960  3.29488     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     40   0.14034  3.39209  2.80960  3.29488     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     41   2.95576  3.59975  0.11586  3.50566     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     42   3.44674  0.12859  3.49562  2.83891     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     43   0.14034  3.39209  2.80960  3.29488     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     44   3.10057  2.60274  3.14826  0.17676     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     45   0.14034  3.39209  2.80960  3.29488     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01849  4.00001        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_sixd_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:54:59 2012
+NSEQ  4
+EFFN  3.339844
+CKSUM 231546967
+STATS LOCAL MSV       -8.0309  0.71933
+STATS LOCAL VITERBI   -7.7157  0.71933
+STATS LOCAL FORWARD   -4.0543  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23306  1.38825  1.51451  1.43057
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  0.00000        *
+      1   3.09414  2.59866  3.14209  0.17779      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      2   3.09414  2.59866  3.14209  0.17779      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      3   3.09414  2.59866  3.14209  0.17779      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      4   3.43942  0.12946  3.48861  2.83359      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      5   2.95135  3.59331  0.11655  3.49856      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      6   0.14117  3.38574  2.80548  3.28793      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      7   3.43942  0.12946  3.48861  2.83359      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      8   3.43942  0.12946  3.48861  2.83359      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+      9   3.09414  2.59866  3.14209  0.17779      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     10   2.95135  3.59331  0.11655  3.49856     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     11   0.14117  3.38574  2.80548  3.28793     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     12   2.95135  3.59331  0.11655  3.49856     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     13   3.43942  0.12946  3.48861  2.83359     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     14   3.09414  2.59866  3.14209  0.17779     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     15   0.14117  3.38574  2.80548  3.28793     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     16   0.14117  3.38574  2.80548  3.28793     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     17   0.14117  3.38574  2.80548  3.28793     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     18   2.95135  3.59331  0.11655  3.49856     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     19   3.43942  0.12946  3.48861  2.83359     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     20   2.95135  3.59331  0.11655  3.49856     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     21   3.09414  2.59866  3.14209  0.17779     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     22   2.95135  3.59331  0.11655  3.49856     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     23   0.14117  3.38574  2.80548  3.28793     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     24   0.39569  2.76637  1.65002  2.63317     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     25   3.09414  2.59866  3.14209  0.17779     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     26   0.14117  3.38574  2.80548  3.28793     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     27   3.43942  0.12946  3.48861  2.83359     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     28   3.43942  0.12946  3.48861  2.83359     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     29   3.43942  0.12946  3.48861  2.83359     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     30   2.95135  3.59331  0.11655  3.49856     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     31   3.43942  0.12946  3.48861  2.83359     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     32   3.09414  2.59866  3.14209  0.17779     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     33   2.95135  3.59331  0.11655  3.49856     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     34   0.14117  3.38574  2.80548  3.28793     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     35   0.14117  3.38574  2.80548  3.28793     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     36   3.43942  0.12946  3.48861  2.83359     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     37   3.09414  2.59866  3.14209  0.17779     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     38   3.09414  2.59866  3.14209  0.17779     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     39   0.14117  3.38574  2.80548  3.28793     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     40   0.14117  3.38574  2.80548  3.28793     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     41   2.95135  3.59331  0.11655  3.49856     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     42   3.43942  0.12946  3.48861  2.83359     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     43   0.14117  3.38574  2.80548  3.28793     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     44   3.09414  2.59866  3.14209  0.17779     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
+     45   0.14117  3.38574  2.80548  3.28793     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01855  3.99634        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_sixe_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:55:04 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1628112068
+STATS LOCAL MSV       -7.5032  0.72841
+STATS LOCAL VITERBI   -8.3390  0.72841
+STATS LOCAL FORWARD   -3.4341  0.72841
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28858  1.32680  1.43161  1.51373
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.15554  1.00938  2.23102  0.88601     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_sixf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:55:09 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3055619897
+STATS LOCAL MSV       -7.4441  0.72810
+STATS LOCAL VITERBI   -8.2961  0.72810
+STATS LOCAL FORWARD   -3.6529  0.72810
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.24155  1.29109  1.56843  1.47965
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.81865  0.23582  2.88868  2.35662     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_sixg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:55:16 2012
+NSEQ  7
+EFFN  3.407715
+CKSUM 1378068430
+STATS LOCAL MSV       -7.5717  0.71933
+STATS LOCAL VITERBI   -7.7982  0.71933
+STATS LOCAL FORWARD   -4.1398  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27368  1.31689  1.57646  1.40435
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  0.00000        *
+      1   3.11579  2.61241  3.16290  0.17436      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+      2   3.11579  2.61241  3.16290  0.17436      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+      3   3.11579  2.61241  3.16290  0.17436      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+      4   3.11579  2.61241  3.16290  0.17436      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+      5   2.96616  3.61492  0.11423  3.52243      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+      6   0.13840  3.40710  2.81933  3.31132      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+      7   3.46401  0.12658  3.51215  2.85144      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+      8   3.46401  0.12658  3.51215  2.85144      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+      9   3.11579  2.61241  3.16290  0.17436      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     10   2.96616  3.61492  0.11423  3.52243     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     11   0.13840  3.40710  2.81933  3.31132     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     12   0.13840  3.40710  2.81933  3.31132     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     13   3.46401  0.12658  3.51215  2.85144     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     14   3.11579  2.61241  3.16290  0.17436     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     15   3.46401  0.12658  3.51215  2.85144     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     16   0.13840  3.40710  2.81933  3.31132     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     17   2.96616  3.61492  0.11423  3.52243     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     18   3.11579  2.61241  3.16290  0.17436     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     19   3.46401  0.12658  3.51215  2.85144     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     20   2.96616  3.61492  0.11423  3.52243     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     21   0.13840  3.40710  2.81933  3.31132     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     22   2.96616  3.61492  0.11423  3.52243     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     23   0.13840  3.40710  2.81933  3.31132     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     24   2.10784  2.18574  0.86149  1.06835     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     25   3.46401  0.12658  3.51215  2.85144     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     26   0.13840  3.40710  2.81933  3.31132     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     27   3.46401  0.12658  3.51215  2.85144     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     28   3.46401  0.12658  3.51215  2.85144     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     29   3.46401  0.12658  3.51215  2.85144     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     30   2.96616  3.61492  0.11423  3.52243     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     31   3.46401  0.12658  3.51215  2.85144     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     32   3.11579  2.61241  3.16290  0.17436     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     33   2.96616  3.61492  0.11423  3.52243     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     34   0.13840  3.40710  2.81933  3.31132     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     35   0.13840  3.40710  2.81933  3.31132     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     36   3.46401  0.12658  3.51215  2.85144     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     37   3.11579  2.61241  3.16290  0.17436     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     38   3.11579  2.61241  3.16290  0.17436     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     39   0.13840  3.40710  2.81933  3.31132     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     40   0.13840  3.40710  2.81933  3.31132     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     41   2.96616  3.61492  0.11423  3.52243     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     42   3.46401  0.12658  3.51215  2.85144     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     43   0.13840  3.40710  2.81933  3.31132     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     44   3.11579  2.61241  3.16290  0.17436     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
+     45   0.13840  3.40710  2.81933  3.31132     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01832  4.00874        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_sixteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:58:50 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2702931191
+STATS LOCAL MSV       -8.1252  0.72211
+STATS LOCAL VITERBI   -7.8013  0.72211
+STATS LOCAL FORWARD   -4.0275  0.72211
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27401  1.27647  1.47321  1.55077
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.56013  2.54906  1.34493  2.40626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   1.31182  2.57335  0.56876  2.42854     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.08990  1.41165  0.68330  2.05875     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.09644  0.73721  1.35192  1.96671     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_ten_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:57:08 2012
+NSEQ  20
+EFFN  3.813477
+CKSUM 482766231
+STATS LOCAL MSV       -7.0524  0.71931
+STATS LOCAL VITERBI   -7.7040  0.71931
+STATS LOCAL FORWARD   -4.3542  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29024  1.29052  1.51005  1.47504
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  0.00000        *
+      1   0.86422  2.22193  2.22033  1.01708      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+      2   3.23747  2.68958  3.27984  0.15643      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+      3   3.04620  3.73275  0.10245  3.65294      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+      4   3.59927  0.11202  3.64140  2.94850      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+      5   0.12415  3.52528  2.89544  3.44100      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+      6   0.12415  3.52528  2.89544  3.44100      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+      7   3.59927  0.11202  3.64140  2.94850      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+      8   3.59927  0.11202  3.64140  2.94850      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+      9   3.23747  2.68958  3.27984  0.15643      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     10   3.04620  3.73275  0.10245  3.65294     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     11   0.12415  3.52528  2.89544  3.44100     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     12   1.69592  2.94764  0.35053  2.81692     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     13   3.59927  0.11202  3.64140  2.94850     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     14   3.23747  2.68958  3.27984  0.15643     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     15   3.59927  0.11202  3.64140  2.94850     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     16   0.12415  3.52528  2.89544  3.44100     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     17   3.04620  3.73275  0.10245  3.65294     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     18   2.15720  2.22527  0.88333  1.01360     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     19   3.59927  0.11202  3.64140  2.94850     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     20   3.04620  3.73275  0.10245  3.65294     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     21   3.23747  2.68958  3.27984  0.15643     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     22   3.04620  3.73275  0.10245  3.65294     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     23   0.12415  3.52528  2.89544  3.44100     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     24   2.88047  1.89372  2.93767  0.30057     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     25   3.23747  2.68958  3.27984  0.15643     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     26   0.12415  3.52528  2.89544  3.44100     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     27   3.59927  0.11202  3.64140  2.94850     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     28   3.59927  0.11202  3.64140  2.94850     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     29   3.59927  0.11202  3.64140  2.94850     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     30   3.04620  3.73275  0.10245  3.65294     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     31   3.59927  0.11202  3.64140  2.94850     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     32   2.64594  1.44143  2.71139  0.46836     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     33   3.04620  3.73275  0.10245  3.65294     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     34   0.12415  3.52528  2.89544  3.44100     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     35   0.12415  3.52528  2.89544  3.44100     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     36   3.59927  0.11202  3.64140  2.94850     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     37   3.23747  2.68958  3.27984  0.15643     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     38   3.23747  2.68958  3.27984  0.15643     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     39   0.12415  3.52528  2.89544  3.44100     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     40   0.12415  3.52528  2.89544  3.44100     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     41   3.04620  3.73275  0.10245  3.65294     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     42   3.59927  0.11202  3.64140  2.94850     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     43   0.12415  3.52528  2.89544  3.44100     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     44   3.23747  2.68958  3.27984  0.15643     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
+     45   0.12415  3.52528  2.89544  3.44100     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01706  4.07982        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_thirteena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:57:46 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 99869061
+STATS LOCAL MSV       -7.4759  0.72777
+STATS LOCAL VITERBI   -8.1308  0.72777
+STATS LOCAL FORWARD   -3.5939  0.72777
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29537  1.19288  1.50367  1.60672
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.53331  3.02441  0.20344  2.88069     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_thirteenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:57:54 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3873050328
+STATS LOCAL MSV       -7.5297  0.72801
+STATS LOCAL VITERBI   -8.2100  0.72801
+STATS LOCAL FORWARD   -3.3773  0.72801
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29291  1.29179  1.49882  1.48124
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_thirteenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:58:02 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2768605859
+STATS LOCAL MSV       -8.0306  0.72026
+STATS LOCAL VITERBI   -7.8201  0.72026
+STATS LOCAL FORWARD   -4.1363  0.72026
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28277  1.26352  1.52493  1.50310
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   0.15719  3.27118  2.73043  3.16274     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_thirteene_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:58:15 2012
+NSEQ  4
+EFFN  3.332031
+CKSUM 3888805481
+STATS LOCAL MSV       -8.0259  0.71933
+STATS LOCAL VITERBI   -7.5825  0.71933
+STATS LOCAL FORWARD   -3.7267  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.12169  1.25795  1.51072  1.77619
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  0.00000        *
+      1   3.43655  0.12980  3.48587  2.83150      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      2   0.14150  3.38325  2.80387  3.28520      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      3   0.14150  3.38325  2.80387  3.28520      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      4   3.43655  0.12980  3.48587  2.83150      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      5   2.94961  3.59079  0.11683  3.49577      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      6   0.14150  3.38325  2.80387  3.28520      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      7   3.43655  0.12980  3.48587  2.83150      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      8   3.43655  0.12980  3.48587  2.83150      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+      9   3.09163  2.59706  3.13967  0.17819      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     10   3.43655  0.12980  3.48587  2.83150     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     11   0.14150  3.38325  2.80387  3.28520     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     12   2.94961  3.59079  0.11683  3.49577     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     13   0.14150  3.38325  2.80387  3.28520     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     14   2.94961  3.59079  0.11683  3.49577     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     15   3.43655  0.12980  3.48587  2.83150     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     16   0.14150  3.38325  2.80387  3.28520     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     17   2.94961  3.59079  0.11683  3.49577     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     18   2.94961  3.59079  0.11683  3.49577     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     19   3.43655  0.12980  3.48587  2.83150     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     20   2.94961  3.59079  0.11683  3.49577     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     21   0.14150  3.38325  2.80387  3.28520     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     22   2.94961  3.59079  0.11683  3.49577     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     23   0.14150  3.38325  2.80387  3.28520     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     24   3.43655  0.12980  3.48587  2.83150     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     25   3.09163  2.59706  3.13967  0.17819     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     26   0.14150  3.38325  2.80387  3.28520     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     27   3.43655  0.12980  3.48587  2.83150     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     28   3.43655  0.12980  3.48587  2.83150     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     29   3.43655  0.12980  3.48587  2.83150     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     30   0.40370  2.75421  1.63104  2.62041     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     31   3.43655  0.12980  3.48587  2.83150     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     32   3.09163  2.59706  3.13967  0.17819     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     33   2.94961  3.59079  0.11683  3.49577     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     34   0.14150  3.38325  2.80387  3.28520     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     35   0.14150  3.38325  2.80387  3.28520     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     36   2.59252  1.55117  2.65827  0.44146     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     37   3.09163  2.59706  3.13967  0.17819     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     38   3.09163  2.59706  3.13967  0.17819     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     39   0.14150  3.38325  2.80387  3.28520     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     40   0.14150  3.38325  2.80387  3.28520     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     41   2.94961  3.59079  0.11683  3.49577     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     42   3.43655  0.12980  3.48587  2.83150     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     43   0.14150  3.38325  2.80387  3.28520     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     44   3.09163  2.59706  3.13967  0.17819     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
+     45   0.14150  3.38325  2.80387  3.28520     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01858  3.99490        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_thirteenf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:58:22 2012
+NSEQ  30
+EFFN  3.314209
+CKSUM 3930340295
+STATS LOCAL MSV       -8.2137  0.71933
+STATS LOCAL VITERBI   -7.6701  0.71933
+STATS LOCAL FORWARD   -4.2107  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21644  1.32636  1.53322  1.50310
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  0.00000        *
+      1   0.14225  3.37755  2.80016  3.27895      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+      2   3.08587  2.59340  3.13413  0.17912      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+      3   3.42998  0.13058  3.47957  2.82672      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+      4   3.42998  0.13058  3.47957  2.82672      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+      5   2.94563  3.58500  0.11746  3.48938      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+      6   0.14225  3.37755  2.80016  3.27895      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+      7   3.42998  0.13058  3.47957  2.82672      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+      8   3.42998  0.13058  3.47957  2.82672      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+      9   3.08587  2.59340  3.13413  0.17912      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     10   3.42998  0.13058  3.47957  2.82672     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     11   0.14225  3.37755  2.80016  3.27895     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     12   2.94563  3.58500  0.11746  3.48938     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     13   0.14225  3.37755  2.80016  3.27895     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     14   3.08587  2.59340  3.13413  0.17912     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     15   3.42998  0.13058  3.47957  2.82672     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     16   2.94563  3.58500  0.11746  3.48938     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     17   2.66390  2.61000  0.21952  2.92094     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     18   0.14225  3.37755  2.80016  3.27895     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     19   3.42998  0.13058  3.47957  2.82672     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     20   2.94563  3.58500  0.11746  3.48938     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     21   0.14225  3.37755  2.80016  3.27895     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     22   2.94563  3.58500  0.11746  3.48938     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     23   0.14225  3.37755  2.80016  3.27895     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     24   3.08587  2.59340  3.13413  0.17912     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     25   3.08587  2.59340  3.13413  0.17912     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     26   0.14225  3.37755  2.80016  3.27895     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     27   3.42998  0.13058  3.47957  2.82672     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     28   3.07458  0.19377  2.84308  2.63525     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     29   3.42998  0.13058  3.47957  2.82672     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     30   2.94563  3.58500  0.11746  3.48938     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     31   3.42998  0.13058  3.47957  2.82672     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     32   3.08587  2.59340  3.13413  0.17912     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     33   2.94563  3.58500  0.11746  3.48938     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     34   0.14225  3.37755  2.80016  3.27895     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     35   0.14225  3.37755  2.80016  3.27895     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     36   3.08587  2.59340  3.13413  0.17912     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     37   3.08587  2.59340  3.13413  0.17912     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     38   3.08587  2.59340  3.13413  0.17912     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     39   0.14225  3.37755  2.80016  3.27895     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     40   0.14225  3.37755  2.80016  3.27895     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     41   2.94563  3.58500  0.11746  3.48938     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     42   3.42998  0.13058  3.47957  2.82672     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     43   0.14225  3.37755  2.80016  3.27895     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     44   3.08587  2.59340  3.13413  0.17912     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
+     45   0.14225  3.37755  2.80016  3.27895     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01864  3.99161        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_thirtyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:37:15 2012
+NSEQ  4
+EFFN  3.660156
+CKSUM 172308360
+STATS LOCAL MSV       -7.5788  0.71932
+STATS LOCAL VITERBI   -7.7425  0.71932
+STATS LOCAL FORWARD   -4.2739  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28564  1.28833  1.51910  1.47453
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  0.00000        *
+      1   3.19300  2.66139  3.23711  0.16273      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+      2   3.19300  2.66139  3.23711  0.16273      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+      3   3.19300  2.66139  3.23711  0.16273      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+      4   2.46500  0.94717  2.53631  0.80297      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+      5   3.01755  3.69041  0.10652  3.60597      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+      6   0.12911  3.48247  2.86794  3.39398      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+      7   3.55045  0.11705  3.59478  2.91367      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+      8   3.55045  0.11705  3.59478  2.91367      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+      9   3.19300  2.66139  3.23711  0.16273      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     10   3.01755  3.69041  0.10652  3.60597     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     11   0.12911  3.48247  2.86794  3.39398     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     12   0.12911  3.48247  2.86794  3.39398     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     13   3.55045  0.11705  3.59478  2.91367     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     14   3.19300  2.66139  3.23711  0.16273     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     15   3.55045  0.11705  3.59478  2.91367     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     16   0.12911  3.48247  2.86794  3.39398     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     17   3.01755  3.69041  0.10652  3.60597     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     18   0.96244  2.18570  2.20249  0.92858     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     19   3.55045  0.11705  3.59478  2.91367     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     20   3.01755  3.69041  0.10652  3.60597     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     21   0.96244  2.18570  2.20249  0.92858     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     22   3.01755  3.69041  0.10652  3.60597     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     23   0.12911  3.48247  2.86794  3.39398     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     24   3.01755  3.69041  0.10652  3.60597     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     25   3.55045  0.11705  3.59478  2.91367     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     26   0.12911  3.48247  2.86794  3.39398     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     27   3.55045  0.11705  3.59478  2.91367     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     28   3.55045  0.11705  3.59478  2.91367     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     29   3.55045  0.11705  3.59478  2.91367     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     30   3.01755  3.69041  0.10652  3.60597     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     31   3.55045  0.11705  3.59478  2.91367     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     32   3.19300  2.66139  3.23711  0.16273     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     33   3.01755  3.69041  0.10652  3.60597     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     34   0.12911  3.48247  2.86794  3.39398     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     35   0.12911  3.48247  2.86794  3.39398     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     36   3.55045  0.11705  3.59478  2.91367     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     37   3.19300  2.66139  3.23711  0.16273     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     38   3.19300  2.66139  3.23711  0.16273     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     39   0.12911  3.48247  2.86794  3.39398     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     40   0.12911  3.48247  2.86794  3.39398     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     41   3.01755  3.69041  0.10652  3.60597     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     42   3.55045  0.11705  3.59478  2.91367     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     43   0.12911  3.48247  2.86794  3.39398     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     44   3.19300  2.66139  3.23711  0.16273     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
+     45   0.12911  3.48247  2.86794  3.39398     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01751  4.05355        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_thirtyfivea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:36:29 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2251262723
+STATS LOCAL MSV       -7.6478  0.72857
+STATS LOCAL VITERBI   -8.3386  0.72857
+STATS LOCAL FORWARD   -3.4900  0.72857
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22063  1.28733  1.53896  1.54017
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.92825  2.28391  0.95698  2.13014     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_thirtyfiveb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:36:36 2012
+NSEQ  4
+EFFN  3.324219
+CKSUM 223359380
+STATS LOCAL MSV       -8.2434  0.71932
+STATS LOCAL VITERBI   -7.8397  0.71932
+STATS LOCAL FORWARD   -4.0517  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.15527  1.22784  1.60527  1.65408
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  0.00000        *
+      1   1.57609  0.55050  2.35295  2.10809      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      2   3.08911  2.59546  3.13724  0.17860      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      3   3.43368  0.13014  3.48311  2.82941      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      4   3.43368  0.13014  3.48311  2.82941      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      5   2.94787  3.58826  0.11710  3.49298      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      6   0.14183  3.38076  2.80224  3.28247      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      7   3.43368  0.13014  3.48311  2.82941      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      8   3.43368  0.13014  3.48311  2.82941      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      9   3.08911  2.59546  3.13724  0.17860      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     10   2.94787  3.58826  0.11710  3.49298     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     11   0.14183  3.38076  2.80224  3.28247     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     12   2.94787  3.58826  0.11710  3.49298     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     13   0.14183  3.38076  2.80224  3.28247     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     14   3.08911  2.59546  3.13724  0.17860     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     15   3.43368  0.13014  3.48311  2.82941     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     16   0.14183  3.38076  2.80224  3.28247     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     17   2.94787  3.58826  0.11710  3.49298     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     18   0.14183  3.38076  2.80224  3.28247     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     19   3.43368  0.13014  3.48311  2.82941     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     20   2.94787  3.58826  0.11710  3.49298     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     21   0.14183  3.38076  2.80224  3.28247     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     22   2.94787  3.58826  0.11710  3.49298     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     23   0.14183  3.38076  2.80224  3.28247     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     24   3.43368  0.13014  3.48311  2.82941     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     25   0.14183  3.38076  2.80224  3.28247     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     26   0.14183  3.38076  2.80224  3.28247     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     27   3.43368  0.13014  3.48311  2.82941     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     28   3.43368  0.13014  3.48311  2.82941     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     29   3.43368  0.13014  3.48311  2.82941     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     30   3.43368  0.13014  3.48311  2.82941     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     31   3.43368  0.13014  3.48311  2.82941     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     32   3.08911  2.59546  3.13724  0.17860     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     33   2.94787  3.58826  0.11710  3.49298     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     34   0.14183  3.38076  2.80224  3.28247     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     35   0.14183  3.38076  2.80224  3.28247     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     36   3.08911  2.59546  3.13724  0.17860     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     37   3.08911  2.59546  3.13724  0.17860     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     38   3.08911  2.59546  3.13724  0.17860     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     39   0.14183  3.38076  2.80224  3.28247     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     40   0.14183  3.38076  2.80224  3.28247     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     41   2.94787  3.58826  0.11710  3.49298     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     42   3.43368  0.13014  3.48311  2.82941     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     43   0.14183  3.38076  2.80224  3.28247     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     44   3.08911  2.59546  3.13724  0.17860     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     45   0.14183  3.38076  2.80224  3.28247     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01861  3.99346        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_thirtyfivec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:36:40 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 929202663
+STATS LOCAL MSV       -8.0030  0.72088
+STATS LOCAL VITERBI   -7.9152  0.72088
+STATS LOCAL FORWARD   -4.0145  0.72088
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27679  1.32055  1.55992  1.41088
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.10082  2.21882  0.69930  1.30206     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   3.30705  0.14631  3.36166  2.73626     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_thirtyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:02:10 2012
+NSEQ  51
+EFFN  4.622498
+CKSUM 1752002484
+STATS LOCAL MSV       -6.8011  0.71932
+STATS LOCAL VITERBI   -7.5797  0.71932
+STATS LOCAL FORWARD   -4.2983  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.19181  1.51829  1.65331  1.25236
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  0.00000        *
+      1   0.19872  3.21993  2.80686  2.52735      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+      2   0.10412  3.71958  3.02068  3.65469      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+      3   0.52708  2.23372  2.35113  1.57367      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+      4   3.34764  0.19756  3.40023  2.20060      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+      5   2.62740  0.91749  2.69659  0.77484      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+      6   0.10412  3.71958  3.02068  3.65469      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+      7   3.81741  0.09236  3.84929  3.10236      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+      8   3.81741  0.09236  3.84929  3.10236      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+      9   3.44540  2.82224  3.47956  0.13032      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     10   3.17260  3.92002  0.08641  3.86101     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     11   0.10412  3.71958  3.02068  3.65469     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     12   1.58081  3.03038  0.36961  2.90245     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     13   3.44540  2.82224  3.47956  0.13032     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     14   3.25099  2.29289  3.29505  0.19453     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     15   1.37291  2.90286  0.46354  2.76925     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     16   1.81501  0.76028  1.42571  2.04569     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     17   2.95426  3.45935  0.15725  2.78152     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     18   3.44540  2.82224  3.47956  0.13032     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     19   0.13688  3.59251  2.64970  3.51592     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     20   3.44540  2.82224  3.47956  0.13032     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     21   3.17260  3.92002  0.08641  3.86101     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     22   0.10412  3.71958  3.02068  3.65469     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     23   3.11442  1.99982  3.16489  0.25101     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     24   3.26990  2.33740  3.31303  0.18753     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     25   0.10412  3.71958  3.02068  3.65469     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     26   3.81741  0.09236  3.84929  3.10236     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     27   3.81741  0.09236  3.84929  3.10236     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     28   3.44540  2.82224  3.47956  0.13032     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     29   3.17260  3.92002  0.08641  3.86101     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     30   3.81741  0.09236  3.84929  3.10236     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     31   3.03541  1.84690  3.08928  0.28944     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     32   3.17260  3.92002  0.08641  3.86101     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     33   0.10412  3.71958  3.02068  3.65469     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     34   0.10412  3.71958  3.02068  3.65469     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     35   3.81741  0.09236  3.84929  3.10236     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     36   3.44540  2.82224  3.47956  0.13032     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     37   3.44540  2.82224  3.47956  0.13032     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     38   0.10412  3.71958  3.02068  3.65469     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     39   0.10412  3.71958  3.02068  3.65469     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     40   3.17260  3.92002  0.08641  3.86101     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     41   3.81741  0.09236  3.84929  3.10236     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     42   0.10412  3.71958  3.02068  3.65469     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     43   3.44540  2.82224  3.47956  0.13032     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     44   0.10412  3.71958  3.02068  3.65469     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
+     45   3.44540  2.82224  3.47956  0.13032     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01499  4.20804        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_thirtyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:37:02 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2809097426
+STATS LOCAL MSV       -8.0435  0.72039
+STATS LOCAL VITERBI   -7.7252  0.72039
+STATS LOCAL FORWARD   -4.0959  0.72039
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40570  1.19945  1.38115  1.59871
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.43088  1.34923  2.50068  0.56112      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.86982  3.47591  0.13017  3.36931     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_thirtysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:36:51 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2235696670
+STATS LOCAL MSV       -7.6354  0.72842
+STATS LOCAL VITERBI   -8.1785  0.72842
+STATS LOCAL FORWARD   -3.4467  0.72842
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23700  1.38378  1.42713  1.51815
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.15554  1.00938  2.23102  0.88601     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_thirtythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Wed Feb 29 11:36:15 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 958365841
+STATS LOCAL MSV       -7.9809  0.72073
+STATS LOCAL VITERBI   -7.8947  0.72073
+STATS LOCAL FORWARD   -4.3469  0.72073
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33797  1.26045  1.48365  1.48154
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.10082  2.21882  0.69930  1.30206      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_thirtytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:02:19 2012
+NSEQ  21
+EFFN  3.776001
+CKSUM 3781066606
+STATS LOCAL MSV       -7.4789  0.71932
+STATS LOCAL VITERBI   -7.7461  0.71932
+STATS LOCAL FORWARD   -4.0252  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21030  1.50966  1.52784  1.33217
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  0.00000        *
+      1   3.04959  0.25511  3.11054  2.01578      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+      2   3.03936  3.72263  0.10341  3.64171      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+      3   3.22677  2.68279  3.26956  0.15792      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+      4   3.03936  3.72263  0.10341  3.64171      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+      5   3.22677  2.68279  3.26956  0.15792      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+      6   0.12532  3.51501  2.88885  3.42972      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+      7   3.22677  2.68279  3.26956  0.15792      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+      8   3.58758  0.11320  3.63024  2.94018      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+      9   3.22677  2.68279  3.26956  0.15792      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     10   3.03936  3.72263  0.10341  3.64171     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     11   0.12532  3.51501  2.88885  3.42972     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     12   0.12532  3.51501  2.88885  3.42972     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     13   0.26222  2.34874  2.60935  2.78736     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.13370  4.09034  2.22184  1.46634  0.26236  1.09861  0.40547
+     14   3.05768  2.57545  3.10701  0.18374     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03754  3.99418  3.99418  1.46634  0.26236  0.26904  1.44439
+     15   3.58758  0.11320  3.63024  2.94018     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     16   0.12532  3.51501  2.88885  3.42972     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     17   0.12532  3.51501  2.88885  3.42972     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     18   3.03936  3.72263  0.10341  3.64171     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     19   3.22677  2.68279  3.26956  0.15792     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     20   3.03936  3.72263  0.10341  3.64171     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     21   3.22677  2.68279  3.26956  0.15792     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     22   3.03936  3.72263  0.10341  3.64171     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     23   0.19599  3.15137  2.72843  2.66121     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     24   2.05503  1.13744  1.58476  1.06052     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     25   2.03102  2.66968  0.38075  2.15267     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     26   0.12532  3.51501  2.88885  3.42972     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     27   3.58758  0.11320  3.63024  2.94018     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     28   3.58758  0.11320  3.63024  2.94018     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     29   3.58758  0.11320  3.63024  2.94018     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     30   3.58758  0.11320  3.63024  2.94018     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     31   3.58758  0.11320  3.63024  2.94018     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     32   3.22677  2.68279  3.26956  0.15792     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     33   3.03936  3.72263  0.10341  3.64171     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     34   0.12532  3.51501  2.88885  3.42972     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     35   0.12532  3.51501  2.88885  3.42972     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     36   3.22677  2.68279  3.26956  0.15792     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     37   3.22677  2.68279  3.26956  0.15792     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     38   3.22677  2.68279  3.26956  0.15792     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     39   0.12532  3.51501  2.88885  3.42972     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     40   0.12532  3.51501  2.88885  3.42972     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     41   3.03936  3.72263  0.10341  3.64171     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     42   3.58758  0.11320  3.63024  2.94018     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     43   0.12532  3.51501  2.88885  3.42972     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     44   3.22677  2.68279  3.26956  0.15792     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
+     45   0.12532  3.51501  2.88885  3.42972     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01716  4.07346        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:49:43 2012
+NSEQ  10
+EFFN  3.334961
+CKSUM 2758523613
+STATS LOCAL MSV       -8.2143  0.71933
+STATS LOCAL VITERBI   -7.5430  0.71933
+STATS LOCAL FORWARD   -3.9363  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23872  1.25886  1.59600  1.49807
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  0.00000        *
+      1   3.09257  2.59766  3.14057  0.17804      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      2   3.43763  0.12967  3.48690  2.83229      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      3   3.09257  2.59766  3.14057  0.17804      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      4   3.43763  0.12967  3.48690  2.83229      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      5   2.95026  3.59174  0.11672  3.49682      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      6   0.14138  3.38419  2.80447  3.28622      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      7   3.43763  0.12967  3.48690  2.83229      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      8   3.43763  0.12967  3.48690  2.83229      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+      9   3.09257  2.59766  3.14057  0.17804      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     10   3.43763  0.12967  3.48690  2.83229     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     11   0.14138  3.38419  2.80447  3.28622     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     12   2.95026  3.59174  0.11672  3.49682     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     13   0.14138  3.38419  2.80447  3.28622     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     14   3.09257  2.59766  3.14057  0.17804     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     15   3.43763  0.12967  3.48690  2.83229     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     16   0.14138  3.38419  2.80447  3.28622     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     17   2.95026  3.59174  0.11672  3.49682     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     18   0.46629  2.68077  1.48912  2.54345     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     19   3.43763  0.12967  3.48690  2.83229     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     20   0.14138  3.38419  2.80447  3.28622     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     21   0.14138  3.38419  2.80447  3.28622     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     22   2.95026  3.59174  0.11672  3.49682     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     23   2.95026  3.59174  0.11672  3.49682     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     24   3.43763  0.12967  3.48690  2.83229     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     25   3.09257  2.59766  3.14057  0.17804     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     26   0.14138  3.38419  2.80447  3.28622     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     27   3.43763  0.12967  3.48690  2.83229     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     28   3.43763  0.12967  3.48690  2.83229     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     29   3.43763  0.12967  3.48690  2.83229     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     30   2.95026  3.59174  0.11672  3.49682     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     31   3.43763  0.12967  3.48690  2.83229     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     32   3.09257  2.59766  3.14057  0.17804     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     33   2.95026  3.59174  0.11672  3.49682     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     34   0.14138  3.38419  2.80447  3.28622     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     35   0.14138  3.38419  2.80447  3.28622     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     36   3.09257  2.59766  3.14057  0.17804     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     37   3.09257  2.59766  3.14057  0.17804     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     38   3.09257  2.59766  3.14057  0.17804     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     39   0.14138  3.38419  2.80447  3.28622     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     40   0.14138  3.38419  2.80447  3.28622     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     41   2.95026  3.59174  0.11672  3.49682     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     42   3.43763  0.12967  3.48690  2.83229     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     43   0.14138  3.38419  2.80447  3.28622     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     44   3.09257  2.59766  3.14057  0.17804     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
+     45   0.14138  3.38419  2.80447  3.28622     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01857  3.99544        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twelve_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:57:34 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 869730097
+STATS LOCAL MSV       -8.0534  0.72127
+STATS LOCAL VITERBI   -7.7876  0.72127
+STATS LOCAL FORWARD   -3.9200  0.72127
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.20477  1.36989  1.62908  1.38632
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   1.33622  2.58417  0.55423  2.43967     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.42752  1.34012  2.49742  0.56628     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.86982  3.47591  0.13017  3.36931     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twenty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:59:47 2012
+NSEQ  10
+EFFN  3.637695
+CKSUM 2656717971
+STATS LOCAL MSV       -7.6590  0.71931
+STATS LOCAL VITERBI   -7.6396  0.71931
+STATS LOCAL FORWARD   -4.2587  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26274  1.30948  1.45746  1.54022
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  0.00000        *
+      1   2.56791  0.56820  2.63886  1.25414      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+      2   2.21210  0.29506  2.81793  2.44976      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+      3   3.18633  2.65716  3.23071  0.16370      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+      4   3.01320  3.68399  0.10715  3.59886      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+      5   0.12988  3.47601  2.86379  3.38690      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+      6   0.12988  3.47601  2.86379  3.38690      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+      7   2.76060  0.38841  2.82828  1.61194      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+      8   3.54307  0.11783  3.58773  2.90838      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+      9   3.18633  2.65716  3.23071  0.16370      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     10   3.54307  0.11783  3.58773  2.90838     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     11   0.12988  3.47601  2.86379  3.38690     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     12   3.01320  3.68399  0.10715  3.59886     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     13   0.12988  3.47601  2.86379  3.38690     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     14   3.18633  2.65716  3.23071  0.16370     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     15   3.54307  0.11783  3.58773  2.90838     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     16   0.12988  3.47601  2.86379  3.38690     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     17   3.01320  3.68399  0.10715  3.59886     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     18   3.01320  3.68399  0.10715  3.59886     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     19   3.54307  0.11783  3.58773  2.90838     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     20   3.01320  3.68399  0.10715  3.59886     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     21   1.76831  2.95823  0.33081  2.82808     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     22   3.01320  3.68399  0.10715  3.59886     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     23   0.23339  3.13290  2.15597  3.02062     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     24   3.18633  2.65716  3.23071  0.16370     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     25   3.54307  0.11783  3.58773  2.90838     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     26   0.12988  3.47601  2.86379  3.38690     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     27   3.54307  0.11783  3.58773  2.90838     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     28   3.54307  0.11783  3.58773  2.90838     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     29   3.54307  0.11783  3.58773  2.90838     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     30   3.01320  3.68399  0.10715  3.59886     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     31   3.54307  0.11783  3.58773  2.90838     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     32   3.18633  2.65716  3.23071  0.16370     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     33   3.01320  3.68399  0.10715  3.59886     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     34   0.12988  3.47601  2.86379  3.38690     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     35   0.12988  3.47601  2.86379  3.38690     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     36   3.18633  2.65716  3.23071  0.16370     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     37   3.18633  2.65716  3.23071  0.16370     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     38   3.18633  2.65716  3.23071  0.16370     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     39   0.12988  3.47601  2.86379  3.38690     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     40   0.12988  3.47601  2.86379  3.38690     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     41   3.01320  3.68399  0.10715  3.59886     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     42   3.54307  0.11783  3.58773  2.90838     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     43   0.12988  3.47601  2.86379  3.38690     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     44   3.18633  2.65716  3.23071  0.16370     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
+     45   0.12988  3.47601  2.86379  3.38690     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01758  4.04964        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twentyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:01:50 2012
+NSEQ  5
+EFFN  3.168945
+CKSUM 1327797524
+STATS LOCAL MSV       -8.0678  0.71932
+STATS LOCAL VITERBI   -7.6682  0.71932
+STATS LOCAL FORWARD   -3.5455  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.41226  1.10325  1.45485  1.65452
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  0.00000        *
+      1   2.91196  3.53626  0.12295  3.43565      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      2   3.03791  2.56284  3.08799  0.18707      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      3   3.37482  0.13738  3.42671  2.78637      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      4   2.91196  3.53626  0.12295  3.43565      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      5   2.91196  3.53626  0.12295  3.43565      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      6   0.14875  3.32976  2.76899  3.22669      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      7   3.37482  0.13738  3.42671  2.78637      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      8   3.37482  0.13738  3.42671  2.78637      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      9   3.03791  2.56284  3.08799  0.18707      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     10   3.37482  0.13738  3.42671  2.78637     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     11   2.91196  3.53626  0.12295  3.43565     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     12   2.91196  3.53626  0.12295  3.43565     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     13   3.37482  0.13738  3.42671  2.78637     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     14   3.03791  2.56284  3.08799  0.18707     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     15   3.37482  0.13738  3.42671  2.78637     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     16   0.14875  3.32976  2.76899  3.22669     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     17   2.91196  3.53626  0.12295  3.43565     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     18   3.37482  0.13738  3.42671  2.78637     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     19   3.37482  0.13738  3.42671  2.78637     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     20   3.03791  2.56284  3.08799  0.18707     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     21   0.14875  3.32976  2.76899  3.22669     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     22   2.91196  3.53626  0.12295  3.43565     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     23   0.14875  3.32976  2.76899  3.22669     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     24   3.03791  2.56284  3.08799  0.18707     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     25   3.37482  0.13738  3.42671  2.78637     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     26   0.14875  3.32976  2.76899  3.22669     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     27   3.37482  0.13738  3.42671  2.78637     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     28   3.37482  0.13738  3.42671  2.78637     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     29   3.37482  0.13738  3.42671  2.78637     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     30   2.91196  3.53626  0.12295  3.43565     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     31   3.37482  0.13738  3.42671  2.78637     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     32   3.37482  0.13738  3.42671  2.78637     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     33   2.91196  3.53626  0.12295  3.43565     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     34   0.14875  3.32976  2.76899  3.22669     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     35   0.14875  3.32976  2.76899  3.22669     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     36   3.37482  0.13738  3.42671  2.78637     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     37   3.03791  2.56284  3.08799  0.18707     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     38   3.03791  2.56284  3.08799  0.18707     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     39   0.14875  3.32976  2.76899  3.22669     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     40   0.14875  3.32976  2.76899  3.22669     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     41   2.91196  3.53626  0.12295  3.43565     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     42   3.37482  0.13738  3.42671  2.78637     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     43   0.14875  3.32976  2.76899  3.22669     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     44   3.03791  2.56284  3.08799  0.18707     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     45   0.14875  3.32976  2.76899  3.22669     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01916  3.96442        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twentyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:01:27 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 493454044
+STATS LOCAL MSV       -8.0345  0.72034
+STATS LOCAL VITERBI   -7.7520  0.72034
+STATS LOCAL FORWARD   -3.8814  0.72034
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22178  1.46087  1.44289  1.43963
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twentyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:01:19 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 4113701339
+STATS LOCAL MSV       -7.8908  0.72186
+STATS LOCAL VITERBI   -7.6156  0.72186
+STATS LOCAL FORWARD   -3.7494  0.72186
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26577  1.40539  1.50943  1.37963
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.42422  1.33104  2.49423  0.57148     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.09338  1.42206  0.67619  2.06387     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.09338  1.42206  0.67619  2.06387     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twentynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:01:59 2012
+NSEQ  4
+EFFN  3.285156
+CKSUM 405185964
+STATS LOCAL MSV       -8.2383  0.71933
+STATS LOCAL VITERBI   -7.6565  0.71933
+STATS LOCAL FORWARD   -4.0319  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11058  1.38892  1.69564  1.43631
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  0.00000        *
+      1   0.14350  3.36817  2.79406  3.26870      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      2   3.41917  0.13188  3.46922  2.81884      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      3   3.07642  2.58739  3.12504  0.18065      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      4   0.14350  3.36817  2.79406  3.26870      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      5   2.93908  3.57547  0.11851  3.47887      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      6   0.14350  3.36817  2.79406  3.26870      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      7   3.41917  0.13188  3.46922  2.81884      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      8   3.41917  0.13188  3.46922  2.81884      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      9   3.07642  2.58739  3.12504  0.18065      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     10   3.41917  0.13188  3.46922  2.81884     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     11   0.14350  3.36817  2.79406  3.26870     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     12   0.14350  3.36817  2.79406  3.26870     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     13   3.07642  2.58739  3.12504  0.18065     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     14   3.07642  2.58739  3.12504  0.18065     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     15   3.07642  2.58739  3.12504  0.18065     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     16   2.93908  3.57547  0.11851  3.47887     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     17   0.14350  3.36817  2.79406  3.26870     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     18   2.93908  3.57547  0.11851  3.47887     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     19   3.41917  0.13188  3.46922  2.81884     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     20   0.14350  3.36817  2.79406  3.26870     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     21   0.14350  3.36817  2.79406  3.26870     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     22   2.93908  3.57547  0.11851  3.47887     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     23   0.14350  3.36817  2.79406  3.26870     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     24   3.07642  2.58739  3.12504  0.18065     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     25   3.07642  2.58739  3.12504  0.18065     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     26   0.14350  3.36817  2.79406  3.26870     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     27   3.41917  0.13188  3.46922  2.81884     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     28   3.41917  0.13188  3.46922  2.81884     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     29   3.41917  0.13188  3.46922  2.81884     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     30   2.93908  3.57547  0.11851  3.47887     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     31   3.41917  0.13188  3.46922  2.81884     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     32   3.07642  2.58739  3.12504  0.18065     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     33   2.93908  3.57547  0.11851  3.47887     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     34   0.14350  3.36817  2.79406  3.26870     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     35   0.14350  3.36817  2.79406  3.26870     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     36   3.41917  0.13188  3.46922  2.81884     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     37   3.07642  2.58739  3.12504  0.18065     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     38   3.07642  2.58739  3.12504  0.18065     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     39   0.14350  3.36817  2.79406  3.26870     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     40   0.14350  3.36817  2.79406  3.26870     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     41   2.93908  3.57547  0.11851  3.47887     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     42   3.41917  0.13188  3.46922  2.81884     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     43   0.14350  3.36817  2.79406  3.26870     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     44   3.07642  2.58739  3.12504  0.18065     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     45   0.14350  3.36817  2.79406  3.26870     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01874  3.98623        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twentyonea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:59:57 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1175917883
+STATS LOCAL MSV       -7.9911  0.72114
+STATS LOCAL VITERBI   -7.8834  0.72114
+STATS LOCAL FORWARD   -3.9581  0.72114
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.20657  1.30856  1.59272  1.48194
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   1.32055  2.11354  2.18868  0.69287      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   0.15719  3.27118  2.73043  3.16274     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   0.15719  3.27118  2.73043  3.16274     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.43258  1.35379  2.50233  0.55855     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twentyoneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:00:03 2012
+NSEQ  7
+EFFN  3.257324
+CKSUM 2198767491
+STATS LOCAL MSV       -8.1040  0.71931
+STATS LOCAL VITERBI   -7.7630  0.71931
+STATS LOCAL FORWARD   -4.1651  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27979  1.32449  1.52710  1.43213
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  0.00000        *
+      1   3.06731  2.58158  3.11627  0.18215      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+      2   3.06731  2.58158  3.11627  0.18215      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+      3   2.93271  3.56625  0.11954  3.46869      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+      4   3.06731  2.58158  3.11627  0.18215      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+      5   2.93271  3.56625  0.11954  3.46869      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+      6   0.14472  3.35911  2.78816  3.25878      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+      7   3.40872  0.13316  3.45920  2.81121      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+      8   3.40872  0.13316  3.45920  2.81121      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+      9   3.06731  2.58158  3.11627  0.18215      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     10   2.93271  3.56625  0.11954  3.46869     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     11   0.14472  3.35911  2.78816  3.25878     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     12   0.14472  3.35911  2.78816  3.25878     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     13   3.40872  0.13316  3.45920  2.81121     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     14   3.06731  2.58158  3.11627  0.18215     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     15   3.40872  0.13316  3.45920  2.81121     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     16   0.14472  3.35911  2.78816  3.25878     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     17   2.93271  3.56625  0.11954  3.46869     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     18   0.14472  3.35911  2.78816  3.25878     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     19   3.40872  0.13316  3.45920  2.81121     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     20   2.93271  3.56625  0.11954  3.46869     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     21   3.06731  2.58158  3.11627  0.18215     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     22   2.93271  3.56625  0.11954  3.46869     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     23   0.14472  3.35911  2.78816  3.25878     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     24   3.06731  2.58158  3.11627  0.18215     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     25   3.40872  0.13316  3.45920  2.81121     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     26   0.14472  3.35911  2.78816  3.25878     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     27   3.40872  0.13316  3.45920  2.81121     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     28   3.40872  0.13316  3.45920  2.81121     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     29   3.40872  0.13316  3.45920  2.81121     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     30   2.93271  3.56625  0.11954  3.46869     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     31   3.40872  0.13316  3.45920  2.81121     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     32   3.06731  2.58158  3.11627  0.18215     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     33   2.93271  3.56625  0.11954  3.46869     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     34   0.14472  3.35911  2.78816  3.25878     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     35   0.14472  3.35911  2.78816  3.25878     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     36   3.40872  0.13316  3.45920  2.81121     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     37   3.06731  2.58158  3.11627  0.18215     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     38   3.06731  2.58158  3.11627  0.18215     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     39   0.14472  3.35911  2.78816  3.25878     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     40   0.14472  3.35911  2.78816  3.25878     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     41   2.93271  3.56625  0.11954  3.46869     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     42   3.40872  0.13316  3.45920  2.81121     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     43   0.14472  3.35911  2.78816  3.25878     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     44   3.06731  2.58158  3.11627  0.18215     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
+     45   0.14472  3.35911  2.78816  3.25878     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01884  3.98105        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twentyonec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:00:09 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3822712959
+STATS LOCAL MSV       -7.4025  0.72799
+STATS LOCAL VITERBI   -8.2146  0.72799
+STATS LOCAL FORWARD   -3.4594  0.72799
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.19201  1.29229  1.56685  1.54625
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twentyoned_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:00:15 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3101498025
+STATS LOCAL MSV       -7.4383  0.72813
+STATS LOCAL VITERBI   -8.3384  0.72813
+STATS LOCAL FORWARD   -3.5719  0.72813
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29173  1.34298  1.49938  1.42350
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.81865  0.23582  2.88868  2.35662     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twentyonee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:00:22 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1082780720
+STATS LOCAL MSV       -7.4819  0.72804
+STATS LOCAL VITERBI   -8.3452  0.72804
+STATS LOCAL FORWARD   -3.6247  0.72804
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34479  1.34306  1.43607  1.42505
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twentyonef_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:00:27 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4075013726
+STATS LOCAL MSV       -7.4346  0.72876
+STATS LOCAL VITERBI   -8.2677  0.72876
+STATS LOCAL FORWARD   -3.2579  0.72876
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.14531  1.27034  1.71538  1.50850
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.15554  1.00938  2.23102  0.88601     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twentyoneg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:00:33 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1499303294
+STATS LOCAL MSV       -7.4468  0.72832
+STATS LOCAL VITERBI   -8.1792  0.72832
+STATS LOCAL FORWARD   -3.7559  0.72832
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34665  1.28182  1.57176  1.36775
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.57915  2.25909  2.64442  0.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twentyoneh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:00:55 2012
+NSEQ  17
+EFFN  3.490479
+CKSUM 2048180296
+STATS LOCAL MSV       -7.4432  0.71933
+STATS LOCAL VITERBI   -7.7454  0.71933
+STATS LOCAL FORWARD   -4.3181  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.35818  1.20843  1.44293  1.57036
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  0.00000        *
+      1   2.86208  2.00642  2.91898  0.28184      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+      2   3.49321  0.12326  3.54008  2.87255      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+      3   3.49321  0.12326  3.54008  2.87255      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+      4   3.49321  0.12326  3.54008  2.87255      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+      5   2.24900  3.24331  0.20866  3.12836      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+      6   0.54374  2.63770  1.32553  2.49810      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+      7   3.49321  0.12326  3.54008  2.87255      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+      8   3.49321  0.12326  3.54008  2.87255      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+      9   3.14166  2.62884  3.18778  0.17036      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     10   3.49321  0.12326  3.54008  2.87255     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     11   2.98363  3.64050  0.11155  3.55071     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     12   2.98363  3.64050  0.11155  3.55071     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     13   0.13519  3.43251  2.83575  3.33917     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     14   3.14166  2.62884  3.18778  0.17036     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     15   3.04000  0.24307  3.10105  2.09603     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     16   0.13519  3.43251  2.83575  3.33917     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     17   2.98363  3.64050  0.11155  3.55071     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     18   2.98363  3.64050  0.11155  3.55071     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     19   3.03719  0.24407  3.09832  2.09172     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     20   2.98363  3.64050  0.11155  3.55071     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     21   3.14166  2.62884  3.18778  0.17036     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     22   2.98363  3.64050  0.11155  3.55071     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     23   0.13519  3.43251  2.83575  3.33917     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     24   0.13519  3.43251  2.83575  3.33917     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     25   3.14166  2.62884  3.18778  0.17036     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     26   0.13519  3.43251  2.83575  3.33917     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     27   3.49321  0.12326  3.54008  2.87255     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     28   3.49321  0.12326  3.54008  2.87255     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     29   3.49321  0.12326  3.54008  2.87255     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     30   2.98363  3.64050  0.11155  3.55071     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     31   3.49321  0.12326  3.54008  2.87255     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     32   3.14166  2.62884  3.18778  0.17036     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     33   2.98363  3.64050  0.11155  3.55071     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     34   0.13519  3.43251  2.83575  3.33917     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     35   0.13519  3.43251  2.83575  3.33917     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     36   3.49321  0.12326  3.54008  2.87255     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     37   3.14166  2.62884  3.18778  0.17036     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     38   3.14166  2.62884  3.18778  0.17036     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     39   0.13519  3.43251  2.83575  3.33917     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     40   0.13519  3.43251  2.83575  3.33917     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     41   2.98363  3.64050  0.11155  3.55071     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     42   3.49321  0.12326  3.54008  2.87255     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     43   0.13519  3.43251  2.83575  3.33917     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     44   3.14166  2.62884  3.18778  0.17036     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
+     45   0.13519  3.43251  2.83575  3.33917     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01805  4.02365        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twentyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:01:42 2012
+NSEQ  25
+EFFN  3.604126
+CKSUM 615754615
+STATS LOCAL MSV       -7.7339  0.71932
+STATS LOCAL VITERBI   -7.5405  0.71932
+STATS LOCAL FORWARD   -4.1531  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.19991  1.44050  1.62854  1.32518
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  0.00000        *
+      1   1.52004  2.24459  2.37189  0.54125      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+      2   3.00662  3.67429  0.10812  3.58812      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+      3   3.17630  2.65080  3.22106  0.16517      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+      4   0.13104  3.46628  2.85752  3.37621      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+      5   3.00662  3.67429  0.10812  3.58812      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+      6   3.00662  3.67429  0.10812  3.58812      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+      7   3.53193  0.11902  3.57709  2.90040      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+      8   3.53193  0.11902  3.57709  2.90040      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+      9   3.17630  2.65080  3.22106  0.16517      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     10   3.53193  0.11902  3.57709  2.90040     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     11   0.13104  3.46628  2.85752  3.37621     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     12   0.13104  3.46628  2.85752  3.37621     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     13   0.19070  2.81213  2.72186  3.04092     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     14   3.17630  2.65080  3.22106  0.16517     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     15   0.13104  3.46628  2.85752  3.37621     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     16   0.13104  3.46628  2.85752  3.37621     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     17   3.17630  2.65080  3.22106  0.16517     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     18   3.00662  3.67429  0.10812  3.58812     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     19   3.17630  2.65080  3.22106  0.16517     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     20   3.00662  3.67429  0.10812  3.58812     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     21   3.17630  2.65080  3.22106  0.16517     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     22   3.00662  3.67429  0.10812  3.58812     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     23   0.13104  3.46628  2.85752  3.37621     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     24   3.53193  0.11902  3.57709  2.90040     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     25   3.17630  2.65080  3.22106  0.16517     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     26   0.13104  3.46628  2.85752  3.37621     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     27   3.53193  0.11902  3.57709  2.90040     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     28   3.53193  0.11902  3.57709  2.90040     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     29   3.53193  0.11902  3.57709  2.90040     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     30   3.53193  0.11902  3.57709  2.90040     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     31   3.53193  0.11902  3.57709  2.90040     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     32   3.17630  2.65080  3.22106  0.16517     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     33   0.13104  3.46628  2.85752  3.37621     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     34   0.13104  3.46628  2.85752  3.37621     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     35   0.13104  3.46628  2.85752  3.37621     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     36   2.95192  2.13272  3.00566  0.24880     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     37   3.17630  2.65080  3.22106  0.16517     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     38   3.17630  2.65080  3.22106  0.16517     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     39   0.13104  3.46628  2.85752  3.37621     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     40   0.13104  3.46628  2.85752  3.37621     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     41   3.00662  3.67429  0.10812  3.58812     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     42   3.53193  0.11902  3.57709  2.90040     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     43   0.13104  3.46628  2.85752  3.37621     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     44   3.17630  2.65080  3.22106  0.16517     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
+     45   1.94400  2.29353  0.39444  2.50223     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01769  4.04378        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twentysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:01:34 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1148524890
+STATS LOCAL MSV       -8.0380  0.72036
+STATS LOCAL VITERBI   -7.7395  0.72036
+STATS LOCAL FORWARD   -3.7355  0.72036
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33949  1.45941  1.37656  1.37357
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twentythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:01:11 2012
+NSEQ  8
+EFFN  3.285156
+CKSUM 2607871508
+STATS LOCAL MSV       -8.2251  0.71933
+STATS LOCAL VITERBI   -7.5953  0.71933
+STATS LOCAL FORWARD   -4.0932  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16481  1.25871  1.80031  1.43234
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  0.00000        *
+      1   0.14350  3.36817  2.79406  3.26870      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      2   3.41917  0.13188  3.46922  2.81884      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      3   0.14350  3.36817  2.79406  3.26870      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      4   3.07642  2.58739  3.12504  0.18065      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      5   0.14350  3.36817  2.79406  3.26870      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      6   2.93908  3.57547  0.11851  3.47887      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      7   3.41917  0.13188  3.46922  2.81884      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      8   3.41917  0.13188  3.46922  2.81884      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+      9   3.07642  2.58739  3.12504  0.18065      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     10   3.41917  0.13188  3.46922  2.81884     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     11   0.14350  3.36817  2.79406  3.26870     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     12   0.14350  3.36817  2.79406  3.26870     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     13   3.41917  0.13188  3.46922  2.81884     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     14   3.07642  2.58739  3.12504  0.18065     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     15   3.41917  0.13188  3.46922  2.81884     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     16   0.14350  3.36817  2.79406  3.26870     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     17   3.07642  2.58739  3.12504  0.18065     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     18   2.93908  3.57547  0.11851  3.47887     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     19   3.07642  2.58739  3.12504  0.18065     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     20   2.93908  3.57547  0.11851  3.47887     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     21   0.14350  3.36817  2.79406  3.26870     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     22   2.93908  3.57547  0.11851  3.47887     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     23   0.14350  3.36817  2.79406  3.26870     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     24   3.41917  0.13188  3.46922  2.81884     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     25   3.07642  2.58739  3.12504  0.18065     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     26   0.14350  3.36817  2.79406  3.26870     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     27   3.41917  0.13188  3.46922  2.81884     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     28   3.41917  0.13188  3.46922  2.81884     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     29   3.41917  0.13188  3.46922  2.81884     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     30   3.41917  0.13188  3.46922  2.81884     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     31   3.41917  0.13188  3.46922  2.81884     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     32   3.07642  2.58739  3.12504  0.18065     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     33   2.93908  3.57547  0.11851  3.47887     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     34   0.14350  3.36817  2.79406  3.26870     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     35   0.14350  3.36817  2.79406  3.26870     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     36   3.07642  2.58739  3.12504  0.18065     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     37   3.07642  2.58739  3.12504  0.18065     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     38   3.07642  2.58739  3.12504  0.18065     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     39   0.14350  3.36817  2.79406  3.26870     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     40   0.14350  3.36817  2.79406  3.26870     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     41   2.93908  3.57547  0.11851  3.47887     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     42   3.41917  0.13188  3.46922  2.81884     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     43   0.14350  3.36817  2.79406  3.26870     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     44   3.07642  2.58739  3.12504  0.18065     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
+     45   0.14350  3.36817  2.79406  3.26870     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01874  3.98623        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_twentytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 23:01:03 2012
+NSEQ  5
+EFFN  3.559570
+CKSUM 3915778671
+STATS LOCAL MSV       -7.9350  0.71931
+STATS LOCAL VITERBI   -7.3801  0.71931
+STATS LOCAL FORWARD   -4.1967  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.08783  1.29601  1.90713  1.42327
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  0.00000        *
+      1   0.13263  3.45319  2.84909  3.36185      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+      2   1.15878  2.17074  2.22351  0.76828      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+      3   0.13263  3.45319  2.84909  3.36185      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+      4   3.51693  0.12064  3.56276  2.88963      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+      5   0.13263  3.45319  2.84909  3.36185      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+      6   0.13263  3.45319  2.84909  3.36185      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+      7   3.51693  0.12064  3.56276  2.88963      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+      8   3.51693  0.12064  3.56276  2.88963      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+      9   3.16284  2.64227  3.20813  0.16716      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     10   3.51693  0.12064  3.56276  2.88963     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     11   0.13263  3.45319  2.84909  3.36185     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     12   0.13263  3.45319  2.84909  3.36185     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     13   3.51693  0.12064  3.56276  2.88963     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     14   3.16284  2.64227  3.20813  0.16716     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     15   3.51693  0.12064  3.56276  2.88963     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     16   0.13263  3.45319  2.84909  3.36185     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     17   3.16284  2.64227  3.20813  0.16716     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     18   0.13263  3.45319  2.84909  3.36185     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     19   3.16284  2.64227  3.20813  0.16716     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     20   2.99774  3.66122  0.10943  3.57364     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     21   2.99774  3.66122  0.10943  3.57364     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     22   2.99774  3.66122  0.10943  3.57364     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     23   0.13263  3.45319  2.84909  3.36185     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     24   2.48941  1.18066  2.55916  0.62999     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     25   3.16284  2.64227  3.20813  0.16716     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     26   0.13263  3.45319  2.84909  3.36185     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     27   3.51693  0.12064  3.56276  2.88963     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     28   3.51693  0.12064  3.56276  2.88963     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     29   3.51693  0.12064  3.56276  2.88963     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     30   3.51693  0.12064  3.56276  2.88963     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     31   3.51693  0.12064  3.56276  2.88963     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     32   3.16284  2.64227  3.20813  0.16716     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     33   2.99774  3.66122  0.10943  3.57364     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     34   0.13263  3.45319  2.84909  3.36185     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     35   0.13263  3.45319  2.84909  3.36185     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     36   3.16284  2.64227  3.20813  0.16716     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     37   3.16284  2.64227  3.20813  0.16716     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     38   3.16284  2.64227  3.20813  0.16716     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     39   0.13263  3.45319  2.84909  3.36185     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     40   0.13263  3.45319  2.84909  3.36185     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     41   2.99774  3.66122  0.10943  3.57364     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     42   3.51693  0.12064  3.56276  2.88963     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     43   0.13263  3.45319  2.84909  3.36185     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     44   3.16284  2.64227  3.20813  0.16716     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
+     45   0.13263  3.45319  2.84909  3.36185     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01783  4.03593        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Metazoa_4_LSU_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Feb 27 22:49:34 2012
+NSEQ  24
+EFFN  4.110352
+CKSUM 3861060913
+STATS LOCAL MSV       -7.2757  0.71932
+STATS LOCAL VITERBI   -7.5425  0.71932
+STATS LOCAL FORWARD   -4.1954  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.24577  1.38621  1.49131  1.43893
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  0.00000        *
+      1   2.52986  2.30029  2.91720  0.26655      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+      2   2.55091  1.00702  2.62071  0.72581      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+      3   2.84685  1.70365  2.90630  0.34916      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+      4   3.31876  2.74119  3.35792  0.14560      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+      5   3.09695  3.80803  0.09565  3.73654      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+      6   0.11574  3.60237  2.94493  3.52575      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+      7   3.68657  0.10364  3.72466  3.01034      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+      8   3.68657  0.10364  3.72466  3.01034      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+      9   3.31876  2.74119  3.35792  0.14560      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     10   2.20818  0.75168  1.22058  2.09179     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     11   0.11574  3.60237  2.94493  3.52575     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     12   3.09695  3.80803  0.09565  3.73654     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     13   0.11574  3.60237  2.94493  3.52575     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     14   2.24775  2.24807  1.22321  0.70426     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     15   3.68657  0.10364  3.72466  3.01034     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     16   0.11574  3.60237  2.94493  3.52575     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     17   3.09695  3.80803  0.09565  3.73654     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     18   3.09695  3.80803  0.09565  3.73654     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     19   3.68657  0.10364  3.72466  3.01034     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     20   0.11574  3.60237  2.94493  3.52575     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     21   0.11574  3.60237  2.94493  3.52575     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     22   3.09695  3.80803  0.09565  3.73654     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     23   2.00849  3.22105  0.24712  3.10445     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     24   3.03663  0.27971  3.09824  1.89132     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     25   3.31876  2.74119  3.35792  0.14560     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     26   0.11574  3.60237  2.94493  3.52575     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     27   3.68657  0.10364  3.72466  3.01034     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     28   3.68657  0.10364  3.72466  3.01034     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     29   3.68657  0.10364  3.72466  3.01034     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     30   3.09695  3.80803  0.09565  3.73654     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     31   3.68657  0.10364  3.72466  3.01034     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     32   3.31876  2.74119  3.35792  0.14560     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     33   3.09695  3.80803  0.09565  3.73654     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     34   0.11574  3.60237  2.94493  3.52575     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     35   0.11574  3.60237  2.94493  3.52575     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     36   2.99452  1.98351  3.04820  0.26800     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     37   3.31876  2.74119  3.35792  0.14560     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     38   3.31876  2.74119  3.35792  0.14560     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     39   0.11574  3.60237  2.94493  3.52575     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     40   0.11574  3.60237  2.94493  3.52575     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     41   3.09695  3.80803  0.09565  3.73654     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     42   3.68657  0.10364  3.72466  3.01034     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     43   0.11574  3.60237  2.94493  3.52575     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     44   3.31876  2.74119  3.35792  0.14560     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
+     45   0.11574  3.60237  2.94493  3.52575     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01623  4.12880        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Metazoa_1_SSU_end_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 01:27:41 2012
+NSEQ  16
+EFFN  3.191406
+CKSUM 2446389716
+STATS LOCAL MSV       -8.0800  0.71932
+STATS LOCAL VITERBI   -7.7749  0.71932
+STATS LOCAL FORWARD   -4.3446  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33411  1.54690  1.19059  1.51568
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  0.00000        *
+      1   0.14770  3.33730  2.77393  3.23493      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      2   2.91732  3.54398  0.12206  3.44415      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      3   3.04545  2.56765  3.09524  0.18579      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      4   3.38354  0.13628  3.43507  2.79277      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      5   2.91732  3.54398  0.12206  3.44415      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      6   3.04545  2.56765  3.09524  0.18579      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      7   0.14770  3.33730  2.77393  3.23493      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      8   0.14770  3.33730  2.77393  3.23493      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      9   3.38354  0.13628  3.43507  2.79277      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     10   0.14770  3.33730  2.77393  3.23493     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     11   0.14770  3.33730  2.77393  3.23493     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     12   2.91732  3.54398  0.12206  3.44415     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     13   2.91732  3.54398  0.12206  3.44415     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     14   3.04545  2.56765  3.09524  0.18579     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     15   0.14770  3.33730  2.77393  3.23493     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     16   3.38354  0.13628  3.43507  2.79277     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     17   3.38354  0.13628  3.43507  2.79277     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     18   3.04545  2.56765  3.09524  0.18579     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     19   2.91732  3.54398  0.12206  3.44415     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     20   3.04545  2.56765  3.09524  0.18579     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     21   0.14770  3.33730  2.77393  3.23493     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     22   2.91732  3.54398  0.12206  3.44415     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     23   2.91732  3.54398  0.12206  3.44415     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     24   3.04545  2.56765  3.09524  0.18579     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     25   2.91732  3.54398  0.12206  3.44415     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     26   0.14770  3.33730  2.77393  3.23493     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     27   0.14770  3.33730  2.77393  3.23493     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     28   3.38354  0.13628  3.43507  2.79277     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     29   3.38354  0.13628  3.43507  2.79277     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     30   3.04545  2.56765  3.09524  0.18579     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     31   2.91732  3.54398  0.12206  3.44415     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     32   3.38354  0.13628  3.43507  2.79277     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     33   0.14770  3.33730  2.77393  3.23493     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     34   2.91732  3.54398  0.12206  3.44415     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     35   2.91732  3.54398  0.12206  3.44415     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     36   3.04545  2.56765  3.09524  0.18579     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     37   2.91732  3.54398  0.12206  3.44415     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     38   2.91732  3.54398  0.12206  3.44415     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     39   0.14770  3.33730  2.77393  3.23493     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     40   3.04545  2.56765  3.09524  0.18579     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     41   3.38354  0.13628  3.43507  2.79277     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     42   0.14770  3.33730  2.77393  3.23493     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     43   3.04545  2.56765  3.09524  0.18579     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     44   3.38354  0.13628  3.43507  2.79277     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     45   2.91732  3.54398  0.12206  3.44415     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01908  3.96867        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Metazoa_1_SSU_end_eleven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 01:28:00 2012
+NSEQ  10
+EFFN  3.208008
+CKSUM 3737760971
+STATS LOCAL MSV       -8.0645  0.71933
+STATS LOCAL VITERBI   -7.5468  0.71933
+STATS LOCAL FORWARD   -4.2182  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39966  1.54309  1.19163  1.44446
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  0.00000        *
+      1   0.14694  3.34284  2.77755  3.24098      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      2   2.92124  3.54964  0.12142  3.45039      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      3   3.05099  2.57118  3.10057  0.18486      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      4   3.38993  0.13548  3.44120  2.79746      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      5   2.92124  3.54964  0.12142  3.45039      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      6   3.05099  2.57118  3.10057  0.18486      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      7   0.14694  3.34284  2.77755  3.24098      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      8   0.14694  3.34284  2.77755  3.24098      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+      9   3.38993  0.13548  3.44120  2.79746      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     10   0.14694  3.34284  2.77755  3.24098     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     11   0.14694  3.34284  2.77755  3.24098     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     12   2.92124  3.54964  0.12142  3.45039     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     13   2.92124  3.54964  0.12142  3.45039     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     14   3.05099  2.57118  3.10057  0.18486     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     15   2.92124  3.54964  0.12142  3.45039     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     16   2.92124  3.54964  0.12142  3.45039     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     17   3.38993  0.13548  3.44120  2.79746     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     18   3.05099  2.57118  3.10057  0.18486     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     19   2.92124  3.54964  0.12142  3.45039     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     20   3.05099  2.57118  3.10057  0.18486     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     21   0.14694  3.34284  2.77755  3.24098     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     22   2.92124  3.54964  0.12142  3.45039     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     23   2.92124  3.54964  0.12142  3.45039     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     24   3.05099  2.57118  3.10057  0.18486     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     25   2.92124  3.54964  0.12142  3.45039     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     26   0.14694  3.34284  2.77755  3.24098     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     27   0.14694  3.34284  2.77755  3.24098     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     28   3.38993  0.13548  3.44120  2.79746     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     29   3.38993  0.13548  3.44120  2.79746     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     30   3.05099  2.57118  3.10057  0.18486     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     31   2.92124  3.54964  0.12142  3.45039     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     32   3.38993  0.13548  3.44120  2.79746     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     33   3.05099  2.57118  3.10057  0.18486     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     34   2.92124  3.54964  0.12142  3.45039     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     35   3.38993  0.13548  3.44120  2.79746     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     36   3.38993  0.13548  3.44120  2.79746     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     37   2.92124  3.54964  0.12142  3.45039     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     38   2.92124  3.54964  0.12142  3.45039     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     39   0.14694  3.34284  2.77755  3.24098     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     40   3.05099  2.57118  3.10057  0.18486     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     41   3.38993  0.13548  3.44120  2.79746     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     42   0.14694  3.34284  2.77755  3.24098     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     43   3.05099  2.57118  3.10057  0.18486     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     44   3.05099  2.57118  3.10057  0.18486     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
+     45   0.14694  3.34284  2.77755  3.24098     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01902  3.97180        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Metazoa_1_SSU_end_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 01:27:18 2012
+NSEQ  591
+EFFN  3.386238
+CKSUM 2887535700
+STATS LOCAL MSV       -7.4974  0.71934
+STATS LOCAL VITERBI   -7.6825  0.71934
+STATS LOCAL FORWARD   -4.1124  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26745  1.62592  1.24870  1.44883
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  0.00000        *
+      1   0.13927  3.40040  2.81499  3.30397      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+      2   2.96152  3.60814  0.11495  3.51494      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+      3   3.10898  2.60809  3.15635  0.17543      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+      4   3.39712  0.13994  3.44732  2.72887      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+      5   2.96152  3.60814  0.11495  3.51494      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+      6   3.10898  2.60809  3.15635  0.17543      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+      7   0.13927  3.40040  2.81499  3.30397      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+      8   0.13927  3.40040  2.81499  3.30397      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+      9   3.45629  0.12748  3.50476  2.84585      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     10   0.13927  3.40040  2.81499  3.30397     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     11   0.13927  3.40040  2.81499  3.30397     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     12   2.96152  3.60814  0.11495  3.51494     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     13   2.96152  3.60814  0.11495  3.51494     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     14   3.07323  2.51816  3.12180  0.18748     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     15   3.06966  2.50946  3.11836  0.18872     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     16   3.10898  2.60809  3.15635  0.17543     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     17   3.36000  0.14815  3.41138  2.65969     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     18   3.26516  0.15740  3.13844  2.74735     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     19   2.87964  3.24062  0.14052  3.32982     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     20   3.10898  2.60809  3.15635  0.17543     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     21   0.13927  3.40040  2.81499  3.30397     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.05903  4.02289  3.23357  1.46634  0.26236  1.09861  0.40547
+     22   2.93472  3.56915  0.11922  3.47190     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00114  4.00114  1.46634  0.26236  0.64622  0.74239
+     23   2.96152  3.60814  0.11495  3.51494     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     24   2.99011  2.56246  2.89768  0.20156     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     25   2.96152  3.60814  0.11495  3.51494     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     26   0.13927  3.40040  2.81499  3.30397     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     27   0.13927  3.40040  2.81499  3.30397     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  4.02289  3.93074  1.46634  0.26236  1.09861  0.40547
+     28   3.45281  0.12788  3.50143  2.84332     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03652  4.02116  4.02116  1.46634  0.26236  1.03813  0.43714
+     29   3.20662  0.14667  3.38275  2.78108     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     30   3.07681  2.52693  3.12525  0.18625     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     31   2.84254  3.36777  0.15302  3.01292     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     32   3.45629  0.12748  3.50476  2.84585     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     33   2.96152  3.60814  0.11495  3.51494     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     34   2.87301  3.42675  0.14271  3.12424     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     35   0.13927  3.40040  2.81499  3.30397     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     36   0.13927  3.40040  2.81499  3.30397     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     37   2.96152  3.60814  0.11495  3.51494     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     38   2.96152  3.60814  0.11495  3.51494     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     39   0.13927  3.40040  2.81499  3.30397     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     40   3.10898  2.60809  3.15635  0.17543     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     41   3.45629  0.12748  3.50476  2.84585     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     42   0.15066  3.35632  2.71005  3.25812     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     43   3.10898  2.60809  3.15635  0.17543     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     44   2.89278  2.11895  2.94823  0.25879     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
+     45   0.14853  3.36439  2.72868  3.26658     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01840  4.00483        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Metazoa_1_SSU_end_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 01:27:06 2012
+NSEQ  4
+EFFN  3.472656
+CKSUM 3645550443
+STATS LOCAL MSV       -7.4702  0.71932
+STATS LOCAL VITERBI   -7.5589  0.71932
+STATS LOCAL FORWARD   -4.2514  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26293  1.64993  1.23935  1.44588
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  0.00000        *
+      1   0.13586  3.42710  2.83226  3.33324      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+      2   2.97992  3.63506  0.11211  3.54469      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+      3   3.13614  2.62533  3.18246  0.17120      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+      4   3.48700  0.12396  3.53414  2.86806      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+      5   2.97992  3.63506  0.11211  3.54469      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+      6   3.13614  2.62533  3.18246  0.17120      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+      7   0.13586  3.42710  2.83226  3.33324      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+      8   0.13586  3.42710  2.83226  3.33324      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+      9   3.48700  0.12396  3.53414  2.86806      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     10   0.13586  3.42710  2.83226  3.33324     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     11   0.13586  3.42710  2.83226  3.33324     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     12   2.97992  3.63506  0.11211  3.54469     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     13   2.97992  3.63506  0.11211  3.54469     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     14   3.13614  2.62533  3.18246  0.17120     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     15   0.13586  3.42710  2.83226  3.33324     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     16   2.97992  3.63506  0.11211  3.54469     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     17   3.48700  0.12396  3.53414  2.86806     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     18   3.13614  2.62533  3.18246  0.17120     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     19   2.97992  3.63506  0.11211  3.54469     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     20   3.13614  2.62533  3.18246  0.17120     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     21   0.13586  3.42710  2.83226  3.33324     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     22   2.97992  3.63506  0.11211  3.54469     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     23   2.97992  3.63506  0.11211  3.54469     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     24   3.13614  2.62533  3.18246  0.17120     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     25   2.97992  3.63506  0.11211  3.54469     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     26   0.13586  3.42710  2.83226  3.33324     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     27   0.13586  3.42710  2.83226  3.33324     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     28   3.48700  0.12396  3.53414  2.86806     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     29   3.48700  0.12396  3.53414  2.86806     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     30   3.13614  2.62533  3.18246  0.17120     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     31   2.97992  3.63506  0.11211  3.54469     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     32   3.48700  0.12396  3.53414  2.86806     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     33   2.43204  0.95279  2.50379  0.81035     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     34   2.97992  3.63506  0.11211  3.54469     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     35   0.13586  3.42710  2.83226  3.33324     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     36   3.13614  2.62533  3.18246  0.17120     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     37   2.97992  3.63506  0.11211  3.54469     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     38   2.97992  3.63506  0.11211  3.54469     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     39   0.13586  3.42710  2.83226  3.33324     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     40   3.13614  2.62533  3.18246  0.17120     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     41   3.48700  0.12396  3.53414  2.86806     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     42   0.13586  3.42710  2.83226  3.33324     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     43   2.43204  0.95279  2.50379  0.81035     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     44   3.13614  2.62533  3.18246  0.17120     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
+     45   0.13586  3.42710  2.83226  3.33324     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01811  4.02046        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Metazoa_1_SSU_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 01:26:32 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1503601274
+STATS LOCAL MSV       -7.3789  0.72782
+STATS LOCAL VITERBI   -8.2132  0.72782
+STATS LOCAL FORWARD   -3.5272  0.72782
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28360  1.60112  1.25644  1.44128
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Metazoa_1_SSU_end_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 01:27:33 2012
+NSEQ  18
+EFFN  3.229980
+CKSUM 3803743119
+STATS LOCAL MSV       -8.0117  0.71931
+STATS LOCAL VITERBI   -7.6232  0.71931
+STATS LOCAL FORWARD   -4.2368  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27186  1.62652  1.24657  1.44567
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  0.00000        *
+      1   0.14594  3.35012  2.78230  3.24895      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+      2   2.92638  3.55708  0.12057  3.45859      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+      3   3.05828  2.57583  3.10759  0.18364      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+      4   3.39834  0.13443  3.44926  2.80362      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+      5   2.92638  3.55708  0.12057  3.45859      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+      6   3.05828  2.57583  3.10759  0.18364      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+      7   0.14594  3.35012  2.78230  3.24895      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+      8   0.14594  3.35012  2.78230  3.24895      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+      9   3.39834  0.13443  3.44926  2.80362      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     10   0.14594  3.35012  2.78230  3.24895     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     11   0.14594  3.35012  2.78230  3.24895     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     12   2.92638  3.55708  0.12057  3.45859     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     13   2.92638  3.55708  0.12057  3.45859     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     14   3.05828  2.57583  3.10759  0.18364     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     15   0.14594  3.35012  2.78230  3.24895     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     16   3.05828  2.57583  3.10759  0.18364     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     17   3.39834  0.13443  3.44926  2.80362     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     18   3.05828  2.57583  3.10759  0.18364     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     19   2.92638  3.55708  0.12057  3.45859     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     20   3.05828  2.57583  3.10759  0.18364     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     21   0.14594  3.35012  2.78230  3.24895     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     22   2.92638  3.55708  0.12057  3.45859     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     23   2.92638  3.55708  0.12057  3.45859     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     24   3.05828  2.57583  3.10759  0.18364     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     25   2.92638  3.55708  0.12057  3.45859     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     26   0.14594  3.35012  2.78230  3.24895     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     27   0.14594  3.35012  2.78230  3.24895     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     28   3.39834  0.13443  3.44926  2.80362     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     29   3.39834  0.13443  3.44926  2.80362     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     30   3.05828  2.57583  3.10759  0.18364     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     31   2.92638  3.55708  0.12057  3.45859     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     32   3.39834  0.13443  3.44926  2.80362     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     33   0.14594  3.35012  2.78230  3.24895     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     34   2.92638  3.55708  0.12057  3.45859     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     35   0.14594  3.35012  2.78230  3.24895     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     36   3.05828  2.57583  3.10759  0.18364     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     37   2.92638  3.55708  0.12057  3.45859     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     38   2.92638  3.55708  0.12057  3.45859     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     39   0.14594  3.35012  2.78230  3.24895     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     40   3.05828  2.57583  3.10759  0.18364     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     41   3.39834  0.13443  3.44926  2.80362     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     42   0.14594  3.35012  2.78230  3.24895     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     43   3.05828  2.57583  3.10759  0.18364     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     44   3.39834  0.13443  3.44926  2.80362     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     45   2.92638  3.55708  0.12057  3.45859     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01894  3.97593        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Metazoa_1_SSU_end_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 01:27:25 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4122535879
+STATS LOCAL MSV       -7.3837  0.72782
+STATS LOCAL VITERBI   -8.2233  0.72782
+STATS LOCAL FORWARD   -3.6249  0.72782
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28359  1.60112  1.25644  1.44128
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Metazoa_1_SSU_end_ten_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 01:27:52 2012
+NSEQ  62
+EFFN  3.265747
+CKSUM 2000784101
+STATS LOCAL MSV       -8.1222  0.71931
+STATS LOCAL VITERBI   -7.5567  0.71931
+STATS LOCAL FORWARD   -4.4003  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33291  1.62010  1.24727  1.38180
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  0.00000        *
+      1   0.14435  3.36186  2.78995  3.26179      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+      2   2.93465  3.56905  0.11923  3.47179      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+      3   3.00370  2.42271  3.05476  0.20508      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+      4   3.41189  0.13277  3.46224  2.81353      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+      5   2.93465  3.56905  0.11923  3.47179      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+      6   3.07007  2.58334  3.11893  0.18169      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+      7   0.14435  3.36186  2.78995  3.26179      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+      8   0.14435  3.36186  2.78995  3.26179      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+      9   3.41189  0.13277  3.46224  2.81353      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     10   0.14435  3.36186  2.78995  3.26179     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     11   0.14435  3.36186  2.78995  3.26179     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     12   2.93465  3.56905  0.11923  3.47179     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     13   2.93465  3.56905  0.11923  3.47179     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     14   3.07007  2.58334  3.11893  0.18169     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     15   0.14435  3.36186  2.78995  3.26179     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     16   2.93465  3.56905  0.11923  3.47179     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     17   3.41189  0.13277  3.46224  2.81353     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     18   3.07007  2.58334  3.11893  0.18169     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     19   2.93465  3.56905  0.11923  3.47179     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     20   3.00370  2.42271  3.05476  0.20508     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     21   0.14435  3.36186  2.78995  3.26179     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     22   2.93465  3.56905  0.11923  3.47179     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     23   2.93465  3.56905  0.11923  3.47179     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     24   3.07007  2.58334  3.11893  0.18169     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     25   2.93465  3.56905  0.11923  3.47179     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     26   0.14435  3.36186  2.78995  3.26179     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     27   0.14435  3.36186  2.78995  3.26179     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     28   3.41189  0.13277  3.46224  2.81353     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     29   3.41189  0.13277  3.46224  2.81353     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     30   3.07007  2.58334  3.11893  0.18169     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     31   2.93465  3.56905  0.11923  3.47179     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     32   3.41189  0.13277  3.46224  2.81353     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     33   3.07007  2.58334  3.11893  0.18169     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     34   2.93465  3.56905  0.11923  3.47179     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     35   3.41189  0.13277  3.46224  2.81353     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     36   3.07007  2.58334  3.11893  0.18169     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     37   2.93465  3.56905  0.11923  3.47179     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     38   2.93465  3.56905  0.11923  3.47179     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     39   0.14435  3.36186  2.78995  3.26179     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     40   3.07007  2.58334  3.11893  0.18169     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     41   3.41189  0.13277  3.46224  2.81353     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     42   0.14435  3.36186  2.78995  3.26179     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     43   3.07007  2.58334  3.11893  0.18169     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     44   3.07007  2.58334  3.11893  0.18169     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
+     45   0.14435  3.36186  2.78995  3.26179     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01881  3.98262        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Metazoa_1_SSU_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 01:26:53 2012
+NSEQ  48
+EFFN  3.360352
+CKSUM 289798115
+STATS LOCAL MSV       -8.0419  0.71933
+STATS LOCAL VITERBI   -7.6796  0.71933
+STATS LOCAL FORWARD   -4.4230  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.32949  1.58777  1.24433  1.41522
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  0.00000        *
+      1   0.14032  3.39225  2.80970  3.29505      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+      2   2.95587  3.59990  0.11584  3.50584      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+      3   3.10072  2.60284  3.14841  0.17674      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+      4   3.44691  0.12857  3.49579  2.83904      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+      5   2.95587  3.59990  0.11584  3.50584      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+      6   3.10072  2.60284  3.14841  0.17674      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+      7   0.14032  3.39225  2.80970  3.29505      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+      8   0.14032  3.39225  2.80970  3.29505      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+      9   3.44691  0.12857  3.49579  2.83904      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     10   0.14032  3.39225  2.80970  3.29505     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     11   0.14032  3.39225  2.80970  3.29505     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     12   2.95587  3.59990  0.11584  3.50584     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     13   2.95587  3.59990  0.11584  3.50584     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     14   3.10072  2.60284  3.14841  0.17674     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     15   0.14032  3.39225  2.80970  3.29505     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     16   2.95587  3.59990  0.11584  3.50584     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     17   3.44691  0.12857  3.49579  2.83904     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     18   2.41326  0.87609  2.48559  0.88966     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     19   2.95587  3.59990  0.11584  3.50584     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     20   3.10072  2.60284  3.14841  0.17674     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     21   0.14032  3.39225  2.80970  3.29505     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     22   2.95587  3.59990  0.11584  3.50584     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     23   2.95587  3.59990  0.11584  3.50584     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     24   3.10072  2.60284  3.14841  0.17674     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     25   2.95587  3.59990  0.11584  3.50584     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     26   0.14032  3.39225  2.80970  3.29505     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     27   0.14032  3.39225  2.80970  3.29505     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     28   3.44691  0.12857  3.49579  2.83904     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     29   3.44691  0.12857  3.49579  2.83904     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     30   3.10072  2.60284  3.14841  0.17674     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     31   3.10072  2.60284  3.14841  0.17674     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     32   3.44691  0.12857  3.49579  2.83904     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     33   2.95587  3.59990  0.11584  3.50584     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     34   2.95587  3.59990  0.11584  3.50584     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     35   3.44691  0.12857  3.49579  2.83904     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     36   3.02168  2.41083  3.07214  0.20430     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     37   2.95587  3.59990  0.11584  3.50584     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     38   2.95587  3.59990  0.11584  3.50584     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     39   0.14032  3.39225  2.80970  3.29505     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     40   3.10072  2.60284  3.14841  0.17674     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     41   3.44691  0.12857  3.49579  2.83904     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     42   0.14032  3.39225  2.80970  3.29505     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     43   3.10072  2.60284  3.14841  0.17674     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     44   3.10072  2.60284  3.14841  0.17674     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
+     45   0.14032  3.39225  2.80970  3.29505     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01848  4.00010        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Metazoa_1_SSU_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 01:26:41 2012
+NSEQ  24
+EFFN  3.424805
+CKSUM 2794101933
+STATS LOCAL MSV       -7.4074  0.71933
+STATS LOCAL VITERBI   -7.5219  0.71933
+STATS LOCAL FORWARD   -4.3767  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.32087  1.61279  1.23841  1.41090
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  0.00000        *
+      1   0.13772  3.41241  2.82276  3.31713      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+      2   2.96982  3.62027  0.11366  3.52834      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+      3   3.12118  2.61584  3.16808  0.17352      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+      4   3.47011  0.12588  3.51799  2.85586      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+      5   2.96982  3.62027  0.11366  3.52834      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+      6   3.12118  2.61584  3.16808  0.17352      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+      7   0.13772  3.41241  2.82276  3.31713      7 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     43   2.97957  2.28186  3.03175  0.22457     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
+     44   3.12118  2.61584  3.16808  0.17352     44 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   0.13772  3.41241  2.82276  3.31713     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01827  4.01183        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/M.hmm.h3f
Binary file ITSx_db/HMMs/M.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/M.hmm.h3i
Binary file ITSx_db/HMMs/M.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/M.hmm.h3m
Binary file ITSx_db/HMMs/M.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/M.hmm.h3p
Binary file ITSx_db/HMMs/M.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/N.hmm
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/O.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/O.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,11005 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:03:14 2012
+NSEQ  2983
+EFFN  3.376790
+CKSUM 630809808
+STATS LOCAL MSV       -7.3235  0.71932
+STATS LOCAL VITERBI   -7.7268  0.71932
+STATS LOCAL FORWARD   -3.9994  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71234  1.37658  1.27028  1.25049
+          1.38629  1.38629  1.38629  1.38629
+          0.03652  4.02119  4.02119  1.46634  0.26236  0.00000        *
+      1   3.45287  0.12788  3.50149  2.84336      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
+      2   0.13965  3.39742  2.81306  3.30071      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
+      3   3.45287  0.12788  3.50149  2.84336      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
+      4   3.10596  2.60617  3.15345  0.17590      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
+      5   3.07064  2.51740  3.11930  0.18784      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
+      6   3.40266  0.13843  3.45273  2.74368      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
+      7   3.45287  0.12788  3.50149  2.84336      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03652  4.02119  4.02119  1.46634  0.26236  1.09861  0.40547
+      8   2.95946  3.60514  0.11528  3.51162      8 - -
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+      9   2.95946  3.60514  0.11528  3.51162      9 - -
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+     11   3.07576  2.52995  3.12424  0.18607     11 - -
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     45   0.13965  3.39742  2.81306  3.30071     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01843  4.00310        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_eighteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:05:17 2012
+NSEQ  66
+EFFN  3.387817
+CKSUM 3936920601
+STATS LOCAL MSV       -7.3341  0.71931
+STATS LOCAL VITERBI   -7.7613  0.71931
+STATS LOCAL FORWARD   -4.0489  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72377  1.45753  1.31845  1.13554
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  0.00000        *
+      1   3.45687  0.12741  3.50531  2.84626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+      2   0.13920  3.40089  2.81531  3.30452      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+      3   3.45687  0.12741  3.50531  2.84626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+      4   3.10948  2.60841  3.15684  0.17535      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+      5   3.10948  2.60841  3.15684  0.17535      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+      6   3.10948  2.60841  3.15684  0.17535      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+      7   3.45687  0.12741  3.50531  2.84626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+      8   2.96186  3.60865  0.11490  3.51549      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+      9   2.96186  3.60865  0.11490  3.51549      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     10   2.96186  3.60865  0.11490  3.51549     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     11   3.10948  2.60841  3.15684  0.17535     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     12   3.10948  2.60841  3.15684  0.17535     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     13   2.85130  0.31564  2.91699  1.84004     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     14   3.10948  2.60841  3.15684  0.17535     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     15   2.96186  3.60865  0.11490  3.51549     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     16   3.45687  0.12741  3.50531  2.84626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     17   3.45687  0.12741  3.50531  2.84626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     18   3.10948  2.60841  3.15684  0.17535     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     19   2.96186  3.60865  0.11490  3.51549     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     20   2.96186  3.60865  0.11490  3.51549     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     21   0.13920  3.40089  2.81531  3.30452     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     22   0.13920  3.40089  2.81531  3.30452     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     23   2.96186  3.60865  0.11490  3.51549     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     24   3.10948  2.60841  3.15684  0.17535     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     25   0.13920  3.40089  2.81531  3.30452     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     26   3.10948  2.60841  3.15684  0.17535     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     27   2.96186  3.60865  0.11490  3.51549     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     28   3.10948  2.60841  3.15684  0.17535     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     29   3.45687  0.12741  3.50531  2.84626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     30   3.10948  2.60841  3.15684  0.17535     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     31   2.96186  3.60865  0.11490  3.51549     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     32   3.10948  2.60841  3.15684  0.17535     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     33   0.13920  3.40089  2.81531  3.30452     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     34   3.10948  2.60841  3.15684  0.17535     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     35   3.45687  0.12741  3.50531  2.84626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     36   0.13920  3.40089  2.81531  3.30452     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     37   2.96186  3.60865  0.11490  3.51549     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     38   3.10948  2.60841  3.15684  0.17535     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     39   2.96186  3.60865  0.11490  3.51549     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     40   3.10948  2.60841  3.15684  0.17535     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     41   3.45687  0.12741  3.50531  2.84626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     42   3.45687  0.12741  3.50531  2.84626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     43   2.96186  3.60865  0.11490  3.51549     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     44   3.10948  2.60841  3.15684  0.17535     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02317  4.02317  1.46634  0.26236  1.09861  0.40547
+     45   0.13920  3.40089  2.81531  3.30452     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01839  4.00512        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_eleven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:03:45 2012
+NSEQ  5
+EFFN  3.286133
+CKSUM 3431982012
+STATS LOCAL MSV       -8.0387  0.71931
+STATS LOCAL VITERBI   -7.7022  0.71931
+STATS LOCAL FORWARD   -3.9965  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72267  1.44764  1.25731  1.19776
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  0.00000        *
+      1   3.41954  0.13184  3.46957  2.81911      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+      2   0.14346  3.36849  2.79427  3.26904      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+      3   3.41954  0.13184  3.46957  2.81911      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+      4   3.07674  2.58759  3.12535  0.18060      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+      5   3.07674  2.58759  3.12535  0.18060      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+      6   3.41954  0.13184  3.46957  2.81911      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+      7   3.41954  0.13184  3.46957  2.81911      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+      8   2.93930  3.57580  0.11848  3.47923      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+      9   2.93930  3.57580  0.11848  3.47923      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     10   2.93930  3.57580  0.11848  3.47923     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     11   3.07674  2.58759  3.12535  0.18060     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     12   3.07674  2.58759  3.12535  0.18060     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     13   0.14346  3.36849  2.79427  3.26904     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     14   3.07674  2.58759  3.12535  0.18060     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     15   2.93930  3.57580  0.11848  3.47923     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     16   3.41954  0.13184  3.46957  2.81911     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     17   3.41954  0.13184  3.46957  2.81911     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     18   3.07674  2.58759  3.12535  0.18060     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     19   2.93930  3.57580  0.11848  3.47923     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     20   2.93930  3.57580  0.11848  3.47923     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     21   2.93930  3.57580  0.11848  3.47923     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     22   0.14346  3.36849  2.79427  3.26904     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     23   2.93930  3.57580  0.11848  3.47923     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     24   3.07674  2.58759  3.12535  0.18060     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     25   0.14346  3.36849  2.79427  3.26904     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     26   3.07674  2.58759  3.12535  0.18060     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     27   2.93930  3.57580  0.11848  3.47923     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     28   3.07674  2.58759  3.12535  0.18060     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     29   3.41954  0.13184  3.46957  2.81911     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     30   3.07674  2.58759  3.12535  0.18060     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     31   2.93930  3.57580  0.11848  3.47923     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     32   3.07674  2.58759  3.12535  0.18060     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     33   0.14346  3.36849  2.79427  3.26904     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     34   3.07674  2.58759  3.12535  0.18060     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     35   3.41954  0.13184  3.46957  2.81911     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     36   0.14346  3.36849  2.79427  3.26904     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     37   2.93930  3.57580  0.11848  3.47923     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     38   3.07674  2.58759  3.12535  0.18060     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     39   2.93930  3.57580  0.11848  3.47923     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     40   3.07674  2.58759  3.12535  0.18060     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     41   3.41954  0.13184  3.46957  2.81911     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     42   3.41954  0.13184  3.46957  2.81911     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     43   2.93930  3.57580  0.11848  3.47923     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     44   3.07674  2.58759  3.12535  0.18060     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     45   0.14346  3.36849  2.79427  3.26904     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01874  3.98641        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_fifteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:04:33 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3914797017
+STATS LOCAL MSV       -7.4374  0.72820
+STATS LOCAL VITERBI   -8.4197  0.72820
+STATS LOCAL FORWARD   -3.4238  0.72820
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66221  1.33035  1.32438  1.27323
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_fifty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:11:28 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 967929854
+STATS LOCAL MSV       -7.3485  0.72825
+STATS LOCAL VITERBI   -8.2404  0.72825
+STATS LOCAL FORWARD   -3.4311  0.72825
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.52311  1.27981  1.44171  1.31919
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_fiftyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:11:37 2012
+NSEQ  7
+EFFN  3.264160
+CKSUM 713685856
+STATS LOCAL MSV       -8.1498  0.71932
+STATS LOCAL VITERBI   -7.7201  0.71932
+STATS LOCAL FORWARD   -4.3295  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55404  1.31478  1.38653  1.30885
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  0.00000        *
+      1   3.41129  0.13284  3.46167  2.81309      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      2   3.41129  0.13284  3.46167  2.81309      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      3   0.14442  3.36134  2.78962  3.26122      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      4   3.41129  0.13284  3.46167  2.81309      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      5   3.41129  0.13284  3.46167  2.81309      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      6   3.06955  2.58301  3.11843  0.18178      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      7   0.14442  3.36134  2.78962  3.26122      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      8   3.06955  2.58301  3.11843  0.18178      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+      9   2.93428  3.56852  0.11929  3.47120      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     10   3.41129  0.13284  3.46167  2.81309     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     11   3.06955  2.58301  3.11843  0.18178     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     12   0.14442  3.36134  2.78962  3.26122     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     13   3.41129  0.13284  3.46167  2.81309     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     14   2.93428  3.56852  0.11929  3.47120     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     15   3.41129  0.13284  3.46167  2.81309     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     16   3.06955  2.58301  3.11843  0.18178     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     17   0.14442  3.36134  2.78962  3.26122     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     18   3.06955  2.58301  3.11843  0.18178     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     19   2.93428  3.56852  0.11929  3.47120     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     20   2.93428  3.56852  0.11929  3.47120     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     21   0.14442  3.36134  2.78962  3.26122     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     22   2.93428  3.56852  0.11929  3.47120     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     23   2.93428  3.56852  0.11929  3.47120     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     24   3.06955  2.58301  3.11843  0.18178     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     25   0.14442  3.36134  2.78962  3.26122     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     26   3.06955  2.58301  3.11843  0.18178     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     27   2.93428  3.56852  0.11929  3.47120     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     28   3.41129  0.13284  3.46167  2.81309     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     29   3.41129  0.13284  3.46167  2.81309     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     30   3.06955  2.58301  3.11843  0.18178     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     31   2.93428  3.56852  0.11929  3.47120     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     32   3.06955  2.58301  3.11843  0.18178     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     33   2.93428  3.56852  0.11929  3.47120     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     34   3.06955  2.58301  3.11843  0.18178     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     35   3.41129  0.13284  3.46167  2.81309     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     36   0.14442  3.36134  2.78962  3.26122     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     37   2.93428  3.56852  0.11929  3.47120     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     38   3.06955  2.58301  3.11843  0.18178     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     39   2.93428  3.56852  0.11929  3.47120     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     40   3.06955  2.58301  3.11843  0.18178     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     41   3.06955  2.58301  3.11843  0.18178     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     42   3.41129  0.13284  3.46167  2.81309     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     43   3.41129  0.13284  3.46167  2.81309     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     44   0.14442  3.36134  2.78962  3.26122     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
+     45   0.14442  3.36134  2.78962  3.26122     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01882  3.98232        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:02:23 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1892825005
+STATS LOCAL MSV       -7.2444  0.72835
+STATS LOCAL VITERBI   -8.3433  0.72835
+STATS LOCAL FORWARD   -3.3819  0.72835
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73627  1.44157  1.26874  1.18390
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_fortyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:11:04 2012
+NSEQ  7
+EFFN  3.346191
+CKSUM 1450221519
+STATS LOCAL MSV       -8.1812  0.71933
+STATS LOCAL VITERBI   -7.6059  0.71933
+STATS LOCAL FORWARD   -4.2073  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47372  1.37170  1.38114  1.32441
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  0.00000        *
+      1   3.09618  2.59996  3.14405  0.17746      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+      2   0.14091  3.38776  2.80679  3.29014      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+      3   3.44175  0.12918  3.49084  2.83528      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+      4   3.44175  0.12918  3.49084  2.83528      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+      5   2.95275  3.59536  0.11633  3.50082      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+      6   2.95275  3.59536  0.11633  3.50082      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+      7   2.95275  3.59536  0.11633  3.50082      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+      8   2.95275  3.59536  0.11633  3.50082      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+      9   3.44175  0.12918  3.49084  2.83528      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     10   3.09618  2.59996  3.14405  0.17746     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     11   0.14091  3.38776  2.80679  3.29014     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     12   2.95275  3.59536  0.11633  3.50082     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     13   0.14091  3.38776  2.80679  3.29014     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     14   3.09618  2.59996  3.14405  0.17746     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     15   3.44175  0.12918  3.49084  2.83528     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     16   3.09618  2.59996  3.14405  0.17746     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     17   3.09618  2.59996  3.14405  0.17746     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     18   3.44175  0.12918  3.49084  2.83528     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     19   2.95275  3.59536  0.11633  3.50082     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     20   2.95275  3.59536  0.11633  3.50082     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     21   0.14091  3.38776  2.80679  3.29014     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     22   0.14091  3.38776  2.80679  3.29014     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     23   2.95275  3.59536  0.11633  3.50082     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     24   3.09618  2.59996  3.14405  0.17746     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     25   0.14091  3.38776  2.80679  3.29014     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     26   3.09618  2.59996  3.14405  0.17746     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     27   2.95275  3.59536  0.11633  3.50082     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     28   3.44175  0.12918  3.49084  2.83528     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     29   3.44175  0.12918  3.49084  2.83528     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     30   3.09618  2.59996  3.14405  0.17746     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     31   3.44175  0.12918  3.49084  2.83528     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     32   3.09618  2.59996  3.14405  0.17746     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     33   0.14091  3.38776  2.80679  3.29014     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     34   3.09618  2.59996  3.14405  0.17746     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     35   3.44175  0.12918  3.49084  2.83528     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     36   0.14091  3.38776  2.80679  3.29014     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     37   2.95275  3.59536  0.11633  3.50082     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     38   3.09618  2.59996  3.14405  0.17746     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     39   2.95275  3.59536  0.11633  3.50082     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     40   3.09618  2.59996  3.14405  0.17746     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     41   3.44175  0.12918  3.49084  2.83528     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     42   3.44175  0.12918  3.49084  2.83528     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     43   0.14091  3.38776  2.80679  3.29014     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     44   2.55815  1.47151  2.62502  0.47717     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01570  4.01570  1.46634  0.26236  1.09861  0.40547
+     45   0.14091  3.38776  2.80679  3.29014     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01853  3.99750        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_fortyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:10:31 2012
+NSEQ  32
+EFFN  3.292969
+CKSUM 950115204
+STATS LOCAL MSV       -8.1199  0.71933
+STATS LOCAL VITERBI   -7.9534  0.71933
+STATS LOCAL FORWARD   -3.9017  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.64328  1.19125  1.53972  1.24350
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  0.00000        *
+      1   3.42209  0.13153  3.47201  2.82097      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      2   3.07897  2.58901  3.12749  0.18024      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      3   3.07897  2.58901  3.12749  0.18024      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      4   3.42209  0.13153  3.47201  2.82097      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      5   3.07897  2.58901  3.12749  0.18024      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      6   3.42209  0.13153  3.47201  2.82097      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      7   2.94085  3.57805  0.11823  3.48171      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      8   2.94085  3.57805  0.11823  3.48171      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+      9   2.94085  3.57805  0.11823  3.48171      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     10   3.42209  0.13153  3.47201  2.82097     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     11   3.07897  2.58901  3.12749  0.18024     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     12   0.14316  3.37070  2.79571  3.27146     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     13   2.94085  3.57805  0.11823  3.48171     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     14   3.07897  2.58901  3.12749  0.18024     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     15   3.42209  0.13153  3.47201  2.82097     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     16   3.07897  2.58901  3.12749  0.18024     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     17   3.42209  0.13153  3.47201  2.82097     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     18   3.42209  0.13153  3.47201  2.82097     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     19   3.07897  2.58901  3.12749  0.18024     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     20   2.94085  3.57805  0.11823  3.48171     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     21   0.14316  3.37070  2.79571  3.27146     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     22   0.14316  3.37070  2.79571  3.27146     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     23   2.94085  3.57805  0.11823  3.48171     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     24   3.07897  2.58901  3.12749  0.18024     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     25   0.14316  3.37070  2.79571  3.27146     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     26   3.07897  2.58901  3.12749  0.18024     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     27   2.94085  3.57805  0.11823  3.48171     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     28   3.42209  0.13153  3.47201  2.82097     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     29   3.42209  0.13153  3.47201  2.82097     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     30   3.07897  2.58901  3.12749  0.18024     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     31   3.42209  0.13153  3.47201  2.82097     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     32   3.07897  2.58901  3.12749  0.18024     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     33   0.14316  3.37070  2.79571  3.27146     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     34   3.07897  2.58901  3.12749  0.18024     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     35   3.42209  0.13153  3.47201  2.82097     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     36   0.14316  3.37070  2.79571  3.27146     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     37   2.94085  3.57805  0.11823  3.48171     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     38   3.07897  2.58901  3.12749  0.18024     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     39   2.94085  3.57805  0.11823  3.48171     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     40   3.07897  2.58901  3.12749  0.18024     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     41   3.42209  0.13153  3.47201  2.82097     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     42   3.42209  0.13153  3.47201  2.82097     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     43   0.14316  3.37070  2.79571  3.27146     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     44   3.42209  0.13153  3.47201  2.82097     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
+     45   0.14316  3.37070  2.79571  3.27146     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01872  3.98768        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_fortyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:10:21 2012
+NSEQ  10
+EFFN  3.266602
+CKSUM 1629254486
+STATS LOCAL MSV       -8.1952  0.71931
+STATS LOCAL VITERBI   -7.8219  0.71931
+STATS LOCAL FORWARD   -3.7929  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.64193  1.19469  1.46172  1.30284
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  0.00000        *
+      1   3.41221  0.13273  3.46255  2.81376      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+      2   3.07035  2.58352  3.11920  0.18165      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+      3   3.07035  2.58352  3.11920  0.18165      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+      4   3.41221  0.13273  3.46255  2.81376      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+      5   3.41221  0.13273  3.46255  2.81376      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+      6   3.07035  2.58352  3.11920  0.18165      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+      7   2.93484  3.56933  0.11920  3.47210      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+      8   2.93484  3.56933  0.11920  3.47210      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+      9   2.93484  3.56933  0.11920  3.47210      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     10   3.41221  0.13273  3.46255  2.81376     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     11   3.07035  2.58352  3.11920  0.18165     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     12   0.14431  3.36214  2.79014  3.26209     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     13   2.93484  3.56933  0.11920  3.47210     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     14   3.07035  2.58352  3.11920  0.18165     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     15   3.41221  0.13273  3.46255  2.81376     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     16   3.07035  2.58352  3.11920  0.18165     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     17   3.41221  0.13273  3.46255  2.81376     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     18   3.41221  0.13273  3.46255  2.81376     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     19   2.93484  3.56933  0.11920  3.47210     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     20   2.93484  3.56933  0.11920  3.47210     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     21   0.14431  3.36214  2.79014  3.26209     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     22   0.14431  3.36214  2.79014  3.26209     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     23   2.93484  3.56933  0.11920  3.47210     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     24   3.07035  2.58352  3.11920  0.18165     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     25   0.14431  3.36214  2.79014  3.26209     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     26   3.07035  2.58352  3.11920  0.18165     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     27   2.93484  3.56933  0.11920  3.47210     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     28   3.41221  0.13273  3.46255  2.81376     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     29   3.41221  0.13273  3.46255  2.81376     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     30   3.07035  2.58352  3.11920  0.18165     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     31   3.41221  0.13273  3.46255  2.81376     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     32   3.07035  2.58352  3.11920  0.18165     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     33   0.14431  3.36214  2.79014  3.26209     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     34   3.07035  2.58352  3.11920  0.18165     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     35   3.41221  0.13273  3.46255  2.81376     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     36   0.14431  3.36214  2.79014  3.26209     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     37   2.93484  3.56933  0.11920  3.47210     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     38   3.07035  2.58352  3.11920  0.18165     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     39   2.93484  3.56933  0.11920  3.47210     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     40   3.07035  2.58352  3.11920  0.18165     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     41   3.41221  0.13273  3.46255  2.81376     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     42   3.41221  0.13273  3.46255  2.81376     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     43   0.14431  3.36214  2.79014  3.26209     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     44   3.41221  0.13273  3.46255  2.81376     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
+     45   0.14431  3.36214  2.79014  3.26209     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01881  3.98278        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_fortynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:11:14 2012
+NSEQ  77
+EFFN  3.501282
+CKSUM 2729618959
+STATS LOCAL MSV       -7.5473  0.71934
+STATS LOCAL VITERBI   -7.7199  0.71934
+STATS LOCAL FORWARD   -3.9750  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55389  1.28430  1.53341  1.21762
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  0.00000        *
+      1   3.49696  0.12284  3.54366  2.87525      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+      2   3.14500  2.63096  3.19098  0.16985      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+      3   3.14500  2.63096  3.19098  0.16985      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+      4   3.49696  0.12284  3.54366  2.87525      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+      5   3.14500  2.63096  3.19098  0.16985      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+      6   3.14500  2.63096  3.19098  0.16985      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+      7   2.98586  3.64378  0.11121  3.55433      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+      8   2.98586  3.64378  0.11121  3.55433      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+      9   2.98586  3.64378  0.11121  3.55433      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     10   2.74372  0.38620  2.81168  1.62999     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     11   3.14500  2.63096  3.19098  0.16985     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     12   0.13478  3.43577  2.83786  3.34275     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     13   2.98586  3.64378  0.11121  3.55433     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     14   3.14500  2.63096  3.19098  0.16985     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     15   3.49696  0.12284  3.54366  2.87525     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     16   3.49696  0.12284  3.54366  2.87525     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     17   3.14500  2.63096  3.19098  0.16985     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     18   0.13478  3.43577  2.83786  3.34275     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     19   3.49696  0.12284  3.54366  2.87525     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     20   2.98586  3.64378  0.11121  3.55433     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     21   0.13478  3.43577  2.83786  3.34275     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     22   0.13478  3.43577  2.83786  3.34275     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     23   2.98586  3.64378  0.11121  3.55433     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     24   3.14500  2.63096  3.19098  0.16985     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     25   0.13478  3.43577  2.83786  3.34275     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     26   3.14500  2.63096  3.19098  0.16985     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     27   2.98586  3.64378  0.11121  3.55433     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     28   3.49696  0.12284  3.54366  2.87525     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     29   3.49696  0.12284  3.54366  2.87525     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     30   3.14500  2.63096  3.19098  0.16985     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     31   3.49696  0.12284  3.54366  2.87525     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     32   3.14500  2.63096  3.19098  0.16985     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     33   0.13478  3.43577  2.83786  3.34275     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     34   3.14500  2.63096  3.19098  0.16985     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     35   3.49696  0.12284  3.54366  2.87525     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     36   0.13478  3.43577  2.83786  3.34275     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     37   2.98586  3.64378  0.11121  3.55433     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     38   3.14500  2.63096  3.19098  0.16985     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     39   2.98586  3.64378  0.11121  3.55433     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     40   3.14500  2.63096  3.19098  0.16985     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     41   3.49696  0.12284  3.54366  2.87525     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     42   3.49696  0.12284  3.54366  2.87525     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     43   0.13478  3.43577  2.83786  3.34275     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     44   2.58677  0.51901  2.65746  1.34899     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03571  4.04328  4.04328  1.46634  0.26236  1.09861  0.40547
+     45   0.13478  3.43577  2.83786  3.34275     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01801  4.02558        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_fortyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:09:53 2012
+NSEQ  13
+EFFN  3.570557
+CKSUM 2743763495
+STATS LOCAL MSV       -7.4127  0.71933
+STATS LOCAL VITERBI   -7.7019  0.71933
+STATS LOCAL FORWARD   -3.6164  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66856  1.57761  1.29461  1.10561
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  0.00000        *
+      1   2.99995  3.66446  0.10910  3.57724      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+      2   3.52065  0.12024  3.56632  2.89230      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+      3   0.13224  3.45644  2.85118  3.36541      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+      4   3.52065  0.12024  3.56632  2.89230      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+      5   3.16617  2.64439  3.21133  0.16666      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+      6   3.16617  2.64439  3.21133  0.16666      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+      7   2.50299  1.21696  2.57233  0.60573      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+      8   3.52065  0.12024  3.56632  2.89230      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+      9   2.99995  3.66446  0.10910  3.57724      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     10   2.99995  3.66446  0.10910  3.57724     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     11   2.99995  3.66446  0.10910  3.57724     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     12   3.16617  2.64439  3.21133  0.16666     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     13   0.13224  3.45644  2.85118  3.36541     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     14   3.16617  2.64439  3.21133  0.16666     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     15   3.16617  2.64439  3.21133  0.16666     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     16   3.52065  0.12024  3.56632  2.89230     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     17   3.52065  0.12024  3.56632  2.89230     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     18   3.16617  2.64439  3.21133  0.16666     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     19   2.99995  3.66446  0.10910  3.57724     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     20   2.99995  3.66446  0.10910  3.57724     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     21   0.60012  2.61486  1.22476  2.47401     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     22   0.13224  3.45644  2.85118  3.36541     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     23   2.99995  3.66446  0.10910  3.57724     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     24   3.16617  2.64439  3.21133  0.16666     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     25   0.13224  3.45644  2.85118  3.36541     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     26   3.16617  2.64439  3.21133  0.16666     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     27   2.99995  3.66446  0.10910  3.57724     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     28   3.52065  0.12024  3.56632  2.89230     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     29   3.16617  2.64439  3.21133  0.16666     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     30   3.16617  2.64439  3.21133  0.16666     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     31   2.99995  3.66446  0.10910  3.57724     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     32   3.16617  2.64439  3.21133  0.16666     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     33   0.13224  3.45644  2.85118  3.36541     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     34   3.16617  2.64439  3.21133  0.16666     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     35   3.52065  0.12024  3.56632  2.89230     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     36   0.13224  3.45644  2.85118  3.36541     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     37   2.99995  3.66446  0.10910  3.57724     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     38   3.16617  2.64439  3.21133  0.16666     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     39   2.99995  3.66446  0.10910  3.57724     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     40   3.16617  2.64439  3.21133  0.16666     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     41   3.52065  0.12024  3.56632  2.89230     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     42   3.16617  2.64439  3.21133  0.16666     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     43   2.99995  3.66446  0.10910  3.57724     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     44   3.16617  2.64439  3.21133  0.16666     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03527  4.05535  4.05535  1.46634  0.26236  1.09861  0.40547
+     45   0.13224  3.45644  2.85118  3.36541     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01779  4.03787        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_fortyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:10:52 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3214309007
+STATS LOCAL MSV       -7.9945  0.72035
+STATS LOCAL VITERBI   -7.7983  0.72035
+STATS LOCAL FORWARD   -3.8773  0.72035
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47802  1.26112  1.45372  1.36699
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_fortysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:10:44 2012
+NSEQ  7
+EFFN  3.284668
+CKSUM 3559013258
+STATS LOCAL MSV       -8.1480  0.71933
+STATS LOCAL VITERBI   -7.6244  0.71933
+STATS LOCAL FORWARD   -4.0846  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55436  1.38103  1.38462  1.24849
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00454  4.00454  1.46634  0.26236  0.00000        *
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+          0.03715  4.00454  4.00454  1.46634  0.26236  1.09861  0.40547
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+     45   0.14352  3.36802  2.79396  3.26852     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01875  3.98614        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_fortythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:10:12 2012
+NSEQ  9
+EFFN  3.256348
+CKSUM 1671317991
+STATS LOCAL MSV       -7.9243  0.71931
+STATS LOCAL VITERBI   -7.6584  0.71931
+STATS LOCAL FORWARD   -4.1486  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.48059  1.25640  1.45713  1.36682
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  0.00000        *
+      1   3.40835  0.13320  3.45885  2.81094      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      2   3.06699  2.58138  3.11596  0.18220      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      3   3.06699  2.58138  3.11596  0.18220      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      4   3.40835  0.13320  3.45885  2.81094      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      5   3.40835  0.13320  3.45885  2.81094      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      6   2.93249  3.56592  0.11958  3.46834      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      7   2.93249  3.56592  0.11958  3.46834      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      8   2.93249  3.56592  0.11958  3.46834      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      9   2.93249  3.56592  0.11958  3.46834      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     10   3.40835  0.13320  3.45885  2.81094     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     11   3.06699  2.58138  3.11596  0.18220     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     12   0.14476  3.35879  2.78795  3.25843     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     13   2.93249  3.56592  0.11958  3.46834     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     14   3.06699  2.58138  3.11596  0.18220     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     15   3.40835  0.13320  3.45885  2.81094     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     16   3.40835  0.13320  3.45885  2.81094     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     17   3.06699  2.58138  3.11596  0.18220     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     18   3.40835  0.13320  3.45885  2.81094     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     19   0.14476  3.35879  2.78795  3.25843     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     20   2.93249  3.56592  0.11958  3.46834     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     21   0.14476  3.35879  2.78795  3.25843     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     22   0.14476  3.35879  2.78795  3.25843     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     23   2.93249  3.56592  0.11958  3.46834     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     24   3.06699  2.58138  3.11596  0.18220     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     25   0.14476  3.35879  2.78795  3.25843     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     26   3.06699  2.58138  3.11596  0.18220     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     27   2.93249  3.56592  0.11958  3.46834     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     28   3.40835  0.13320  3.45885  2.81094     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     29   3.40835  0.13320  3.45885  2.81094     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     30   3.06699  2.58138  3.11596  0.18220     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     31   0.14476  3.35879  2.78795  3.25843     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     32   3.06699  2.58138  3.11596  0.18220     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     33   0.14476  3.35879  2.78795  3.25843     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     34   3.06699  2.58138  3.11596  0.18220     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     35   3.40835  0.13320  3.45885  2.81094     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     36   0.14476  3.35879  2.78795  3.25843     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     37   2.93249  3.56592  0.11958  3.46834     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     38   3.06699  2.58138  3.11596  0.18220     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     39   2.93249  3.56592  0.11958  3.46834     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     40   3.06699  2.58138  3.11596  0.18220     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     41   3.40835  0.13320  3.45885  2.81094     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     42   3.40835  0.13320  3.45885  2.81094     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     43   0.14476  3.35879  2.78795  3.25843     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     44   3.40835  0.13320  3.45885  2.81094     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     45   0.14476  3.35879  2.78795  3.25843     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01885  3.98087        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_fortytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:10:02 2012
+NSEQ  56
+EFFN  3.489746
+CKSUM 3007113563
+STATS LOCAL MSV       -7.3786  0.71931
+STATS LOCAL VITERBI   -7.7130  0.71931
+STATS LOCAL FORWARD   -3.9070  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.57617  1.20386  1.45121  1.35126
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  0.00000        *
+      1   3.49296  0.12329  3.53984  2.87236      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+      2   3.00468  2.30260  3.05601  0.21894      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+      3   3.14144  2.62870  3.18756  0.17039      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+      4   3.49296  0.12329  3.53984  2.87236      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+      5   2.19980  0.35082  2.44866  2.31613      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+      6   2.98348  3.64028  0.11157  3.55046      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+      7   2.98348  3.64028  0.11157  3.55046      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+      8   2.98348  3.64028  0.11157  3.55046      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+      9   2.98348  3.64028  0.11157  3.55046      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     10   3.49296  0.12329  3.53984  2.87236     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     11   3.14144  2.62870  3.18756  0.17039     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     12   0.39582  2.58117  2.40355  1.82764     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     13   2.98348  3.64028  0.11157  3.55046     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     14   3.14144  2.62870  3.18756  0.17039     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     15   3.49296  0.12329  3.53984  2.87236     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     16   3.49296  0.12329  3.53984  2.87236     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     17   3.14144  2.62870  3.18756  0.17039     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     18   3.49296  0.12329  3.53984  2.87236     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     19   0.13521  3.43229  2.83561  3.33893     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     20   2.98348  3.64028  0.11157  3.55046     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     21   0.13521  3.43229  2.83561  3.33893     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     22   0.17762  3.27654  2.48713  3.17414     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     23   2.98348  3.64028  0.11157  3.55046     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     24   3.14144  2.62870  3.18756  0.17039     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     25   0.13521  3.43229  2.83561  3.33893     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     26   3.14144  2.62870  3.18756  0.17039     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     27   2.98348  3.64028  0.11157  3.55046     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     28   3.32147  0.16079  3.37394  2.54878     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     29   3.49296  0.12329  3.53984  2.87236     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     30   3.14144  2.62870  3.18756  0.17039     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     31   3.49296  0.12329  3.53984  2.87236     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     32   3.14144  2.62870  3.18756  0.17039     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     33   0.13521  3.43229  2.83561  3.33893     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     34   3.14144  2.62870  3.18756  0.17039     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     35   3.49296  0.12329  3.53984  2.87236     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     36   0.13521  3.43229  2.83561  3.33893     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     37   2.98348  3.64028  0.11157  3.55046     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     38   3.14144  2.62870  3.18756  0.17039     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     39   2.98348  3.64028  0.11157  3.55046     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     40   3.14144  2.62870  3.18756  0.17039     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     41   3.49296  0.12329  3.53984  2.87236     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     42   3.49296  0.12329  3.53984  2.87236     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     43   0.13521  3.43229  2.83561  3.33893     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     44   3.49296  0.12329  3.53984  2.87236     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03578  4.04125  4.04125  1.46634  0.26236  1.09861  0.40547
+     45   0.13521  3.43229  2.83561  3.33893     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01805  4.02352        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:02:15 2012
+NSEQ  4
+EFFN  3.433594
+CKSUM 2731903192
+STATS LOCAL MSV       -7.2109  0.71932
+STATS LOCAL VITERBI   -7.7901  0.71932
+STATS LOCAL FORWARD   -4.0025  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82067  1.48906  1.25448  1.11695
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  0.00000        *
+      1   3.47324  0.12552  3.52097  2.85812      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      2   0.13738  3.41512  2.82452  3.32011      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      3   3.47324  0.12552  3.52097  2.85812      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      4   3.12394  2.61759  3.17074  0.17309      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      5   3.12394  2.61759  3.17074  0.17309      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      6   3.47324  0.12552  3.52097  2.85812      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      7   3.47324  0.12552  3.52097  2.85812      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      8   3.12394  2.61759  3.17074  0.17309      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      9   2.97169  3.62301  0.11337  3.53137      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     10   2.97169  3.62301  0.11337  3.53137     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     11   3.12394  2.61759  3.17074  0.17309     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     12   3.12394  2.61759  3.17074  0.17309     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     13   0.13738  3.41512  2.82452  3.32011     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     14   2.97169  3.62301  0.11337  3.53137     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     15   3.12394  2.61759  3.17074  0.17309     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     16   3.47324  0.12552  3.52097  2.85812     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     17   3.47324  0.12552  3.52097  2.85812     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     18   2.97169  3.62301  0.11337  3.53137     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     19   2.97169  3.62301  0.11337  3.53137     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     20   2.97169  3.62301  0.11337  3.53137     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     21   2.97169  3.62301  0.11337  3.53137     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     22   0.13738  3.41512  2.82452  3.32011     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     23   2.97169  3.62301  0.11337  3.53137     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     24   3.12394  2.61759  3.17074  0.17309     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     25   0.13738  3.41512  2.82452  3.32011     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     26   3.12394  2.61759  3.17074  0.17309     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     27   2.97169  3.62301  0.11337  3.53137     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     28   3.12394  2.61759  3.17074  0.17309     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     29   3.12394  2.61759  3.17074  0.17309     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     30   3.12394  2.61759  3.17074  0.17309     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     31   2.97169  3.62301  0.11337  3.53137     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     32   3.12394  2.61759  3.17074  0.17309     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     33   0.13738  3.41512  2.82452  3.32011     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     34   3.12394  2.61759  3.17074  0.17309     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     35   3.47324  0.12552  3.52097  2.85812     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     36   0.13738  3.41512  2.82452  3.32011     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     37   2.97169  3.62301  0.11337  3.53137     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     38   3.12394  2.61759  3.17074  0.17309     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     39   2.97169  3.62301  0.11337  3.53137     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     40   3.12394  2.61759  3.17074  0.17309     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     41   3.47324  0.12552  3.52097  2.85812     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     42   3.47324  0.12552  3.52097  2.85812     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     43   2.97169  3.62301  0.11337  3.53137     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     44   3.12394  2.61759  3.17074  0.17309     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     45   2.42512  0.95399  2.49696  0.81193     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01824  4.01342        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_fourteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:04:22 2012
+NSEQ  666
+EFFN  3.600014
+CKSUM 1820694249
+STATS LOCAL MSV       -7.3998  0.71932
+STATS LOCAL VITERBI   -7.7922  0.71932
+STATS LOCAL FORWARD   -3.9353  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62347  1.49044  1.32069  1.16937
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  0.00000        *
+      1   3.53055  0.11916  3.57577  2.89941      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+      2   0.13119  3.46507  2.85675  3.37489      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+      3   3.53055  0.11916  3.57577  2.89941      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+      4   3.17506  2.65002  3.21987  0.16535      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+      5   3.17506  2.65002  3.21987  0.16535      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+      6   2.68873  1.62150  2.75212  0.39953      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+      7   3.53055  0.11916  3.57577  2.89941      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+      8   3.00580  3.67309  0.10824  3.58679      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+      9   3.00580  3.67309  0.10824  3.58679      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     10   3.00580  3.67309  0.10824  3.58679     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     11   3.17506  2.65002  3.21987  0.16535     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     12   3.17506  2.65002  3.21987  0.16535     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     13   0.13119  3.46507  2.85675  3.37489     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     14   3.17506  2.65002  3.21987  0.16535     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     15   2.14190  3.19865  0.22835  3.08110     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     16   3.53055  0.11916  3.57577  2.89941     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     17   3.53055  0.11916  3.57577  2.89941     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     18   3.17506  2.65002  3.21987  0.16535     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     19   3.00580  3.67309  0.10824  3.58679     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     20   3.00580  3.67309  0.10824  3.58679     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     21   0.13119  3.46507  2.85675  3.37489     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     22   0.13119  3.46507  2.85675  3.37489     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     23   3.00580  3.67309  0.10824  3.58679     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     24   3.17506  2.65002  3.21987  0.16535     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     25   0.13119  3.46507  2.85675  3.37489     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     26   3.17506  2.65002  3.21987  0.16535     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     27   3.00580  3.67309  0.10824  3.58679     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     28   2.47202  1.08199  2.54257  0.69716     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     29   3.23344  0.18765  3.28879  2.36046     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     30   3.17506  2.65002  3.21987  0.16535     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     31   3.00580  3.67309  0.10824  3.58679     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     32   3.17506  2.65002  3.21987  0.16535     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     33   0.13119  3.46507  2.85675  3.37489     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     34   3.17506  2.65002  3.21987  0.16535     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     35   3.53055  0.11916  3.57577  2.89941     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     36   0.13119  3.46507  2.85675  3.37489     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     37   3.00580  3.67309  0.10824  3.58679     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     38   3.17506  2.65002  3.21987  0.16535     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     39   3.00580  3.67309  0.10824  3.58679     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     40   3.17506  2.65002  3.21987  0.16535     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     41   3.53055  0.11916  3.57577  2.89941     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     42   3.53055  0.11916  3.57577  2.89941     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     43   3.00580  3.67309  0.10824  3.58679     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     44   3.17506  2.65002  3.21987  0.16535     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03509  4.06044  4.06044  1.46634  0.26236  1.09861  0.40547
+     45   0.13119  3.46507  2.85675  3.37489     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01770  4.04305        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:03:24 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 954821854
+STATS LOCAL MSV       -7.3654  0.72822
+STATS LOCAL VITERBI   -8.3615  0.72822
+STATS LOCAL FORWARD   -3.4843  0.72822
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.51878  1.44901  1.31953  1.27670
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_nineteena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:05:33 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 583905888
+STATS LOCAL MSV       -7.3831  0.72833
+STATS LOCAL VITERBI   -8.4145  0.72833
+STATS LOCAL FORWARD   -3.4031  0.72833
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.58651  1.44473  1.32079  1.22885
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_nineteenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:05:40 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3878979993
+STATS LOCAL MSV       -7.4408  0.72801
+STATS LOCAL VITERBI   -8.1409  0.72801
+STATS LOCAL FORWARD   -3.5288  0.72801
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.58775  1.39261  1.26747  1.32560
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:01:47 2012
+NSEQ  54
+EFFN  3.529907
+CKSUM 4149572995
+STATS LOCAL MSV       -7.2722  0.71932
+STATS LOCAL VITERBI   -7.7867  0.71932
+STATS LOCAL FORWARD   -3.8680  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81840  1.55884  1.25178  1.07488
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  0.00000        *
+      1   3.50682  0.12175  3.55309  2.88235      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+      2   0.13371  3.44437  2.84341  3.35218      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+      3   3.50682  0.12175  3.55309  2.88235      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+      4   3.15380  2.63654  3.19944  0.16852      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+      5   3.15380  2.63654  3.19944  0.16852      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+      6   2.44135  0.91372  2.51314  0.84185      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+      7   3.50682  0.12175  3.55309  2.88235      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+      8   2.99173  3.65239  0.11033  3.56387      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+      9   2.99173  3.65239  0.11033  3.56387      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     10   2.99173  3.65239  0.11033  3.56387     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     11   3.15380  2.63654  3.19944  0.16852     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     12   3.15380  2.63654  3.19944  0.16852     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     13   0.13371  3.44437  2.84341  3.35218     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     14   2.99173  3.65239  0.11033  3.56387     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     15   3.15380  2.63654  3.19944  0.16852     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     16   3.50682  0.12175  3.55309  2.88235     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     17   3.50682  0.12175  3.55309  2.88235     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     18   3.15380  2.63654  3.19944  0.16852     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     19   2.99173  3.65239  0.11033  3.56387     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     20   2.99173  3.65239  0.11033  3.56387     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     21   2.99173  3.65239  0.11033  3.56387     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     22   0.13371  3.44437  2.84341  3.35218     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     23   2.99173  3.65239  0.11033  3.56387     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     24   3.15380  2.63654  3.19944  0.16852     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     25   0.13371  3.44437  2.84341  3.35218     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     26   3.15380  2.63654  3.19944  0.16852     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     27   2.99173  3.65239  0.11033  3.56387     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     28   3.03664  2.35237  3.08677  0.20923     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     29   3.15380  2.63654  3.19944  0.16852     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     30   3.15380  2.63654  3.19944  0.16852     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     31   2.99173  3.65239  0.11033  3.56387     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     32   3.15380  2.63654  3.19944  0.16852     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     33   0.13371  3.44437  2.84341  3.35218     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     34   3.15380  2.63654  3.19944  0.16852     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     35   3.50682  0.12175  3.55309  2.88235     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     36   0.13371  3.44437  2.84341  3.35218     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     37   2.99173  3.65239  0.11033  3.56387     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     38   3.15380  2.63654  3.19944  0.16852     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     39   2.99173  3.65239  0.11033  3.56387     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     40   2.75202  2.56380  3.02067  0.21020     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     41   3.50682  0.12175  3.55309  2.88235     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     42   3.50682  0.12175  3.55309  2.88235     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     43   2.99173  3.65239  0.11033  3.56387     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     44   3.15380  2.63654  3.19944  0.16852     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04828  4.04828  1.46634  0.26236  1.09861  0.40547
+     45   2.95621  2.17827  3.00957  0.24152     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01792  4.03068        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:03:02 2012
+NSEQ  7
+EFFN  3.421387
+CKSUM 3206112293
+STATS LOCAL MSV       -7.2541  0.71932
+STATS LOCAL VITERBI   -7.7079  0.71932
+STATS LOCAL FORWARD   -3.8333  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62856  1.44393  1.29816  1.22161
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  0.00000        *
+      1   3.46890  0.12602  3.51682  2.85498      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+      2   0.13786  3.41135  2.82208  3.31597      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+      3   3.46890  0.12602  3.51682  2.85498      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+      4   3.12010  2.61515  3.16705  0.17368      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+      5   3.12010  2.61515  3.16705  0.17368      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+      6   3.46890  0.12602  3.51682  2.85498      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+      7   3.46890  0.12602  3.51682  2.85498      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+      8   2.96909  3.61920  0.11378  3.52716      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+      9   2.96909  3.61920  0.11378  3.52716      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     10   2.96909  3.61920  0.11378  3.52716     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     11   3.12010  2.61515  3.16705  0.17368     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     12   3.12010  2.61515  3.16705  0.17368     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     13   0.13786  3.41135  2.82208  3.31597     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     14   2.96909  3.61920  0.11378  3.52716     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     15   3.12010  2.61515  3.16705  0.17368     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     16   3.46890  0.12602  3.51682  2.85498     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     17   3.46890  0.12602  3.51682  2.85498     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     18   3.12010  2.61515  3.16705  0.17368     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     19   2.96909  3.61920  0.11378  3.52716     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     20   2.96909  3.61920  0.11378  3.52716     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     21   0.13786  3.41135  2.82208  3.31597     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     22   0.13786  3.41135  2.82208  3.31597     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     23   2.96909  3.61920  0.11378  3.52716     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     24   3.12010  2.61515  3.16705  0.17368     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     25   0.13786  3.41135  2.82208  3.31597     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     26   3.12010  2.61515  3.16705  0.17368     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     27   2.96909  3.61920  0.11378  3.52716     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     28   3.46890  0.12602  3.51682  2.85498     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     29   3.46890  0.12602  3.51682  2.85498     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     30   3.12010  2.61515  3.16705  0.17368     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     31   2.96909  3.61920  0.11378  3.52716     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     32   3.12010  2.61515  3.16705  0.17368     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     33   0.13786  3.41135  2.82208  3.31597     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     34   3.12010  2.61515  3.16705  0.17368     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     35   3.46890  0.12602  3.51682  2.85498     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     36   0.13786  3.41135  2.82208  3.31597     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     37   2.96909  3.61920  0.11378  3.52716     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     38   3.12010  2.61515  3.16705  0.17368     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     39   2.96909  3.61920  0.11378  3.52716     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     40   3.12010  2.61515  3.16705  0.17368     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     41   3.46890  0.12602  3.51682  2.85498     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     42   2.96909  3.61920  0.11378  3.52716     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     43   2.12530  2.15195  1.15062  0.80318     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     44   3.12010  2.61515  3.16705  0.17368     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03623  4.02916  4.02916  1.46634  0.26236  1.09861  0.40547
+     45   0.13786  3.41135  2.82208  3.31597     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01828  4.01121        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_seventeen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:05:06 2012
+NSEQ  7
+EFFN  3.325684
+CKSUM 4279403002
+STATS LOCAL MSV       -8.1353  0.71933
+STATS LOCAL VITERBI   -7.7508  0.71933
+STATS LOCAL FORWARD   -4.0417  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63501  1.44343  1.38603  1.14298
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  0.00000        *
+      1   3.43422  0.13008  3.48363  2.82980      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      2   0.14177  3.38122  2.80255  3.28298      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      3   3.43422  0.13008  3.48363  2.82980      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      4   3.08958  2.59576  3.13770  0.17852      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      5   3.08958  2.59576  3.13770  0.17852      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      6   3.08958  2.59576  3.13770  0.17852      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      7   3.43422  0.13008  3.48363  2.82980      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      8   2.94820  3.58873  0.11705  3.49350      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+      9   2.94820  3.58873  0.11705  3.49350      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     10   2.94820  3.58873  0.11705  3.49350     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     11   3.08958  2.59576  3.13770  0.17852     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     12   3.08958  2.59576  3.13770  0.17852     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     13   3.43422  0.13008  3.48363  2.82980     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     14   3.08958  2.59576  3.13770  0.17852     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     15   0.14177  3.38122  2.80255  3.28298     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     16   3.43422  0.13008  3.48363  2.82980     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     17   3.43422  0.13008  3.48363  2.82980     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     18   3.08958  2.59576  3.13770  0.17852     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     19   2.94820  3.58873  0.11705  3.49350     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     20   2.94820  3.58873  0.11705  3.49350     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     21   0.14177  3.38122  2.80255  3.28298     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     22   0.14177  3.38122  2.80255  3.28298     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     23   2.94820  3.58873  0.11705  3.49350     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     24   3.08958  2.59576  3.13770  0.17852     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     25   0.14177  3.38122  2.80255  3.28298     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     26   3.08958  2.59576  3.13770  0.17852     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     27   2.94820  3.58873  0.11705  3.49350     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     28   3.08958  2.59576  3.13770  0.17852     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     29   3.43422  0.13008  3.48363  2.82980     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     30   3.08958  2.59576  3.13770  0.17852     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     31   2.94820  3.58873  0.11705  3.49350     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     32   3.08958  2.59576  3.13770  0.17852     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     33   0.14177  3.38122  2.80255  3.28298     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     34   3.08958  2.59576  3.13770  0.17852     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     35   3.43422  0.13008  3.48363  2.82980     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     36   0.14177  3.38122  2.80255  3.28298     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     37   2.94820  3.58873  0.11705  3.49350     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     38   3.08958  2.59576  3.13770  0.17852     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     39   2.94820  3.58873  0.11705  3.49350     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     40   3.08958  2.59576  3.13770  0.17852     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     41   3.43422  0.13008  3.48363  2.82980     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     42   3.43422  0.13008  3.48363  2.82980     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     43   2.94820  3.58873  0.11705  3.49350     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     44   3.08958  2.59576  3.13770  0.17852     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01199  4.01199  1.46634  0.26236  1.09861  0.40547
+     45   0.14177  3.38122  2.80255  3.28298     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01860  3.99373        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_sixa_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:02:43 2012
+NSEQ  61
+EFFN  3.503479
+CKSUM 1654444282
+STATS LOCAL MSV       -7.3075  0.71932
+STATS LOCAL VITERBI   -7.9016  0.71932
+STATS LOCAL FORWARD   -3.9539  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71253  1.45084  1.31464  1.14997
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  0.00000        *
+      1   3.49772  0.12276  3.54439  2.87580      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+      2   0.13470  3.43644  2.83829  3.34348      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+      3   3.49772  0.12276  3.54439  2.87580      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+      4   3.14568  2.63139  3.19163  0.16975      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+      5   3.14568  2.63139  3.19163  0.16975      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+      6   3.14568  2.63139  3.19163  0.16975      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+      7   3.49772  0.12276  3.54439  2.87580      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+      8   2.98632  3.64444  0.11114  3.55507      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+      9   2.98632  3.64444  0.11114  3.55507      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     10   2.98632  3.64444  0.11114  3.55507     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     11   3.14568  2.63139  3.19163  0.16975     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     12   3.14568  2.63139  3.19163  0.16975     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     13   0.13470  3.43644  2.83829  3.34348     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     14   2.98632  3.64444  0.11114  3.55507     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     15   3.14568  2.63139  3.19163  0.16975     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     16   3.49772  0.12276  3.54439  2.87580     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     17   3.49772  0.12276  3.54439  2.87580     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     18   3.14568  2.63139  3.19163  0.16975     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     19   2.98632  3.64444  0.11114  3.55507     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     20   2.98632  3.64444  0.11114  3.55507     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     21   0.13470  3.43644  2.83829  3.34348     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     22   0.13470  3.43644  2.83829  3.34348     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     23   2.98632  3.64444  0.11114  3.55507     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     24   3.14568  2.63139  3.19163  0.16975     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     25   0.13470  3.43644  2.83829  3.34348     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     26   3.14568  2.63139  3.19163  0.16975     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     27   2.98632  3.64444  0.11114  3.55507     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     28   2.60573  1.49842  2.67155  0.45646     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     29   3.49772  0.12276  3.54439  2.87580     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     30   3.14568  2.63139  3.19163  0.16975     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     31   2.98632  3.64444  0.11114  3.55507     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     32   3.14568  2.63139  3.19163  0.16975     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     33   0.13470  3.43644  2.83829  3.34348     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     34   3.14568  2.63139  3.19163  0.16975     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     35   3.49772  0.12276  3.54439  2.87580     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     36   0.13470  3.43644  2.83829  3.34348     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     37   2.98632  3.64444  0.11114  3.55507     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     38   3.14568  2.63139  3.19163  0.16975     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     39   2.98632  3.64444  0.11114  3.55507     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     40   3.14568  2.63139  3.19163  0.16975     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     41   3.49772  0.12276  3.54439  2.87580     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     42   3.49772  0.12276  3.54439  2.87580     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     43   2.98632  3.64444  0.11114  3.55507     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     44   3.14568  2.63139  3.19163  0.16975     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03570  4.04366  4.04366  1.46634  0.26236  1.09861  0.40547
+     45   1.86867  0.40815  2.56286  2.26621     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01801  4.02597        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_sixb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:02:50 2012
+NSEQ  102
+EFFN  3.296448
+CKSUM 2052102467
+STATS LOCAL MSV       -8.0385  0.71933
+STATS LOCAL VITERBI   -7.7229  0.71933
+STATS LOCAL FORWARD   -3.9548  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72566  1.31760  1.32137  1.24689
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  0.00000        *
+      1   3.42339  0.13137  3.47326  2.82191      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+      2   0.14301  3.37183  2.79644  3.27269      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+      3   3.42339  0.13137  3.47326  2.82191      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+      4   3.08010  2.58973  3.12858  0.18005      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+      5   3.08010  2.58973  3.12858  0.18005      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+      6   3.42339  0.13137  3.47326  2.82191      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+      7   3.42339  0.13137  3.47326  2.82191      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+      8   2.94164  3.57919  0.11810  3.48297      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+      9   2.94164  3.57919  0.11810  3.48297      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     10   2.94164  3.57919  0.11810  3.48297     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     11   3.08010  2.58973  3.12858  0.18005     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     12   3.08010  2.58973  3.12858  0.18005     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     13   3.42339  0.13137  3.47326  2.82191     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     14   2.94164  3.57919  0.11810  3.48297     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     15   3.08010  2.58973  3.12858  0.18005     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     16   3.42339  0.13137  3.47326  2.82191     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     17   3.42339  0.13137  3.47326  2.82191     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     18   3.08010  2.58973  3.12858  0.18005     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     19   2.94164  3.57919  0.11810  3.48297     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     20   2.94164  3.57919  0.11810  3.48297     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     21   0.14301  3.37183  2.79644  3.27269     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     22   0.14301  3.37183  2.79644  3.27269     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     23   2.94164  3.57919  0.11810  3.48297     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     24   3.08010  2.58973  3.12858  0.18005     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     25   0.14301  3.37183  2.79644  3.27269     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     26   3.08010  2.58973  3.12858  0.18005     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     27   2.94164  3.57919  0.11810  3.48297     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     28   3.30844  0.15686  3.36163  2.60466     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     29   3.23739  0.17438  3.29275  2.48169     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     30   3.08010  2.58973  3.12858  0.18005     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     31   2.94164  3.57919  0.11810  3.48297     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     32   3.08010  2.58973  3.12858  0.18005     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     33   0.14301  3.37183  2.79644  3.27269     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     34   3.08010  2.58973  3.12858  0.18005     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     35   3.42339  0.13137  3.47326  2.82191     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     36   0.14301  3.37183  2.79644  3.27269     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     37   2.94164  3.57919  0.11810  3.48297     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     38   3.08010  2.58973  3.12858  0.18005     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     39   2.94164  3.57919  0.11810  3.48297     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     40   3.08010  2.58973  3.12858  0.18005     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     41   3.42339  0.13137  3.47326  2.82191     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     42   3.42339  0.13137  3.47326  2.82191     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     43   2.94164  3.57919  0.11810  3.48297     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     44   3.08010  2.58973  3.12858  0.18005     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00669  4.00669  1.46634  0.26236  1.09861  0.40547
+     45   0.14301  3.37183  2.79644  3.27269     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01870  3.98833        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_sixteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:04:49 2012
+NSEQ  142
+EFFN  3.436462
+CKSUM 3135158707
+STATS LOCAL MSV       -7.3205  0.71932
+STATS LOCAL VITERBI   -7.7781  0.71932
+STATS LOCAL FORWARD   -3.9816  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.65337  1.32188  1.37654  1.23956
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  0.00000        *
+      1   3.47425  0.12541  3.52195  2.85885      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+      2   0.13726  3.41601  2.82509  3.32108      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+      3   3.47425  0.12541  3.52195  2.85885      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+      4   3.12484  2.61816  3.17160  0.17295      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+      5   3.12484  2.61816  3.17160  0.17295      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+      6   3.28557  0.16759  3.33927  2.50815      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+      7   3.47425  0.12541  3.52195  2.85885      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+      8   2.97230  3.62390  0.11328  3.53235      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+      9   2.97230  3.62390  0.11328  3.53235      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     10   2.97230  3.62390  0.11328  3.53235     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     11   3.12484  2.61816  3.17160  0.17295     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     12   3.12484  2.61816  3.17160  0.17295     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     13   0.13726  3.41601  2.82509  3.32108     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     14   3.12484  2.61816  3.17160  0.17295     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     15   2.98834  0.22123  2.76748  2.46186     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     16   3.47425  0.12541  3.52195  2.85885     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     17   3.47425  0.12541  3.52195  2.85885     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     18   3.12484  2.61816  3.17160  0.17295     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     19   2.97230  3.62390  0.11328  3.53235     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     20   2.97230  3.62390  0.11328  3.53235     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     21   0.33248  2.88183  1.81285  2.75452     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     22   0.13726  3.41601  2.82509  3.32108     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     23   2.97230  3.62390  0.11328  3.53235     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     24   3.12484  2.61816  3.17160  0.17295     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     25   0.13726  3.41601  2.82509  3.32108     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     26   3.12484  2.61816  3.17160  0.17295     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     27   2.97230  3.62390  0.11328  3.53235     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     28   3.28557  0.16759  3.33927  2.50815     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     29   3.47425  0.12541  3.52195  2.85885     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     30   3.12484  2.61816  3.17160  0.17295     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     31   2.97230  3.62390  0.11328  3.53235     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     32   3.12484  2.61816  3.17160  0.17295     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     33   0.13726  3.41601  2.82509  3.32108     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     34   3.12484  2.61816  3.17160  0.17295     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     35   3.47425  0.12541  3.52195  2.85885     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     36   0.13726  3.41601  2.82509  3.32108     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     37   2.97230  3.62390  0.11328  3.53235     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     38   3.12484  2.61816  3.17160  0.17295     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     39   2.97230  3.62390  0.11328  3.53235     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     40   3.12484  2.61816  3.17160  0.17295     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     41   3.47425  0.12541  3.52195  2.85885     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     42   3.47425  0.12541  3.52195  2.85885     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     43   2.97230  3.62390  0.11328  3.53235     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     44   3.12484  2.61816  3.17160  0.17295     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03613  4.03184  4.03184  1.46634  0.26236  1.09861  0.40547
+     45   0.13726  3.41601  2.82509  3.32108     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01823  4.01394        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_ten_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:03:33 2012
+NSEQ  54
+EFFN  3.470581
+CKSUM 1760084942
+STATS LOCAL MSV       -7.4293  0.71931
+STATS LOCAL VITERBI   -7.7359  0.71931
+STATS LOCAL FORWARD   -3.9826  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71129  1.36466  1.27266  1.25944
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  0.00000        *
+      1   3.48627  0.12404  3.53344  2.86754      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+      2   0.13594  3.42647  2.83185  3.33254      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+      3   3.48627  0.12404  3.53344  2.86754      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+      4   3.13549  2.62492  3.18184  0.17130      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+      5   2.60551  1.51324  2.67124  0.45134      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+      6   3.48627  0.12404  3.53344  2.86754      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+      7   3.48627  0.12404  3.53344  2.86754      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+      8   2.97949  3.63442  0.11218  3.54399      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+      9   2.97949  3.63442  0.11218  3.54399      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     10   2.97949  3.63442  0.11218  3.54399     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     11   3.13549  2.62492  3.18184  0.17130     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     12   3.13549  2.62492  3.18184  0.17130     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     13   0.13594  3.42647  2.83185  3.33254     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     14   2.97949  3.63442  0.11218  3.54399     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     15   3.13549  2.62492  3.18184  0.17130     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     16   3.48627  0.12404  3.53344  2.86754     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     17   3.48627  0.12404  3.53344  2.86754     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     18   3.13549  2.62492  3.18184  0.17130     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     19   2.97949  3.63442  0.11218  3.54399     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     20   2.97949  3.63442  0.11218  3.54399     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     21   2.10332  3.14365  0.24059  3.02289     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     22   0.13594  3.42647  2.83185  3.33254     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     23   2.27347  3.25435  0.20437  3.14004     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     24   3.13549  2.62492  3.18184  0.17130     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     25   0.13594  3.42647  2.83185  3.33254     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     26   3.13549  2.62492  3.18184  0.17130     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     27   2.97949  3.63442  0.11218  3.54399     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     28   3.48627  0.12404  3.53344  2.86754     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     29   3.48627  0.12404  3.53344  2.86754     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     30   3.13549  2.62492  3.18184  0.17130     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     31   2.97949  3.63442  0.11218  3.54399     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     32   3.13549  2.62492  3.18184  0.17130     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     33   0.13594  3.42647  2.83185  3.33254     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     34   3.13549  2.62492  3.18184  0.17130     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     35   3.48627  0.12404  3.53344  2.86754     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     36   0.13594  3.42647  2.83185  3.33254     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     37   2.81765  3.31135  0.16502  2.88403     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     38   3.13549  2.62492  3.18184  0.17130     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     39   2.97949  3.63442  0.11218  3.54399     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     40   3.13549  2.62492  3.18184  0.17130     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     41   3.48627  0.12404  3.53344  2.86754     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     42   3.48627  0.12404  3.53344  2.86754     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     43   2.97949  3.63442  0.11218  3.54399     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     44   3.13549  2.62492  3.18184  0.17130     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03788  4.03788  1.46634  0.26236  1.09861  0.40547
+     45   0.13594  3.42647  2.83185  3.33254     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01811  4.02008        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_thirteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:04:10 2012
+NSEQ  81
+EFFN  3.267883
+CKSUM 2455870292
+STATS LOCAL MSV       -8.1309  0.71934
+STATS LOCAL VITERBI   -7.7106  0.71934
+STATS LOCAL FORWARD   -4.0603  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72312  1.37867  1.25801  1.25400
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  0.00000        *
+      1   3.41270  0.13267  3.46301  2.81411      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+      2   0.14426  3.36256  2.79041  3.26255      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+      3   3.41270  0.13267  3.46301  2.81411      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+      4   3.07077  2.58379  3.11961  0.18158      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+      5   3.07077  2.58379  3.11961  0.18158      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+      6   3.41270  0.13267  3.46301  2.81411      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+      7   3.41270  0.13267  3.46301  2.81411      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+      8   2.93514  3.56976  0.11915  3.47257      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+      9   2.93514  3.56976  0.11915  3.47257      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     10   2.93514  3.56976  0.11915  3.47257     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     11   3.07077  2.58379  3.11961  0.18158     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     12   3.07077  2.58379  3.11961  0.18158     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     13   0.14426  3.36256  2.79041  3.26255     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     14   2.98399  2.37647  3.03577  0.21258     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     15   2.93514  3.56976  0.11915  3.47257     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     16   3.41270  0.13267  3.46301  2.81411     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     17   3.41270  0.13267  3.46301  2.81411     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     18   3.07077  2.58379  3.11961  0.18158     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     19   2.93514  3.56976  0.11915  3.47257     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     20   2.93514  3.56976  0.11915  3.47257     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     21   2.93514  3.56976  0.11915  3.47257     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     22   0.14426  3.36256  2.79041  3.26255     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     23   2.93514  3.56976  0.11915  3.47257     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     24   3.07077  2.58379  3.11961  0.18158     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     25   0.14426  3.36256  2.79041  3.26255     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     26   3.07077  2.58379  3.11961  0.18158     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     27   2.93514  3.56976  0.11915  3.47257     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     28   3.41270  0.13267  3.46301  2.81411     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     29   3.41270  0.13267  3.46301  2.81411     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     30   3.07077  2.58379  3.11961  0.18158     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     31   2.93514  3.56976  0.11915  3.47257     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     32   3.07077  2.58379  3.11961  0.18158     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     33   0.14426  3.36256  2.79041  3.26255     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     34   3.07077  2.58379  3.11961  0.18158     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     35   3.41270  0.13267  3.46301  2.81411     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     36   0.14426  3.36256  2.79041  3.26255     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     37   2.93514  3.56976  0.11915  3.47257     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     38   3.07077  2.58379  3.11961  0.18158     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     39   2.93514  3.56976  0.11915  3.47257     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     40   3.07077  2.58379  3.11961  0.18158     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     41   3.41270  0.13267  3.46301  2.81411     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     42   3.41270  0.13267  3.46301  2.81411     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     43   2.93514  3.56976  0.11915  3.47257     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     44   3.07077  2.58379  3.11961  0.18158     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03726  4.00148  4.00148  1.46634  0.26236  1.09861  0.40547
+     45   0.14426  3.36256  2.79041  3.26255     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01881  3.98302        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_thirty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:08:07 2012
+NSEQ  15
+EFFN  3.299561
+CKSUM 1307625746
+STATS LOCAL MSV       -8.0463  0.71932
+STATS LOCAL VITERBI   -7.8277  0.71932
+STATS LOCAL FORWARD   -4.0097  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.75107  1.25569  1.24967  1.36676
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  0.00000        *
+      1   0.14288  3.37283  2.79710  3.27379      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+      2   3.42454  0.13123  3.47436  2.82276      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+      3   3.08112  2.59037  3.12956  0.17989      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+      4   3.42454  0.13123  3.47436  2.82276      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+      5   3.42454  0.13123  3.47436  2.82276      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+      6   3.42454  0.13123  3.47436  2.82276      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+      7   2.94234  3.58021  0.11799  3.48410      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+      8   2.94234  3.58021  0.11799  3.48410      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+      9   2.94234  3.58021  0.11799  3.48410      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     10   3.08112  2.59037  3.12956  0.17989     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     11   3.08112  2.59037  3.12956  0.17989     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     12   3.42454  0.13123  3.47436  2.82276     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     13   0.42062  2.72717  1.59408  2.59210     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     14   2.94234  3.58021  0.11799  3.48410     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     15   3.42454  0.13123  3.47436  2.82276     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     16   3.42454  0.13123  3.47436  2.82276     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     17   3.08112  2.59037  3.12956  0.17989     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     18   3.42454  0.13123  3.47436  2.82276     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     19   2.94234  3.58021  0.11799  3.48410     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     20   2.94234  3.58021  0.11799  3.48410     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     21   2.94234  3.58021  0.11799  3.48410     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     22   0.14288  3.37283  2.79710  3.27379     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     23   2.94234  3.58021  0.11799  3.48410     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     24   3.08112  2.59037  3.12956  0.17989     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     25   0.14288  3.37283  2.79710  3.27379     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     26   3.08112  2.59037  3.12956  0.17989     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     27   2.94234  3.58021  0.11799  3.48410     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     28   3.42454  0.13123  3.47436  2.82276     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     29   3.42454  0.13123  3.47436  2.82276     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     30   3.08112  2.59037  3.12956  0.17989     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     31   2.94234  3.58021  0.11799  3.48410     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     32   3.08112  2.59037  3.12956  0.17989     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     33   0.14288  3.37283  2.79710  3.27379     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     34   3.08112  2.59037  3.12956  0.17989     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     35   3.42454  0.13123  3.47436  2.82276     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     36   0.14288  3.37283  2.79710  3.27379     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     37   2.94234  3.58021  0.11799  3.48410     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     38   3.08112  2.59037  3.12956  0.17989     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     39   2.94234  3.58021  0.11799  3.48410     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     40   3.08112  2.59037  3.12956  0.17989     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     41   3.42454  0.13123  3.47436  2.82276     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     42   3.42454  0.13123  3.47436  2.82276     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     43   2.94234  3.58021  0.11799  3.48410     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     44   3.08112  2.59037  3.12956  0.17989     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00725  4.00725  1.46634  0.26236  1.09861  0.40547
+     45   0.14288  3.37283  2.79710  3.27379     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01869  3.98890        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_thirtyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:09:27 2012
+NSEQ  32
+EFFN  3.347656
+CKSUM 3610209238
+STATS LOCAL MSV       -8.0410  0.71931
+STATS LOCAL VITERBI   -7.5823  0.71931
+STATS LOCAL FORWARD   -4.2622  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82826  1.23825  1.32178  1.26317
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  0.00000        *
+      1   3.44228  0.12912  3.49135  2.83567      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      2   3.09665  2.60026  3.14450  0.17739      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      3   3.09665  2.60026  3.14450  0.17739      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      4   3.44228  0.12912  3.49135  2.83567      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      5   3.44228  0.12912  3.49135  2.83567      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      6   2.95307  3.59583  0.11628  3.50134      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      7   2.95307  3.59583  0.11628  3.50134      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      8   2.95307  3.59583  0.11628  3.50134      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+      9   3.44228  0.12912  3.49135  2.83567      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     10   3.09665  2.60026  3.14450  0.17739     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     11   3.44228  0.12912  3.49135  2.83567     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     12   3.09665  2.60026  3.14450  0.17739     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     13   3.44228  0.12912  3.49135  2.83567     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     14   3.09665  2.60026  3.14450  0.17739     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     15   0.14085  3.38823  2.80709  3.29064     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     16   3.44228  0.12912  3.49135  2.83567     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     17   2.52787  1.40265  2.59570  0.51144     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     18   3.44228  0.12912  3.49135  2.83567     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     19   2.95307  3.59583  0.11628  3.50134     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     20   2.95307  3.59583  0.11628  3.50134     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     21   2.95307  3.59583  0.11628  3.50134     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     22   0.14085  3.38823  2.80709  3.29064     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     23   2.95307  3.59583  0.11628  3.50134     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     24   3.09665  2.60026  3.14450  0.17739     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     25   0.14085  3.38823  2.80709  3.29064     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     26   3.09665  2.60026  3.14450  0.17739     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     27   2.95307  3.59583  0.11628  3.50134     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     28   3.44228  0.12912  3.49135  2.83567     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     29   3.44228  0.12912  3.49135  2.83567     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     30   3.09665  2.60026  3.14450  0.17739     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     31   2.95307  3.59583  0.11628  3.50134     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     32   3.09665  2.60026  3.14450  0.17739     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     33   0.14085  3.38823  2.80709  3.29064     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     34   3.09665  2.60026  3.14450  0.17739     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     35   3.44228  0.12912  3.49135  2.83567     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     36   0.14085  3.38823  2.80709  3.29064     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     37   2.95307  3.59583  0.11628  3.50134     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     38   3.09665  2.60026  3.14450  0.17739     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     39   2.95307  3.59583  0.11628  3.50134     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     40   3.09665  2.60026  3.14450  0.17739     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     41   3.44228  0.12912  3.49135  2.83567     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     42   3.44228  0.12912  3.49135  2.83567     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     43   2.95307  3.59583  0.11628  3.50134     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     44   3.09665  2.60026  3.14450  0.17739     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
+     45   0.14085  3.38823  2.80709  3.29064     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01853  3.99777        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_thirtyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:08:49 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2498029638
+STATS LOCAL MSV       -7.4409  0.72903
+STATS LOCAL VITERBI   -8.4009  0.72903
+STATS LOCAL FORWARD   -3.3767  0.72903
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.51428  1.48093  1.37290  1.20652
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.15554  1.00938  2.23102  0.88601      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_thirtyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:08:38 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3688506537
+STATS LOCAL MSV       -7.4526  0.72833
+STATS LOCAL VITERBI   -8.4105  0.72833
+STATS LOCAL FORWARD   -3.4748  0.72833
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.58650  1.44503  1.32078  1.22863
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_thirtynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:09:38 2012
+NSEQ  9
+EFFN  3.370605
+CKSUM 1650032649
+STATS LOCAL MSV       -7.2507  0.71932
+STATS LOCAL VITERBI   -7.7539  0.71932
+STATS LOCAL FORWARD   -4.0767  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.50750  1.27850  1.23306  1.56693
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  0.00000        *
+      1   0.13990  3.39548  2.81180  3.29859      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+      2   3.45064  0.12814  3.49935  2.84174      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+      3   0.72078  2.53778  1.06916  2.39374      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+      4   0.13990  3.39548  2.81180  3.29859      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+      5   3.45064  0.12814  3.49935  2.84174      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+      6   3.45064  0.12814  3.49935  2.84174      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+      7   2.95812  3.60318  0.11549  3.50945      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+      8   2.95812  3.60318  0.11549  3.50945      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+      9   2.95812  3.60318  0.11549  3.50945      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     10   2.95812  3.60318  0.11549  3.50945     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     11   0.13990  3.39548  2.81180  3.29859     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     12   2.70591  0.39851  2.77457  1.61197     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     13   3.45064  0.12814  3.49935  2.84174     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     14   0.13990  3.39548  2.81180  3.29859     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     15   3.10400  2.60493  3.15157  0.17622     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     16   3.45064  0.12814  3.49935  2.84174     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     17   3.45064  0.12814  3.49935  2.84174     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     18   3.45064  0.12814  3.49935  2.84174     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     19   2.95812  3.60318  0.11549  3.50945     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     20   2.95812  3.60318  0.11549  3.50945     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     21   2.95812  3.60318  0.11549  3.50945     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     22   0.13990  3.39548  2.81180  3.29859     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     23   2.95812  3.60318  0.11549  3.50945     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     24   3.10400  2.60493  3.15157  0.17622     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     25   0.13990  3.39548  2.81180  3.29859     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     26   3.10400  2.60493  3.15157  0.17622     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     27   2.95812  3.60318  0.11549  3.50945     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     28   3.45064  0.12814  3.49935  2.84174     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     29   3.45064  0.12814  3.49935  2.84174     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     30   3.10400  2.60493  3.15157  0.17622     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     31   2.95812  3.60318  0.11549  3.50945     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     32   3.10400  2.60493  3.15157  0.17622     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     33   0.13990  3.39548  2.81180  3.29859     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     34   3.10400  2.60493  3.15157  0.17622     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     35   3.45064  0.12814  3.49935  2.84174     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     36   0.13990  3.39548  2.81180  3.29859     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     37   2.95812  3.60318  0.11549  3.50945     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     38   3.10400  2.60493  3.15157  0.17622     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     39   2.95812  3.60318  0.11549  3.50945     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     40   3.10400  2.60493  3.15157  0.17622     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     41   3.45064  0.12814  3.49935  2.84174     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     42   3.45064  0.12814  3.49935  2.84174     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     43   2.95812  3.60318  0.11549  3.50945     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     44   3.10400  2.60493  3.15157  0.17622     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03656  4.02009  4.02009  1.46634  0.26236  1.09861  0.40547
+     45   0.13990  3.39548  2.81180  3.29859     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01845  4.00197        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_thirtyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:09:16 2012
+NSEQ  7
+EFFN  3.298340
+CKSUM 3156643514
+STATS LOCAL MSV       -7.8856  0.71932
+STATS LOCAL VITERBI   -7.8119  0.71932
+STATS LOCAL FORWARD   -4.3505  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72989  1.31007  1.38906  1.19210
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  0.00000        *
+      1   3.42409  0.13129  3.47393  2.82243      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      2   3.08072  2.59012  3.12917  0.17995      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      3   3.08072  2.59012  3.12917  0.17995      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      4   3.42409  0.13129  3.47393  2.82243      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      5   3.08072  2.59012  3.12917  0.17995      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      6   2.94206  3.57981  0.11803  3.48366      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      7   2.94206  3.57981  0.11803  3.48366      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      8   2.94206  3.57981  0.11803  3.48366      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      9   3.42409  0.13129  3.47393  2.82243      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     10   3.08072  2.59012  3.12917  0.17995     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     11   3.42409  0.13129  3.47393  2.82243     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     12   3.08072  2.59012  3.12917  0.17995     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     13   3.42409  0.13129  3.47393  2.82243     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     14   3.08072  2.59012  3.12917  0.17995     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     15   0.14293  3.37244  2.79684  3.27336     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     16   3.42409  0.13129  3.47393  2.82243     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     17   3.08072  2.59012  3.12917  0.17995     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     18   3.42409  0.13129  3.47393  2.82243     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     19   0.14293  3.37244  2.79684  3.27336     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     20   2.94206  3.57981  0.11803  3.48366     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     21   2.94206  3.57981  0.11803  3.48366     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     22   0.14293  3.37244  2.79684  3.27336     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     23   2.94206  3.57981  0.11803  3.48366     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     24   3.08072  2.59012  3.12917  0.17995     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     25   0.14293  3.37244  2.79684  3.27336     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     26   3.08072  2.59012  3.12917  0.17995     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     27   2.94206  3.57981  0.11803  3.48366     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     28   3.42409  0.13129  3.47393  2.82243     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     29   3.42409  0.13129  3.47393  2.82243     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     30   3.08072  2.59012  3.12917  0.17995     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     31   2.94206  3.57981  0.11803  3.48366     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     32   3.08072  2.59012  3.12917  0.17995     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     33   0.14293  3.37244  2.79684  3.27336     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     34   3.08072  2.59012  3.12917  0.17995     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     35   3.42409  0.13129  3.47393  2.82243     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     36   0.14293  3.37244  2.79684  3.27336     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     37   2.94206  3.57981  0.11803  3.48366     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     38   3.08072  2.59012  3.12917  0.17995     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     39   2.94206  3.57981  0.11803  3.48366     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     40   3.08072  2.59012  3.12917  0.17995     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     41   3.42409  0.13129  3.47393  2.82243     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     42   3.42409  0.13129  3.47393  2.82243     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     43   2.94206  3.57981  0.11803  3.48366     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     44   3.08072  2.59012  3.12917  0.17995     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     45   0.14293  3.37244  2.79684  3.27336     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01870  3.98868        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_thirtysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:09:02 2012
+NSEQ  5
+EFFN  3.325195
+CKSUM 2741607073
+STATS LOCAL MSV       -8.1122  0.71933
+STATS LOCAL VITERBI   -7.8558  0.71933
+STATS LOCAL FORWARD   -4.0391  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54604  1.35561  1.25272  1.41307
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  0.00000        *
+      1   0.14179  3.38107  2.80245  3.28281      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      2   3.43404  0.13010  3.48346  2.82967      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      3   3.08942  2.59566  3.13755  0.17855      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      4   0.14179  3.38107  2.80245  3.28281      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      5   3.43404  0.13010  3.48346  2.82967      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      6   3.43404  0.13010  3.48346  2.82967      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      7   2.94809  3.58857  0.11707  3.49333      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      8   2.94809  3.58857  0.11707  3.49333      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      9   2.94809  3.58857  0.11707  3.49333      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     10   3.08942  2.59566  3.13755  0.17855     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     11   3.08942  2.59566  3.13755  0.17855     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     12   0.14179  3.38107  2.80245  3.28281     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     13   3.43404  0.13010  3.48346  2.82967     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     14   0.14179  3.38107  2.80245  3.28281     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     15   2.94809  3.58857  0.11707  3.49333     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     16   3.43404  0.13010  3.48346  2.82967     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     17   2.43340  0.73754  2.50592  1.04307     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     18   3.43404  0.13010  3.48346  2.82967     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     19   2.94809  3.58857  0.11707  3.49333     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     20   2.94809  3.58857  0.11707  3.49333     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     21   2.94809  3.58857  0.11707  3.49333     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     22   0.14179  3.38107  2.80245  3.28281     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     23   2.94809  3.58857  0.11707  3.49333     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     24   3.08942  2.59566  3.13755  0.17855     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     25   0.14179  3.38107  2.80245  3.28281     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     26   3.08942  2.59566  3.13755  0.17855     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     27   2.94809  3.58857  0.11707  3.49333     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     28   3.43404  0.13010  3.48346  2.82967     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     29   3.43404  0.13010  3.48346  2.82967     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     30   3.08942  2.59566  3.13755  0.17855     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     31   2.94809  3.58857  0.11707  3.49333     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     32   3.08942  2.59566  3.13755  0.17855     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     33   0.14179  3.38107  2.80245  3.28281     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     34   3.08942  2.59566  3.13755  0.17855     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     35   3.43404  0.13010  3.48346  2.82967     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     36   0.14179  3.38107  2.80245  3.28281     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     37   2.94809  3.58857  0.11707  3.49333     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     38   3.08942  2.59566  3.13755  0.17855     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     39   2.94809  3.58857  0.11707  3.49333     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     40   3.08942  2.59566  3.13755  0.17855     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     41   3.43404  0.13010  3.48346  2.82967     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     42   3.43404  0.13010  3.48346  2.82967     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     43   2.94809  3.58857  0.11707  3.49333     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     44   3.08942  2.59566  3.13755  0.17855     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     45   0.14179  3.38107  2.80245  3.28281     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01860  3.99364        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_thirtythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:08:25 2012
+NSEQ  6
+EFFN  3.377930
+CKSUM 3964629881
+STATS LOCAL MSV       -7.3148  0.71932
+STATS LOCAL VITERBI   -7.7351  0.71932
+STATS LOCAL FORWARD   -3.9782  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.70369  1.37651  1.27975  1.24680
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  0.00000        *
+      1   3.45329  0.12783  3.50189  2.84367      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      2   0.13960  3.39779  2.81330  3.30112      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      3   3.45329  0.12783  3.50189  2.84367      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      4   3.10634  2.60641  3.15381  0.17585      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      5   3.10634  2.60641  3.15381  0.17585      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      6   3.45329  0.12783  3.50189  2.84367      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      7   3.45329  0.12783  3.50189  2.84367      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      8   2.95971  3.60551  0.11524  3.51203      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+      9   2.95971  3.60551  0.11524  3.51203      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     10   2.95971  3.60551  0.11524  3.51203     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     11   3.10634  2.60641  3.15381  0.17585     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     12   3.10634  2.60641  3.15381  0.17585     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     13   0.13960  3.39779  2.81330  3.30112     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     14   2.95971  3.60551  0.11524  3.51203     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     15   3.10634  2.60641  3.15381  0.17585     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     16   3.45329  0.12783  3.50189  2.84367     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     17   3.45329  0.12783  3.50189  2.84367     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     18   3.10634  2.60641  3.15381  0.17585     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     19   2.95971  3.60551  0.11524  3.51203     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     20   2.95971  3.60551  0.11524  3.51203     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     21   1.35702  2.66681  0.52246  2.52523     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     22   0.13960  3.39779  2.81330  3.30112     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     23   2.95971  3.60551  0.11524  3.51203     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     24   3.10634  2.60641  3.15381  0.17585     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     25   0.13960  3.39779  2.81330  3.30112     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     26   3.10634  2.60641  3.15381  0.17585     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     27   2.95971  3.60551  0.11524  3.51203     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     28   3.45329  0.12783  3.50189  2.84367     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     29   3.45329  0.12783  3.50189  2.84367     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     30   3.10634  2.60641  3.15381  0.17585     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     31   2.95971  3.60551  0.11524  3.51203     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     32   3.10634  2.60641  3.15381  0.17585     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     33   0.13960  3.39779  2.81330  3.30112     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     34   3.10634  2.60641  3.15381  0.17585     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     35   3.45329  0.12783  3.50189  2.84367     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     36   0.13960  3.39779  2.81330  3.30112     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     37   2.95971  3.60551  0.11524  3.51203     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     38   3.10634  2.60641  3.15381  0.17585     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     39   2.95971  3.60551  0.11524  3.51203     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     40   3.10634  2.60641  3.15381  0.17585     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     41   3.45329  0.12783  3.50189  2.84367     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     42   3.45329  0.12783  3.50189  2.84367     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     43   2.95971  3.60551  0.11524  3.51203     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     44   3.10634  2.60641  3.15381  0.17585     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02140  4.02140  1.46634  0.26236  1.09861  0.40547
+     45   0.13960  3.39779  2.81330  3.30112     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01842  4.00331        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_thirtytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:08:16 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 674843736
+STATS LOCAL MSV       -8.1333  0.72019
+STATS LOCAL VITERBI   -7.8697  0.72019
+STATS LOCAL FORWARD   -3.9771  0.72019
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71592  1.26204  1.26107  1.37130
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.97980  2.52563  3.03204  0.19727     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   3.30705  0.14631  3.36166  2.73626     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.86982  3.47591  0.13017  3.36931     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.86982  3.47591  0.13017  3.36931     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:02:06 2012
+NSEQ  183
+EFFN  3.308945
+CKSUM 3389557377
+STATS LOCAL MSV       -7.9922  0.71932
+STATS LOCAL VITERBI   -7.8208  0.71932
+STATS LOCAL FORWARD   -3.8675  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81846  1.51995  1.19935  1.14693
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  0.00000        *
+      1   3.42803  0.13081  3.47770  2.82530      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+      2   0.14248  3.37586  2.79906  3.27710      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+      3   3.42803  0.13081  3.47770  2.82530      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+      4   3.08416  2.59231  3.13249  0.17939      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+      5   3.04267  2.48950  3.09234  0.19365      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+      6   3.42803  0.13081  3.47770  2.82530      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+      7   3.42803  0.13081  3.47770  2.82530      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+      8   2.94445  3.58328  0.11765  3.48749      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+      9   2.94445  3.58328  0.11765  3.48749      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     10   2.94445  3.58328  0.11765  3.48749     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     11   3.08416  2.59231  3.13249  0.17939     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     12   3.08416  2.59231  3.13249  0.17939     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     13   0.14248  3.37586  2.79906  3.27710     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     14   2.94445  3.58328  0.11765  3.48749     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     15   3.08416  2.59231  3.13249  0.17939     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     16   3.42803  0.13081  3.47770  2.82530     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     17   3.42803  0.13081  3.47770  2.82530     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     18   3.08416  2.59231  3.13249  0.17939     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     19   2.94445  3.58328  0.11765  3.48749     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     20   2.94445  3.58328  0.11765  3.48749     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     22   0.14248  3.37586  2.79906  3.27710     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     23   2.94445  3.58328  0.11765  3.48749     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     24   3.08416  2.59231  3.13249  0.17939     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     25   0.14248  3.37586  2.79906  3.27710     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     26   3.08416  2.59231  3.13249  0.17939     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     27   2.94445  3.58328  0.11765  3.48749     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     28   3.08416  2.59231  3.13249  0.17939     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     29   3.08416  2.59231  3.13249  0.17939     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     30   3.08416  2.59231  3.13249  0.17939     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     31   2.94445  3.58328  0.11765  3.48749     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     32   3.08416  2.59231  3.13249  0.17939     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     33   0.14248  3.37586  2.79906  3.27710     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     34   3.08416  2.59231  3.13249  0.17939     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     35   3.42803  0.13081  3.47770  2.82530     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     36   0.14248  3.37586  2.79906  3.27710     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     37   2.94445  3.58328  0.11765  3.48749     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     38   3.08416  2.59231  3.13249  0.17939     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     39   2.94445  3.58328  0.11765  3.48749     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     40   3.08416  2.59231  3.13249  0.17939     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     41   3.42803  0.13081  3.47770  2.82530     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     42   3.42803  0.13081  3.47770  2.82530     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     43   2.94445  3.58328  0.11765  3.48749     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     44   3.08416  2.59231  3.13249  0.17939     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00896  4.00896  1.46634  0.26236  1.09861  0.40547
+     45   2.75674  3.49488  0.13627  3.39495     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01866  3.99064        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_twelve_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:03:56 2012
+NSEQ  26
+EFFN  3.322998
+CKSUM 3952686333
+STATS LOCAL MSV       -8.0163  0.71932
+STATS LOCAL VITERBI   -7.8252  0.71932
+STATS LOCAL FORWARD   -4.0212  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63370  1.38786  1.31856  1.24596
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  0.00000        *
+      1   3.43323  0.13019  3.48268  2.82908      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+      2   0.14188  3.38036  2.80199  3.28204      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+      3   3.43323  0.13019  3.48268  2.82908      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+      4   3.08871  2.59521  3.13686  0.17866      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+      5   3.08871  2.59521  3.13686  0.17866      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+      6   3.43323  0.13019  3.48268  2.82908      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+      7   3.43323  0.13019  3.48268  2.82908      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+      8   2.94760  3.58786  0.11715  3.49254      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+      9   2.94760  3.58786  0.11715  3.49254      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     10   2.94760  3.58786  0.11715  3.49254     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     11   3.08871  2.59521  3.13686  0.17866     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     12   3.08871  2.59521  3.13686  0.17866     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     13   0.14188  3.38036  2.80199  3.28204     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     14   3.08871  2.59521  3.13686  0.17866     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     15   2.94760  3.58786  0.11715  3.49254     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     16   3.43323  0.13019  3.48268  2.82908     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     17   3.43323  0.13019  3.48268  2.82908     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     18   3.08871  2.59521  3.13686  0.17866     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     19   2.94760  3.58786  0.11715  3.49254     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     20   2.94760  3.58786  0.11715  3.49254     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     21   0.14188  3.38036  2.80199  3.28204     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     22   0.14188  3.38036  2.80199  3.28204     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     23   2.94760  3.58786  0.11715  3.49254     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     24   3.08871  2.59521  3.13686  0.17866     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     25   0.14188  3.38036  2.80199  3.28204     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     26   3.08871  2.59521  3.13686  0.17866     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     27   2.94760  3.58786  0.11715  3.49254     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     28   2.98523  0.25393  3.04770  2.06940     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     29   3.43323  0.13019  3.48268  2.82908     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     30   3.08871  2.59521  3.13686  0.17866     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     31   2.94760  3.58786  0.11715  3.49254     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     32   3.08871  2.59521  3.13686  0.17866     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     33   0.14188  3.38036  2.80199  3.28204     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     34   3.08871  2.59521  3.13686  0.17866     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     35   3.43323  0.13019  3.48268  2.82908     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     36   0.14188  3.38036  2.80199  3.28204     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     37   2.94760  3.58786  0.11715  3.49254     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     38   3.08871  2.59521  3.13686  0.17866     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     39   2.94760  3.58786  0.11715  3.49254     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     40   3.08871  2.59521  3.13686  0.17866     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     41   3.43323  0.13019  3.48268  2.82908     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     42   3.43323  0.13019  3.48268  2.82908     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     43   2.94760  3.58786  0.11715  3.49254     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     44   3.08871  2.59521  3.13686  0.17866     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01151  4.01151  1.46634  0.26236  1.09861  0.40547
+     45   0.14188  3.38036  2.80199  3.28204     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01861  3.99323        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_twenty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:05:57 2012
+NSEQ  11
+EFFN  3.305908
+CKSUM 4182302186
+STATS LOCAL MSV       -8.0713  0.71931
+STATS LOCAL VITERBI   -7.8599  0.71931
+STATS LOCAL FORWARD   -4.0666  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54970  1.52385  1.31655  1.19813
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  0.00000        *
+      1   3.42690  0.13095  3.47662  2.82448      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+      2   0.14261  3.37488  2.79843  3.27603      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+      3   3.42690  0.13095  3.47662  2.82448      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+      4   3.08318  2.59169  3.13154  0.17955      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+      5   3.08318  2.59169  3.13154  0.17955      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+      6   3.08318  2.59169  3.13154  0.17955      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+      7   3.42690  0.13095  3.47662  2.82448      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+      8   2.94377  3.58229  0.11776  3.48639      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+      9   2.94377  3.58229  0.11776  3.48639      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     10   2.94377  3.58229  0.11776  3.48639     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     11   3.08318  2.59169  3.13154  0.17955     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     12   3.08318  2.59169  3.13154  0.17955     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     13   0.14261  3.37488  2.79843  3.27603     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     14   2.94377  3.58229  0.11776  3.48639     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     15   0.14261  3.37488  2.79843  3.27603     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     16   3.42690  0.13095  3.47662  2.82448     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     17   3.42690  0.13095  3.47662  2.82448     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     18   3.08318  2.59169  3.13154  0.17955     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     19   2.94377  3.58229  0.11776  3.48639     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     20   2.94377  3.58229  0.11776  3.48639     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     21   0.14261  3.37488  2.79843  3.27603     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     22   0.14261  3.37488  2.79843  3.27603     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     23   2.94377  3.58229  0.11776  3.48639     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     24   3.08318  2.59169  3.13154  0.17955     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     25   0.14261  3.37488  2.79843  3.27603     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     26   3.08318  2.59169  3.13154  0.17955     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     27   2.94377  3.58229  0.11776  3.48639     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     28   3.08318  2.59169  3.13154  0.17955     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     29   3.42690  0.13095  3.47662  2.82448     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     30   3.08318  2.59169  3.13154  0.17955     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     31   2.94377  3.58229  0.11776  3.48639     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     32   3.08318  2.59169  3.13154  0.17955     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     33   0.14261  3.37488  2.79843  3.27603     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     34   3.08318  2.59169  3.13154  0.17955     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     35   3.42690  0.13095  3.47662  2.82448     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     36   0.14261  3.37488  2.79843  3.27603     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     37   2.94377  3.58229  0.11776  3.48639     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     38   3.08318  2.59169  3.13154  0.17955     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     39   2.94377  3.58229  0.11776  3.48639     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     40   3.08318  2.59169  3.13154  0.17955     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     41   3.42690  0.13095  3.47662  2.82448     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     42   3.42690  0.13095  3.47662  2.82448     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     43   2.94377  3.58229  0.11776  3.48639     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     44   3.08318  2.59169  3.13154  0.17955     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
+     45   0.14261  3.37488  2.79843  3.27603     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01867  3.99008        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_twentyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:07:41 2012
+NSEQ  14
+EFFN  3.394043
+CKSUM 293271894
+STATS LOCAL MSV       -7.3677  0.71932
+STATS LOCAL VITERBI   -7.7536  0.71932
+STATS LOCAL FORWARD   -3.9629  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.69978  1.37432  1.28686  1.24435
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  0.00000        *
+      1   3.45911  0.12715  3.50746  2.84789      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+      2   0.13895  3.40284  2.81657  3.30665      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+      3   3.45911  0.12715  3.50746  2.84789      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+      4   3.11146  2.60966  3.15874  0.17504      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+      5   3.11146  2.60966  3.15874  0.17504      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+      6   3.45911  0.12715  3.50746  2.84789      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+      7   3.45911  0.12715  3.50746  2.84789      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+      8   2.96321  3.61061  0.11469  3.51767      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.12979  4.02429  2.26489  1.46634  0.26236  1.09861  0.40547
+      9   2.84680  3.44327  0.13428  3.33352      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03990  3.93440  3.93440  1.46634  0.26236  0.29587  1.36212
+     10   2.96321  3.61061  0.11469  3.51767     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     11   3.11146  2.60966  3.15874  0.17504     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     12   3.11146  2.60966  3.15874  0.17504     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     13   0.13895  3.40284  2.81657  3.30665     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     14   2.96321  3.61061  0.11469  3.51767     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     15   3.11146  2.60966  3.15874  0.17504     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     16   3.45911  0.12715  3.50746  2.84789     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     17   3.45911  0.12715  3.50746  2.84789     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     18   3.11146  2.60966  3.15874  0.17504     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     19   2.96321  3.61061  0.11469  3.51767     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     20   2.96321  3.61061  0.11469  3.51767     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     21   1.27629  2.63263  0.56893  2.49000     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     22   0.13895  3.40284  2.81657  3.30665     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     23   2.96321  3.61061  0.11469  3.51767     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     24   3.11146  2.60966  3.15874  0.17504     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     25   0.13895  3.40284  2.81657  3.30665     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     26   3.11146  2.60966  3.15874  0.17504     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     27   2.96321  3.61061  0.11469  3.51767     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     28   3.45911  0.12715  3.50746  2.84789     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     29   3.45911  0.12715  3.50746  2.84789     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     30   3.11146  2.60966  3.15874  0.17504     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     31   2.96321  3.61061  0.11469  3.51767     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     32   3.11146  2.60966  3.15874  0.17504     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     33   0.13895  3.40284  2.81657  3.30665     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     34   3.11146  2.60966  3.15874  0.17504     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     35   3.45911  0.12715  3.50746  2.84789     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     36   0.13895  3.40284  2.81657  3.30665     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     37   2.96321  3.61061  0.11469  3.51767     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     38   3.11146  2.60966  3.15874  0.17504     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     39   2.96321  3.61061  0.11469  3.51767     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     40   3.11146  2.60966  3.15874  0.17504     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     41   3.45911  0.12715  3.50746  2.84789     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     42   3.45911  0.12715  3.50746  2.84789     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     43   2.96321  3.61061  0.11469  3.51767     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     44   3.11146  2.60966  3.15874  0.17504     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  1.09861  0.40547
+     45   0.13895  3.40284  2.81657  3.30665     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01837  4.00625        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_twentyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:07:06 2012
+NSEQ  75
+EFFN  3.364563
+CKSUM 324606330
+STATS LOCAL MSV       -8.1203  0.71931
+STATS LOCAL VITERBI   -7.8811  0.71931
+STATS LOCAL FORWARD   -4.0462  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55089  1.44302  1.39216  1.19340
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  0.00000        *
+      1   3.44845  0.12839  3.49725  2.84015      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+      2   0.14015  3.39358  2.81057  3.29651      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+      3   3.44845  0.12839  3.49725  2.84015      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+      4   3.10207  2.60370  3.14971  0.17652      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+      5   3.10207  2.60370  3.14971  0.17652      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+      6   3.10207  2.60370  3.14971  0.17652      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+      7   3.44845  0.12839  3.49725  2.84015      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+      8   2.95679  3.60125  0.11569  3.50732      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+      9   2.95679  3.60125  0.11569  3.50732      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     10   2.95679  3.60125  0.11569  3.50732     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     11   3.10207  2.60370  3.14971  0.17652     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     12   3.10207  2.60370  3.14971  0.17652     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     13   0.14015  3.39358  2.81057  3.29651     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     14   3.10207  2.60370  3.14971  0.17652     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     15   2.66646  2.59325  0.22085  2.92086     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     16   3.44845  0.12839  3.49725  2.84015     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     17   3.44845  0.12839  3.49725  2.84015     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     18   3.10207  2.60370  3.14971  0.17652     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     19   2.95679  3.60125  0.11569  3.50732     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     20   2.95679  3.60125  0.11569  3.50732     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     21   0.14015  3.39358  2.81057  3.29651     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     22   0.14015  3.39358  2.81057  3.29651     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     23   2.95679  3.60125  0.11569  3.50732     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     24   3.10207  2.60370  3.14971  0.17652     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     25   0.14015  3.39358  2.81057  3.29651     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     26   3.10207  2.60370  3.14971  0.17652     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     27   2.95679  3.60125  0.11569  3.50732     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     28   3.44845  0.12839  3.49725  2.84015     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     29   3.44845  0.12839  3.49725  2.84015     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     30   3.10207  2.60370  3.14971  0.17652     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     31   2.95679  3.60125  0.11569  3.50732     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     32   3.10207  2.60370  3.14971  0.17652     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     33   0.14015  3.39358  2.81057  3.29651     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     34   3.10207  2.60370  3.14971  0.17652     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     35   3.44845  0.12839  3.49725  2.84015     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     36   0.14015  3.39358  2.81057  3.29651     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     37   2.95679  3.60125  0.11569  3.50732     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     38   3.10207  2.60370  3.14971  0.17652     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     39   2.95679  3.60125  0.11569  3.50732     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     40   3.10207  2.60370  3.14971  0.17652     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     41   3.44845  0.12839  3.49725  2.84015     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     42   3.44845  0.12839  3.49725  2.84015     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     43   0.14015  3.39358  2.81057  3.29651     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     44   3.10207  2.60370  3.14971  0.17652     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03660  4.01900  4.01900  1.46634  0.26236  1.09861  0.40547
+     45   0.14015  3.39358  2.81057  3.29651     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01847  4.00087        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_twentyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:06:56 2012
+NSEQ  21
+EFFN  3.299194
+CKSUM 3016585621
+STATS LOCAL MSV       -8.1081  0.71931
+STATS LOCAL VITERBI   -7.7712  0.71931
+STATS LOCAL FORWARD   -4.2342  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63365  1.44741  1.31884  1.19680
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  0.00000        *
+      1   3.42441  0.13125  3.47423  2.82266      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+      2   0.14290  3.37271  2.79702  3.27366      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+      3   3.42441  0.13125  3.47423  2.82266      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+      4   3.08100  2.59030  3.12944  0.17991      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+      5   3.08100  2.59030  3.12944  0.17991      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+      6   3.08100  2.59030  3.12944  0.17991      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+      7   3.42441  0.13125  3.47423  2.82266      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+      8   2.94226  3.58009  0.11800  3.48397      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+      9   2.94226  3.58009  0.11800  3.48397      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     10   2.94226  3.58009  0.11800  3.48397     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     11   3.08100  2.59030  3.12944  0.17991     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     12   3.08100  2.59030  3.12944  0.17991     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     13   0.14290  3.37271  2.79702  3.27366     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     14   3.42441  0.13125  3.47423  2.82266     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     15   2.94226  3.58009  0.11800  3.48397     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     16   3.42441  0.13125  3.47423  2.82266     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     17   3.42441  0.13125  3.47423  2.82266     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     18   3.08100  2.59030  3.12944  0.17991     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     19   2.94226  3.58009  0.11800  3.48397     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     20   2.94226  3.58009  0.11800  3.48397     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     21   0.14290  3.37271  2.79702  3.27366     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     22   0.14290  3.37271  2.79702  3.27366     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     23   2.94226  3.58009  0.11800  3.48397     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     24   3.08100  2.59030  3.12944  0.17991     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     25   0.14290  3.37271  2.79702  3.27366     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     26   3.08100  2.59030  3.12944  0.17991     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     27   2.94226  3.58009  0.11800  3.48397     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     28   3.08100  2.59030  3.12944  0.17991     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     29   3.42441  0.13125  3.47423  2.82266     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     30   3.08100  2.59030  3.12944  0.17991     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     31   2.94226  3.58009  0.11800  3.48397     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     32   3.08100  2.59030  3.12944  0.17991     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     33   0.14290  3.37271  2.79702  3.27366     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     34   3.08100  2.59030  3.12944  0.17991     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     35   3.42441  0.13125  3.47423  2.82266     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     36   0.14290  3.37271  2.79702  3.27366     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     37   2.94226  3.58009  0.11800  3.48397     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     38   3.08100  2.59030  3.12944  0.17991     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     39   2.94226  3.58009  0.11800  3.48397     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     40   3.08100  2.59030  3.12944  0.17991     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     41   3.42441  0.13125  3.47423  2.82266     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     42   3.42441  0.13125  3.47423  2.82266     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     43   2.94226  3.58009  0.11800  3.48397     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     44   3.08100  2.59030  3.12944  0.17991     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00719  4.00719  1.46634  0.26236  1.09861  0.40547
+     45   0.14290  3.37271  2.79702  3.27366     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01869  3.98883        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_twentynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:07:52 2012
+NSEQ  4
+EFFN  3.253906
+CKSUM 2374311045
+STATS LOCAL MSV       -8.1024  0.71931
+STATS LOCAL VITERBI   -7.7728  0.71931
+STATS LOCAL FORWARD   -4.2920  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63428  1.31762  1.32060  1.30874
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  0.00000        *
+      1   0.14487  3.35799  2.78743  3.25755      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+      2   3.40742  0.13331  3.45796  2.81026      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+      3   3.06618  2.58087  3.11519  0.18233      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+      4   3.40742  0.13331  3.45796  2.81026      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+      5   3.40742  0.13331  3.45796  2.81026      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+      6   3.06618  2.58087  3.11519  0.18233      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+      7   2.93193  3.56511  0.11967  3.46744      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+      8   2.93193  3.56511  0.11967  3.46744      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+      9   2.93193  3.56511  0.11967  3.46744      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     10   3.06618  2.58087  3.11519  0.18233     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     11   3.06618  2.58087  3.11519  0.18233     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     12   3.40742  0.13331  3.45796  2.81026     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     13   0.14487  3.35799  2.78743  3.25755     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     14   2.93193  3.56511  0.11967  3.46744     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     15   3.40742  0.13331  3.45796  2.81026     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     16   3.40742  0.13331  3.45796  2.81026     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     17   3.06618  2.58087  3.11519  0.18233     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     18   3.40742  0.13331  3.45796  2.81026     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     19   0.14487  3.35799  2.78743  3.25755     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     20   2.93193  3.56511  0.11967  3.46744     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     21   2.93193  3.56511  0.11967  3.46744     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     22   0.14487  3.35799  2.78743  3.25755     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     23   2.93193  3.56511  0.11967  3.46744     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     24   3.06618  2.58087  3.11519  0.18233     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     25   0.14487  3.35799  2.78743  3.25755     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     26   3.06618  2.58087  3.11519  0.18233     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     27   2.93193  3.56511  0.11967  3.46744     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     28   3.40742  0.13331  3.45796  2.81026     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     29   3.40742  0.13331  3.45796  2.81026     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     30   3.06618  2.58087  3.11519  0.18233     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     31   2.93193  3.56511  0.11967  3.46744     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     32   3.06618  2.58087  3.11519  0.18233     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     33   0.14487  3.35799  2.78743  3.25755     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     34   3.06618  2.58087  3.11519  0.18233     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     35   3.40742  0.13331  3.45796  2.81026     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     36   0.14487  3.35799  2.78743  3.25755     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     37   2.93193  3.56511  0.11967  3.46744     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     38   3.06618  2.58087  3.11519  0.18233     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     39   2.93193  3.56511  0.11967  3.46744     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     40   3.06618  2.58087  3.11519  0.18233     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     41   3.40742  0.13331  3.45796  2.81026     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     42   3.40742  0.13331  3.45796  2.81026     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     43   2.93193  3.56511  0.11967  3.46744     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     44   3.06618  2.58087  3.11519  0.18233     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
+     45   0.14487  3.35799  2.78743  3.25755     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01885  3.98041        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_twentyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:06:07 2012
+NSEQ  7
+EFFN  3.298340
+CKSUM 246655704
+STATS LOCAL MSV       -8.1183  0.71932
+STATS LOCAL VITERBI   -7.9257  0.71932
+STATS LOCAL FORWARD   -4.0205  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63363  1.44741  1.31884  1.19681
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  0.00000        *
+      1   3.42409  0.13129  3.47393  2.82243      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      2   0.14293  3.37244  2.79684  3.27336      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      3   3.42409  0.13129  3.47393  2.82243      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      4   3.08072  2.59012  3.12917  0.17995      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      5   3.08072  2.59012  3.12917  0.17995      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      6   3.08072  2.59012  3.12917  0.17995      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      7   3.42409  0.13129  3.47393  2.82243      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      8   2.94206  3.57981  0.11803  3.48366      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+      9   2.94206  3.57981  0.11803  3.48366      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     10   2.94206  3.57981  0.11803  3.48366     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     11   3.08072  2.59012  3.12917  0.17995     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     12   3.08072  2.59012  3.12917  0.17995     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     13   0.14293  3.37244  2.79684  3.27336     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     14   3.08072  2.59012  3.12917  0.17995     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     15   2.94206  3.57981  0.11803  3.48366     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     16   3.42409  0.13129  3.47393  2.82243     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     17   3.42409  0.13129  3.47393  2.82243     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     18   3.08072  2.59012  3.12917  0.17995     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     19   2.94206  3.57981  0.11803  3.48366     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     20   2.94206  3.57981  0.11803  3.48366     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     21   0.14293  3.37244  2.79684  3.27336     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     22   0.14293  3.37244  2.79684  3.27336     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     23   2.94206  3.57981  0.11803  3.48366     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     24   3.08072  2.59012  3.12917  0.17995     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     25   0.14293  3.37244  2.79684  3.27336     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     26   3.08072  2.59012  3.12917  0.17995     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     27   2.94206  3.57981  0.11803  3.48366     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     28   3.42409  0.13129  3.47393  2.82243     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     29   3.42409  0.13129  3.47393  2.82243     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     30   3.08072  2.59012  3.12917  0.17995     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     31   2.94206  3.57981  0.11803  3.48366     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     32   3.08072  2.59012  3.12917  0.17995     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     33   0.14293  3.37244  2.79684  3.27336     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     34   3.08072  2.59012  3.12917  0.17995     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     35   3.42409  0.13129  3.47393  2.82243     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     36   0.14293  3.37244  2.79684  3.27336     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     37   2.94206  3.57981  0.11803  3.48366     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     38   3.08072  2.59012  3.12917  0.17995     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     39   2.94206  3.57981  0.11803  3.48366     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     40   3.08072  2.59012  3.12917  0.17995     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     41   3.42409  0.13129  3.47393  2.82243     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     42   3.42409  0.13129  3.47393  2.82243     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     43   2.94206  3.57981  0.11803  3.48366     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     44   3.08072  2.59012  3.12917  0.17995     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03705  4.00703  4.00703  1.46634  0.26236  1.09861  0.40547
+     45   0.14293  3.37244  2.79684  3.27336     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01870  3.98868        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_twentyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:07:27 2012
+NSEQ  90
+EFFN  3.331604
+CKSUM 115872449
+STATS LOCAL MSV       -8.0842  0.71933
+STATS LOCAL VITERBI   -7.7337  0.71933
+STATS LOCAL FORWARD   -3.8434  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55075  1.51971  1.38361  1.14425
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  0.00000        *
+      1   3.43640  0.12982  3.48571  2.83139      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+      2   0.14152  3.38312  2.80378  3.28505      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+      3   3.43640  0.12982  3.48571  2.83139      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+      4   3.09149  2.59697  3.13953  0.17821      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+      5   3.09149  2.59697  3.13953  0.17821      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+      6   3.09149  2.59697  3.13953  0.17821      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+      7   3.43640  0.12982  3.48571  2.83139      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+      8   2.94952  3.59065  0.11684  3.49562      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+      9   2.94952  3.59065  0.11684  3.49562      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     10   2.94952  3.59065  0.11684  3.49562     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     11   0.14152  3.38312  2.80378  3.28505     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     12   3.09149  2.59697  3.13953  0.17821     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     13   0.14152  3.38312  2.80378  3.28505     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     14   3.09149  2.59697  3.13953  0.17821     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     15   3.09149  2.59697  3.13953  0.17821     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     16   3.43640  0.12982  3.48571  2.83139     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     17   3.43640  0.12982  3.48571  2.83139     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     18   3.09149  2.59697  3.13953  0.17821     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     19   2.94952  3.59065  0.11684  3.49562     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     20   2.94952  3.59065  0.11684  3.49562     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     21   0.14152  3.38312  2.80378  3.28505     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     22   0.14152  3.38312  2.80378  3.28505     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     23   2.94952  3.59065  0.11684  3.49562     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     24   3.09149  2.59697  3.13953  0.17821     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     25   0.14152  3.38312  2.80378  3.28505     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     26   3.09149  2.59697  3.13953  0.17821     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     27   2.94952  3.59065  0.11684  3.49562     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     28   3.43640  0.12982  3.48571  2.83139     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     29   3.09149  2.59697  3.13953  0.17821     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     30   3.09149  2.59697  3.13953  0.17821     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     31   2.94952  3.59065  0.11684  3.49562     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     32   3.09149  2.59697  3.13953  0.17821     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     33   0.14152  3.38312  2.80378  3.28505     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     34   3.09149  2.59697  3.13953  0.17821     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     35   3.43640  0.12982  3.48571  2.83139     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     36   0.14152  3.38312  2.80378  3.28505     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     37   2.94952  3.59065  0.11684  3.49562     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     38   3.09149  2.59697  3.13953  0.17821     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     39   2.94952  3.59065  0.11684  3.49562     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     40   3.09149  2.59697  3.13953  0.17821     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     41   3.43640  0.12982  3.48571  2.83139     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     42   3.43640  0.12982  3.48571  2.83139     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     43   2.94952  3.59065  0.11684  3.49562     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     44   3.09149  2.59697  3.13953  0.17821     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     45   0.14152  3.38312  2.80378  3.28505     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01858  3.99482        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_twentysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:07:17 2012
+NSEQ  13
+EFFN  3.418213
+CKSUM 2570419389
+STATS LOCAL MSV       -7.4116  0.71933
+STATS LOCAL VITERBI   -7.6858  0.71933
+STATS LOCAL FORWARD   -3.9853  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71992  1.35545  1.29332  1.24226
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  0.00000        *
+      1   3.46776  0.12615  3.51574  2.85416      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+      2   0.13798  3.41037  2.82144  3.31490      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+      3   3.46776  0.12615  3.51574  2.85416      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+      4   3.11910  2.61452  3.16608  0.17384      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+      5   3.11910  2.61452  3.16608  0.17384      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+      6   3.46776  0.12615  3.51574  2.85416      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+      7   3.46776  0.12615  3.51574  2.85416      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+      8   2.96841  3.61821  0.11388  3.52606      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+      9   2.96841  3.61821  0.11388  3.52606      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     10   2.96841  3.61821  0.11388  3.52606     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     11   3.11910  2.61452  3.16608  0.17384     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     12   3.11910  2.61452  3.16608  0.17384     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     13   0.13798  3.41037  2.82144  3.31490     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     14   3.11910  2.61452  3.16608  0.17384     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     15   2.07897  1.10844  0.88982  2.00889     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     16   3.46776  0.12615  3.51574  2.85416     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     17   3.46776  0.12615  3.51574  2.85416     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     18   3.11910  2.61452  3.16608  0.17384     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     19   2.96841  3.61821  0.11388  3.52606     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     20   2.96841  3.61821  0.11388  3.52606     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     21   2.96841  3.61821  0.11388  3.52606     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     22   0.13798  3.41037  2.82144  3.31490     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     23   2.96841  3.61821  0.11388  3.52606     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     24   3.11910  2.61452  3.16608  0.17384     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     25   0.13798  3.41037  2.82144  3.31490     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     26   3.11910  2.61452  3.16608  0.17384     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     27   2.96841  3.61821  0.11388  3.52606     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     28   3.46776  0.12615  3.51574  2.85416     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     29   3.46776  0.12615  3.51574  2.85416     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     30   3.11910  2.61452  3.16608  0.17384     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     31   2.96841  3.61821  0.11388  3.52606     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     32   3.11910  2.61452  3.16608  0.17384     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     33   0.13798  3.41037  2.82144  3.31490     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     34   3.11910  2.61452  3.16608  0.17384     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     35   3.46776  0.12615  3.51574  2.85416     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     36   0.13798  3.41037  2.82144  3.31490     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     37   2.96841  3.61821  0.11388  3.52606     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     38   3.11910  2.61452  3.16608  0.17384     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     39   2.96841  3.61821  0.11388  3.52606     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     40   3.11910  2.61452  3.16608  0.17384     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     41   3.46776  0.12615  3.51574  2.85416     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     42   3.46776  0.12615  3.51574  2.85416     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     43   2.96841  3.61821  0.11388  3.52606     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     44   3.11910  2.61452  3.16608  0.17384     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02860  4.02860  1.46634  0.26236  1.09861  0.40547
+     45   0.13798  3.41037  2.82144  3.31490     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01829  4.01064        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_twentythreea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:06:37 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3990132220
+STATS LOCAL MSV       -7.2795  0.72829
+STATS LOCAL VITERBI   -8.2147  0.72829
+STATS LOCAL FORWARD   -3.3678  0.72829
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.52092  1.38736  1.37824  1.27392
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_twentythreeb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:06:43 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1038123167
+STATS LOCAL MSV       -7.5283  0.72812
+STATS LOCAL VITERBI   -8.2416  0.72812
+STATS LOCAL FORWARD   -3.4773  0.72812
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66011  1.38886  1.26865  1.27544
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_twentytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:06:18 2012
+NSEQ  26
+EFFN  3.246826
+CKSUM 2755268631
+STATS LOCAL MSV       -8.1324  0.71931
+STATS LOCAL VITERBI   -7.6607  0.71931
+STATS LOCAL FORWARD   -4.1374  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63309  1.38346  1.25712  1.31121
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  0.00000        *
+      1   3.40474  0.13364  3.45540  2.80830      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+      2   0.14519  3.35567  2.78592  3.25501      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+      3   3.40474  0.13364  3.45540  2.80830      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+      4   3.06385  2.57938  3.11295  0.18272      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+      5   3.06385  2.57938  3.11295  0.18272      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+      6   3.40474  0.13364  3.45540  2.80830      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+      7   3.40474  0.13364  3.45540  2.80830      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+      8   2.93029  3.56274  0.11993  3.46483      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+      9   2.93029  3.56274  0.11993  3.46483      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     10   2.93029  3.56274  0.11993  3.46483     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     11   3.06385  2.57938  3.11295  0.18272     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     12   3.06385  2.57938  3.11295  0.18272     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     13   0.14519  3.35567  2.78592  3.25501     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     14   0.14519  3.35567  2.78592  3.25501     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     15   2.93029  3.56274  0.11993  3.46483     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     16   3.40474  0.13364  3.45540  2.80830     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     17   3.40474  0.13364  3.45540  2.80830     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     18   3.06385  2.57938  3.11295  0.18272     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     19   2.93029  3.56274  0.11993  3.46483     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     20   2.93029  3.56274  0.11993  3.46483     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     21   2.93029  3.56274  0.11993  3.46483     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     22   0.14519  3.35567  2.78592  3.25501     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     23   2.93029  3.56274  0.11993  3.46483     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     24   3.06385  2.57938  3.11295  0.18272     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     25   0.14519  3.35567  2.78592  3.25501     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     26   3.06385  2.57938  3.11295  0.18272     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     27   2.93029  3.56274  0.11993  3.46483     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     28   3.40474  0.13364  3.45540  2.80830     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     29   3.40474  0.13364  3.45540  2.80830     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     30   3.06385  2.57938  3.11295  0.18272     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     31   2.93029  3.56274  0.11993  3.46483     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     32   3.06385  2.57938  3.11295  0.18272     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     33   0.14519  3.35567  2.78592  3.25501     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     34   3.06385  2.57938  3.11295  0.18272     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     35   3.40474  0.13364  3.45540  2.80830     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     36   0.14519  3.35567  2.78592  3.25501     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     37   2.93029  3.56274  0.11993  3.46483     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     38   3.06385  2.57938  3.11295  0.18272     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     39   2.93029  3.56274  0.11993  3.46483     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     40   3.06385  2.57938  3.11295  0.18272     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     41   3.40474  0.13364  3.45540  2.80830     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     42   3.40474  0.13364  3.45540  2.80830     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     43   2.93029  3.56274  0.11993  3.46483     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     44   3.06385  2.57938  3.11295  0.18272     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
+     45   0.14519  3.35567  2.78592  3.25501     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97909        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Oomycota_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 23 23:01:59 2012
+NSEQ  57
+EFFN  3.336365
+CKSUM 3639722455
+STATS LOCAL MSV       -8.0140  0.71933
+STATS LOCAL VITERBI   -7.9301  0.71933
+STATS LOCAL FORWARD   -3.8991  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72359  1.51656  1.31924  1.09431
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  0.00000        *
+      1   3.43814  0.12961  3.48739  2.83266      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+      2   0.14132  3.38463  2.80476  3.28671      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+      3   3.43814  0.12961  3.48739  2.83266      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+      4   3.09302  2.59795  3.14101  0.17797      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+      5   3.09302  2.59795  3.14101  0.17797      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+      6   3.09302  2.59795  3.14101  0.17797      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+      7   3.43814  0.12961  3.48739  2.83266      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+      8   2.95057  3.59219  0.11668  3.49732      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+      9   2.95057  3.59219  0.11668  3.49732      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     10   2.95057  3.59219  0.11668  3.49732     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     11   3.09302  2.59795  3.14101  0.17797     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     12   3.09302  2.59795  3.14101  0.17797     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     13   0.14132  3.38463  2.80476  3.28671     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     14   2.95057  3.59219  0.11668  3.49732     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     15   3.09302  2.59795  3.14101  0.17797     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     16   3.43814  0.12961  3.48739  2.83266     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     17   3.43814  0.12961  3.48739  2.83266     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     18   3.09302  2.59795  3.14101  0.17797     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     19   2.95057  3.59219  0.11668  3.49732     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     20   2.95057  3.59219  0.11668  3.49732     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     21   0.14132  3.38463  2.80476  3.28671     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     22   0.14132  3.38463  2.80476  3.28671     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     23   2.95057  3.59219  0.11668  3.49732     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     24   3.09302  2.59795  3.14101  0.17797     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     25   0.14132  3.38463  2.80476  3.28671     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     26   3.09302  2.59795  3.14101  0.17797     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     27   2.95057  3.59219  0.11668  3.49732     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     28   3.09302  2.59795  3.14101  0.17797     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     29   3.43814  0.12961  3.48739  2.83266     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     30   3.09302  2.59795  3.14101  0.17797     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     31   2.95057  3.59219  0.11668  3.49732     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     32   3.09302  2.59795  3.14101  0.17797     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     33   0.14132  3.38463  2.80476  3.28671     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     34   3.09302  2.59795  3.14101  0.17797     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     35   3.43814  0.12961  3.48739  2.83266     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     36   0.14132  3.38463  2.80476  3.28671     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     37   2.95057  3.59219  0.11668  3.49732     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     38   3.09302  2.59795  3.14101  0.17797     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     39   2.95057  3.59219  0.11668  3.49732     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     40   3.09302  2.59795  3.14101  0.17797     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     41   3.43814  0.12961  3.48739  2.83266     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     42   3.43814  0.12961  3.48739  2.83266     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     43   2.95057  3.59219  0.11668  3.49732     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     44   3.09302  2.59795  3.14101  0.17797     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     45   3.09302  2.59795  3.14101  0.17797     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01857  3.99570        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Oomycota_58S_start_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 21 16:23:27 2012
+NSEQ  5114
+EFFN  3.418840
+CKSUM 239509203
+STATS LOCAL MSV       -7.6678  0.71932
+STATS LOCAL VITERBI   -7.5309  0.71932
+STATS LOCAL FORWARD   -4.1743  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27860  1.38869  1.38454  1.50628
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  0.00000        *
+      1   3.07999  0.15785  3.32136  2.74956      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+      2   0.13796  3.41057  2.82158  3.31513      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+      3   0.13796  3.41057  2.82158  3.31513      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+      4   3.46800  0.12612  3.51597  2.85433      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+      5   3.11931  2.61465  3.16629  0.17381      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+      6   3.11931  2.61465  3.16629  0.17381      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+      7   3.11931  2.61465  3.16629  0.17381      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+      8   3.46800  0.12612  3.51597  2.85433      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+      9   0.13796  3.41057  2.82158  3.31513      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     10   2.30238  3.12456  0.21093  3.07504     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     11   3.46800  0.12612  3.51597  2.85433     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     12   0.14638  3.37765  2.74188  3.28091     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03634  4.02872  4.02329  1.46634  0.26236  1.09861  0.40547
+     13   2.96844  3.61825  0.11388  3.52611     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02862  4.02862  1.46634  0.26236  1.09500  0.40728
+     14   3.11931  2.61465  3.16629  0.17381     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     15   2.96856  3.61842  0.11386  3.52630     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     16   2.96856  3.61842  0.11386  3.52630     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     17   0.13796  3.41057  2.82158  3.31513     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     18   3.11931  2.61465  3.16629  0.17381     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     19   2.96856  3.61842  0.11386  3.52630     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03634  4.02872  4.02329  1.46634  0.26236  1.09861  0.40547
+     20   3.11914  2.61454  3.16612  0.17383     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02862  4.02862  1.46634  0.26236  1.09500  0.40728
+     21   3.37401  0.13987  3.32703  2.80717     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     22   3.11931  2.61465  3.16629  0.17381     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     23   0.16908  3.10776  2.74696  3.06335     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     24   2.96856  3.61842  0.11386  3.52630     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     25   2.96856  3.61842  0.11386  3.52630     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03644  4.02872  4.01789  1.46634  0.26236  1.09861  0.40547
+     26   3.46762  0.12617  3.51560  2.85405     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02852  4.02852  1.46634  0.26236  1.09141  0.40909
+     27   3.11931  2.61465  3.16629  0.17381     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     28   3.46800  0.12612  3.51597  2.85433     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     29   2.90845  3.33547  0.13232  3.38795     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     30   3.46800  0.12612  3.51597  2.85433     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     31   0.18894  3.05008  2.65115  2.91442     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     32   3.46800  0.12612  3.51597  2.85433     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     33   0.15609  3.17750  2.77808  3.20235     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     34   3.00786  2.34737  3.05892  0.21314     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     35   3.27541  0.14023  3.42390  2.80591     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     36   2.96856  3.61842  0.11386  3.52630     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     37   0.13796  3.41057  2.82158  3.31513     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     38   3.11931  2.61465  3.16629  0.17381     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03655  4.02872  4.01245  1.46634  0.26236  1.09861  0.40547
+     39   2.85717  3.56849  0.12400  3.47405     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02843  4.02843  1.46634  0.26236  1.08780  0.41092
+     40   0.15390  3.34924  2.67664  3.25104     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     41   0.13796  3.41057  2.82158  3.31513     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02872  4.01774  1.46634  0.26236  1.09861  0.40547
+     42   2.82175  3.55190  0.12751  3.45653     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03625  4.02852  4.02852  1.46634  0.26236  1.09131  0.40914
+     43   0.15287  3.35306  2.68523  3.25507     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     44   0.17216  3.12078  2.64919  3.13894     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03624  4.02872  4.02872  1.46634  0.26236  1.09861  0.40547
+     45   3.46800  0.12612  3.51597  2.85433     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01829  4.01076        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:03:30 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 243398462
+STATS LOCAL MSV       -7.8088  0.72045
+STATS LOCAL VITERBI   -7.7580  0.72045
+STATS LOCAL FORWARD   -4.0808  0.72045
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11500  1.46208  1.59571  1.43731
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
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+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_eleven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:03:58 2012
+NSEQ  18
+EFFN  3.247559
+CKSUM 2515016115
+STATS LOCAL MSV       -7.9395  0.71933
+STATS LOCAL VITERBI   -7.5658  0.71933
+STATS LOCAL FORWARD   -4.1596  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.10884  1.46713  1.51997  1.51071
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  0.00000        *
+      1   0.14515  3.35591  2.78608  3.25528      1 - -
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+      2   0.14515  3.35591  2.78608  3.25528      2 - -
+          1.38629  1.38629  1.38629  1.38629
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+      3   3.06409  2.57953  3.11318  0.18268      3 - -
+          1.38629  1.38629  1.38629  1.38629
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+      4   2.93046  3.56298  0.11991  3.46510      4 - -
+          1.38629  1.38629  1.38629  1.38629
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+      5   2.93046  3.56298  0.11991  3.46510      5 - -
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+          1.38629  1.38629  1.38629  1.38629
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+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     42   3.40502  0.13361  3.45566  2.80851     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     43   0.14515  3.35591  2.78608  3.25528     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     44   3.06409  2.57953  3.11318  0.18268     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
+     45   0.14515  3.35591  2.78608  3.25528     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97923        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_fifteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:04:46 2012
+NSEQ  25
+EFFN  3.445435
+CKSUM 249567624
+STATS LOCAL MSV       -7.6351  0.71932
+STATS LOCAL VITERBI   -7.6909  0.71932
+STATS LOCAL FORWARD   -4.1126  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.14410  1.39240  1.64908  1.42385
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  0.00000        *
+      1   3.12765  2.61995  3.17430  0.17251      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+      2   3.12765  2.61995  3.17430  0.17251      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+      3   3.12765  2.61995  3.17430  0.17251      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+      4   2.97420  3.62668  0.11299  3.53543      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+      5   2.97420  3.62668  0.11299  3.53543      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+      6   0.13691  3.41877  2.82688  3.32411      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+      7   3.47743  0.12504  3.52498  2.86115      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+      8   3.47743  0.12504  3.52498  2.86115      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+      9   3.12765  2.61995  3.17430  0.17251      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     10   2.97420  3.62668  0.11299  3.53543     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     11   0.13691  3.41877  2.82688  3.32411     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     12   3.12765  2.61995  3.17430  0.17251     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     13   0.13691  3.41877  2.82688  3.32411     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     14   3.12765  2.61995  3.17430  0.17251     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     15   3.47743  0.12504  3.52498  2.86115     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     16   0.13691  3.41877  2.82688  3.32411     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     17   1.11991  2.58251  0.67175  2.43851     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     18   0.13691  3.41877  2.82688  3.32411     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     19   3.47743  0.12504  3.52498  2.86115     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     20   0.13691  3.41877  2.82688  3.32411     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     21   0.13691  3.41877  2.82688  3.32411     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     22   2.97420  3.62668  0.11299  3.53543     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     23   0.13691  3.41877  2.82688  3.32411     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     24   3.14012  0.20787  3.19834  2.26738     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     25   3.12765  2.61995  3.17430  0.17251     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     26   0.13691  3.41877  2.82688  3.32411     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     27   3.47743  0.12504  3.52498  2.86115     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     28   3.47743  0.12504  3.52498  2.86115     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     29   3.47743  0.12504  3.52498  2.86115     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     30   2.97420  3.62668  0.11299  3.53543     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     31   3.47743  0.12504  3.52498  2.86115     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     32   3.12765  2.61995  3.17430  0.17251     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     33   2.97420  3.62668  0.11299  3.53543     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     34   0.13691  3.41877  2.82688  3.32411     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     35   0.13691  3.41877  2.82688  3.32411     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     36   3.47743  0.12504  3.52498  2.86115     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     37   3.12765  2.61995  3.17430  0.17251     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     38   3.12765  2.61995  3.17430  0.17251     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     39   0.13691  3.41877  2.82688  3.32411     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     40   0.13691  3.41877  2.82688  3.32411     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     41   2.97420  3.62668  0.11299  3.53543     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     42   3.47743  0.12504  3.52498  2.86115     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     43   3.12765  2.61995  3.17430  0.17251     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     44   0.13691  3.41877  2.82688  3.32411     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03343  4.03343  1.46634  0.26236  1.09861  0.40547
+     45   0.13691  3.41877  2.82688  3.32411     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01820  4.01556        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:03:08 2012
+NSEQ  195
+EFFN  3.406906
+CKSUM 2842362898
+STATS LOCAL MSV       -7.4635  0.71931
+STATS LOCAL VITERBI   -7.6657  0.71931
+STATS LOCAL FORWARD   -4.1200  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.15800  1.44691  1.51902  1.46247
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  0.00000        *
+      1   0.15762  3.33365  2.64821  3.23445      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+      2   3.06219  2.47949  3.11116  0.19252      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+      3   3.11553  2.61225  3.16265  0.17440      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+      4   2.96599  3.61467  0.11426  3.52215      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+      5   2.96599  3.61467  0.11426  3.52215      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+      6   0.13843  3.40685  2.81917  3.31105      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+      7   3.46372  0.12661  3.51187  2.85123      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+      8   3.46372  0.12661  3.51187  2.85123      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+      9   3.11553  2.61225  3.16265  0.17440      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     10   2.96599  3.61467  0.11426  3.52215     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     11   0.13843  3.40685  2.81917  3.31105     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     12   3.11553  2.61225  3.16265  0.17440     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     13   0.13843  3.40685  2.81917  3.31105     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     14   3.11553  2.61225  3.16265  0.17440     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     15   3.46372  0.12661  3.51187  2.85123     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     16   0.13843  3.40685  2.81917  3.31105     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     17   2.96599  3.61467  0.11426  3.52215     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     18   2.96599  3.61467  0.11426  3.52215     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     19   3.34656  0.15194  3.39831  2.62661     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     20   0.13843  3.40685  2.81917  3.31105     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     21   0.13843  3.40685  2.81917  3.31105     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     22   2.96599  3.61467  0.11426  3.52215     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     23   0.13843  3.40685  2.81917  3.31105     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     24   2.47249  1.22404  2.54227  0.61083     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     25   3.11553  2.61225  3.16265  0.17440     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     26   0.13843  3.40685  2.81917  3.31105     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     27   3.46372  0.12661  3.51187  2.85123     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     28   3.46372  0.12661  3.51187  2.85123     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     29   3.46372  0.12661  3.51187  2.85123     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     30   2.96599  3.61467  0.11426  3.52215     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     31   3.46372  0.12661  3.51187  2.85123     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     32   3.11553  2.61225  3.16265  0.17440     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     33   2.96599  3.61467  0.11426  3.52215     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     34   0.13843  3.40685  2.81917  3.31105     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     35   0.13843  3.40685  2.81917  3.31105     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     36   3.36436  0.14788  3.41555  2.65887     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     37   3.11553  2.61225  3.16265  0.17440     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     38   3.11553  2.61225  3.16265  0.17440     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     39   0.13843  3.40685  2.81917  3.31105     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     40   0.13843  3.40685  2.81917  3.31105     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     41   2.96599  3.61467  0.11426  3.52215     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     42   3.46372  0.12661  3.51187  2.85123     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     43   0.13843  3.40685  2.81917  3.31105     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     44   3.11553  2.61225  3.16265  0.17440     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03632  4.02658  4.02658  1.46634  0.26236  1.09861  0.40547
+     45   0.13843  3.40685  2.81917  3.31105     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01833  4.00859        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:02:57 2012
+NSEQ  31
+EFFN  3.424683
+CKSUM 287374859
+STATS LOCAL MSV       -7.5220  0.71933
+STATS LOCAL VITERBI   -7.5970  0.71933
+STATS LOCAL FORWARD   -4.1177  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.12153  1.40210  1.60169  1.48464
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  0.00000        *
+      1   0.44098  2.50108  2.35237  1.71785      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+      2   3.12114  2.61581  3.16804  0.17352      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+      3   3.12114  2.61581  3.16804  0.17352      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+      4   2.96979  3.62023  0.11367  3.52830      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+      5   2.96979  3.62023  0.11367  3.52830      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+      6   0.13773  3.41237  2.82274  3.31709      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+      7   3.47007  0.12588  3.51795  2.85583      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+      8   3.47007  0.12588  3.51795  2.85583      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+      9   3.12114  2.61581  3.16804  0.17352      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     10   2.96979  3.62023  0.11367  3.52830     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     11   0.13773  3.41237  2.82274  3.31709     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     12   3.12114  2.61581  3.16804  0.17352     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     13   0.13773  3.41237  2.82274  3.31709     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     14   3.12114  2.61581  3.16804  0.17352     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     15   3.47007  0.12588  3.51795  2.85583     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     16   0.13773  3.41237  2.82274  3.31709     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     17   2.96979  3.62023  0.11367  3.52830     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     18   0.13773  3.41237  2.82274  3.31709     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     19   3.47007  0.12588  3.51795  2.85583     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     20   0.13773  3.41237  2.82274  3.31709     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     21   0.13773  3.41237  2.82274  3.31709     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     22   2.96979  3.62023  0.11367  3.52830     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     23   0.13773  3.41237  2.82274  3.31709     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     24   2.87262  0.30798  2.93783  1.86084     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     25   3.12114  2.61581  3.16804  0.17352     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     26   0.13773  3.41237  2.82274  3.31709     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     27   3.47007  0.12588  3.51795  2.85583     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     28   3.47007  0.12588  3.51795  2.85583     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     29   3.47007  0.12588  3.51795  2.85583     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     30   2.96979  3.62023  0.11367  3.52830     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     31   3.47007  0.12588  3.51795  2.85583     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     32   3.12114  2.61581  3.16804  0.17352     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     33   2.96979  3.62023  0.11367  3.52830     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     34   0.13773  3.41237  2.82274  3.31709     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     35   0.13773  3.41237  2.82274  3.31709     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     36   3.47007  0.12588  3.51795  2.85583     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     37   3.12114  2.61581  3.16804  0.17352     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     38   3.12114  2.61581  3.16804  0.17352     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     39   0.13773  3.41237  2.82274  3.31709     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     40   0.13773  3.41237  2.82274  3.31709     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     41   2.96979  3.62023  0.11367  3.52830     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     42   3.47007  0.12588  3.51795  2.85583     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     43   0.13773  3.41237  2.82274  3.31709     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     44   3.12114  2.61581  3.16804  0.17352     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03621  4.02975  4.02975  1.46634  0.26236  1.09861  0.40547
+     45   0.13773  3.41237  2.82274  3.31709     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01827  4.01181        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_fourteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:04:36 2012
+NSEQ  25
+EFFN  3.244019
+CKSUM 208310769
+STATS LOCAL MSV       -8.0010  0.71932
+STATS LOCAL VITERBI   -7.6179  0.71932
+STATS LOCAL FORWARD   -4.1225  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16320  1.39502  1.52277  1.50697
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  0.00000        *
+      1   0.14531  3.35475  2.78532  3.25400      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+      2   3.06292  2.57879  3.11206  0.18287      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+      3   3.06292  2.57879  3.11206  0.18287      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+      4   2.92964  3.56180  0.12004  3.46379      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+      5   2.92964  3.56180  0.12004  3.46379      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+      6   0.14531  3.35475  2.78532  3.25400      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+      7   3.40368  0.13377  3.45438  2.80752      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+      8   3.40368  0.13377  3.45438  2.80752      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+      9   3.06292  2.57879  3.11206  0.18287      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     10   2.92964  3.56180  0.12004  3.46379     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     11   0.14531  3.35475  2.78532  3.25400     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     12   3.06292  2.57879  3.11206  0.18287     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     13   0.14531  3.35475  2.78532  3.25400     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     14   3.06292  2.57879  3.11206  0.18287     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     15   3.40368  0.13377  3.45438  2.80752     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     16   0.14531  3.35475  2.78532  3.25400     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     17   2.92964  3.56180  0.12004  3.46379     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     18   2.92964  3.56180  0.12004  3.46379     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     19   3.40368  0.13377  3.45438  2.80752     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     20   0.14531  3.35475  2.78532  3.25400     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     21   0.14531  3.35475  2.78532  3.25400     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     22   2.92964  3.56180  0.12004  3.46379     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     23   0.14531  3.35475  2.78532  3.25400     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     24   3.06292  2.57879  3.11206  0.18287     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     25   3.06292  2.57879  3.11206  0.18287     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     26   0.14531  3.35475  2.78532  3.25400     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     27   3.40368  0.13377  3.45438  2.80752     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     28   3.40368  0.13377  3.45438  2.80752     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     29   3.40368  0.13377  3.45438  2.80752     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     30   2.92964  3.56180  0.12004  3.46379     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     31   3.40368  0.13377  3.45438  2.80752     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     32   3.06292  2.57879  3.11206  0.18287     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     33   2.92964  3.56180  0.12004  3.46379     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     34   0.14531  3.35475  2.78532  3.25400     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     35   0.14531  3.35475  2.78532  3.25400     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     36   3.40368  0.13377  3.45438  2.80752     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     37   3.06292  2.57879  3.11206  0.18287     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     38   3.06292  2.57879  3.11206  0.18287     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     39   0.14531  3.35475  2.78532  3.25400     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     40   0.14531  3.35475  2.78532  3.25400     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     41   2.92964  3.56180  0.12004  3.46379     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     42   3.40368  0.13377  3.45438  2.80752     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     43   0.14531  3.35475  2.78532  3.25400     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     44   0.14531  3.35475  2.78532  3.25400     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03743  3.99710  3.99710  1.46634  0.26236  1.09861  0.40547
+     45   3.40368  0.13377  3.45438  2.80752     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01889  3.97856        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:03:40 2012
+NSEQ  19
+EFFN  3.251709
+CKSUM 1100350994
+STATS LOCAL MSV       -7.8849  0.71932
+STATS LOCAL VITERBI   -7.6655  0.71932
+STATS LOCAL FORWARD   -3.9906  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.10878  1.46608  1.52006  1.51180
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  0.00000        *
+      1   0.14497  3.35727  2.78696  3.25677      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+      2   0.14497  3.35727  2.78696  3.25677      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+      3   3.40659  0.13342  3.45717  2.80965      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+      4   2.93142  3.56437  0.11975  3.46663      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+      5   2.93142  3.56437  0.11975  3.46663      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+      6   0.14497  3.35727  2.78696  3.25677      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+      7   3.40659  0.13342  3.45717  2.80965      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+      8   3.40659  0.13342  3.45717  2.80965      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+      9   3.06546  2.58040  3.11450  0.18245      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     10   2.93142  3.56437  0.11975  3.46663     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     11   0.14497  3.35727  2.78696  3.25677     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     12   3.06546  2.58040  3.11450  0.18245     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     13   0.14497  3.35727  2.78696  3.25677     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     14   3.06546  2.58040  3.11450  0.18245     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     15   3.06546  2.58040  3.11450  0.18245     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     16   0.14497  3.35727  2.78696  3.25677     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     17   2.93142  3.56437  0.11975  3.46663     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     18   2.93142  3.56437  0.11975  3.46663     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     19   3.40659  0.13342  3.45717  2.80965     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     20   0.14497  3.35727  2.78696  3.25677     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     21   0.14497  3.35727  2.78696  3.25677     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     22   2.93142  3.56437  0.11975  3.46663     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     23   0.14497  3.35727  2.78696  3.25677     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     24   3.06546  2.58040  3.11450  0.18245     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     25   3.06546  2.58040  3.11450  0.18245     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     26   0.14497  3.35727  2.78696  3.25677     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     27   3.40659  0.13342  3.45717  2.80965     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     28   3.40659  0.13342  3.45717  2.80965     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     29   3.40659  0.13342  3.45717  2.80965     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     30   2.93142  3.56437  0.11975  3.46663     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     31   3.40659  0.13342  3.45717  2.80965     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     32   3.06546  2.58040  3.11450  0.18245     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     33   2.93142  3.56437  0.11975  3.46663     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     34   0.14497  3.35727  2.78696  3.25677     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     35   0.14497  3.35727  2.78696  3.25677     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     36   3.40659  0.13342  3.45717  2.80965     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     37   3.06546  2.58040  3.11450  0.18245     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     38   3.06546  2.58040  3.11450  0.18245     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     39   0.14497  3.35727  2.78696  3.25677     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     40   0.14497  3.35727  2.78696  3.25677     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     41   2.93142  3.56437  0.11975  3.46663     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     42   3.40659  0.13342  3.45717  2.80965     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     43   0.14497  3.35727  2.78696  3.25677     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     44   3.06546  2.58040  3.11450  0.18245     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99851  3.99851  1.46634  0.26236  1.09861  0.40547
+     45   0.14497  3.35727  2.78696  3.25677     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01886  3.98000        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:02:29 2012
+NSEQ  68
+EFFN  3.324463
+CKSUM 3362386651
+STATS LOCAL MSV       -7.8671  0.71933
+STATS LOCAL VITERBI   -7.7272  0.71933
+STATS LOCAL FORWARD   -3.9336  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11133  1.39673  1.69458  1.42796
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  0.00000        *
+      1   3.08918  2.59551  3.13732  0.17858      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+      2   3.08918  2.59551  3.13732  0.17858      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+      3   3.08918  2.59551  3.13732  0.17858      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+      4   2.94793  3.58833  0.11710  3.49306      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+      5   2.94793  3.58833  0.11710  3.49306      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+      6   0.14182  3.38083  2.80229  3.28255      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+      7   3.43377  0.13013  3.48320  2.82948      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+      8   3.43377  0.13013  3.48320  2.82948      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+      9   3.08918  2.59551  3.13732  0.17858      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     10   2.94793  3.58833  0.11710  3.49306     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     11   0.14182  3.38083  2.80229  3.28255     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     12   3.08918  2.59551  3.13732  0.17858     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     13   0.14182  3.38083  2.80229  3.28255     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     14   3.08918  2.59551  3.13732  0.17858     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     15   3.43377  0.13013  3.48320  2.82948     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     16   0.14182  3.38083  2.80229  3.28255     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     17   0.14182  3.38083  2.80229  3.28255     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     18   0.14182  3.38083  2.80229  3.28255     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     19   3.43377  0.13013  3.48320  2.82948     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     20   0.14182  3.38083  2.80229  3.28255     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     21   0.14182  3.38083  2.80229  3.28255     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     22   2.94793  3.58833  0.11710  3.49306     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     23   0.14182  3.38083  2.80229  3.28255     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     24   3.07417  0.22287  3.13428  2.20709     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     25   3.08918  2.59551  3.13732  0.17858     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     26   0.14182  3.38083  2.80229  3.28255     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     27   3.43377  0.13013  3.48320  2.82948     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     28   3.43377  0.13013  3.48320  2.82948     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     29   3.43377  0.13013  3.48320  2.82948     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     30   2.94793  3.58833  0.11710  3.49306     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     31   3.43377  0.13013  3.48320  2.82948     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     32   3.08918  2.59551  3.13732  0.17858     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     33   2.94793  3.58833  0.11710  3.49306     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     34   0.14182  3.38083  2.80229  3.28255     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     35   0.14182  3.38083  2.80229  3.28255     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     36   3.43377  0.13013  3.48320  2.82948     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     37   3.08918  2.59551  3.13732  0.17858     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     38   3.08918  2.59551  3.13732  0.17858     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     39   0.14182  3.38083  2.80229  3.28255     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     40   0.14182  3.38083  2.80229  3.28255     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     41   2.94793  3.58833  0.11710  3.49306     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     42   3.43377  0.13013  3.48320  2.82948     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     43   0.14182  3.38083  2.80229  3.28255     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     44   3.08918  2.59551  3.13732  0.17858     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01177  4.01177  1.46634  0.26236  1.09861  0.40547
+     45   0.14182  3.38083  2.80229  3.28255     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01861  3.99350        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:03:21 2012
+NSEQ  8
+EFFN  3.324219
+CKSUM 4152346698
+STATS LOCAL MSV       -8.0731  0.71933
+STATS LOCAL VITERBI   -7.6102  0.71933
+STATS LOCAL FORWARD   -4.1659  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.10749  1.61676  1.60160  1.31119
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  0.00000        *
+      1   0.14183  3.38076  2.80224  3.28247      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      2   3.08911  2.59546  3.13724  0.17860      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      3   3.08911  2.59546  3.13724  0.17860      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      4   2.94787  3.58826  0.11710  3.49298      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      5   2.94787  3.58826  0.11710  3.49298      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      6   0.14183  3.38076  2.80224  3.28247      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      7   3.43368  0.13014  3.48311  2.82941      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      8   3.43368  0.13014  3.48311  2.82941      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      9   3.08911  2.59546  3.13724  0.17860      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     10   2.94787  3.58826  0.11710  3.49298     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     11   0.14183  3.38076  2.80224  3.28247     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     12   3.08911  2.59546  3.13724  0.17860     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     13   0.14183  3.38076  2.80224  3.28247     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     14   3.08911  2.59546  3.13724  0.17860     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     15   3.43368  0.13014  3.48311  2.82941     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     16   0.14183  3.38076  2.80224  3.28247     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     17   0.14183  3.38076  2.80224  3.28247     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     18   2.94787  3.58826  0.11710  3.49298     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     19   3.08911  2.59546  3.13724  0.17860     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     20   0.14183  3.38076  2.80224  3.28247     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     21   0.14183  3.38076  2.80224  3.28247     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     22   2.94787  3.58826  0.11710  3.49298     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     23   0.14183  3.38076  2.80224  3.28247     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     24   3.08911  2.59546  3.13724  0.17860     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     25   3.08911  2.59546  3.13724  0.17860     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     26   0.14183  3.38076  2.80224  3.28247     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     27   3.43368  0.13014  3.48311  2.82941     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     28   3.43368  0.13014  3.48311  2.82941     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     29   3.43368  0.13014  3.48311  2.82941     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     30   2.94787  3.58826  0.11710  3.49298     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     31   3.43368  0.13014  3.48311  2.82941     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     32   3.08911  2.59546  3.13724  0.17860     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     33   2.94787  3.58826  0.11710  3.49298     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     34   0.14183  3.38076  2.80224  3.28247     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     35   0.14183  3.38076  2.80224  3.28247     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     36   3.08911  2.59546  3.13724  0.17860     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     37   3.08911  2.59546  3.13724  0.17860     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     38   3.08911  2.59546  3.13724  0.17860     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     39   0.14183  3.38076  2.80224  3.28247     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     40   0.14183  3.38076  2.80224  3.28247     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     41   2.94787  3.58826  0.11710  3.49298     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     42   3.43368  0.13014  3.48311  2.82941     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     43   0.14183  3.38076  2.80224  3.28247     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     44   3.08911  2.59546  3.13724  0.17860     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     45   0.14183  3.38076  2.80224  3.28247     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01861  3.99346        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:03:15 2012
+NSEQ  5
+EFFN  3.315430
+CKSUM 3218924662
+STATS LOCAL MSV       -8.1953  0.71933
+STATS LOCAL VITERBI   -7.6957  0.71933
+STATS LOCAL FORWARD   -4.0267  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.05857  1.53627  1.69177  1.37170
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  0.00000        *
+      1   0.14220  3.37794  2.80041  3.27938      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      2   3.08626  2.59365  3.13451  0.17906      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      3   3.08626  2.59365  3.13451  0.17906      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      4   0.14220  3.37794  2.80041  3.27938      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      5   2.94591  3.58540  0.11742  3.48982      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      6   0.14220  3.37794  2.80041  3.27938      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      7   3.43043  0.13053  3.48000  2.82705      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      8   3.43043  0.13053  3.48000  2.82705      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      9   3.08626  2.59365  3.13451  0.17906      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     10   2.94591  3.58540  0.11742  3.48982     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     11   0.14220  3.37794  2.80041  3.27938     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     12   3.08626  2.59365  3.13451  0.17906     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     13   0.14220  3.37794  2.80041  3.27938     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     14   3.08626  2.59365  3.13451  0.17906     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     15   3.43043  0.13053  3.48000  2.82705     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     16   0.14220  3.37794  2.80041  3.27938     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     17   0.14220  3.37794  2.80041  3.27938     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     18   2.94591  3.58540  0.11742  3.48982     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     19   3.43043  0.13053  3.48000  2.82705     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     20   0.14220  3.37794  2.80041  3.27938     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     21   0.14220  3.37794  2.80041  3.27938     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     22   2.94591  3.58540  0.11742  3.48982     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     23   0.14220  3.37794  2.80041  3.27938     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     24   3.08626  2.59365  3.13451  0.17906     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     25   3.08626  2.59365  3.13451  0.17906     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     26   0.14220  3.37794  2.80041  3.27938     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     27   3.43043  0.13053  3.48000  2.82705     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     28   3.43043  0.13053  3.48000  2.82705     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     29   3.43043  0.13053  3.48000  2.82705     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     30   2.94591  3.58540  0.11742  3.48982     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     31   3.43043  0.13053  3.48000  2.82705     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     32   3.08626  2.59365  3.13451  0.17906     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     33   2.94591  3.58540  0.11742  3.48982     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     34   0.14220  3.37794  2.80041  3.27938     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     35   0.14220  3.37794  2.80041  3.27938     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     36   3.08626  2.59365  3.13451  0.17906     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     37   3.08626  2.59365  3.13451  0.17906     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     38   3.08626  2.59365  3.13451  0.17906     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     39   0.14220  3.37794  2.80041  3.27938     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     40   0.14220  3.37794  2.80041  3.27938     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     41   2.94591  3.58540  0.11742  3.48982     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     42   3.43043  0.13053  3.48000  2.82705     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     43   0.14220  3.37794  2.80041  3.27938     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     44   3.08626  2.59365  3.13451  0.17906     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     45   0.14220  3.37794  2.80041  3.27938     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01864  3.99184        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_sixteena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:04:58 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 197893464
+STATS LOCAL MSV       -7.8866  0.72046
+STATS LOCAL VITERBI   -7.6374  0.72046
+STATS LOCAL FORWARD   -3.9677  0.72046
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22010  1.45900  1.51859  1.37314
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   0.15719  3.27118  2.73043  3.16274     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.86982  3.47591  0.13017  3.36931     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_sixteenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:05:04 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1405176074
+STATS LOCAL MSV       -7.8729  0.72043
+STATS LOCAL VITERBI   -7.7606  0.72043
+STATS LOCAL FORWARD   -4.1703  0.72043
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21871  1.53500  1.44288  1.37559
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.86982  3.47591  0.13017  3.36931     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_ten_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:03:49 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 199962319
+STATS LOCAL MSV       -7.9029  0.72024
+STATS LOCAL VITERBI   -7.5957  0.72024
+STATS LOCAL FORWARD   -4.0138  0.72024
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.11432  1.39839  1.51667  1.58267
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_thirteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:04:27 2012
+NSEQ  5
+EFFN  3.305664
+CKSUM 121944797
+STATS LOCAL MSV       -8.0146  0.71931
+STATS LOCAL VITERBI   -7.7479  0.71931
+STATS LOCAL FORWARD   -3.9997  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27539  1.45641  1.52589  1.30867
+          1.38629  1.38629  1.38629  1.38629
+          0.03700  4.00836  4.00836  1.46634  0.26236  0.00000        *
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+     45   0.14262  3.37480  2.79837  3.27595     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01867  3.99003        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:02:48 2012
+NSEQ  13
+EFFN  3.297607
+CKSUM 517071543
+STATS LOCAL MSV       -8.1345  0.71932
+STATS LOCAL VITERBI   -7.5842  0.71932
+STATS LOCAL FORWARD   -4.1111  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16392  1.45927  1.60535  1.36838
+          1.38629  1.38629  1.38629  1.38629
+          0.03706  4.00690  4.00690  1.46634  0.26236  0.00000        *
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+     42   3.42382  0.13132  3.47367  2.82223     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
+     43   0.14296  3.37220  2.79669  3.27310     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
+     44   3.08048  2.58997  3.12894  0.17999     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03706  4.00690  4.00690  1.46634  0.26236  1.09861  0.40547
+     45   0.14296  3.37220  2.79669  3.27310     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01870  3.98854        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_twelve_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:04:16 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1474323428
+STATS LOCAL MSV       -7.8855  0.72052
+STATS LOCAL VITERBI   -7.6818  0.72052
+STATS LOCAL FORWARD   -4.0882  0.72052
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16636  1.45838  1.59742  1.37250
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.97980  2.52563  3.03204  0.19727     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Oomycota_4_LSU_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Tue Jan 24 11:02:40 2012
+NSEQ  8
+EFFN  3.425781
+CKSUM 1590920301
+STATS LOCAL MSV       -7.4532  0.71932
+STATS LOCAL VITERBI   -7.5721  0.71932
+STATS LOCAL FORWARD   -4.2046  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.19206  1.45567  1.57364  1.36308
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  0.00000        *
+      1   3.12148  2.61603  3.16838  0.17347      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+      2   3.12148  2.61603  3.16838  0.17347      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+      3   3.12148  2.61603  3.16838  0.17347      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+      4   2.97003  3.62058  0.11363  3.52868      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+      5   2.97003  3.62058  0.11363  3.52868      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+      6   0.13768  3.41271  2.82296  3.31747      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+      7   3.47046  0.12584  3.51832  2.85611      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+      8   3.47046  0.12584  3.51832  2.85611      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+      9   3.12148  2.61603  3.16838  0.17347      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     10   2.97003  3.62058  0.11363  3.52868     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     11   0.13768  3.41271  2.82296  3.31747     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     12   3.12148  2.61603  3.16838  0.17347     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     13   0.13768  3.41271  2.82296  3.31747     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     14   3.12148  2.61603  3.16838  0.17347     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     15   3.47046  0.12584  3.51832  2.85611     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     16   0.13768  3.41271  2.82296  3.31747     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     17   0.85736  2.53227  0.90541  2.38746     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     18   2.97003  3.62058  0.11363  3.52868     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     19   3.12148  2.61603  3.16838  0.17347     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     20   0.13768  3.41271  2.82296  3.31747     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     21   0.13768  3.41271  2.82296  3.31747     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     22   2.97003  3.62058  0.11363  3.52868     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     23   0.13768  3.41271  2.82296  3.31747     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     24   3.47046  0.12584  3.51832  2.85611     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     25   3.12148  2.61603  3.16838  0.17347     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     26   0.13768  3.41271  2.82296  3.31747     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     27   3.47046  0.12584  3.51832  2.85611     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     28   3.47046  0.12584  3.51832  2.85611     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     29   3.47046  0.12584  3.51832  2.85611     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     30   2.97003  3.62058  0.11363  3.52868     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     31   3.47046  0.12584  3.51832  2.85611     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     32   3.12148  2.61603  3.16838  0.17347     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     33   2.97003  3.62058  0.11363  3.52868     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     34   0.13768  3.41271  2.82296  3.31747     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     35   0.13768  3.41271  2.82296  3.31747     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     36   3.47046  0.12584  3.51832  2.85611     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     37   3.12148  2.61603  3.16838  0.17347     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     38   3.12148  2.61603  3.16838  0.17347     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     39   0.13768  3.41271  2.82296  3.31747     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     40   0.13768  3.41271  2.82296  3.31747     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     41   2.97003  3.62058  0.11363  3.52868     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     42   3.47046  0.12584  3.51832  2.85611     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     43   0.13768  3.41271  2.82296  3.31747     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     44   3.12148  2.61603  3.16838  0.17347     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03620  4.02994  4.02994  1.46634  0.26236  1.09861  0.40547
+     45   0.13768  3.41271  2.82296  3.31747     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01826  4.01201        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Oomycota_1_SSU_end_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan 21 16:12:25 2012
+NSEQ  304
+EFFN  3.279541
+CKSUM 1893751502
+STATS LOCAL MSV       -8.0320  0.71934
+STATS LOCAL VITERBI   -7.6889  0.71934
+STATS LOCAL FORWARD   -4.1095  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27125  1.62696  1.24907  1.44298
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  0.00000        *
+      1   0.16236  3.29644  2.63327  3.19393      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+      2   2.68931  3.30870  0.16605  3.02614      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+      3   3.07459  2.58622  3.12328  0.18095      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+      4   3.41707  0.13214  3.46721  2.81731      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+      5   2.93780  3.57362  0.11872  3.47683      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+      6   3.07459  2.58622  3.12328  0.18095      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+      7   0.14375  3.36635  2.79288  3.26670      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+      8   0.14375  3.36635  2.79288  3.26670      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+      9   3.41707  0.13214  3.46721  2.81731      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     10   0.14375  3.36635  2.79288  3.26670     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     11   0.15678  3.31683  2.67806  3.21534     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     12   2.93780  3.57362  0.11872  3.47683     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     13   2.93780  3.57362  0.11872  3.47683     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     14   3.07459  2.58622  3.12328  0.18095     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     15   3.07459  2.58622  3.12328  0.18095     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     16   3.03126  2.47943  3.08134  0.19595     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     17   3.35118  0.14643  3.40314  2.68969     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     18   3.41707  0.13214  3.46721  2.81731     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     19   2.93780  3.57362  0.11872  3.47683     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     20   3.07459  2.58622  3.12328  0.18095     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     21   0.14375  3.36635  2.79288  3.26670     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.06604  4.00361  3.08663  1.46634  0.26236  1.09861  0.40547
+     22   2.90239  3.52248  0.12456  3.42049     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97582  3.97582  1.46634  0.26236  0.58748  0.81131
+     23   2.93780  3.57362  0.11872  3.47683     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     24   3.07459  2.58622  3.12328  0.18095     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     25   2.93780  3.57362  0.11872  3.47683     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     26   0.14375  3.36635  2.79288  3.26670     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     27   0.14375  3.36635  2.79288  3.26670     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.05071  4.00361  3.46743  1.46634  0.26236  1.09861  0.40547
+     28   3.39016  0.13545  3.44142  2.79762     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03768  3.99057  3.99057  1.46634  0.26236  0.77471  0.61774
+     29   3.41707  0.13214  3.46721  2.81731     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     30   3.07459  2.58622  3.12328  0.18095     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     31   2.93780  3.57362  0.11872  3.47683     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     32   3.41707  0.13214  3.46721  2.81731     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     33   2.93780  3.57362  0.11872  3.47683     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     34   2.93780  3.57362  0.11872  3.47683     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     35   0.14375  3.36635  2.79288  3.26670     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     36   0.14375  3.36635  2.79288  3.26670     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     37   2.93780  3.57362  0.11872  3.47683     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     38   2.93780  3.57362  0.11872  3.47683     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     39   0.14375  3.36635  2.79288  3.26670     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     40   3.07459  2.58622  3.12328  0.18095     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     41   3.41707  0.13214  3.46721  2.81731     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     42   0.14375  3.36635  2.79288  3.26670     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     43   3.07459  2.58622  3.12328  0.18095     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     44   3.07459  2.58622  3.12328  0.18095     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03718  4.00361  4.00361  1.46634  0.26236  1.09861  0.40547
+     45   0.14375  3.36635  2.79288  3.26670     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01876  3.98519        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/O.hmm.h3f
Binary file ITSx_db/HMMs/O.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/O.hmm.h3i
Binary file ITSx_db/HMMs/O.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/O.hmm.h3m
Binary file ITSx_db/HMMs/O.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/O.hmm.h3p
Binary file ITSx_db/HMMs/O.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/P.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/P.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,1550 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Haptophyceae_58S_end_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Jan 19 21:11:03 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2494581836
+STATS LOCAL MSV       -7.5772  0.72779
+STATS LOCAL VITERBI   -8.4466  0.72779
+STATS LOCAL FORWARD   -3.4217  0.72779
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.83092  1.23370  1.22080  1.37229
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.53331  3.02441  0.20344  2.88069     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Haptophyceae_58S_end_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Jan 19 21:10:55 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1644174705
+STATS LOCAL MSV       -7.4746  0.72790
+STATS LOCAL VITERBI   -8.3271  0.72790
+STATS LOCAL FORWARD   -3.4806  0.72790
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82891  1.28195  1.21975  1.32197
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.53331  3.02441  0.20344  2.88069     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Haptophyceae_58S_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Jan 19 21:10:31 2012
+NSEQ  17
+EFFN  3.357666
+CKSUM 4226331182
+STATS LOCAL MSV       -8.1825  0.71932
+STATS LOCAL VITERBI   -7.8281  0.71932
+STATS LOCAL FORWARD   -4.1005  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63377  1.51987  1.38406  1.09211
+          1.38629  1.38629  1.38629  1.38629
+          0.07416  4.01776  2.92835  1.46634  0.26236  0.00000        *
+      1   3.37150  0.13780  3.42352  2.78392      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03802  3.98163  3.98163  1.46634  0.26236  0.51452  0.91078
+      2   0.14043  3.39140  2.80915  3.29412      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+      3   3.09986  2.60230  3.14759  0.17687      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+      4   3.09986  2.60230  3.14759  0.17687      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+      5   3.09986  2.60230  3.14759  0.17687      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+      6   3.44594  0.12869  3.49485  2.83833      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+      7   3.44594  0.12869  3.49485  2.83833      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+      8   0.14043  3.39140  2.80915  3.29412      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+      9   0.14043  3.39140  2.80915  3.29412      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     10   2.95528  3.59904  0.11593  3.50489     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     11   3.09986  2.60230  3.14759  0.17687     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     12   3.09986  2.60230  3.14759  0.17687     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     13   3.09986  2.60230  3.14759  0.17687     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     14   3.44594  0.12869  3.49485  2.83833     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     15   2.95528  3.59904  0.11593  3.50489     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     16   3.44594  0.12869  3.49485  2.83833     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     17   3.09986  2.60230  3.14759  0.17687     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     18   3.09986  2.60230  3.14759  0.17687     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     19   2.95528  3.59904  0.11593  3.50489     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     20   2.95528  3.59904  0.11593  3.50489     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     21   0.14043  3.39140  2.80915  3.29412     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     22   0.14043  3.39140  2.80915  3.29412     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     23   2.95528  3.59904  0.11593  3.50489     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     24   3.09986  2.60230  3.14759  0.17687     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     25   0.14043  3.39140  2.80915  3.29412     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     26   3.09986  2.60230  3.14759  0.17687     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     27   2.95528  3.59904  0.11593  3.50489     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     28   3.09986  2.60230  3.14759  0.17687     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     29   3.09986  2.60230  3.14759  0.17687     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     30   3.44594  0.12869  3.49485  2.83833     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     31   3.44594  0.12869  3.49485  2.83833     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     32   3.09986  2.60230  3.14759  0.17687     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     33   3.09986  2.60230  3.14759  0.17687     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     34   3.44594  0.12869  3.49485  2.83833     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     35   2.95528  3.59904  0.11593  3.50489     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     36   0.14043  3.39140  2.80915  3.29412     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     37   2.95528  3.59904  0.11593  3.50489     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     38   3.09986  2.60230  3.14759  0.17687     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     39   2.95528  3.59904  0.11593  3.50489     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     40   2.95528  3.59904  0.11593  3.50489     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     41   0.14043  3.39140  2.80915  3.29412     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     42   2.95528  3.59904  0.11593  3.50489     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     43   3.09986  2.60230  3.14759  0.17687     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     44   3.09986  2.60230  3.14759  0.17687     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     45   3.44594  0.12869  3.49485  2.83833     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01849  3.99961        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Haptophyceae_58S_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Jan 19 21:10:47 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1952189013
+STATS LOCAL MSV       -7.3435  0.72833
+STATS LOCAL VITERBI   -8.3275  0.72833
+STATS LOCAL FORWARD   -3.1158  0.72833
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.02063  1.13480  1.20684  1.39919
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   1.89532  1.96405  1.06955  1.00436     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.53331  3.02441  0.20344  2.88069     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Haptophyceae_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Jan 19 21:10:39 2012
+NSEQ  4
+EFFN  3.167969
+CKSUM 386469025
+STATS LOCAL MSV       -8.0445  0.71933
+STATS LOCAL VITERBI   -7.7049  0.71933
+STATS LOCAL FORWARD   -4.0059  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.06060  1.09557  1.20633  1.43137
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  0.00000        *
+      1   3.37444  0.13743  3.42635  2.78609      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      2   2.91173  3.53592  0.12299  3.43528      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      3   3.37444  0.13743  3.42635  2.78609      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      4   3.03758  2.56263  3.08768  0.18713      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      5   3.03758  2.56263  3.08768  0.18713      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      6   2.91173  3.53592  0.12299  3.43528      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      7   3.37444  0.13743  3.42635  2.78609      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      8   2.91173  3.53592  0.12299  3.43528      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+      9   2.91173  3.53592  0.12299  3.43528      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     10   2.91173  3.53592  0.12299  3.43528     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     11   3.03758  2.56263  3.08768  0.18713     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     12   3.03758  2.56263  3.08768  0.18713     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     13   3.37444  0.13743  3.42635  2.78609     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     14   3.37444  0.13743  3.42635  2.78609     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     15   2.91173  3.53592  0.12299  3.43528     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     16   3.37444  0.13743  3.42635  2.78609     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     17   3.37444  0.13743  3.42635  2.78609     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     18   3.37444  0.13743  3.42635  2.78609     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     19   2.91173  3.53592  0.12299  3.43528     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     20   3.37444  0.13743  3.42635  2.78609     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     21   0.14880  3.32943  2.76878  3.22633     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     22   0.14880  3.32943  2.76878  3.22633     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     23   2.91173  3.53592  0.12299  3.43528     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     24   3.37444  0.13743  3.42635  2.78609     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     25   0.14880  3.32943  2.76878  3.22633     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     26   3.03758  2.56263  3.08768  0.18713     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     27   2.91173  3.53592  0.12299  3.43528     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     28   3.03758  2.56263  3.08768  0.18713     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     29   3.37444  0.13743  3.42635  2.78609     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     30   3.03758  2.56263  3.08768  0.18713     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     31   3.37444  0.13743  3.42635  2.78609     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     32   3.03758  2.56263  3.08768  0.18713     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     33   3.03758  2.56263  3.08768  0.18713     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     34   3.37444  0.13743  3.42635  2.78609     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     35   2.91173  3.53592  0.12299  3.43528     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     36   0.14880  3.32943  2.76878  3.22633     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     37   2.91173  3.53592  0.12299  3.43528     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     38   3.03758  2.56263  3.08768  0.18713     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     39   2.91173  3.53592  0.12299  3.43528     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     40   2.91173  3.53592  0.12299  3.43528     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     41   3.37444  0.13743  3.42635  2.78609     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     42   2.91173  3.53592  0.12299  3.43528     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     43   3.03758  2.56263  3.08768  0.18713     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     44   3.37444  0.13743  3.42635  2.78609     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
+     45   3.37444  0.13743  3.42635  2.78609     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01917  3.96423        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Haptophyceae_58S_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Oct  8 23:12:04 2011
+NSEQ  17
+EFFN  3.415771
+CKSUM 984267216
+STATS LOCAL MSV       -7.5702  0.71931
+STATS LOCAL VITERBI   -7.6889  0.71931
+STATS LOCAL FORWARD   -4.3391  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26671  1.28068  1.46004  1.56941
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  0.00000        *
+      1   3.46689  0.12625  3.51491  2.85353      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+      2   0.13808  3.40961  2.82095  3.31407      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+      3   0.13808  3.40961  2.82095  3.31407      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+      4   3.46689  0.12625  3.51491  2.85353      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+      5   3.11833  2.61403  3.16534  0.17396      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+      6   3.46689  0.12625  3.51491  2.85353      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+      7   3.46689  0.12625  3.51491  2.85353      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+      8   3.11833  2.61403  3.16534  0.17396      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+      9   2.42114  3.33331  0.17948  3.22383      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     10   3.11833  2.61403  3.16534  0.17396     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     11   3.46689  0.12625  3.51491  2.85353     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     12   2.96789  3.61745  0.11396  3.52522     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     13   0.13808  3.40961  2.82095  3.31407     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     14   0.13808  3.40961  2.82095  3.31407     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     15   2.96789  3.61745  0.11396  3.52522     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     16   2.96789  3.61745  0.11396  3.52522     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     17   0.13808  3.40961  2.82095  3.31407     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     18   3.11833  2.61403  3.16534  0.17396     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     19   0.13808  3.40961  2.82095  3.31407     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     20   3.11833  2.61403  3.16534  0.17396     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     21   3.46689  0.12625  3.51491  2.85353     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     22   3.11833  2.61403  3.16534  0.17396     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     23   3.11833  2.61403  3.16534  0.17396     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     24   2.67107  3.05829  0.22183  2.49130     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     25   2.96789  3.61745  0.11396  3.52522     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.07935  4.02816  2.83906  1.46634  0.26236  1.09861  0.40547
+     26   2.78802  0.26730  2.44352  2.45156     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03783  3.98664  3.98664  1.46634  0.26236  0.47560  0.97156
+     27   3.11833  2.61403  3.16534  0.17396     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     28   3.21286  0.18569  3.26887  2.39494     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     29   3.46689  0.12625  3.51491  2.85353     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     30   3.46689  0.12625  3.51491  2.85353     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     31   2.96789  3.61745  0.11396  3.52522     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     32   3.46689  0.12625  3.51491  2.85353     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     33   0.13808  3.40961  2.82095  3.31407     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     34   0.13808  3.40961  2.82095  3.31407     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     35   2.63508  0.21517  3.05648  2.59251     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     36   2.96789  3.61745  0.11396  3.52522     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     37   0.13808  3.40961  2.82095  3.31407     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     38   3.11833  2.61403  3.16534  0.17396     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     39   2.96789  3.61745  0.11396  3.52522     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     40   0.13808  3.40961  2.82095  3.31407     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     41   0.13808  3.40961  2.82095  3.31407     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     42   2.96789  3.61745  0.11396  3.52522     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     43   0.13808  3.40961  2.82095  3.31407     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     44   0.13808  3.40961  2.82095  3.31407     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03626  4.02816  4.02816  1.46634  0.26236  1.09861  0.40547
+     45   3.46689  0.12625  3.51491  2.85353     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01830  4.01020        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Haptophyceae_58S_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Oct  8 23:12:12 2011
+NSEQ  10
+EFFN  3.286133
+CKSUM 3298406165
+STATS LOCAL MSV       -8.1939  0.71932
+STATS LOCAL VITERBI   -7.5734  0.71932
+STATS LOCAL FORWARD   -4.1231  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.35247  1.26032  1.44611  1.50350
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  0.00000        *
+      1   3.41954  0.13184  3.46957  2.81911      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+      2   0.14346  3.36849  2.79427  3.26904      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+      3   0.14346  3.36849  2.79427  3.26904      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+      4   3.41954  0.13184  3.46957  2.81911      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+      5   3.07674  2.58759  3.12535  0.18060      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+      6   3.41954  0.13184  3.46957  2.81911      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+      7   3.41954  0.13184  3.46957  2.81911      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+      8   3.07674  2.58759  3.12535  0.18060      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+      9   2.93930  3.57580  0.11848  3.47923      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     10   3.41954  0.13184  3.46957  2.81911     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     11   3.41954  0.13184  3.46957  2.81911     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     12   2.93930  3.57580  0.11848  3.47923     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     13   0.14346  3.36849  2.79427  3.26904     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     14   3.07674  2.58759  3.12535  0.18060     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     15   2.93930  3.57580  0.11848  3.47923     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     16   2.93930  3.57580  0.11848  3.47923     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     17   0.14346  3.36849  2.79427  3.26904     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     18   3.07674  2.58759  3.12535  0.18060     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     19   0.14346  3.36849  2.79427  3.26904     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     20   3.07674  2.58759  3.12535  0.18060     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     21   3.41954  0.13184  3.46957  2.81911     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     22   3.07674  2.58759  3.12535  0.18060     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     23   3.07674  2.58759  3.12535  0.18060     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     24   2.93930  3.57580  0.11848  3.47923     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     25   2.93930  3.57580  0.11848  3.47923     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     26   3.41954  0.13184  3.46957  2.81911     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     27   3.07674  2.58759  3.12535  0.18060     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     28   3.41954  0.13184  3.46957  2.81911     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     29   3.07674  2.58759  3.12535  0.18060     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     30   3.41954  0.13184  3.46957  2.81911     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     31   2.93930  3.57580  0.11848  3.47923     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     32   3.41954  0.13184  3.46957  2.81911     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     33   0.14346  3.36849  2.79427  3.26904     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     34   0.33718  2.84959  1.81694  2.72072     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     35   3.41954  0.13184  3.46957  2.81911     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     36   2.93930  3.57580  0.11848  3.47923     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     37   0.14346  3.36849  2.79427  3.26904     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     38   3.07674  2.58759  3.12535  0.18060     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     39   2.93930  3.57580  0.11848  3.47923     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     40   0.14346  3.36849  2.79427  3.26904     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     41   0.14346  3.36849  2.79427  3.26904     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     42   2.93930  3.57580  0.11848  3.47923     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     43   0.14346  3.36849  2.79427  3.26904     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     44   0.14346  3.36849  2.79427  3.26904     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03714  4.00481  4.00481  1.46634  0.26236  1.09861  0.40547
+     45   3.41954  0.13184  3.46957  2.81911     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01874  3.98641        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Haptophyceae_4_LSU_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Oct  8 23:27:11 2011
+NSEQ  10
+EFFN  3.325195
+CKSUM 3619195996
+STATS LOCAL MSV       -7.9947  0.71933
+STATS LOCAL VITERBI   -7.6796  0.71933
+STATS LOCAL FORWARD   -4.1782  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21992  1.19976  1.63918  1.56380
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  0.00000        *
+      1   3.43404  0.13010  3.48346  2.82967      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      2   3.08942  2.59566  3.13755  0.17855      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      3   3.43404  0.13010  3.48346  2.82967      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      4   3.43404  0.13010  3.48346  2.82967      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      5   3.08942  2.59566  3.13755  0.17855      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      6   3.43404  0.13010  3.48346  2.82967      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      7   3.43404  0.13010  3.48346  2.82967      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      8   0.14179  3.38107  2.80245  3.28281      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      9   3.08942  2.59566  3.13755  0.17855      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     10   3.43404  0.13010  3.48346  2.82967     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     11   2.94809  3.58857  0.11707  3.49333     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     12   0.14179  3.38107  2.80245  3.28281     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     13   0.14179  3.38107  2.80245  3.28281     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     14   3.08942  2.59566  3.13755  0.17855     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     15   2.94809  3.58857  0.11707  3.49333     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     16   2.94809  3.58857  0.11707  3.49333     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     17   0.14179  3.38107  2.80245  3.28281     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     18   2.33674  2.54426  0.42594  1.76216     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     19   3.43404  0.13010  3.48346  2.82967     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     20   0.14179  3.38107  2.80245  3.28281     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     21   0.14179  3.38107  2.80245  3.28281     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     22   2.94809  3.58857  0.11707  3.49333     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     23   0.14179  3.38107  2.80245  3.28281     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     24   3.43404  0.13010  3.48346  2.82967     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     25   3.08942  2.59566  3.13755  0.17855     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     26   0.14179  3.38107  2.80245  3.28281     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     27   3.43404  0.13010  3.48346  2.82967     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     28   3.43404  0.13010  3.48346  2.82967     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     29   3.43404  0.13010  3.48346  2.82967     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     30   2.94809  3.58857  0.11707  3.49333     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     31   3.43404  0.13010  3.48346  2.82967     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     32   3.08942  2.59566  3.13755  0.17855     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     33   2.94809  3.58857  0.11707  3.49333     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     34   0.14179  3.38107  2.80245  3.28281     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     35   0.14179  3.38107  2.80245  3.28281     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     36   3.43404  0.13010  3.48346  2.82967     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     37   3.08942  2.59566  3.13755  0.17855     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     38   3.08942  2.59566  3.13755  0.17855     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     39   0.14179  3.38107  2.80245  3.28281     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     40   0.14179  3.38107  2.80245  3.28281     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     41   2.94809  3.58857  0.11707  3.49333     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     42   3.43404  0.13010  3.48346  2.82967     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     43   0.14179  3.38107  2.80245  3.28281     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     44   3.08942  2.59566  3.13755  0.17855     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     45   0.14179  3.38107  2.80245  3.28281     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01860  3.99364        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Haptophyceae_4_LSU_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Oct  8 23:27:21 2011
+NSEQ  6
+EFFN  3.331055
+CKSUM 3521784046
+STATS LOCAL MSV       -8.2010  0.71932
+STATS LOCAL VITERBI   -7.6469  0.71932
+STATS LOCAL FORWARD   -4.0144  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.15831  1.31544  1.48091  1.65969
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  0.00000        *
+      1   0.14154  3.38294  2.80366  3.28486      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+      2   3.43619  0.12984  3.48552  2.83124      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+      3   2.15088  1.44016  0.63909  2.12899      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+      4   3.43619  0.12984  3.48552  2.83124      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+      5   2.94939  3.59047  0.11686  3.49542      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+      6   3.43619  0.12984  3.48552  2.83124      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+      7   3.43619  0.12984  3.48552  2.83124      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+      8   0.14154  3.38294  2.80366  3.28486      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+      9   3.09131  2.59686  3.13936  0.17824      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     10   3.43619  0.12984  3.48552  2.83124     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     11   2.94939  3.59047  0.11686  3.49542     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     12   0.14154  3.38294  2.80366  3.28486     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     13   0.14154  3.38294  2.80366  3.28486     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     14   3.09131  2.59686  3.13936  0.17824     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     15   2.94939  3.59047  0.11686  3.49542     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     16   0.14154  3.38294  2.80366  3.28486     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     17   2.94939  3.59047  0.11686  3.49542     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     18   2.94939  3.59047  0.11686  3.49542     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     19   3.43619  0.12984  3.48552  2.83124     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     20   0.14154  3.38294  2.80366  3.28486     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     21   0.14154  3.38294  2.80366  3.28486     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     22   2.94939  3.59047  0.11686  3.49542     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     23   0.14154  3.38294  2.80366  3.28486     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     24   3.43619  0.12984  3.48552  2.83124     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     25   3.09131  2.59686  3.13936  0.17824     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     26   0.14154  3.38294  2.80366  3.28486     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     27   3.43619  0.12984  3.48552  2.83124     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     28   3.43619  0.12984  3.48552  2.83124     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     29   3.43619  0.12984  3.48552  2.83124     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     30   2.94939  3.59047  0.11686  3.49542     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     31   3.43619  0.12984  3.48552  2.83124     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     32   3.09131  2.59686  3.13936  0.17824     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     33   2.94939  3.59047  0.11686  3.49542     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     34   0.14154  3.38294  2.80366  3.28486     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     35   0.14154  3.38294  2.80366  3.28486     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     36   3.09131  2.59686  3.13936  0.17824     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     37   3.09131  2.59686  3.13936  0.17824     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     38   3.09131  2.59686  3.13936  0.17824     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     39   0.14154  3.38294  2.80366  3.28486     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     40   0.14154  3.38294  2.80366  3.28486     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     41   2.94939  3.59047  0.11686  3.49542     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     42   3.43619  0.12984  3.48552  2.83124     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     43   0.14154  3.38294  2.80366  3.28486     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     44   3.09131  2.59686  3.13936  0.17824     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01296  4.01296  1.46634  0.26236  1.09861  0.40547
+     45   0.14154  3.38294  2.80366  3.28486     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01858  3.99472        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Haptophyceae_1_SSU_end_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Oct  8 23:07:22 2011
+NSEQ  11
+EFFN  3.225342
+CKSUM 243674475
+STATS LOCAL MSV       -8.0048  0.71933
+STATS LOCAL VITERBI   -7.6830  0.71933
+STATS LOCAL FORWARD   -4.1089  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27189  1.62644  1.24659  1.44567
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  0.00000        *
+      1   0.14615  3.34859  2.78130  3.24727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+      2   2.92530  3.55551  0.12075  3.45686      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+      3   3.05675  2.57485  3.10612  0.18390      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+      4   3.39657  0.13465  3.44756  2.80232      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+      5   2.92530  3.55551  0.12075  3.45686      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+      6   3.05675  2.57485  3.10612  0.18390      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+      7   0.14615  3.34859  2.78130  3.24727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+      8   0.14615  3.34859  2.78130  3.24727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+      9   3.39657  0.13465  3.44756  2.80232      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     10   0.14615  3.34859  2.78130  3.24727     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     11   0.14615  3.34859  2.78130  3.24727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     12   2.92530  3.55551  0.12075  3.45686     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     13   2.92530  3.55551  0.12075  3.45686     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     14   3.05675  2.57485  3.10612  0.18390     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     15   3.05675  2.57485  3.10612  0.18390     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     16   3.05675  2.57485  3.10612  0.18390     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     17   3.39657  0.13465  3.44756  2.80232     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     18   3.39657  0.13465  3.44756  2.80232     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     19   2.92530  3.55551  0.12075  3.45686     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     20   3.05675  2.57485  3.10612  0.18390     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     21   0.14615  3.34859  2.78130  3.24727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     22   2.92530  3.55551  0.12075  3.45686     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     23   2.92530  3.55551  0.12075  3.45686     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     24   3.05675  2.57485  3.10612  0.18390     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     25   2.92530  3.55551  0.12075  3.45686     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     26   0.14615  3.34859  2.78130  3.24727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     27   0.14615  3.34859  2.78130  3.24727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     28   3.39657  0.13465  3.44756  2.80232     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     29   3.39657  0.13465  3.44756  2.80232     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     30   3.05675  2.57485  3.10612  0.18390     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     31   2.92530  3.55551  0.12075  3.45686     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     32   3.39657  0.13465  3.44756  2.80232     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     33   2.92530  3.55551  0.12075  3.45686     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     34   2.92530  3.55551  0.12075  3.45686     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     35   0.14615  3.34859  2.78130  3.24727     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     36   0.14615  3.34859  2.78130  3.24727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     37   2.92530  3.55551  0.12075  3.45686     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     38   2.92530  3.55551  0.12075  3.45686     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     39   0.14615  3.34859  2.78130  3.24727     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     40   3.05675  2.57485  3.10612  0.18390     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     41   3.39657  0.13465  3.44756  2.80232     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     42   0.14615  3.34859  2.78130  3.24727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     43   3.05675  2.57485  3.10612  0.18390     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     44   3.05675  2.57485  3.10612  0.18390     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99367  3.99367  1.46634  0.26236  1.09861  0.40547
+     45   0.14615  3.34859  2.78130  3.24727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01896  3.97506        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/P.hmm.h3f
Binary file ITSx_db/HMMs/P.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/P.hmm.h3i
Binary file ITSx_db/HMMs/P.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/P.hmm.h3m
Binary file ITSx_db/HMMs/P.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/P.hmm.h3p
Binary file ITSx_db/HMMs/P.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/Q.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/Q.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,1085 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Raphidophyceae_58S_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Jan 19 22:28:09 2012
+NSEQ  29
+EFFN  3.345337
+CKSUM 2540392139
+STATS LOCAL MSV       -8.0627  0.71933
+STATS LOCAL VITERBI   -7.5685  0.71933
+STATS LOCAL FORWARD   -3.8000  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72491  1.59887  1.25392  1.09570
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  0.00000        *
+      1   3.44143  0.12922  3.49054  2.83505      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+      2   0.14094  3.38749  2.80662  3.28984      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+      3   3.44143  0.12922  3.49054  2.83505      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+      4   3.09591  2.59978  3.14378  0.17750      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+      5   3.09591  2.59978  3.14378  0.17750      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+      6   3.44143  0.12922  3.49054  2.83505      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+      7   3.44143  0.12922  3.49054  2.83505      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+      8   2.95256  3.59508  0.11636  3.50051      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+      9   2.95256  3.59508  0.11636  3.50051      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     10   2.95256  3.59508  0.11636  3.50051     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     11   0.14094  3.38749  2.80662  3.28984     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     12   3.09591  2.59978  3.14378  0.17750     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     13   0.14094  3.38749  2.80662  3.28984     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     14   3.09591  2.59978  3.14378  0.17750     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     15   3.09591  2.59978  3.14378  0.17750     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     16   3.44143  0.12922  3.49054  2.83505     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     17   3.44143  0.12922  3.49054  2.83505     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     18   3.09591  2.59978  3.14378  0.17750     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     19   2.95256  3.59508  0.11636  3.50051     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     20   2.95256  3.59508  0.11636  3.50051     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     21   2.95256  3.59508  0.11636  3.50051     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     22   0.14094  3.38749  2.80662  3.28984     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     23   2.95256  3.59508  0.11636  3.50051     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     24   3.09591  2.59978  3.14378  0.17750     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     25   0.14094  3.38749  2.80662  3.28984     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     26   3.09591  2.59978  3.14378  0.17750     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     27   2.95256  3.59508  0.11636  3.50051     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     28   3.44143  0.12922  3.49054  2.83505     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     29   3.09591  2.59978  3.14378  0.17750     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     30   3.09591  2.59978  3.14378  0.17750     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     31   2.95256  3.59508  0.11636  3.50051     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     32   3.09591  2.59978  3.14378  0.17750     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     33   3.09591  2.59978  3.14378  0.17750     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     34   0.17548  3.26091  2.52535  3.15686     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     35   2.95256  3.59508  0.11636  3.50051     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     36   0.14094  3.38749  2.80662  3.28984     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     37   2.95256  3.59508  0.11636  3.50051     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     38   3.09591  2.59978  3.14378  0.17750     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     39   2.95256  3.59508  0.11636  3.50051     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     40   3.09591  2.59978  3.14378  0.17750     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     41   3.44143  0.12922  3.49054  2.83505     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     42   3.09591  2.59978  3.14378  0.17750     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     43   2.95256  3.59508  0.11636  3.50051     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     44   3.09591  2.59978  3.14378  0.17750     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03673  4.01554  4.01554  1.46634  0.26236  1.09861  0.40547
+     45   3.09591  2.59978  3.14378  0.17750     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01854  3.99734        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Raphidophyceae_58S_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Jan 19 22:28:25 2012
+NSEQ  22
+EFFN  3.348877
+CKSUM 1842339946
+STATS LOCAL MSV       -7.9914  0.71933
+STATS LOCAL VITERBI   -7.6624  0.71933
+STATS LOCAL FORWARD   -3.8281  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72163  1.59833  1.25283  1.09872
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  0.00000        *
+      1   2.95334  3.59622  0.11624  3.50177      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+      2   3.44273  0.12907  3.49178  2.83600      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+      3   0.14080  3.38861  2.80735  3.29107      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+      4   3.44273  0.12907  3.49178  2.83600      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+      5   3.09705  2.60051  3.14488  0.17732      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+      6   3.09705  2.60051  3.14488  0.17732      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+      7   3.44273  0.12907  3.49178  2.83600      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+      8   3.44273  0.12907  3.49178  2.83600      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+      9   2.95334  3.59622  0.11624  3.50177      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     10   2.95334  3.59622  0.11624  3.50177     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     11   2.95334  3.59622  0.11624  3.50177     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     12   2.96194  2.28365  3.01466  0.22652     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     13   0.14080  3.38861  2.80735  3.29107     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     14   3.09705  2.60051  3.14488  0.17732     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     15   3.09705  2.60051  3.14488  0.17732     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     16   3.44273  0.12907  3.49178  2.83600     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     17   3.44273  0.12907  3.49178  2.83600     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     18   3.09705  2.60051  3.14488  0.17732     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     19   2.95334  3.59622  0.11624  3.50177     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     20   2.95334  3.59622  0.11624  3.50177     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     21   2.95334  3.59622  0.11624  3.50177     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     22   0.14080  3.38861  2.80735  3.29107     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     23   2.95334  3.59622  0.11624  3.50177     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     24   3.09705  2.60051  3.14488  0.17732     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     25   0.14080  3.38861  2.80735  3.29107     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     26   3.09705  2.60051  3.14488  0.17732     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     27   2.95334  3.59622  0.11624  3.50177     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     28   3.44273  0.12907  3.49178  2.83600     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     29   3.09705  2.60051  3.14488  0.17732     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     30   3.09705  2.60051  3.14488  0.17732     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     31   3.09705  2.60051  3.14488  0.17732     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     32   0.14080  3.38861  2.80735  3.29107     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     33   3.09705  2.60051  3.14488  0.17732     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     34   0.14080  3.38861  2.80735  3.29107     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     35   2.95334  3.59622  0.11624  3.50177     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     36   0.14080  3.38861  2.80735  3.29107     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     37   2.95334  3.59622  0.11624  3.50177     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     38   3.09705  2.60051  3.14488  0.17732     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     39   2.95334  3.59622  0.11624  3.50177     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     40   3.09705  2.60051  3.14488  0.17732     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     41   3.44273  0.12907  3.49178  2.83600     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     42   3.09705  2.60051  3.14488  0.17732     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     43   2.95334  3.59622  0.11624  3.50177     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     44   3.09705  2.60051  3.14488  0.17732     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01618  4.01618  1.46634  0.26236  1.09861  0.40547
+     45   3.09705  2.60051  3.14488  0.17732     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01852  3.99799        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Raphidophyceae_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Jan 19 22:28:17 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3536786290
+STATS LOCAL MSV       -7.4659  0.72801
+STATS LOCAL VITERBI   -8.3758  0.72801
+STATS LOCAL FORWARD   -3.4843  0.72801
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92192  1.27826  1.22095  1.27224
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Raphidophyceae_58S_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Jan 19 22:20:20 2012
+NSEQ  55
+EFFN  3.481140
+CKSUM 1990027650
+STATS LOCAL MSV       -7.4661  0.71933
+STATS LOCAL VITERBI   -7.6976  0.71933
+STATS LOCAL FORWARD   -4.3165  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.41421  1.31471  1.35031  1.47329
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  0.00000        *
+      1   3.48996  0.12363  3.53697  2.87020      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+      2   2.98169  3.63765  0.11184  3.54756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+      3   0.13554  3.42968  2.83393  3.33606      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+      4   3.48996  0.12363  3.53697  2.87020      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+      5   3.13877  2.62701  3.18500  0.17080      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+      6   3.13877  2.62701  3.18500  0.17080      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+      7   3.13877  2.62701  3.18500  0.17080      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+      8   3.48996  0.12363  3.53697  2.87020      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+      9   0.13554  3.42968  2.83393  3.33606      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     10   2.98169  3.63765  0.11184  3.54756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     11   3.48996  0.12363  3.53697  2.87020     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     12   0.83378  2.54150  0.92669  2.39705     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     13   2.98169  3.63765  0.11184  3.54756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     14   3.48996  0.12363  3.53697  2.87020     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     15   2.98169  3.63765  0.11184  3.54756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     16   2.98169  3.63765  0.11184  3.54756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     17   0.13554  3.42968  2.83393  3.33606     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     18   3.13877  2.62701  3.18500  0.17080     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     19   2.98169  3.63765  0.11184  3.54756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     20   3.13877  2.62701  3.18500  0.17080     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     21   3.48996  0.12363  3.53697  2.87020     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     22   3.13877  2.62701  3.18500  0.17080     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     23   3.13877  2.62701  3.18500  0.17080     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     24   2.98169  3.63765  0.11184  3.54756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     25   2.98169  3.63765  0.11184  3.54756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     26   3.13877  2.62701  3.18500  0.17080     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     27   3.13877  2.62701  3.18500  0.17080     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     28   3.48996  0.12363  3.53697  2.87020     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     29   3.48996  0.12363  3.53697  2.87020     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     30   3.48996  0.12363  3.53697  2.87020     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     31   0.13554  3.42968  2.83393  3.33606     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     32   3.48996  0.12363  3.53697  2.87020     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     33   0.13554  3.42968  2.83393  3.33606     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     34   0.91891  2.17063  2.17690  0.98471     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     35   3.48996  0.12363  3.53697  2.87020     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     36   2.98169  3.63765  0.11184  3.54756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     37   0.13554  3.42968  2.83393  3.33606     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     38   3.13877  2.62701  3.18500  0.17080     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     39   2.98169  3.63765  0.11184  3.54756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     40   0.13554  3.42968  2.83393  3.33606     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     41   0.13554  3.42968  2.83393  3.33606     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     42   2.98169  3.63765  0.11184  3.54756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     43   0.13554  3.42968  2.83393  3.33606     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     44   0.13554  3.42968  2.83393  3.33606     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03584  4.03974  4.03974  1.46634  0.26236  1.09861  0.40547
+     45   3.48996  0.12363  3.53697  2.87020     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01808  4.02198        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Raphidophyceae_58S_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Oct  8 23:41:06 2011
+NSEQ  2
+EFFN  2.000000
+CKSUM 4228921988
+STATS LOCAL MSV       -7.5411  0.72814
+STATS LOCAL VITERBI   -8.1860  0.72814
+STATS LOCAL FORWARD   -3.8575  0.72814
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23782  1.40044  1.49697  1.42842
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Raphidophyceae_4_LSU_start_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Oct  8 23:57:11 2011
+NSEQ  23
+EFFN  3.293335
+CKSUM 2676057667
+STATS LOCAL MSV       -8.1976  0.71932
+STATS LOCAL VITERBI   -7.6482  0.71932
+STATS LOCAL FORWARD   -3.7861  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.06153  1.46136  1.69261  1.43500
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  0.00000        *
+      1   3.07909  2.58908  3.12761  0.18022      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+      2   3.07909  2.58908  3.12761  0.18022      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+      3   3.42223  0.13151  3.47214  2.82107      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+      4   0.14315  3.37082  2.79579  3.27159      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+      5   2.94093  3.57817  0.11821  3.48184      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+      6   0.14315  3.37082  2.79579  3.27159      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+      7   3.07909  2.58908  3.12761  0.18022      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+      8   3.42223  0.13151  3.47214  2.82107      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+      9   3.07909  2.58908  3.12761  0.18022      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     10   3.42223  0.13151  3.47214  2.82107     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     11   3.07909  2.58908  3.12761  0.18022     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     12   0.14315  3.37082  2.79579  3.27159     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     13   0.14315  3.37082  2.79579  3.27159     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     14   3.07909  2.58908  3.12761  0.18022     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     15   3.42223  0.13151  3.47214  2.82107     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     16   0.14315  3.37082  2.79579  3.27159     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     17   0.14315  3.37082  2.79579  3.27159     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     18   2.94093  3.57817  0.11821  3.48184     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     19   3.42223  0.13151  3.47214  2.82107     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     20   0.14315  3.37082  2.79579  3.27159     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     21   0.14315  3.37082  2.79579  3.27159     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     22   2.94093  3.57817  0.11821  3.48184     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     23   0.14315  3.37082  2.79579  3.27159     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     24   0.14315  3.37082  2.79579  3.27159     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     25   2.94093  3.57817  0.11821  3.48184     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     26   0.14315  3.37082  2.79579  3.27159     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     27   3.42223  0.13151  3.47214  2.82107     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     28   3.42223  0.13151  3.47214  2.82107     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     29   3.42223  0.13151  3.47214  2.82107     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     30   2.94093  3.57817  0.11821  3.48184     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     31   3.42223  0.13151  3.47214  2.82107     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     32   3.07909  2.58908  3.12761  0.18022     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     33   2.94093  3.57817  0.11821  3.48184     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     34   0.14315  3.37082  2.79579  3.27159     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     35   0.14315  3.37082  2.79579  3.27159     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     36   3.07909  2.58908  3.12761  0.18022     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     37   3.07909  2.58908  3.12761  0.18022     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     38   3.07909  2.58908  3.12761  0.18022     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     39   0.14315  3.37082  2.79579  3.27159     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     40   0.14315  3.37082  2.79579  3.27159     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     41   2.94093  3.57817  0.11821  3.48184     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     42   3.42223  0.13151  3.47214  2.82107     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     43   0.14315  3.37082  2.79579  3.27159     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     44   3.07909  2.58908  3.12761  0.18022     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03709  4.00612  4.00612  1.46634  0.26236  1.09861  0.40547
+     45   0.14315  3.37082  2.79579  3.27159     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01872  3.98775        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Raphidophyceae_1_SSU_end_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Oct  8 23:33:58 2011
+NSEQ  4
+EFFN  3.230469
+CKSUM 805615287
+STATS LOCAL MSV       -8.0211  0.71931
+STATS LOCAL VITERBI   -7.6818  0.71931
+STATS LOCAL FORWARD   -4.1105  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27186  1.62653  1.24657  1.44566
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  0.00000        *
+      1   0.14592  3.35028  2.78241  3.24912      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      2   2.92650  3.55724  0.12055  3.45877      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      3   3.05845  2.57594  3.10775  0.18362      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      4   3.39853  0.13441  3.44944  2.80375      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      5   2.92650  3.55724  0.12055  3.45877      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      6   3.05845  2.57594  3.10775  0.18362      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      7   0.14592  3.35028  2.78241  3.24912      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      8   0.14592  3.35028  2.78241  3.24912      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      9   3.39853  0.13441  3.44944  2.80375      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     10   0.14592  3.35028  2.78241  3.24912     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     11   0.14592  3.35028  2.78241  3.24912     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     12   2.92650  3.55724  0.12055  3.45877     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     13   2.92650  3.55724  0.12055  3.45877     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     14   3.05845  2.57594  3.10775  0.18362     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     15   3.05845  2.57594  3.10775  0.18362     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     16   3.05845  2.57594  3.10775  0.18362     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     17   3.39853  0.13441  3.44944  2.80375     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     18   3.39853  0.13441  3.44944  2.80375     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     19   2.92650  3.55724  0.12055  3.45877     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     20   3.05845  2.57594  3.10775  0.18362     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     21   0.14592  3.35028  2.78241  3.24912     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     22   2.92650  3.55724  0.12055  3.45877     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     23   2.92650  3.55724  0.12055  3.45877     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     24   3.05845  2.57594  3.10775  0.18362     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     25   2.92650  3.55724  0.12055  3.45877     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     26   0.14592  3.35028  2.78241  3.24912     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     27   0.14592  3.35028  2.78241  3.24912     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     28   3.39853  0.13441  3.44944  2.80375     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     29   3.39853  0.13441  3.44944  2.80375     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     30   3.05845  2.57594  3.10775  0.18362     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     31   2.92650  3.55724  0.12055  3.45877     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     32   3.39853  0.13441  3.44944  2.80375     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     33   2.92650  3.55724  0.12055  3.45877     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     34   2.92650  3.55724  0.12055  3.45877     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     35   0.14592  3.35028  2.78241  3.24912     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     36   0.14592  3.35028  2.78241  3.24912     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     37   2.92650  3.55724  0.12055  3.45877     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     38   2.92650  3.55724  0.12055  3.45877     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     39   0.14592  3.35028  2.78241  3.24912     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     40   3.05845  2.57594  3.10775  0.18362     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     41   3.39853  0.13441  3.44944  2.80375     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     42   0.14592  3.35028  2.78241  3.24912     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     43   3.05845  2.57594  3.10775  0.18362     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     44   3.05845  2.57594  3.10775  0.18362     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     45   0.14592  3.35028  2.78241  3.24912     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01894  3.97602        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/Q.hmm.h3f
Binary file ITSx_db/HMMs/Q.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/Q.hmm.h3i
Binary file ITSx_db/HMMs/Q.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/Q.hmm.h3m
Binary file ITSx_db/HMMs/Q.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/Q.hmm.h3p
Binary file ITSx_db/HMMs/Q.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/R.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/R.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,6355 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Rhizaria_58S_end_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 15:33:02 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1899220078
+STATS LOCAL MSV       -7.5314  0.72773
+STATS LOCAL VITERBI   -8.2053  0.72773
+STATS LOCAL FORWARD   -3.4398  0.72773
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39561  1.53003  1.21055  1.43652
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.53331  3.02441  0.20344  2.88069     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Rhizaria_58S_end_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 15:32:14 2012
+NSEQ  44
+EFFN  3.789307
+CKSUM 2492145104
+STATS LOCAL MSV       -6.9952  0.71932
+STATS LOCAL VITERBI   -7.7147  0.71932
+STATS LOCAL FORWARD   -4.1076  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.52743  1.25061  1.45063  1.33883
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  0.00000        *
+      1   0.12490  3.51867  2.89120  3.43374      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+      2   3.23058  2.68521  3.27322  0.15739      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+      3   3.04180  3.72624  0.10307  3.64571      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+      4   3.59175  0.11278  3.63422  2.94315      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+      5   0.12490  3.51867  2.89120  3.43374      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+      6   0.14815  3.42758  2.66373  3.33692      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+      7   0.12490  3.51867  2.89120  3.43374      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+      8   3.23058  2.68521  3.27322  0.15739      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+      9   2.82736  1.80315  2.88647  0.32812      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     10   3.04180  3.72624  0.10307  3.64571     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     11   3.59175  0.11278  3.63422  2.94315     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     12   3.04180  3.72624  0.10307  3.64571     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     13   3.59175  0.11278  3.63422  2.94315     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     14   3.59175  0.11278  3.63422  2.94315     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     15   3.04180  3.72624  0.10307  3.64571     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     16   3.59175  0.11278  3.63422  2.94315     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     17   2.50841  1.08668  2.57840  0.68246     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     18   0.12490  3.51867  2.89120  3.43374     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     19   3.04180  3.72624  0.10307  3.64571     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     20   1.90623  0.38196  2.63636  2.33078     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     21   3.59175  0.11278  3.63422  2.94315     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     22   2.80206  3.62415  0.12382  3.53678     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     23   2.80142  3.62384  0.12389  3.53646     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     24   3.59175  0.11278  3.63422  2.94315     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     25   0.12490  3.51867  2.89120  3.43374     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     26   3.23058  2.68521  3.27322  0.15739     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     27   3.04180  3.72624  0.10307  3.64571     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     28   3.59175  0.11278  3.63422  2.94315     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     29   3.23058  2.68521  3.27322  0.15739     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     30   3.23058  2.68521  3.27322  0.15739     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     31   3.59175  0.11278  3.63422  2.94315     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     32   3.59175  0.11278  3.63422  2.94315     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     33   3.23058  2.68521  3.27322  0.15739     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     34   3.23058  2.68521  3.27322  0.15739     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     35   3.04180  3.72624  0.10307  3.64571     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     36   0.12490  3.51867  2.89120  3.43374     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     37   3.04180  3.72624  0.10307  3.64571     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     38   0.12490  3.51867  2.89120  3.43374     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     39   0.12490  3.51867  2.89120  3.43374     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     40   3.46796  0.13776  3.51501  2.69173     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     41   2.93556  0.30373  2.99948  1.83868     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     42   3.23058  2.68521  3.27322  0.15739     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     43   3.23058  2.68521  3.27322  0.15739     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     44   1.78643  2.34733  2.54280  0.41829     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03396  4.09256  4.09256  1.46634  0.26236  1.09861  0.40547
+     45   3.23058  2.68521  3.27322  0.15739     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01713  4.07572        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Rhizaria_58S_end_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 15:32:04 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2834967617
+STATS LOCAL MSV       -7.4096  0.72847
+STATS LOCAL VITERBI   -8.2704  0.72847
+STATS LOCAL FORWARD   -3.1984  0.72847
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73203  1.50350  1.26657  1.14279
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Rhizaria_58S_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 15:31:41 2012
+NSEQ  11
+EFFN  3.300537
+CKSUM 3132885964
+STATS LOCAL MSV       -8.1322  0.71932
+STATS LOCAL VITERBI   -7.7747  0.71932
+STATS LOCAL FORWARD   -3.9845  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.06390  1.19196  1.27025  1.24252
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  0.00000        *
+      1   2.94256  3.58053  0.11795  3.48445      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+      2   3.42491  0.13119  3.47471  2.82302      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+      3   3.08143  2.59057  3.12986  0.17984      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+      4   3.42491  0.13119  3.47471  2.82302      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+      5   3.42491  0.13119  3.47471  2.82302      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+      6   2.94256  3.58053  0.11795  3.48445      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+      7   3.08143  2.59057  3.12986  0.17984      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+      8   0.14284  3.37315  2.79730  3.27414      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+      9   2.94256  3.58053  0.11795  3.48445      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     10   2.94256  3.58053  0.11795  3.48445     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     11   3.08143  2.59057  3.12986  0.17984     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     12   2.94256  3.58053  0.11795  3.48445     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     13   3.08143  2.59057  3.12986  0.17984     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     14   3.42491  0.13119  3.47471  2.82302     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     15   3.42491  0.13119  3.47471  2.82302     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     16   3.42491  0.13119  3.47471  2.82302     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     17   3.42491  0.13119  3.47471  2.82302     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     18   3.08143  2.59057  3.12986  0.17984     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     19   3.08143  2.59057  3.12986  0.17984     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     20   2.94256  3.58053  0.11795  3.48445     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     21   2.94256  3.58053  0.11795  3.48445     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     22   0.14284  3.37315  2.79730  3.27414     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     23   2.94256  3.58053  0.11795  3.48445     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     24   3.42491  0.13119  3.47471  2.82302     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     25   0.14284  3.37315  2.79730  3.27414     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     26   3.08143  2.59057  3.12986  0.17984     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     27   2.94256  3.58053  0.11795  3.48445     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     28   3.42491  0.13119  3.47471  2.82302     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     29   3.42491  0.13119  3.47471  2.82302     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     30   3.08143  2.59057  3.12986  0.17984     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     31   3.42491  0.13119  3.47471  2.82302     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     32   3.42491  0.13119  3.47471  2.82302     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     33   3.08143  2.59057  3.12986  0.17984     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     34   3.08143  2.59057  3.12986  0.17984     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     35   3.42491  0.13119  3.47471  2.82302     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     36   0.14284  3.37315  2.79730  3.27414     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     37   2.94256  3.58053  0.11795  3.48445     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     38   3.08143  2.59057  3.12986  0.17984     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     39   2.94256  3.58053  0.11795  3.48445     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     40   3.08143  2.59057  3.12986  0.17984     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     41   3.42491  0.13119  3.47471  2.82302     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     42   2.94256  3.58053  0.11795  3.48445     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     43   3.08143  2.59057  3.12986  0.17984     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     44   2.60420  2.95771  0.24740  2.37221     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00743  4.00743  1.46634  0.26236  1.09861  0.40547
+     45   3.08143  2.59057  3.12986  0.17984     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01869  3.98908        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Rhizaria_58S_end_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 15:32:29 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1282913076
+STATS LOCAL MSV       -7.6189  0.72738
+STATS LOCAL VITERBI   -8.4211  0.72738
+STATS LOCAL FORWARD   -3.5871  0.72738
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.18710  1.48221  1.25579  1.69877
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Rhizaria_58S_end_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 15:32:22 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1451329582
+STATS LOCAL MSV       -7.5458  0.72716
+STATS LOCAL VITERBI   -8.4016  0.72716
+STATS LOCAL FORWARD   -3.3619  0.72716
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39238  1.54778  1.06991  1.63088
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Rhizaria_58S_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 15:31:56 2012
+NSEQ  17
+EFFN  3.830811
+CKSUM 1105590603
+STATS LOCAL MSV       -7.0323  0.71931
+STATS LOCAL VITERBI   -7.7236  0.71931
+STATS LOCAL FORWARD   -4.0046  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.67592  1.39884  1.36030  1.17313
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  0.00000        *
+      1   3.60462  0.11149  3.64650  2.95231      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+      2   3.04933  3.73739  0.10202  3.65808      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+      3   3.13157  0.22889  3.19022  2.12218      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+      4   3.24239  2.69270  3.28457  0.15575      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+      5   3.24239  2.69270  3.28457  0.15575      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+      6   2.50122  1.00748  2.57173  0.74134      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+      7   3.60462  0.11149  3.64650  2.95231      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+      8   3.04933  3.73739  0.10202  3.65808      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+      9   0.12362  3.52998  2.89846  3.44617      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     10   3.04933  3.73739  0.10202  3.65808     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     11   0.12362  3.52998  2.89846  3.44617     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     12   3.24239  2.69270  3.28457  0.15575     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     13   0.12362  3.52998  2.89846  3.44617     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     14   2.50122  1.00748  2.57173  0.74134     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     15   3.60462  0.11149  3.64650  2.95231     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     16   3.60462  0.11149  3.64650  2.95231     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     17   3.24239  2.69270  3.28457  0.15575     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     18   3.24239  2.69270  3.28457  0.15575     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     19   3.04933  3.73739  0.10202  3.65808     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     20   0.77230  2.60186  0.97173  2.45942     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     21   0.12362  3.52998  2.89846  3.44617     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     22   0.12362  3.52998  2.89846  3.44617     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     23   3.04933  3.73739  0.10202  3.65808     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     24   3.60462  0.11149  3.64650  2.95231     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     25   0.12362  3.52998  2.89846  3.44617     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     26   3.24239  2.69270  3.28457  0.15575     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     27   3.04933  3.73739  0.10202  3.65808     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     28   3.60462  0.11149  3.64650  2.95231     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     29   3.60462  0.11149  3.64650  2.95231     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     30   3.24239  2.69270  3.28457  0.15575     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     31   3.60462  0.11149  3.64650  2.95231     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     32   3.24239  2.69270  3.28457  0.15575     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     33   3.24239  2.69270  3.28457  0.15575     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     34   3.24239  2.69270  3.28457  0.15575     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     35   3.04933  3.73739  0.10202  3.65808     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     36   0.12362  3.52998  2.89846  3.44617     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     37   3.04933  3.73739  0.10202  3.65808     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     38   3.24239  2.69270  3.28457  0.15575     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     39   2.26733  3.33268  0.19735  3.22358     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     40   3.24239  2.69270  3.28457  0.15575     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     41   3.60462  0.11149  3.64650  2.95231     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     42   3.04933  3.73739  0.10202  3.65808     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     43   3.04933  3.73739  0.10202  3.65808     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     44   3.24239  2.69270  3.28457  0.15575     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03373  4.09947  4.09947  1.46634  0.26236  1.09861  0.40547
+     45   3.24239  2.69270  3.28457  0.15575     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01700  4.08275        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Rhizaria_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 15:31:48 2012
+NSEQ  17
+EFFN  3.249756
+CKSUM 3604078727
+STATS LOCAL MSV       -8.1048  0.71933
+STATS LOCAL VITERBI   -7.9622  0.71933
+STATS LOCAL FORWARD   -4.0599  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73670  1.25612  1.25633  1.36866
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  0.00000        *
+      1   2.93097  3.56372  0.11982  3.46591      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+      2   3.40585  0.13351  3.45646  2.80911      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+      3   2.93097  3.56372  0.11982  3.46591      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+      4   3.40585  0.13351  3.45646  2.80911      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+      5   3.06482  2.58000  3.11388  0.18256      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+      6   3.06482  2.58000  3.11388  0.18256      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+      7   3.06482  2.58000  3.11388  0.18256      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+      8   3.40585  0.13351  3.45646  2.80911      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+      9   2.93097  3.56372  0.11982  3.46591      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     10   0.23441  2.58428  2.59978  2.82642     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     11   2.93097  3.56372  0.11982  3.46591     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     12   0.14506  3.35663  2.78655  3.25606     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     13   2.93097  3.56372  0.11982  3.46591     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     14   3.40585  0.13351  3.45646  2.80911     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     15   3.40585  0.13351  3.45646  2.80911     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     16   3.40585  0.13351  3.45646  2.80911     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     17   3.06482  2.58000  3.11388  0.18256     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     18   3.40585  0.13351  3.45646  2.80911     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     19   2.93097  3.56372  0.11982  3.46591     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     20   2.93097  3.56372  0.11982  3.46591     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     21   0.14506  3.35663  2.78655  3.25606     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     22   0.14506  3.35663  2.78655  3.25606     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     23   2.93097  3.56372  0.11982  3.46591     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     24   3.40585  0.13351  3.45646  2.80911     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     25   0.14506  3.35663  2.78655  3.25606     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     26   3.06482  2.58000  3.11388  0.18256     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     27   2.93097  3.56372  0.11982  3.46591     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     28   3.40585  0.13351  3.45646  2.80911     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     29   3.40585  0.13351  3.45646  2.80911     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     30   3.06482  2.58000  3.11388  0.18256     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     31   3.40585  0.13351  3.45646  2.80911     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     32   3.06482  2.58000  3.11388  0.18256     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     33   3.40585  0.13351  3.45646  2.80911     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     34   3.06482  2.58000  3.11388  0.18256     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     35   2.93097  3.56372  0.11982  3.46591     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     36   0.14506  3.35663  2.78655  3.25606     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     37   2.93097  3.56372  0.11982  3.46591     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     38   3.06482  2.58000  3.11388  0.18256     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     39   0.14506  3.35663  2.78655  3.25606     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     40   3.06482  2.58000  3.11388  0.18256     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     41   3.40585  0.13351  3.45646  2.80911     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     42   2.93097  3.56372  0.11982  3.46591     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     43   2.93097  3.56372  0.11982  3.46591     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     44   3.06482  2.58000  3.11388  0.18256     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99816  3.99816  1.46634  0.26236  1.09861  0.40547
+     45   3.06482  2.58000  3.11388  0.18256     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01887  3.97964        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhizaria_58S_start_eleven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 02:11:53 2012
+NSEQ  31
+EFFN  3.379272
+CKSUM 2165802544
+STATS LOCAL MSV       -7.4242  0.71932
+STATS LOCAL VITERBI   -7.6170  0.71932
+STATS LOCAL FORWARD   -4.3017  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55729  1.52929  1.25161  1.24981
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  0.00000        *
+      1   2.97916  2.30506  3.03127  0.22170      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+      2   3.45378  0.12777  3.50236  2.84402      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+      3   3.10676  2.60668  3.15422  0.17578      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+      4   2.96001  3.60594  0.11519  3.51250      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+      5   0.13955  3.39821  2.81357  3.30158      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+      6   2.96001  3.60594  0.11519  3.51250      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+      7   2.96001  3.60594  0.11519  3.51250      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+      8   3.45378  0.12777  3.50236  2.84402      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+      9   3.10676  2.60668  3.15422  0.17578      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     10   3.10676  2.60668  3.15422  0.17578     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     11   3.45378  0.12777  3.50236  2.84402     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     12   0.13955  3.39821  2.81357  3.30158     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     13   3.10676  2.60668  3.15422  0.17578     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     14   0.13955  3.39821  2.81357  3.30158     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     15   0.13955  3.39821  2.81357  3.30158     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     16   0.13955  3.39821  2.81357  3.30158     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     17   3.45378  0.12777  3.50236  2.84402     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     18   3.10676  2.60668  3.15422  0.17578     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     19   2.96001  3.60594  0.11519  3.51250     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     20   3.29555  0.16300  3.34900  2.54800     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     21   0.13955  3.39821  2.81357  3.30158     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     22   2.96001  3.60594  0.11519  3.51250     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     23   3.45378  0.12777  3.50236  2.84402     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     24   2.96001  3.60594  0.11519  3.51250     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     25   3.10676  2.60668  3.15422  0.17578     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     26   2.96001  3.60594  0.11519  3.51250     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     27   3.45378  0.12777  3.50236  2.84402     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     28   3.10676  2.60668  3.15422  0.17578     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     29   3.45378  0.12777  3.50236  2.84402     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     30   2.96001  3.60594  0.11519  3.51250     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     31   2.96001  3.60594  0.11519  3.51250     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     32   3.10676  2.60668  3.15422  0.17578     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     33   3.10676  2.60668  3.15422  0.17578     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     34   2.61246  3.43529  0.15231  3.33228     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     35   0.19383  3.12524  2.69152  2.74111     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     36   2.96001  3.60594  0.11519  3.51250     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     37   3.10676  2.60668  3.15422  0.17578     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     38   2.96001  3.60594  0.11519  3.51250     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     39   3.10676  2.60668  3.15422  0.17578     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     40   2.96001  3.60594  0.11519  3.51250     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     41   3.45378  0.12777  3.50236  2.84402     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     42   0.19602  3.19941  2.38831  3.09154     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     43   3.10676  2.60668  3.15422  0.17578     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     44   3.10676  2.60668  3.15422  0.17578     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03651  4.02164  4.02164  1.46634  0.26236  1.09861  0.40547
+     45   0.13955  3.39821  2.81357  3.30158     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01842  4.00356        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhizaria_58S_start_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 14:39:29 2012
+NSEQ  40
+EFFN  3.432617
+CKSUM 3346258546
+STATS LOCAL MSV       -7.6747  0.71933
+STATS LOCAL VITERBI   -7.7146  0.71933
+STATS LOCAL FORWARD   -4.2191  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21566  1.45905  1.43705  1.45500
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  0.00000        *
+      1   1.71916  2.27454  2.44490  0.46013      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+      2   3.47289  0.12556  3.52064  2.85787      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+      3   0.13742  3.41482  2.82432  3.31978      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+      4   0.31690  2.91014  1.86199  2.78440      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+      5   3.12363  2.61740  3.17044  0.17313      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+      6   3.47289  0.12556  3.52064  2.85787      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+      7   3.12363  2.61740  3.17044  0.17313      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+      8   3.12363  2.61740  3.17044  0.17313      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+      9   3.03573  2.40304  3.08573  0.20356      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     10   2.97148  3.62270  0.11341  3.53103     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     11   3.47289  0.12556  3.52064  2.85787     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     12   0.13742  3.41482  2.82432  3.31978     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     13   0.13742  3.41482  2.82432  3.31978     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     14   3.12363  2.61740  3.17044  0.17313     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     15   2.97148  3.62270  0.11341  3.53103     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     16   2.97148  3.62270  0.11341  3.53103     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     17   0.13742  3.41482  2.82432  3.31978     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     18   3.12363  2.61740  3.17044  0.17313     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     19   2.97148  3.62270  0.11341  3.53103     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     20   0.13742  3.41482  2.82432  3.31978     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     21   3.47289  0.12556  3.52064  2.85787     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     22   3.12363  2.61740  3.17044  0.17313     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     23   0.13742  3.41482  2.82432  3.31978     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     24   2.97148  3.62270  0.11341  3.53103     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     25   2.97148  3.62270  0.11341  3.53103     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     26   3.47289  0.12556  3.52064  2.85787     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     27   3.12363  2.61740  3.17044  0.17313     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     28   3.47289  0.12556  3.52064  2.85787     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     29   3.12363  2.61740  3.17044  0.17313     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     30   3.47289  0.12556  3.52064  2.85787     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     31   2.97148  3.62270  0.11341  3.53103     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     32   3.47289  0.12556  3.52064  2.85787     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     33   0.13742  3.41482  2.82432  3.31978     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     34   0.13742  3.41482  2.82432  3.31978     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     35   3.32901  0.15694  3.38130  2.58484     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     36   2.97148  3.62270  0.11341  3.53103     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     37   0.13742  3.41482  2.82432  3.31978     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     38   3.12363  2.61740  3.17044  0.17313     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     39   2.97148  3.62270  0.11341  3.53103     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     40   0.13742  3.41482  2.82432  3.31978     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     41   0.13742  3.41482  2.82432  3.31978     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     42   2.97148  3.62270  0.11341  3.53103     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     43   0.13742  3.41482  2.82432  3.31978     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     44   0.13742  3.41482  2.82432  3.31978     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03116  4.03116  1.46634  0.26236  1.09861  0.40547
+     45   3.47289  0.12556  3.52064  2.85787     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01824  4.01325        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhizaria_58S_start_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 14:39:22 2012
+NSEQ  21
+EFFN  3.222290
+CKSUM 1508263825
+STATS LOCAL MSV       -8.2708  0.71933
+STATS LOCAL VITERBI   -7.7088  0.71933
+STATS LOCAL FORWARD   -4.2457  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21645  1.46650  1.37607  1.51223
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  0.00000        *
+      1   0.14629  3.34758  2.78064  3.24617      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+      2   3.39541  0.13480  3.44645  2.80147      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+      3   2.92459  3.55448  0.12087  3.45573      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+      4   0.14629  3.34758  2.78064  3.24617      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+      5   3.05574  2.57421  3.10514  0.18407      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+      6   3.39541  0.13480  3.44645  2.80147      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+      7   3.05574  2.57421  3.10514  0.18407      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+      8   3.05574  2.57421  3.10514  0.18407      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+      9   3.05574  2.57421  3.10514  0.18407      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     10   2.92459  3.55448  0.12087  3.45573     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     11   3.39541  0.13480  3.44645  2.80147     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     12   0.14629  3.34758  2.78064  3.24617     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     13   0.14629  3.34758  2.78064  3.24617     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     14   3.05574  2.57421  3.10514  0.18407     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     15   2.92459  3.55448  0.12087  3.45573     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     16   2.92459  3.55448  0.12087  3.45573     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     17   0.14629  3.34758  2.78064  3.24617     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     18   3.05574  2.57421  3.10514  0.18407     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     19   2.92459  3.55448  0.12087  3.45573     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     20   0.14629  3.34758  2.78064  3.24617     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     21   3.39541  0.13480  3.44645  2.80147     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     22   3.05574  2.57421  3.10514  0.18407     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     23   0.14629  3.34758  2.78064  3.24617     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     24   2.92459  3.55448  0.12087  3.45573     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     25   2.92459  3.55448  0.12087  3.45573     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     26   3.39541  0.13480  3.44645  2.80147     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     27   3.05574  2.57421  3.10514  0.18407     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     28   3.39541  0.13480  3.44645  2.80147     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     29   3.05574  2.57421  3.10514  0.18407     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     30   3.39541  0.13480  3.44645  2.80147     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     31   2.92459  3.55448  0.12087  3.45573     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     32   3.39541  0.13480  3.44645  2.80147     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     33   0.14629  3.34758  2.78064  3.24617     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     34   0.14629  3.34758  2.78064  3.24617     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     35   3.39541  0.13480  3.44645  2.80147     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     36   2.92459  3.55448  0.12087  3.45573     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     37   0.14629  3.34758  2.78064  3.24617     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     38   3.05574  2.57421  3.10514  0.18407     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     39   2.92459  3.55448  0.12087  3.45573     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     40   0.14629  3.34758  2.78064  3.24617     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     41   0.14629  3.34758  2.78064  3.24617     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     42   2.92459  3.55448  0.12087  3.45573     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     43   0.14629  3.34758  2.78064  3.24617     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     44   0.14629  3.34758  2.78064  3.24617     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99310  3.99310  1.46634  0.26236  1.09861  0.40547
+     45   3.39541  0.13480  3.44645  2.80147     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01897  3.97449        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhizaria_58S_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 14:39:00 2012
+NSEQ  12
+EFFN  3.301758
+CKSUM 1440402788
+STATS LOCAL MSV       -8.1666  0.71931
+STATS LOCAL VITERBI   -7.6903  0.71931
+STATS LOCAL FORWARD   -3.9835  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33353  1.43330  1.24691  1.55806
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  0.00000        *
+      1   2.41922  0.77428  2.49183  1.00180      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      2   2.94283  3.58093  0.11791  3.48489      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      3   0.14279  3.37354  2.79756  3.27457      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      4   3.42536  0.13114  3.47515  2.82335      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      5   3.42536  0.13114  3.47515  2.82335      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      6   3.42536  0.13114  3.47515  2.82335      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      7   3.08183  2.59083  3.13024  0.17977      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      8   3.08183  2.59083  3.13024  0.17977      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+      9   0.14279  3.37354  2.79756  3.27457      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     10   2.94283  3.58093  0.11791  3.48489     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     11   3.42536  0.13114  3.47515  2.82335     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     12   2.94283  3.58093  0.11791  3.48489     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     13   0.14279  3.37354  2.79756  3.27457     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     14   0.14279  3.37354  2.79756  3.27457     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     15   2.94283  3.58093  0.11791  3.48489     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     16   2.94283  3.58093  0.11791  3.48489     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     17   0.14279  3.37354  2.79756  3.27457     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     18   3.08183  2.59083  3.13024  0.17977     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     19   2.94283  3.58093  0.11791  3.48489     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     20   3.08183  2.59083  3.13024  0.17977     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     21   3.42536  0.13114  3.47515  2.82335     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     22   3.08183  2.59083  3.13024  0.17977     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     23   3.08183  2.59083  3.13024  0.17977     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     24   2.94283  3.58093  0.11791  3.48489     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     25   2.94283  3.58093  0.11791  3.48489     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     26   3.08183  2.59083  3.13024  0.17977     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     27   3.08183  2.59083  3.13024  0.17977     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     28   3.42536  0.13114  3.47515  2.82335     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     29   3.42536  0.13114  3.47515  2.82335     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     30   2.94283  3.58093  0.11791  3.48489     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     31   2.94283  3.58093  0.11791  3.48489     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     32   3.42536  0.13114  3.47515  2.82335     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     33   0.14279  3.37354  2.79756  3.27457     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     34   0.14279  3.37354  2.79756  3.27457     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     35   3.42536  0.13114  3.47515  2.82335     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     36   2.94283  3.58093  0.11791  3.48489     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     37   0.14279  3.37354  2.79756  3.27457     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     38   3.08183  2.59083  3.13024  0.17977     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     39   2.94283  3.58093  0.11791  3.48489     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     40   0.14279  3.37354  2.79756  3.27457     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     41   0.14279  3.37354  2.79756  3.27457     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     42   2.94283  3.58093  0.11791  3.48489     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     43   0.14279  3.37354  2.79756  3.27457     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     44   0.14279  3.37354  2.79756  3.27457     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
+     45   3.42536  0.13114  3.47515  2.82335     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01869  3.98931        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhizaria_58S_start_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 14:39:42 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3286888011
+STATS LOCAL MSV       -7.5161  0.72833
+STATS LOCAL VITERBI   -8.2412  0.72833
+STATS LOCAL FORWARD   -3.6122  0.72833
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33870  1.58592  1.37006  1.27668
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhizaria_58S_start_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 14:39:35 2012
+NSEQ  6
+EFFN  3.348633
+CKSUM 2591723296
+STATS LOCAL MSV       -8.3005  0.71933
+STATS LOCAL VITERBI   -7.5976  0.71933
+STATS LOCAL FORWARD   -4.2781  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.36916  1.46090  1.28717  1.43716
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  0.00000        *
+      1   0.14081  3.38854  2.80730  3.29098      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+      2   0.14081  3.38854  2.80730  3.29098      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+      3   0.14081  3.38854  2.80730  3.29098      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+      4   2.95329  3.59614  0.11625  3.50169      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+      5   3.44264  0.12908  3.49169  2.83593      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+      6   3.44264  0.12908  3.49169  2.83593      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+      7   3.09697  2.60046  3.14480  0.17734      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+      8   3.09697  2.60046  3.14480  0.17734      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+      9   2.95329  3.59614  0.11625  3.50169      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     10   3.44264  0.12908  3.49169  2.83593     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     11   3.09697  2.60046  3.14480  0.17734     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     12   2.95329  3.59614  0.11625  3.50169     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     13   0.14081  3.38854  2.80730  3.29098     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     14   3.44264  0.12908  3.49169  2.83593     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     15   2.95329  3.59614  0.11625  3.50169     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     16   2.95329  3.59614  0.11625  3.50169     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     17   0.14081  3.38854  2.80730  3.29098     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     18   3.09697  2.60046  3.14480  0.17734     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     19   2.95329  3.59614  0.11625  3.50169     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     20   3.09697  2.60046  3.14480  0.17734     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     21   3.44264  0.12908  3.49169  2.83593     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     22   3.09697  2.60046  3.14480  0.17734     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     23   0.14081  3.38854  2.80730  3.29098     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     24   2.95329  3.59614  0.11625  3.50169     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     25   2.95329  3.59614  0.11625  3.50169     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     26   3.44264  0.12908  3.49169  2.83593     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     27   3.09697  2.60046  3.14480  0.17734     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     28   3.44264  0.12908  3.49169  2.83593     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     29   3.09697  2.60046  3.14480  0.17734     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     30   3.09697  2.60046  3.14480  0.17734     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     31   2.95329  3.59614  0.11625  3.50169     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     32   3.44264  0.12908  3.49169  2.83593     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     33   0.86047  2.51955  0.90766  2.37434     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     34   3.09697  2.60046  3.14480  0.17734     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     35   3.44264  0.12908  3.49169  2.83593     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     36   2.95329  3.59614  0.11625  3.50169     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     37   0.14081  3.38854  2.80730  3.29098     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     38   3.09697  2.60046  3.14480  0.17734     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     39   2.95329  3.59614  0.11625  3.50169     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     40   0.14081  3.38854  2.80730  3.29098     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     41   0.14081  3.38854  2.80730  3.29098     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     42   2.95329  3.59614  0.11625  3.50169     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     43   0.14081  3.38854  2.80730  3.29098     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     44   0.14081  3.38854  2.80730  3.29098     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03671  4.01614  4.01614  1.46634  0.26236  1.09861  0.40547
+     45   3.44264  0.12908  3.49169  2.83593     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01852  3.99795        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhizaria_58S_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 14:39:14 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 708669621
+STATS LOCAL MSV       -7.6157  0.72839
+STATS LOCAL VITERBI   -8.2097  0.72839
+STATS LOCAL FORWARD   -3.6198  0.72839
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.18583  1.58669  1.49120  1.32877
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhizaria_58S_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 14:39:07 2012
+NSEQ  31
+EFFN  3.757690
+CKSUM 3240878011
+STATS LOCAL MSV       -7.2460  0.71932
+STATS LOCAL VITERBI   -7.7295  0.71932
+STATS LOCAL FORWARD   -4.3227  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16412  1.39048  1.62656  1.41782
+          1.38629  1.38629  1.38629  1.38629
+          0.03415  4.08727  4.08727  1.46634  0.26236  0.00000        *
+      1   3.58181  0.11379  3.62473  2.93607      1 - -
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+          1.38629  1.38629  1.38629  1.38629
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+     45   3.58181  0.11379  3.62473  2.93607     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01722  4.07034        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhizaria_58S_start_sevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 01:37:55 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 936571363
+STATS LOCAL MSV       -7.4273  0.72954
+STATS LOCAL VITERBI   -8.2698  0.72954
+STATS LOCAL FORWARD   -3.3835  0.72954
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21521  1.42509  1.55460  1.37996
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
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+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhizaria_58S_start_ten_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 01:38:08 2012
+NSEQ  221
+EFFN  3.469986
+CKSUM 3178722947
+STATS LOCAL MSV       -7.3549  0.71932
+STATS LOCAL VITERBI   -7.7369  0.71932
+STATS LOCAL FORWARD   -4.0992  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63448  1.53575  1.24649  1.19687
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  0.00000        *
+      1   0.18763  2.92286  2.65754  3.05390      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+      2   2.69988  0.30745  2.22941  2.40931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+      3   3.13531  2.62481  3.18166  0.17133      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+      4   2.86894  3.58577  0.12204  3.49300      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+      5   3.48606  0.12407  3.53324  2.86739      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+      6   0.14975  3.37268  2.70284  3.27630      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+      7   3.13531  2.62481  3.18166  0.17133      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+      8   2.97936  3.63424  0.11220  3.54379      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+      9   0.14692  3.38343  2.72774  3.28763      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     10   2.97936  3.63424  0.11220  3.54379     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     11   3.48606  0.12407  3.53324  2.86739     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     12   2.97936  3.63424  0.11220  3.54379     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     13   0.13597  3.42628  2.83173  3.33234     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     14   3.13531  2.62481  3.18166  0.17133     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     15   2.97936  3.63424  0.11220  3.54379     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     16   2.97936  3.63424  0.11220  3.54379     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     17   0.13597  3.42628  2.83173  3.33234     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     18   3.13531  2.62481  3.18166  0.17133     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     19   3.45123  0.12635  3.51748  2.85927     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     20   3.13531  2.62481  3.18166  0.17133     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     21   3.48606  0.12407  3.53324  2.86739     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     22   3.08717  2.50341  3.13523  0.18745     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     23   3.13531  2.62481  3.18166  0.17133     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     24   2.97936  3.63424  0.11220  3.54379     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     25   2.86894  3.58577  0.12204  3.49300     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     26   3.03546  2.58700  2.95945  0.19255     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     27   3.13531  2.62481  3.18166  0.17133     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  4.03777  3.91395  1.46634  0.26236  1.09861  0.40547
+     28   3.48143  0.12459  3.52882  2.86404     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03544  4.03544  1.46634  0.26236  1.01779  0.44846
+     29   3.48606  0.12407  3.53324  2.86739     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     30   3.09673  2.52680  3.14443  0.18417     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     31   3.09210  2.51544  3.13998  0.18575     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     32   2.97936  3.63424  0.11220  3.54379     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     33   3.48606  0.12407  3.53324  2.86739     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     34   0.13597  3.42628  2.83173  3.33234     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     35   3.13531  2.62481  3.18166  0.17133     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     36   3.48606  0.12407  3.53324  2.86739     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     37   2.97936  3.63424  0.11220  3.54379     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     38   3.09579  2.52447  3.14352  0.18449     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     39   3.13531  2.62481  3.18166  0.17133     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     40   2.86894  3.58577  0.12204  3.49300     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     41   0.13597  3.42628  2.83173  3.33234     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     42   0.14692  3.38343  2.72774  3.28763     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     43   2.97936  3.63424  0.11220  3.54379     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     44   2.97936  3.63424  0.11220  3.54379     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03591  4.03777  4.03777  1.46634  0.26236  1.09861  0.40547
+     45   3.09579  2.52447  3.14352  0.18449     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01812  4.01998        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Rhizaria_58S_start_twelve_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 01:38:58 2012
+NSEQ  14
+EFFN  3.291504
+CKSUM 1264888513
+STATS LOCAL MSV       -7.9360  0.71932
+STATS LOCAL VITERBI   -7.7626  0.71932
+STATS LOCAL FORWARD   -4.0675  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62979  1.52617  1.25455  1.19912
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  0.00000        *
+      1   0.14323  3.37023  2.79540  3.27094      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      2   3.42154  0.13160  3.47149  2.82057      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      3   3.07849  2.58870  3.12703  0.18032      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      4   2.94052  3.57756  0.11828  3.48118      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      5   3.42154  0.13160  3.47149  2.82057      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      6   0.14323  3.37023  2.79540  3.27094      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      7   3.07849  2.58870  3.12703  0.18032      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      8   2.94052  3.57756  0.11828  3.48118      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+      9   0.14323  3.37023  2.79540  3.27094      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     10   2.94052  3.57756  0.11828  3.48118     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     11   3.42154  0.13160  3.47149  2.82057     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     12   2.94052  3.57756  0.11828  3.48118     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     13   0.14323  3.37023  2.79540  3.27094     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     14   3.07849  2.58870  3.12703  0.18032     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     15   2.94052  3.57756  0.11828  3.48118     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     16   2.94052  3.57756  0.11828  3.48118     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     17   0.14323  3.37023  2.79540  3.27094     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     18   3.07849  2.58870  3.12703  0.18032     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     19   3.42154  0.13160  3.47149  2.82057     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     20   3.07849  2.58870  3.12703  0.18032     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     21   3.42154  0.13160  3.47149  2.82057     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     22   3.07849  2.58870  3.12703  0.18032     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     23   3.07849  2.58870  3.12703  0.18032     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     24   2.94052  3.57756  0.11828  3.48118     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     25   2.94052  3.57756  0.11828  3.48118     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     26   3.07849  2.58870  3.12703  0.18032     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     27   3.07849  2.58870  3.12703  0.18032     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     28   3.42154  0.13160  3.47149  2.82057     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     29   3.42154  0.13160  3.47149  2.82057     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     30   3.07849  2.58870  3.12703  0.18032     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     31   3.07849  2.58870  3.12703  0.18032     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     32   2.94052  3.57756  0.11828  3.48118     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     33   3.42154  0.13160  3.47149  2.82057     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     34   0.14323  3.37023  2.79540  3.27094     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     35   3.07849  2.58870  3.12703  0.18032     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     36   3.42154  0.13160  3.47149  2.82057     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     37   2.94052  3.57756  0.11828  3.48118     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     38   3.07849  2.58870  3.12703  0.18032     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     39   3.07849  2.58870  3.12703  0.18032     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     40   2.94052  3.57756  0.11828  3.48118     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     41   0.14323  3.37023  2.79540  3.27094     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     42   0.14323  3.37023  2.79540  3.27094     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     43   2.94052  3.57756  0.11828  3.48118     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     44   2.94052  3.57756  0.11828  3.48118     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
+     45   3.07849  2.58870  3.12703  0.18032     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01872  3.98741        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhizaria_4_LSU_start_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 15:51:35 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1950209703
+STATS LOCAL MSV       -8.0821  0.72055
+STATS LOCAL VITERBI   -7.8768  0.72055
+STATS LOCAL FORWARD   -3.2887  0.72055
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   0.97098  1.50494  1.50771  1.72686
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   0.15719  3.27118  2.73043  3.16274      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   0.15719  3.27118  2.73043  3.16274      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.97980  2.52563  3.03204  0.19727     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   0.15719  3.27118  2.73043  3.16274     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   0.15719  3.27118  2.73043  3.16274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.97980  2.52563  3.03204  0.19727     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.43223  0.62271  2.50508  1.22417     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.97980  2.52563  3.03204  0.19727     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   3.30705  0.14631  3.36166  2.73626     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   0.15719  3.27118  2.73043  3.16274     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   0.15719  3.27118  2.73043  3.16274     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   0.15719  3.27118  2.73043  3.16274     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.97980  2.52563  3.03204  0.19727     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   0.15719  3.27118  2.73043  3.16274     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.86982  3.47591  0.13017  3.36931     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   3.30705  0.14631  3.36166  2.73626     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   0.15719  3.27118  2.73043  3.16274     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   3.30705  0.14631  3.36166  2.73626     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   3.30705  0.14631  3.36166  2.73626     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhizaria_4_LSU_start_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 15:48:20 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 76545263
+STATS LOCAL MSV       -7.5144  0.72774
+STATS LOCAL VITERBI   -8.3161  0.72774
+STATS LOCAL FORWARD   -3.3498  0.72774
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29057  1.34961  1.37118  1.55242
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhizaria_4_LSU_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 15:47:38 2012
+NSEQ  12
+EFFN  3.395508
+CKSUM 2392704946
+STATS LOCAL MSV       -7.3558  0.71933
+STATS LOCAL VITERBI   -7.8378  0.71933
+STATS LOCAL FORWARD   -3.9627  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16579  1.72185  1.19494  1.57568
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  0.00000        *
+      1   2.25159  2.41497  0.52437  1.54427      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+      2   0.39984  2.76941  1.63350  2.63628      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+      3   3.11192  2.60996  3.15918  0.17496      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+      4   3.11192  2.60996  3.15918  0.17496      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+      5   2.96353  3.61108  0.11464  3.51818      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+      6   0.13889  3.40330  2.81687  3.30715      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+      7   3.45963  0.12709  3.50796  2.84827      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+      8   3.45963  0.12709  3.50796  2.84827      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+      9   3.11192  2.60996  3.15918  0.17496      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     10   2.96353  3.61108  0.11464  3.51818     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     11   0.13889  3.40330  2.81687  3.30715     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     12   0.13889  3.40330  2.81687  3.30715     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     13   2.96353  3.61108  0.11464  3.51818     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     14   3.11192  2.60996  3.15918  0.17496     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     15   2.96353  3.61108  0.11464  3.51818     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     16   0.13889  3.40330  2.81687  3.30715     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     17   2.96353  3.61108  0.11464  3.51818     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     18   2.96353  3.61108  0.11464  3.51818     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     19   3.11192  2.60996  3.15918  0.17496     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     20   0.13889  3.40330  2.81687  3.30715     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     21   0.13889  3.40330  2.81687  3.30715     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     22   2.96353  3.61108  0.11464  3.51818     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     23   0.13889  3.40330  2.81687  3.30715     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     24   2.96353  3.61108  0.11464  3.51818     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     25   2.96353  3.61108  0.11464  3.51818     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     26   0.13889  3.40330  2.81687  3.30715     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     27   3.45963  0.12709  3.50796  2.84827     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     28   3.45963  0.12709  3.50796  2.84827     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     29   2.96353  3.61108  0.11464  3.51818     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     30   2.96353  3.61108  0.11464  3.51818     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     31   3.45963  0.12709  3.50796  2.84827     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     32   3.45963  0.12709  3.50796  2.84827     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     33   2.96353  3.61108  0.11464  3.51818     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     34   0.13889  3.40330  2.81687  3.30715     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     35   0.13889  3.40330  2.81687  3.30715     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     36   3.11192  2.60996  3.15918  0.17496     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     37   3.11192  2.60996  3.15918  0.17496     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     38   3.11192  2.60996  3.15918  0.17496     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     39   0.13889  3.40330  2.81687  3.30715     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     40   0.13889  3.40330  2.81687  3.30715     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     41   2.96353  3.61108  0.11464  3.51818     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     42   3.45963  0.12709  3.50796  2.84827     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     43   0.13889  3.40330  2.81687  3.30715     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     44   3.11192  2.60996  3.15918  0.17496     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03640  4.02455  4.02455  1.46634  0.26236  1.09861  0.40547
+     45   0.13889  3.40330  2.81687  3.30715     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01836  4.00652        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhizaria_4_LSU_start_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 15:48:49 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3237321859
+STATS LOCAL MSV       -7.5995  0.72817
+STATS LOCAL VITERBI   -8.1354  0.72817
+STATS LOCAL FORWARD   -3.3775  0.72817
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.09658  1.59494  1.48795  1.43871
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhizaria_4_LSU_start_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 15:48:38 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 403866154
+STATS LOCAL MSV       -7.4438  0.72795
+STATS LOCAL VITERBI   -8.2841  0.72795
+STATS LOCAL FORWARD   -3.4575  0.72795
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40871  1.09677  1.57805  1.53611
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhizaria_4_LSU_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 15:48:01 2012
+NSEQ  7
+EFFN  3.387207
+CKSUM 685879422
+STATS LOCAL MSV       -7.6313  0.71931
+STATS LOCAL VITERBI   -7.5788  0.71931
+STATS LOCAL FORWARD   -4.0483  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.10662  1.52111  1.60238  1.38853
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  0.00000        *
+      1   3.10929  2.60829  3.15665  0.17538      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+      2   3.45664  0.12744  3.50510  2.84610      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+      3   3.10929  2.60829  3.15665  0.17538      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+      4   0.13923  3.40070  2.81518  3.30431      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+      5   2.96173  3.60845  0.11492  3.51528      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+      6   0.13923  3.40070  2.81518  3.30431      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+      7   3.10929  2.60829  3.15665  0.17538      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+      8   3.45664  0.12744  3.50510  2.84610      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+      9   3.10929  2.60829  3.15665  0.17538      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     10   3.45664  0.12744  3.50510  2.84610     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     11   0.13923  3.40070  2.81518  3.30431     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     12   0.13923  3.40070  2.81518  3.30431     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     13   0.13923  3.40070  2.81518  3.30431     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     14   3.10929  2.60829  3.15665  0.17538     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     15   2.96173  3.60845  0.11492  3.51528     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     16   0.13923  3.40070  2.81518  3.30431     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     17   2.96173  3.60845  0.11492  3.51528     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     18   2.96173  3.60845  0.11492  3.51528     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     19   3.10929  2.60829  3.15665  0.17538     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     20   0.13923  3.40070  2.81518  3.30431     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     21   0.13923  3.40070  2.81518  3.30431     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     22   2.96173  3.60845  0.11492  3.51528     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     23   0.13923  3.40070  2.81518  3.30431     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     24   3.45664  0.12744  3.50510  2.84610     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     25   3.10929  2.60829  3.15665  0.17538     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     26   0.13923  3.40070  2.81518  3.30431     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     27   3.45664  0.12744  3.50510  2.84610     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     28   3.45664  0.12744  3.50510  2.84610     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     29   3.45664  0.12744  3.50510  2.84610     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     30   2.96173  3.60845  0.11492  3.51528     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     31   3.45664  0.12744  3.50510  2.84610     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     32   3.10929  2.60829  3.15665  0.17538     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     33   2.96173  3.60845  0.11492  3.51528     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     34   0.13923  3.40070  2.81518  3.30431     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     35   0.13923  3.40070  2.81518  3.30431     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     36   2.56748  1.47198  2.63418  0.47478     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     37   3.10929  2.60829  3.15665  0.17538     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     38   3.10929  2.60829  3.15665  0.17538     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     39   0.13923  3.40070  2.81518  3.30431     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     40   0.13923  3.40070  2.81518  3.30431     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     41   2.96173  3.60845  0.11492  3.51528     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     42   3.45664  0.12744  3.50510  2.84610     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     43   0.13923  3.40070  2.81518  3.30431     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     44   3.10929  2.60829  3.15665  0.17538     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03645  4.02306  4.02306  1.46634  0.26236  1.09861  0.40547
+     45   0.13923  3.40070  2.81518  3.30431     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01839  4.00500        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhizaria_4_LSU_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 15:47:48 2012
+NSEQ  14
+EFFN  3.359863
+CKSUM 3152799616
+STATS LOCAL MSV       -8.0137  0.71932
+STATS LOCAL VITERBI   -7.4927  0.71932
+STATS LOCAL FORWARD   -4.0641  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.05417  1.49407  1.51699  1.57170
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  0.00000        *
+      1   0.14034  3.39209  2.80960  3.29488      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+      2   3.44674  0.12859  3.49562  2.83891      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+      3   0.14034  3.39209  2.80960  3.29488      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+      4   0.14034  3.39209  2.80960  3.29488      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+      5   2.95576  3.59975  0.11586  3.50566      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+      6   0.14034  3.39209  2.80960  3.29488      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+      7   3.10057  2.60274  3.14826  0.17676      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+      8   3.44674  0.12859  3.49562  2.83891      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+      9   3.10057  2.60274  3.14826  0.17676      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     10   3.44674  0.12859  3.49562  2.83891     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     11   0.14034  3.39209  2.80960  3.29488     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     12   2.95576  3.59975  0.11586  3.50566     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     13   0.14034  3.39209  2.80960  3.29488     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     14   3.10057  2.60274  3.14826  0.17676     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     15   2.95576  3.59975  0.11586  3.50566     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     16   0.14034  3.39209  2.80960  3.29488     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     17   2.95576  3.59975  0.11586  3.50566     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     18   2.95576  3.59975  0.11586  3.50566     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     19   3.10057  2.60274  3.14826  0.17676     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     20   0.14034  3.39209  2.80960  3.29488     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     21   0.14034  3.39209  2.80960  3.29488     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     22   2.95576  3.59975  0.11586  3.50566     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     23   0.14034  3.39209  2.80960  3.29488     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     24   2.88818  0.29626  2.95301  1.90684     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     25   3.10057  2.60274  3.14826  0.17676     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     26   0.14034  3.39209  2.80960  3.29488     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     27   3.44674  0.12859  3.49562  2.83891     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     28   3.44674  0.12859  3.49562  2.83891     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     29   3.44674  0.12859  3.49562  2.83891     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     30   2.95576  3.59975  0.11586  3.50566     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     31   3.44674  0.12859  3.49562  2.83891     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     32   2.88818  0.29626  2.95301  1.90684     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     33   2.95576  3.59975  0.11586  3.50566     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     34   0.14034  3.39209  2.80960  3.29488     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     35   0.14034  3.39209  2.80960  3.29488     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     36   3.10057  2.60274  3.14826  0.17676     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     37   3.10057  2.60274  3.14826  0.17676     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     38   3.10057  2.60274  3.14826  0.17676     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     39   0.14034  3.39209  2.80960  3.29488     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     40   0.14034  3.39209  2.80960  3.29488     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     41   2.95576  3.59975  0.11586  3.50566     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     42   3.44674  0.12859  3.49562  2.83891     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     43   0.14034  3.39209  2.80960  3.29488     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     44   3.10057  2.60274  3.14826  0.17676     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
+     45   0.14034  3.39209  2.80960  3.29488     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01849  4.00001        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhizaria_4_LSU_start_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 01:12:25 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 731854382
+STATS LOCAL MSV       -8.0759  0.72023
+STATS LOCAL VITERBI   -7.8499  0.72023
+STATS LOCAL FORWARD   -3.7973  0.72023
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28009  1.32699  1.44837  1.50615
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.86982  3.47591  0.13017  3.36931      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   3.30705  0.14631  3.36166  2.73626     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   0.15719  3.27118  2.73043  3.16274     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   0.15719  3.27118  2.73043  3.16274     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.86982  3.47591  0.13017  3.36931     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.97980  2.52563  3.03204  0.19727     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.86982  3.47591  0.13017  3.36931     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   0.15719  3.27118  2.73043  3.16274     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.86982  3.47591  0.13017  3.36931     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhizaria_4_LSU_start_eleven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 01:12:42 2012
+NSEQ  9
+EFFN  3.186035
+CKSUM 3916008225
+STATS LOCAL MSV       -8.0561  0.71933
+STATS LOCAL VITERBI   -7.8429  0.71933
+STATS LOCAL FORWARD   -3.9050  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.15899  1.72776  1.18469  1.59616
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  0.00000        *
+      1   2.91604  3.54214  0.12228  3.44213      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+      2   0.14795  3.33550  2.77275  3.23296      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+      3   3.04365  2.56650  3.09351  0.18610      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+      4   3.04365  2.56650  3.09351  0.18610      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+      5   2.91604  3.54214  0.12228  3.44213      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+      6   0.14795  3.33550  2.77275  3.23296      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+      7   3.38146  0.13654  3.43308  2.79124      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+      8   3.38146  0.13654  3.43308  2.79124      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+      9   3.04365  2.56650  3.09351  0.18610      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     10   2.91604  3.54214  0.12228  3.44213     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     11   0.14795  3.33550  2.77275  3.23296     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     12   0.14795  3.33550  2.77275  3.23296     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     13   2.91604  3.54214  0.12228  3.44213     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     14   3.04365  2.56650  3.09351  0.18610     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     15   2.91604  3.54214  0.12228  3.44213     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     16   0.14795  3.33550  2.77275  3.23296     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     17   2.91604  3.54214  0.12228  3.44213     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     18   2.91604  3.54214  0.12228  3.44213     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     19   3.04365  2.56650  3.09351  0.18610     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     20   0.14795  3.33550  2.77275  3.23296     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     21   0.14795  3.33550  2.77275  3.23296     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     22   2.91604  3.54214  0.12228  3.44213     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     23   0.14795  3.33550  2.77275  3.23296     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     24   2.91604  3.54214  0.12228  3.44213     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     25   2.91604  3.54214  0.12228  3.44213     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     26   0.14795  3.33550  2.77275  3.23296     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     27   3.38146  0.13654  3.43308  2.79124     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     28   3.38146  0.13654  3.43308  2.79124     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     29   2.91604  3.54214  0.12228  3.44213     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     30   2.91604  3.54214  0.12228  3.44213     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     31   3.38146  0.13654  3.43308  2.79124     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     32   3.38146  0.13654  3.43308  2.79124     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     33   2.91604  3.54214  0.12228  3.44213     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     34   0.14795  3.33550  2.77275  3.23296     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     35   0.14795  3.33550  2.77275  3.23296     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     36   3.04365  2.56650  3.09351  0.18610     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     37   3.04365  2.56650  3.09351  0.18610     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     38   3.04365  2.56650  3.09351  0.18610     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     39   0.14795  3.33550  2.77275  3.23296     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     40   0.14795  3.33550  2.77275  3.23296     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     41   2.91604  3.54214  0.12228  3.44213     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     42   3.38146  0.13654  3.43308  2.79124     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     43   0.14795  3.33550  2.77275  3.23296     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     44   3.04365  2.56650  3.09351  0.18610     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03784  3.98639  3.98639  1.46634  0.26236  1.09861  0.40547
+     45   0.14795  3.33550  2.77275  3.23296     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01910  3.96765        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhizaria_4_LSU_start_fiveb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 01:11:06 2012
+NSEQ  8
+EFFN  3.277344
+CKSUM 3075067396
+STATS LOCAL MSV       -8.2566  0.71933
+STATS LOCAL VITERBI   -7.5856  0.71933
+STATS LOCAL FORWARD   -4.0430  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.05761  1.62227  1.51735  1.44404
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  0.00000        *
+      1   3.41625  0.13224  3.46642  2.81671      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      2   0.14384  3.36564  2.79241  3.26592      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      3   0.14384  3.36564  2.79241  3.26592      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      4   0.14384  3.36564  2.79241  3.26592      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      5   2.93730  3.57289  0.11880  3.47603      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      6   0.14384  3.36564  2.79241  3.26592      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      7   3.07387  2.58576  3.12259  0.18107      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      8   3.41625  0.13224  3.46642  2.81671      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+      9   3.07387  2.58576  3.12259  0.18107      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     10   3.41625  0.13224  3.46642  2.81671     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     11   0.14384  3.36564  2.79241  3.26592     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     12   0.14384  3.36564  2.79241  3.26592     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     13   0.14384  3.36564  2.79241  3.26592     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     14   3.07387  2.58576  3.12259  0.18107     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     15   2.93730  3.57289  0.11880  3.47603     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     16   0.14384  3.36564  2.79241  3.26592     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     17   2.93730  3.57289  0.11880  3.47603     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     18   2.93730  3.57289  0.11880  3.47603     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     19   3.07387  2.58576  3.12259  0.18107     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     20   0.14384  3.36564  2.79241  3.26592     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     21   2.93730  3.57289  0.11880  3.47603     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     22   2.93730  3.57289  0.11880  3.47603     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     23   0.14384  3.36564  2.79241  3.26592     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     24   3.07387  2.58576  3.12259  0.18107     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     25   3.07387  2.58576  3.12259  0.18107     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     26   0.14384  3.36564  2.79241  3.26592     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     27   3.41625  0.13224  3.46642  2.81671     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     28   3.41625  0.13224  3.46642  2.81671     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     29   3.41625  0.13224  3.46642  2.81671     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     30   2.93730  3.57289  0.11880  3.47603     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     31   3.41625  0.13224  3.46642  2.81671     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     32   3.07387  2.58576  3.12259  0.18107     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     33   2.93730  3.57289  0.11880  3.47603     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     34   0.14384  3.36564  2.79241  3.26592     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     35   0.14384  3.36564  2.79241  3.26592     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     36   3.07387  2.58576  3.12259  0.18107     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     37   3.07387  2.58576  3.12259  0.18107     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     38   3.07387  2.58576  3.12259  0.18107     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     39   0.14384  3.36564  2.79241  3.26592     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     40   0.14384  3.36564  2.79241  3.26592     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     41   2.93730  3.57289  0.11880  3.47603     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     42   3.41625  0.13224  3.46642  2.81671     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     43   0.14384  3.36564  2.79241  3.26592     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     44   3.07387  2.58576  3.12259  0.18107     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
+     45   0.14384  3.36564  2.79241  3.26592     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01877  3.98478        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhizaria_4_LSU_start_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 01:12:14 2012
+NSEQ  8
+EFFN  3.433594
+CKSUM 2840026670
+STATS LOCAL MSV       -7.5443  0.71933
+STATS LOCAL VITERBI   -7.7493  0.71933
+STATS LOCAL FORWARD   -3.7240  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.06709  1.60222  1.43710  1.52819
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  0.00000        *
+      1   0.13738  3.41512  2.82452  3.32011      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      2   0.49961  1.66480  2.29793  2.26785      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      3   0.13738  3.41512  2.82452  3.32011      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      4   0.13738  3.41512  2.82452  3.32011      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      5   2.97169  3.62301  0.11337  3.53137      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      6   3.12394  2.61759  3.17074  0.17309      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      7   3.47324  0.12552  3.52097  2.85812      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      8   3.12394  2.61759  3.17074  0.17309      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+      9   3.47324  0.12552  3.52097  2.85812      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     10   0.13738  3.41512  2.82452  3.32011     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     11   0.13738  3.41512  2.82452  3.32011     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     12   2.97169  3.62301  0.11337  3.53137     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     13   3.12394  2.61759  3.17074  0.17309     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     14   2.97169  3.62301  0.11337  3.53137     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     15   0.13738  3.41512  2.82452  3.32011     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     16   0.13738  3.41512  2.82452  3.32011     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     17   2.97169  3.62301  0.11337  3.53137     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     18   2.62679  1.57386  2.69172  0.42666     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     19   0.13738  3.41512  2.82452  3.32011     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     20   0.13738  3.41512  2.82452  3.32011     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     21   2.97169  3.62301  0.11337  3.53137     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     22   2.97169  3.62301  0.11337  3.53137     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     23   3.47324  0.12552  3.52097  2.85812     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     24   2.97169  3.62301  0.11337  3.53137     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     25   0.13738  3.41512  2.82452  3.32011     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     26   3.47324  0.12552  3.52097  2.85812     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     27   3.47324  0.12552  3.52097  2.85812     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     28   3.47324  0.12552  3.52097  2.85812     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     29   2.97169  3.62301  0.11337  3.53137     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     30   3.47324  0.12552  3.52097  2.85812     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     31   3.12394  2.61759  3.17074  0.17309     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     32   2.97169  3.62301  0.11337  3.53137     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     33   0.13738  3.41512  2.82452  3.32011     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     34   0.13738  3.41512  2.82452  3.32011     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     35   3.12394  2.61759  3.17074  0.17309     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     36   3.12394  2.61759  3.17074  0.17309     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     37   3.12394  2.61759  3.17074  0.17309     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     38   0.13738  3.41512  2.82452  3.32011     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     39   0.13738  3.41512  2.82452  3.32011     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     40   2.97169  3.62301  0.11337  3.53137     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     41   3.47324  0.12552  3.52097  2.85812     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     42   0.13738  3.41512  2.82452  3.32011     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     43   3.12394  2.61759  3.17074  0.17309     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     44   0.13738  3.41512  2.82452  3.32011     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03133  4.03133  1.46634  0.26236  1.09861  0.40547
+     45   3.12394  2.61759  3.17074  0.17309     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01824  4.01342        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhizaria_4_LSU_start_sixb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 01:11:19 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2457692988
+STATS LOCAL MSV       -7.5215  0.72807
+STATS LOCAL VITERBI   -8.1900  0.72807
+STATS LOCAL FORWARD   -3.3812  0.72807
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   0.97738  1.41032  1.70842  1.61703
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.81865  0.23582  2.88868  2.35662     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhizaria_4_LSU_start_ten_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Jan 20 15:56:55 2012
+NSEQ  23
+EFFN  3.220337
+CKSUM 656820074
+STATS LOCAL MSV       -8.1133  0.71932
+STATS LOCAL VITERBI   -7.8470  0.71932
+STATS LOCAL FORWARD   -4.0798  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.10983  1.47054  1.44208  1.58890
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  0.00000        *
+      1   0.14638  3.34693  2.78022  3.24546      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+      2   2.92413  3.55382  0.12094  3.45500      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+      3   2.92413  3.55382  0.12094  3.45500      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+      4   3.39466  0.13489  3.44573  2.80092      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+      5   0.14638  3.34693  2.78022  3.24546      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+      6   3.39466  0.13489  3.44573  2.80092      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+      7   0.14638  3.34693  2.78022  3.24546      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+      8   3.05509  2.57380  3.10452  0.18418      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+      9   3.39466  0.13489  3.44573  2.80092      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     10   0.14638  3.34693  2.78022  3.24546     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     11   2.92413  3.55382  0.12094  3.45500     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     12   3.39466  0.13489  3.44573  2.80092     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     13   3.05509  2.57380  3.10452  0.18418     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     14   3.39466  0.13489  3.44573  2.80092     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     15   2.92413  3.55382  0.12094  3.45500     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     16   0.14638  3.34693  2.78022  3.24546     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     17   2.92413  3.55382  0.12094  3.45500     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     18   3.05509  2.57380  3.10452  0.18418     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     19   2.92413  3.55382  0.12094  3.45500     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     20   0.14638  3.34693  2.78022  3.24546     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     21   2.92413  3.55382  0.12094  3.45500     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     22   2.92413  3.55382  0.12094  3.45500     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     23   0.14638  3.34693  2.78022  3.24546     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     24   3.05509  2.57380  3.10452  0.18418     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     25   0.14638  3.34693  2.78022  3.24546     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     26   3.39466  0.13489  3.44573  2.80092     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     27   2.92413  3.55382  0.12094  3.45500     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     28   3.39466  0.13489  3.44573  2.80092     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     29   2.92413  3.55382  0.12094  3.45500     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     30   3.39466  0.13489  3.44573  2.80092     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     31   3.05509  2.57380  3.10452  0.18418     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     32   0.14638  3.34693  2.78022  3.24546     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     33   0.14638  3.34693  2.78022  3.24546     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     34   0.14638  3.34693  2.78022  3.24546     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     35   3.39466  0.13489  3.44573  2.80092     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     36   3.05509  2.57380  3.10452  0.18418     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     37   3.05509  2.57380  3.10452  0.18418     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     38   0.14638  3.34693  2.78022  3.24546     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     39   0.14638  3.34693  2.78022  3.24546     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     40   0.14638  3.34693  2.78022  3.24546     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     41   3.39466  0.13489  3.44573  2.80092     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     42   0.14638  3.34693  2.78022  3.24546     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     43   3.05509  2.57380  3.10452  0.18418     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     44   0.14638  3.34693  2.78022  3.24546     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
+     45   3.05509  2.57380  3.10452  0.18418     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01897  3.97412        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Rhizaria_4_LSU_start_threeb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 01:10:48 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 599151012
+STATS LOCAL MSV       -7.4804  0.72817
+STATS LOCAL VITERBI   -8.1165  0.72817
+STATS LOCAL FORWARD   -3.4979  0.72817
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.09588  1.59613  1.48788  1.43875
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Rhizaria_1_SSU_end_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 02:47:07 2012
+NSEQ  9
+EFFN  3.344238
+CKSUM 2541343808
+STATS LOCAL MSV       -8.0722  0.71932
+STATS LOCAL VITERBI   -7.8311  0.71932
+STATS LOCAL FORWARD   -4.0456  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.09860  1.66560  1.29697  1.58852
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  0.00000        *
+      1   0.14099  3.38714  2.80639  3.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+      2   2.95232  3.59473  0.11640  3.50012      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+      3   3.09556  2.59956  3.14345  0.17756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+      4   3.44103  0.12927  3.49015  2.83476      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+      5   2.95232  3.59473  0.11640  3.50012      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+      6   3.09556  2.59956  3.14345  0.17756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+      7   0.14099  3.38714  2.80639  3.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+      8   0.14099  3.38714  2.80639  3.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+      9   3.44103  0.12927  3.49015  2.83476      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     10   0.14099  3.38714  2.80639  3.28946     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     11   0.14099  3.38714  2.80639  3.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     12   2.95232  3.59473  0.11640  3.50012     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     13   2.95232  3.59473  0.11640  3.50012     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     14   3.44103  0.12927  3.49015  2.83476     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     15   0.14099  3.38714  2.80639  3.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     16   3.09556  2.59956  3.14345  0.17756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     17   3.44103  0.12927  3.49015  2.83476     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     18   0.14099  3.38714  2.80639  3.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     19   2.95232  3.59473  0.11640  3.50012     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     20   3.09556  2.59956  3.14345  0.17756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     21   0.14099  3.38714  2.80639  3.28946     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     22   2.95232  3.59473  0.11640  3.50012     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     23   2.95232  3.59473  0.11640  3.50012     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     24   3.09556  2.59956  3.14345  0.17756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     25   2.95232  3.59473  0.11640  3.50012     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     26   0.14099  3.38714  2.80639  3.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     27   0.14099  3.38714  2.80639  3.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     28   2.71758  0.29638  2.29202  2.41461     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     29   3.44103  0.12927  3.49015  2.83476     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     30   3.09556  2.59956  3.14345  0.17756     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     31   2.95232  3.59473  0.11640  3.50012     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     32   3.44103  0.12927  3.49015  2.83476     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     33   0.14099  3.38714  2.80639  3.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     34   2.95232  3.59473  0.11640  3.50012     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     35   0.14099  3.38714  2.80639  3.28946     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     36   0.14099  3.38714  2.80639  3.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     37   2.95232  3.59473  0.11640  3.50012     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     38   2.95232  3.59473  0.11640  3.50012     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     39   0.14099  3.38714  2.80639  3.28946     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     40   3.09556  2.59956  3.14345  0.17756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     41   2.22549  0.30216  2.77330  2.40447     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     42   0.14099  3.38714  2.80639  3.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     43   3.09556  2.59956  3.14345  0.17756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     44   3.09556  2.59956  3.14345  0.17756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03674  4.01534  4.01534  1.46634  0.26236  1.09861  0.40547
+     45   0.14099  3.38714  2.80639  3.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01854  3.99714        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Rhizaria_1_SSU_end_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 02:46:45 2012
+NSEQ  28
+EFFN  3.202637
+CKSUM 173814394
+STATS LOCAL MSV       -7.9514  0.71931
+STATS LOCAL VITERBI   -7.8681  0.71931
+STATS LOCAL FORWARD   -3.8589  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.15846  1.63373  1.24319  1.59767
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  0.00000        *
+      1   0.14718  3.34105  2.77638  3.23903      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+      2   2.91997  3.54781  0.12163  3.44838      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+      3   3.04920  2.57004  3.09885  0.18516      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+      4   3.38787  0.13574  3.43922  2.79594      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+      5   2.91997  3.54781  0.12163  3.44838      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.08261  3.98947  2.80042  1.46634  0.26236  1.09861  0.40547
+      6   2.97071  2.51979  3.02329  0.19892      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03942  3.94628  3.94628  1.46634  0.26236  0.47562  0.97153
+      7   0.14718  3.34105  2.77638  3.23903      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+      8   0.14718  3.34105  2.77638  3.23903      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+      9   3.38787  0.13574  3.43922  2.79594      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     10   0.14718  3.34105  2.77638  3.23903     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     11   0.14718  3.34105  2.77638  3.23903     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     12   2.91997  3.54781  0.12163  3.44838     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     13   2.91997  3.54781  0.12163  3.44838     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     14   3.38787  0.13574  3.43922  2.79594     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     15   0.14718  3.34105  2.77638  3.23903     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     16   3.04920  2.57004  3.09885  0.18516     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     17   3.38787  0.13574  3.43922  2.79594     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     18   2.91997  3.54781  0.12163  3.44838     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     19   2.91997  3.54781  0.12163  3.44838     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     20   3.04920  2.57004  3.09885  0.18516     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     21   0.14718  3.34105  2.77638  3.23903     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     22   2.91997  3.54781  0.12163  3.44838     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     23   2.91997  3.54781  0.12163  3.44838     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     24   3.04920  2.57004  3.09885  0.18516     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     25   2.91997  3.54781  0.12163  3.44838     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     26   0.14718  3.34105  2.77638  3.23903     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     27   0.14718  3.34105  2.77638  3.23903     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     28   3.38787  0.13574  3.43922  2.79594     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     29   3.38787  0.13574  3.43922  2.79594     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     30   3.04920  2.57004  3.09885  0.18516     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     31   2.91997  3.54781  0.12163  3.44838     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     32   3.38787  0.13574  3.43922  2.79594     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     33   0.14718  3.34105  2.77638  3.23903     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     34   2.91997  3.54781  0.12163  3.44838     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     35   0.14718  3.34105  2.77638  3.23903     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     36   0.14718  3.34105  2.77638  3.23903     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     37   2.91997  3.54781  0.12163  3.44838     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     38   2.91997  3.54781  0.12163  3.44838     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     39   0.14718  3.34105  2.77638  3.23903     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     40   3.04920  2.57004  3.09885  0.18516     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     41   3.38787  0.13574  3.43922  2.79594     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     42   0.14718  3.34105  2.77638  3.23903     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     43   3.04920  2.57004  3.09885  0.18516     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     44   3.04920  2.57004  3.09885  0.18516     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03772  3.98947  3.98947  1.46634  0.26236  1.09861  0.40547
+     45   0.14718  3.34105  2.77638  3.23903     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01904  3.97079        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Rhizaria_1_SSU_end_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 02:46:30 2012
+NSEQ  6
+EFFN  3.325195
+CKSUM 4117779485
+STATS LOCAL MSV       -8.0198  0.71933
+STATS LOCAL VITERBI   -7.7895  0.71933
+STATS LOCAL FORWARD   -3.9838  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.13372  1.63099  1.27909  1.58896
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  0.00000        *
+      1   0.14179  3.38107  2.80245  3.28281      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      2   2.94809  3.58857  0.11707  3.49333      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      3   3.08942  2.59566  3.13755  0.17855      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      4   3.43404  0.13010  3.48346  2.82967      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      5   2.94809  3.58857  0.11707  3.49333      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      6   3.08942  2.59566  3.13755  0.17855      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      7   0.14179  3.38107  2.80245  3.28281      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      8   0.14179  3.38107  2.80245  3.28281      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      9   3.43404  0.13010  3.48346  2.82967      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     10   0.14179  3.38107  2.80245  3.28281     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     11   0.14179  3.38107  2.80245  3.28281     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     12   2.94809  3.58857  0.11707  3.49333     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     13   2.94809  3.58857  0.11707  3.49333     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     14   3.43404  0.13010  3.48346  2.82967     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     15   0.14179  3.38107  2.80245  3.28281     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     16   3.08942  2.59566  3.13755  0.17855     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     17   3.43404  0.13010  3.48346  2.82967     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     18   0.86143  2.51567  0.90836  2.37033     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     19   2.94809  3.58857  0.11707  3.49333     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     20   3.08942  2.59566  3.13755  0.17855     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     21   0.14179  3.38107  2.80245  3.28281     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     22   2.94809  3.58857  0.11707  3.49333     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     23   2.94809  3.58857  0.11707  3.49333     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     24   3.08942  2.59566  3.13755  0.17855     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     25   2.94809  3.58857  0.11707  3.49333     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     26   0.14179  3.38107  2.80245  3.28281     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     27   0.14179  3.38107  2.80245  3.28281     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     28   3.43404  0.13010  3.48346  2.82967     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     29   3.43404  0.13010  3.48346  2.82967     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     30   3.08942  2.59566  3.13755  0.17855     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     31   2.94809  3.58857  0.11707  3.49333     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     32   3.43404  0.13010  3.48346  2.82967     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     33   0.14179  3.38107  2.80245  3.28281     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     34   2.94809  3.58857  0.11707  3.49333     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     35   0.14179  3.38107  2.80245  3.28281     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     36   0.14179  3.38107  2.80245  3.28281     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     37   2.94809  3.58857  0.11707  3.49333     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     38   2.94809  3.58857  0.11707  3.49333     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     39   0.14179  3.38107  2.80245  3.28281     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     40   3.08942  2.59566  3.13755  0.17855     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     41   3.43404  0.13010  3.48346  2.82967     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     42   0.14179  3.38107  2.80245  3.28281     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     43   3.08942  2.59566  3.13755  0.17855     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     44   3.08942  2.59566  3.13755  0.17855     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     45   0.14179  3.38107  2.80245  3.28281     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01860  3.99364        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Rhizaria_1_SSU_end_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 02:47:20 2012
+NSEQ  16
+EFFN  3.269531
+CKSUM 4070040162
+STATS LOCAL MSV       -8.0187  0.71931
+STATS LOCAL VITERBI   -7.6599  0.71931
+STATS LOCAL FORWARD   -4.0885  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26783  1.62578  1.24505  1.45297
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  0.00000        *
+      1   0.14418  3.36310  2.79076  3.26314      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      2   2.93551  3.57031  0.11909  3.47317      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      3   3.07131  2.58413  3.12013  0.18149      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      4   3.41331  0.13259  3.46361  2.81457      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      5   2.93551  3.57031  0.11909  3.47317      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      6   3.07131  2.58413  3.12013  0.18149      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      7   0.14418  3.36310  2.79076  3.26314      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      8   0.14418  3.36310  2.79076  3.26314      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      9   3.41331  0.13259  3.46361  2.81457      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     10   0.14418  3.36310  2.79076  3.26314     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     11   0.14418  3.36310  2.79076  3.26314     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     12   2.93551  3.57031  0.11909  3.47317     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     13   2.93551  3.57031  0.11909  3.47317     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     14   3.07131  2.58413  3.12013  0.18149     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     15   3.07131  2.58413  3.12013  0.18149     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     16   3.07131  2.58413  3.12013  0.18149     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     17   3.41331  0.13259  3.46361  2.81457     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     18   3.41331  0.13259  3.46361  2.81457     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     19   2.93551  3.57031  0.11909  3.47317     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     20   3.07131  2.58413  3.12013  0.18149     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     21   0.14418  3.36310  2.79076  3.26314     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     22   2.93551  3.57031  0.11909  3.47317     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     23   2.93551  3.57031  0.11909  3.47317     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     24   3.07131  2.58413  3.12013  0.18149     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     25   2.93551  3.57031  0.11909  3.47317     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     26   0.14418  3.36310  2.79076  3.26314     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     27   0.14418  3.36310  2.79076  3.26314     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     28   3.41331  0.13259  3.46361  2.81457     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     29   3.41331  0.13259  3.46361  2.81457     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     30   2.32277  2.42204  2.75037  0.28854     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     31   2.93551  3.57031  0.11909  3.47317     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     32   3.41331  0.13259  3.46361  2.81457     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     33   2.93551  3.57031  0.11909  3.47317     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     34   2.93551  3.57031  0.11909  3.47317     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     35   0.14418  3.36310  2.79076  3.26314     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     36   0.14418  3.36310  2.79076  3.26314     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     37   2.93551  3.57031  0.11909  3.47317     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     38   2.93551  3.57031  0.11909  3.47317     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     39   0.14418  3.36310  2.79076  3.26314     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     40   3.07131  2.58413  3.12013  0.18149     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     41   3.41331  0.13259  3.46361  2.81457     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     42   0.14418  3.36310  2.79076  3.26314     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     43   3.07131  2.58413  3.12013  0.18149     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     44   3.07131  2.58413  3.12013  0.18149     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     45   0.14418  3.36310  2.79076  3.26314     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01880  3.98333        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Rhizaria_1_SSU_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 02:45:40 2012
+NSEQ  29
+EFFN  3.366577
+CKSUM 2032687351
+STATS LOCAL MSV       -8.0108  0.71931
+STATS LOCAL VITERBI   -7.6631  0.71931
+STATS LOCAL FORWARD   -4.1093  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27825  1.61970  1.24244  1.44886
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  0.00000        *
+      1   0.14007  3.39421  2.81098  3.29720      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+      2   2.95723  3.60189  0.11562  3.50803      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+      3   3.10271  2.60411  3.15033  0.17642      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+      4   3.44918  0.12831  3.49795  2.84068      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+      5   2.95723  3.60189  0.11562  3.50803      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+      6   3.10271  2.60411  3.15033  0.17642      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+      7   0.14007  3.39421  2.81098  3.29720      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+      8   0.19533  2.82319  2.68717  2.99676      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+      9   3.44918  0.12831  3.49795  2.84068      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     10   0.14007  3.39421  2.81098  3.29720     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     11   0.14007  3.39421  2.81098  3.29720     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     12   2.95723  3.60189  0.11562  3.50803     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     13   2.95723  3.60189  0.11562  3.50803     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     14   3.10271  2.60411  3.15033  0.17642     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     15   3.10271  2.60411  3.15033  0.17642     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     16   3.10271  2.60411  3.15033  0.17642     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     17   3.44918  0.12831  3.49795  2.84068     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     18   3.44918  0.12831  3.49795  2.84068     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     19   2.95723  3.60189  0.11562  3.50803     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     20   3.10271  2.60411  3.15033  0.17642     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     21   0.28448  2.54998  2.51260  2.42523     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     22   2.95723  3.60189  0.11562  3.50803     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     23   2.95723  3.60189  0.11562  3.50803     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     24   3.10271  2.60411  3.15033  0.17642     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     25   2.95723  3.60189  0.11562  3.50803     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     26   0.14007  3.39421  2.81098  3.29720     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     27   0.14007  3.39421  2.81098  3.29720     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     28   3.44918  0.12831  3.49795  2.84068     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     29   3.44918  0.12831  3.49795  2.84068     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     30   2.20930  2.40656  2.70539  0.31026     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     31   2.95723  3.60189  0.11562  3.50803     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     32   3.44918  0.12831  3.49795  2.84068     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     33   2.95723  3.60189  0.11562  3.50803     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     34   2.95723  3.60189  0.11562  3.50803     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     35   0.14007  3.39421  2.81098  3.29720     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     36   0.14007  3.39421  2.81098  3.29720     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     37   2.95723  3.60189  0.11562  3.50803     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     38   2.95723  3.60189  0.11562  3.50803     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     39   0.14007  3.39421  2.81098  3.29720     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     40   3.10271  2.60411  3.15033  0.17642     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     41   3.44918  0.12831  3.49795  2.84068     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     42   0.14007  3.39421  2.81098  3.29720     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     43   3.10271  2.60411  3.15033  0.17642     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     44   3.10271  2.60411  3.15033  0.17642     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03659  4.01937  4.01937  1.46634  0.26236  1.09861  0.40547
+     45   0.14007  3.39421  2.81098  3.29720     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01846  4.00124        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Rhizaria_1_SSU_end_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 02:46:56 2012
+NSEQ  79
+EFFN  3.273987
+CKSUM 3260105086
+STATS LOCAL MSV       -7.8870  0.71932
+STATS LOCAL VITERBI   -7.7661  0.71932
+STATS LOCAL FORWARD   -3.9848  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27113  1.54768  1.24856  1.51492
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  0.00000        *
+      1   0.14399  3.36455  2.79170  3.26473      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+      2   2.93653  3.57178  0.11892  3.47480      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+      3   3.07277  2.58506  3.12153  0.18125      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+      4   3.41499  0.13239  3.46521  2.81579      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+      5   2.70587  3.46056  0.14274  3.35827      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+      6   3.07277  2.58506  3.12153  0.18125      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+      7   0.14399  3.36455  2.79170  3.26473      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+      8   0.14399  3.36455  2.79170  3.26473      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+      9   3.41499  0.13239  3.46521  2.81579      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     10   0.14399  3.36455  2.79170  3.26473     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     11   0.14399  3.36455  2.79170  3.26473     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     12   2.81580  3.33051  0.15813  2.98316     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     13   2.93653  3.57178  0.11892  3.47480     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     14   3.41499  0.13239  3.46521  2.81579     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     15   0.14399  3.36455  2.79170  3.26473     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     16   3.07277  2.58506  3.12153  0.18125     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     17   3.41499  0.13239  3.46521  2.81579     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     18   2.93653  3.57178  0.11892  3.47480     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     19   2.93653  3.57178  0.11892  3.47480     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     20   3.07277  2.58506  3.12153  0.18125     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     21   0.14399  3.36455  2.79170  3.26473     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     22   2.93653  3.57178  0.11892  3.47480     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     23   2.93653  3.57178  0.11892  3.47480     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     24   3.07277  2.58506  3.12153  0.18125     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     25   2.93653  3.57178  0.11892  3.47480     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     26   0.14399  3.36455  2.79170  3.26473     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     27   0.14399  3.36455  2.79170  3.26473     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     28   3.41499  0.13239  3.46521  2.81579     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     29   3.41499  0.13239  3.46521  2.81579     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     30   3.07277  2.58506  3.12153  0.18125     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     31   2.93653  3.57178  0.11892  3.47480     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     32   3.23383  0.16151  3.12410  2.72178     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     33   3.41499  0.13239  3.46521  2.81579     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     34   2.93653  3.57178  0.11892  3.47480     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     35   0.14399  3.36455  2.79170  3.26473     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     36   3.07277  2.58506  3.12153  0.18125     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     37   2.93653  3.57178  0.11892  3.47480     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     38   2.93653  3.57178  0.11892  3.47480     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     39   0.16135  3.29923  2.64224  3.19680     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     40   3.07277  2.58506  3.12153  0.18125     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     41   3.41499  0.13239  3.46521  2.81579     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     42   0.14399  3.36455  2.79170  3.26473     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     43   3.07277  2.58506  3.12153  0.18125     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     44   2.92813  2.52850  2.81557  0.21461     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03722  4.00259  4.00259  1.46634  0.26236  1.09861  0.40547
+     45   0.14399  3.36455  2.79170  3.26473     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01878  3.98416        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Rhizaria_1_SSU_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 02:46:01 2012
+NSEQ  9
+EFFN  3.256348
+CKSUM 428889299
+STATS LOCAL MSV       -8.0515  0.71931
+STATS LOCAL VITERBI   -7.6933  0.71931
+STATS LOCAL FORWARD   -4.1243  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33223  1.49217  1.18880  1.57678
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  0.00000        *
+      1   0.14476  3.35879  2.78795  3.25843      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      2   2.93249  3.56592  0.11958  3.46834      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      3   3.06699  2.58138  3.11596  0.18220      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      4   3.40835  0.13320  3.45885  2.81094      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      5   2.93249  3.56592  0.11958  3.46834      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      6   3.06699  2.58138  3.11596  0.18220      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+      7   0.14476  3.35879  2.78795  3.25843      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     41   3.40835  0.13320  3.45885  2.81094     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     42   0.14476  3.35879  2.78795  3.25843     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     43   3.40835  0.13320  3.45885  2.81094     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     44   2.67630  0.40722  2.74549  1.60214     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03734  3.99936  3.99936  1.46634  0.26236  1.09861  0.40547
+     45   2.93249  3.56592  0.11958  3.46834     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01885  3.98087        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Rhizaria_1_SSU_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Jan  7 02:45:51 2012
+NSEQ  7
+EFFN  3.250488
+CKSUM 1479234683
+STATS LOCAL MSV       -7.8550  0.71933
+STATS LOCAL VITERBI   -7.6574  0.71933
+STATS LOCAL FORWARD   -3.9885  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27354  1.45969  1.38387  1.43866
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  0.00000        *
+      1   3.40613  0.13347  3.45673  2.80932      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      2   0.14502  3.35687  2.78670  3.25633      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      3   3.06506  2.58015  3.11411  0.18252      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      4   2.93114  3.56396  0.11980  3.46618      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      5   3.40613  0.13347  3.45673  2.80932      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      6   0.14502  3.35687  2.78670  3.25633      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      7   3.40613  0.13347  3.45673  2.80932      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      8   0.14502  3.35687  2.78670  3.25633      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      9   3.06506  2.58015  3.11411  0.18252      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     10   0.14502  3.35687  2.78670  3.25633     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     11   3.06506  2.58015  3.11411  0.18252     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     12   0.14502  3.35687  2.78670  3.25633     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     13   3.40613  0.13347  3.45673  2.80932     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     14   2.93114  3.56396  0.11980  3.46618     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     15   3.06506  2.58015  3.11411  0.18252     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     16   3.06506  2.58015  3.11411  0.18252     16 - -
+          1.38629  1.38629  1.38629  1.38629
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+     17   3.40613  0.13347  3.45673  2.80932     17 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     21   0.14502  3.35687  2.78670  3.25633     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.12968  3.99829  2.27038  1.46634  0.26236  1.09861  0.40547
+     22   2.81175  3.39405  0.14077  3.27968     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04093  3.90954  3.90954  1.46634  0.26236  0.30403  1.33879
+     23   2.93114  3.56396  0.11980  3.46618     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
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+     25   2.93114  3.56396  0.11980  3.46618     25 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     31   2.93114  3.56396  0.11980  3.46618     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     32   3.40613  0.13347  3.45673  2.80932     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     33   2.93114  3.56396  0.11980  3.46618     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     34   2.93114  3.56396  0.11980  3.46618     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     35   0.14502  3.35687  2.78670  3.25633     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     36   0.14502  3.35687  2.78670  3.25633     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     37   2.93114  3.56396  0.11980  3.46618     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     38   2.93114  3.56396  0.11980  3.46618     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     39   0.14502  3.35687  2.78670  3.25633     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     40   3.06506  2.58015  3.11411  0.18252     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     41   3.40613  0.13347  3.45673  2.80932     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     42   0.14502  3.35687  2.78670  3.25633     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     43   3.06506  2.58015  3.11411  0.18252     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     44   3.06506  2.58015  3.11411  0.18252     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     45   0.14502  3.35687  2.78670  3.25633     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01887  3.97977        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/R.hmm.h3f
Binary file ITSx_db/HMMs/R.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/R.hmm.h3i
Binary file ITSx_db/HMMs/R.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/R.hmm.h3m
Binary file ITSx_db/HMMs/R.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/R.hmm.h3p
Binary file ITSx_db/HMMs/R.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/S.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/S.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,1240 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Synurophyceae_58S_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Jan 19 22:10:37 2012
+NSEQ  114
+EFFN  3.336365
+CKSUM 556246054
+STATS LOCAL MSV       -7.9476  0.71931
+STATS LOCAL VITERBI   -7.6935  0.71931
+STATS LOCAL FORWARD   -4.0189  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82422  1.38641  1.25673  1.19039
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  0.00000        *
+      1   3.43814  0.12961  3.48739  2.83266      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+      2   2.95057  3.59219  0.11668  3.49732      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+      3   3.43814  0.12961  3.48739  2.83266      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+      4   0.14132  3.38463  2.80476  3.28671      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+      5   3.09302  2.59795  3.14101  0.17797      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+      6   3.43814  0.12961  3.48739  2.83266      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+      7   3.09302  2.59795  3.14101  0.17797      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+      8   3.09302  2.59795  3.14101  0.17797      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+      9   2.95057  3.59219  0.11668  3.49732      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     10   3.43814  0.12961  3.48739  2.83266     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     11   0.14132  3.38463  2.80476  3.28671     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     12   3.43814  0.12961  3.48739  2.83266     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     13   3.09302  2.59795  3.14101  0.17797     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     14   2.95057  3.59219  0.11668  3.49732     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     15   3.43814  0.12961  3.48739  2.83266     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     16   3.43814  0.12961  3.48739  2.83266     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     17   3.09302  2.59795  3.14101  0.17797     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     18   2.93904  0.27285  3.00266  1.99347     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     19   2.95057  3.59219  0.11668  3.49732     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     20   2.95057  3.59219  0.11668  3.49732     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     21   3.43814  0.12961  3.48739  2.83266     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     22   0.14132  3.38463  2.80476  3.28671     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     23   2.95057  3.59219  0.11668  3.49732     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     24   3.09302  2.59795  3.14101  0.17797     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     25   0.14132  3.38463  2.80476  3.28671     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     26   3.09302  2.59795  3.14101  0.17797     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     27   2.95057  3.59219  0.11668  3.49732     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     28   3.09302  2.59795  3.14101  0.17797     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     29   3.43814  0.12961  3.48739  2.83266     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     30   3.09302  2.59795  3.14101  0.17797     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     31   2.95057  3.59219  0.11668  3.49732     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     32   3.09302  2.59795  3.14101  0.17797     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     33   3.09302  2.59795  3.14101  0.17797     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     34   2.95057  3.59219  0.11668  3.49732     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     35   2.95057  3.59219  0.11668  3.49732     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     36   0.14132  3.38463  2.80476  3.28671     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     37   2.95057  3.59219  0.11668  3.49732     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     38   3.09302  2.59795  3.14101  0.17797     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     39   2.95057  3.59219  0.11668  3.49732     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     40   3.09302  2.59795  3.14101  0.17797     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     41   3.43814  0.12961  3.48739  2.83266     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     42   3.09302  2.59795  3.14101  0.17797     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     43   2.95057  3.59219  0.11668  3.49732     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     44   3.09302  2.59795  3.14101  0.17797     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01392  4.01392  1.46634  0.26236  1.09861  0.40547
+     45   0.14132  3.38463  2.80476  3.28671     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01857  3.99570        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Synurophyceae_58S_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Jan 19 22:10:46 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 592956816
+STATS LOCAL MSV       -7.3746  0.72844
+STATS LOCAL VITERBI   -8.4013  0.72844
+STATS LOCAL FORWARD   -3.5118  0.72844
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66005  1.44051  1.32058  1.18390
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   0.23862  2.84929  2.43386  2.70756      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Synurophyceae_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 16 13:02:58 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 593723470
+STATS LOCAL MSV       -7.4782  0.72836
+STATS LOCAL VITERBI   -8.3072  0.72836
+STATS LOCAL FORWARD   -3.3799  0.72836
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.65518  1.50641  1.26646  1.18610
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   0.23862  2.84929  2.43386  2.70756     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.53331  3.02441  0.20344  2.88069     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Synurophyceae_58S_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Jan 19 22:02:32 2012
+NSEQ  113
+EFFN  3.251923
+CKSUM 3036684999
+STATS LOCAL MSV       -7.9889  0.71933
+STATS LOCAL VITERBI   -7.7127  0.71933
+STATS LOCAL FORWARD   -4.0648  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22272  1.32448  1.52659  1.50347
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  0.00000        *
+      1   3.06553  2.58045  3.11456  0.18244      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+      2   3.40667  0.13341  3.45725  2.80971      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+      3   0.14496  3.35734  2.78701  3.25684      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+      4   3.40667  0.13341  3.45725  2.80971      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+      5   3.06553  2.58045  3.11456  0.18244      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+      6   3.06553  2.58045  3.11456  0.18244      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+      7   3.06553  2.58045  3.11456  0.18244      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+      8   3.40667  0.13341  3.45725  2.80971      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+      9   0.14496  3.35734  2.78701  3.25684      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     10   2.93147  3.56444  0.11974  3.46671     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     11   3.40667  0.13341  3.45725  2.80971     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     12   0.14496  3.35734  2.78701  3.25684     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     13   0.14496  3.35734  2.78701  3.25684     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     14   3.40667  0.13341  3.45725  2.80971     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     15   2.93147  3.56444  0.11974  3.46671     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     16   2.93147  3.56444  0.11974  3.46671     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     17   0.14496  3.35734  2.78701  3.25684     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     18   3.06553  2.58045  3.11456  0.18244     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     19   2.93147  3.56444  0.11974  3.46671     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     20   3.06553  2.58045  3.11456  0.18244     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     21   3.40667  0.13341  3.45725  2.80971     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     22   3.06553  2.58045  3.11456  0.18244     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     23   0.14496  3.35734  2.78701  3.25684     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     24   2.93147  3.56444  0.11974  3.46671     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     25   2.93147  3.56444  0.11974  3.46671     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     26   3.06553  2.58045  3.11456  0.18244     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     27   3.06553  2.58045  3.11456  0.18244     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     28   3.40667  0.13341  3.45725  2.80971     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     29   3.40667  0.13341  3.45725  2.80971     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     30   3.40667  0.13341  3.45725  2.80971     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     31   0.14496  3.35734  2.78701  3.25684     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     32   3.40667  0.13341  3.45725  2.80971     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     33   0.14496  3.35734  2.78701  3.25684     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     34   0.18088  2.96714  2.70498  3.05460     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     35   3.40667  0.13341  3.45725  2.80971     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     36   2.93147  3.56444  0.11974  3.46671     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     37   0.14496  3.35734  2.78701  3.25684     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     38   3.06553  2.58045  3.11456  0.18244     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     39   2.93147  3.56444  0.11974  3.46671     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     40   0.14496  3.35734  2.78701  3.25684     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     41   0.14496  3.35734  2.78701  3.25684     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     42   2.93147  3.56444  0.11974  3.46671     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     43   0.14496  3.35734  2.78701  3.25684     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     44   0.14496  3.35734  2.78701  3.25684     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03737  3.99855  3.99855  1.46634  0.26236  1.09861  0.40547
+     45   3.40667  0.13341  3.45725  2.80971     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01886  3.98004        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Synurophyceae_58S_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Jan 19 22:02:47 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3548777912
+STATS LOCAL MSV       -7.5764  0.72791
+STATS LOCAL VITERBI   -8.0244  0.72791
+STATS LOCAL FORWARD   -3.4276  0.72791
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.19013  1.34822  1.49687  1.54982
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Synurophyceae_58S_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Jan 19 22:02:39 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3348200563
+STATS LOCAL MSV       -8.0376  0.72066
+STATS LOCAL VITERBI   -7.7807  0.72066
+STATS LOCAL FORWARD   -4.1031  0.72066
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.24048  1.32496  1.50510  1.50083
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   0.15719  3.27118  2.73043  3.16274      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   0.54133  2.56226  1.37841  2.42004     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Synurophyceae_4_LSU_start_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Mon Jan 16 13:05:25 2012
+NSEQ  92
+EFFN  3.383179
+CKSUM 3877202179
+STATS LOCAL MSV       -7.7500  0.71933
+STATS LOCAL VITERBI   -7.6929  0.71933
+STATS LOCAL FORWARD   -3.8573  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16351  1.31430  1.69409  1.44739
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  0.00000        *
+      1   0.13939  3.39944  2.81436  3.30292      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+      2   3.10801  2.60747  3.15542  0.17558      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+      3   3.45519  0.12760  3.50371  2.84505      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+      4   2.96086  3.60718  0.11506  3.51387      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+      5   2.96086  3.60718  0.11506  3.51387      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+      6   0.13939  3.39944  2.81436  3.30292      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+      7   3.45519  0.12760  3.50371  2.84505      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+      8   3.45519  0.12760  3.50371  2.84505      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+      9   3.10801  2.60747  3.15542  0.17558      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     10   3.45519  0.12760  3.50371  2.84505     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     11   3.45519  0.12760  3.50371  2.84505     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     12   0.13939  3.39944  2.81436  3.30292     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     13   0.13939  3.39944  2.81436  3.30292     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     14   3.10801  2.60747  3.15542  0.17558     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     15   3.45519  0.12760  3.50371  2.84505     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     16   0.13939  3.39944  2.81436  3.30292     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     17   2.96086  3.60718  0.11506  3.51387     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     18   2.75765  2.46303  2.45084  0.26767     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     19   3.45519  0.12760  3.50371  2.84505     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     20   0.13939  3.39944  2.81436  3.30292     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     21   0.18638  2.89150  2.70744  3.03986     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     22   2.96086  3.60718  0.11506  3.51387     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     23   0.13939  3.39944  2.81436  3.30292     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     24   2.95237  2.24501  3.00553  0.23276     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     25   2.95237  2.24501  3.00553  0.23276     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     26   0.13939  3.39944  2.81436  3.30292     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     27   3.45519  0.12760  3.50371  2.84505     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     28   3.45519  0.12760  3.50371  2.84505     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     29   3.45519  0.12760  3.50371  2.84505     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     30   2.96086  3.60718  0.11506  3.51387     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     31   3.45519  0.12760  3.50371  2.84505     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     32   3.10801  2.60747  3.15542  0.17558     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     33   2.96086  3.60718  0.11506  3.51387     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     34   0.13939  3.39944  2.81436  3.30292     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     35   0.13939  3.39944  2.81436  3.30292     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     36   3.10801  2.60747  3.15542  0.17558     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     37   3.10801  2.60747  3.15542  0.17558     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     38   3.10801  2.60747  3.15542  0.17558     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     39   0.13939  3.39944  2.81436  3.30292     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     40   0.13939  3.39944  2.81436  3.30292     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     41   2.96086  3.60718  0.11506  3.51387     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     42   3.45519  0.12760  3.50371  2.84505     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     43   0.13939  3.39944  2.81436  3.30292     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     44   3.10801  2.60747  3.15542  0.17558     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02234  4.02234  1.46634  0.26236  1.09861  0.40547
+     45   0.13939  3.39944  2.81436  3.30292     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01841  4.00427        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Synurophyceae_1_SSU_end_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Oct  8 22:49:10 2011
+NSEQ  97
+EFFN  3.229584
+CKSUM 3925539151
+STATS LOCAL MSV       -8.0048  0.71932
+STATS LOCAL VITERBI   -7.6817  0.71932
+STATS LOCAL FORWARD   -4.1102  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27187  1.62651  1.24657  1.44566
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  0.00000        *
+      1   0.14596  3.34999  2.78222  3.24880      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+      2   2.92629  3.55695  0.12059  3.45844      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+      3   3.05815  2.57575  3.10747  0.18366      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+      4   3.39819  0.13445  3.44912  2.80351      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+      5   2.92629  3.55695  0.12059  3.45844      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+      6   3.05815  2.57575  3.10747  0.18366      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+      7   0.14596  3.34999  2.78222  3.24880      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+      8   0.14596  3.34999  2.78222  3.24880      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+      9   3.39819  0.13445  3.44912  2.80351      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     10   0.14596  3.34999  2.78222  3.24880     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     11   0.14596  3.34999  2.78222  3.24880     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     12   2.92629  3.55695  0.12059  3.45844     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     13   2.92629  3.55695  0.12059  3.45844     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     14   3.05815  2.57575  3.10747  0.18366     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     15   3.05815  2.57575  3.10747  0.18366     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     16   3.05815  2.57575  3.10747  0.18366     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     17   3.39819  0.13445  3.44912  2.80351     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     18   3.39819  0.13445  3.44912  2.80351     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     19   2.92629  3.55695  0.12059  3.45844     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     20   3.05815  2.57575  3.10747  0.18366     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     21   0.14596  3.34999  2.78222  3.24880     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     22   2.92629  3.55695  0.12059  3.45844     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     23   2.92629  3.55695  0.12059  3.45844     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     24   3.05815  2.57575  3.10747  0.18366     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     25   2.92629  3.55695  0.12059  3.45844     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     26   0.14596  3.34999  2.78222  3.24880     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     27   0.14596  3.34999  2.78222  3.24880     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     28   3.39819  0.13445  3.44912  2.80351     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     29   3.39819  0.13445  3.44912  2.80351     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     30   3.05815  2.57575  3.10747  0.18366     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     31   2.92629  3.55695  0.12059  3.45844     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     32   3.39819  0.13445  3.44912  2.80351     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     33   2.92629  3.55695  0.12059  3.45844     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     34   2.92629  3.55695  0.12059  3.45844     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     35   0.14596  3.34999  2.78222  3.24880     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     36   0.14596  3.34999  2.78222  3.24880     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     37   2.92629  3.55695  0.12059  3.45844     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     38   2.92629  3.55695  0.12059  3.45844     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     39   0.14596  3.34999  2.78222  3.24880     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     40   3.05815  2.57575  3.10747  0.18366     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     41   3.39819  0.13445  3.44912  2.80351     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     42   0.14596  3.34999  2.78222  3.24880     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     43   3.05815  2.57575  3.10747  0.18366     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     44   3.05815  2.57575  3.10747  0.18366     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99445  3.99445  1.46634  0.26236  1.09861  0.40547
+     45   0.14596  3.34999  2.78222  3.24880     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01894  3.97586        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/S.hmm.h3f
Binary file ITSx_db/HMMs/S.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/S.hmm.h3i
Binary file ITSx_db/HMMs/S.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/S.hmm.h3m
Binary file ITSx_db/HMMs/S.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/S.hmm.h3p
Binary file ITSx_db/HMMs/S.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/T.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/T.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,34720 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:57:06 2012
+NSEQ  662
+EFFN  4.649132
+CKSUM 878970887
+STATS LOCAL MSV       -6.9557  0.71932
+STATS LOCAL VITERBI   -7.5350  0.71932
+STATS LOCAL FORWARD   -3.7755  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.86570  1.07040  1.08935  1.79633
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  0.00000        *
+      1   3.17620  3.92530  0.08600  3.86688      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+      2   3.82361  0.09186  3.85519  3.10671      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+      3   3.82361  0.09186  3.85519  3.10671      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+      4   3.57901  0.14044  3.62229  2.57183      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+      5   1.93587  1.39029  0.83718  1.75004      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+      6   0.10359  3.72520  3.02434  3.66086      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+      7   0.19844  3.34834  2.27973  3.15742      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+      8   3.17620  3.92530  0.08600  3.86688      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+      9   3.82361  0.09186  3.85519  3.10671      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     10   3.77465  0.10089  3.80859  2.97902     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     11   0.84316  2.18097  1.68775  1.30274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     12   3.24031  2.25577  3.28501  0.20014     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     13   2.81050  1.42383  2.87304  0.44238     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     14   1.22032  1.28525  1.91165  1.27137     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     15   3.17620  3.92530  0.08600  3.86688     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     16   3.17620  3.92530  0.08600  3.86688     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     17   3.55653  0.14545  3.60081  2.53166     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     18   3.35052  0.19783  3.40305  2.19688     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     19   2.73063  3.76185  0.12042  3.68745     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     20   0.10359  3.72520  3.02434  3.66086     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     21   2.82567  3.80301  0.11149  3.73280     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     22   3.17620  3.92530  0.08600  3.86688     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     23   3.17620  3.92530  0.08600  3.86688     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     24   3.82361  0.09186  3.85519  3.10671     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     25   0.10359  3.72520  3.02434  3.66086     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     26   3.76501  0.10270  3.79943  2.95555     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     27   3.06878  3.83900  0.09883  3.64534     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     28   2.75612  1.31587  2.82056  0.49651     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     29   3.70999  0.11326  3.74712  2.82995     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     30   3.45156  2.82621  3.48548  0.12962     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     31   3.17620  3.92530  0.08600  3.86688     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     32   3.82361  0.09186  3.85519  3.10671     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     33   3.82361  0.09186  3.85519  3.10671     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     34   3.45156  2.82621  3.48548  0.12962     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     35   3.17620  3.92530  0.08600  3.86688     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     36   3.14070  3.84248  0.09662  3.59684     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     37   3.17620  3.92530  0.08600  3.86688     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     38   2.65366  0.70233  2.72331  0.99826     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     39   3.17620  3.92530  0.08600  3.86688     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     40   3.45156  2.82621  3.48548  0.12962     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     41   3.77814  0.10024  3.81192  2.98765     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     42   0.12107  3.61002  2.98028  3.31865     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     43   3.76361  0.10296  3.79809  2.95218     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     44   2.62684  3.71265  0.13142  3.63335     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02964  4.22671  4.22671  1.46634  0.26236  1.09861  0.40547
+     45   3.21513  0.24087  3.27225  1.99521     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01493  4.21200        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_eighteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:01:50 2012
+NSEQ  32
+EFFN  3.222656
+CKSUM 2873994334
+STATS LOCAL MSV       -8.1370  0.71932
+STATS LOCAL VITERBI   -7.7175  0.71932
+STATS LOCAL FORWARD   -3.4978  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72186  1.05600  1.08934  1.98789
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  0.00000        *
+      1   2.92467  3.55461  0.12085  3.45586      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      2   3.39555  0.13478  3.44658  2.80157      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      3   3.39555  0.13478  3.44658  2.80157      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      4   3.39555  0.13478  3.44658  2.80157      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      5   2.92467  3.55461  0.12085  3.45586      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      6   0.14627  3.34770  2.78072  3.24630      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      7   2.92467  3.55461  0.12085  3.45586      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      8   2.92467  3.55461  0.12085  3.45586      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+      9   3.39555  0.13478  3.44658  2.80157      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     10   3.39555  0.13478  3.44658  2.80157     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     11   0.14627  3.34770  2.78072  3.24630     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     12   3.39555  0.13478  3.44658  2.80157     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     13   3.05586  2.57429  3.10526  0.18405     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     14   0.14627  3.34770  2.78072  3.24630     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     15   2.92467  3.55461  0.12085  3.45586     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     16   2.92467  3.55461  0.12085  3.45586     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     17   3.02608  0.23379  3.08751  2.16846     17 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     19   2.92467  3.55461  0.12085  3.45586     19 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     25   0.14627  3.34770  2.78072  3.24630     25 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     27   2.92467  3.55461  0.12085  3.45586     27 - -
+          1.38629  1.38629  1.38629  1.38629
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+     28   2.92668  0.27091  2.99060  2.01381     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     29   3.39555  0.13478  3.44658  2.80157     29 - -
+          1.38629  1.38629  1.38629  1.38629
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+     30   3.05586  2.57429  3.10526  0.18405     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     31   2.92467  3.55461  0.12085  3.45586     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     33   3.39555  0.13478  3.44658  2.80157     33 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     35   2.92467  3.55461  0.12085  3.45586     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     36   2.92467  3.55461  0.12085  3.45586     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     37   2.92467  3.55461  0.12085  3.45586     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     39   2.92467  3.55461  0.12085  3.45586     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     40   3.05586  2.57429  3.10526  0.18405     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     41   3.39555  0.13478  3.44658  2.80157     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     42   0.14627  3.34770  2.78072  3.24630     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     43   3.39555  0.13478  3.44658  2.80157     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     44   0.14627  3.34770  2.78072  3.24630     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
+     45   3.39555  0.13478  3.44658  2.80157     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01897  3.97456        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_eleven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:57:45 2012
+NSEQ  17
+EFFN  3.141846
+CKSUM 144042220
+STATS LOCAL MSV       -8.0334  0.71931
+STATS LOCAL VITERBI   -7.6576  0.71931
+STATS LOCAL FORWARD   -3.7404  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93155  1.06659  1.09552  1.73426
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  0.00000        *
+      1   2.90543  3.52685  0.12405  3.42529      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+      2   3.36422  0.13874  3.41654  2.77857      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+      3   3.36422  0.13874  3.41654  2.77857      3 - -
+          1.38629  1.38629  1.38629  1.38629
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+      4   3.36422  0.13874  3.41654  2.77857      4 - -
+          1.38629  1.38629  1.38629  1.38629
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+      5   2.90543  3.52685  0.12405  3.42529      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+      6   0.15004  3.32058  2.76298  3.21666      6 - -
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+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+      7   3.36422  0.13874  3.41654  2.77857      7 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+      9   3.36422  0.13874  3.41654  2.77857      9 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     11   0.15004  3.32058  2.76298  3.21666     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+     13   3.02876  2.55699  3.07919  0.18863     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+     14   3.36422  0.13874  3.41654  2.77857     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+     15   2.90543  3.52685  0.12405  3.42529     15 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     25   0.15004  3.32058  2.76298  3.21666     25 - -
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+     33   3.36422  0.13874  3.41654  2.77857     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+     34   3.02876  2.55699  3.07919  0.18863     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+     35   2.90543  3.52685  0.12405  3.42529     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+     36   2.90543  3.52685  0.12405  3.42529     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+     37   2.90543  3.52685  0.12405  3.42529     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+     38   3.02876  2.55699  3.07919  0.18863     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+     39   2.90543  3.52685  0.12405  3.42529     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+     40   3.02876  2.55699  3.07919  0.18863     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+     41   3.36422  0.13874  3.41654  2.77857     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+     42   0.15004  3.32058  2.76298  3.21666     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+     43   3.36422  0.13874  3.41654  2.77857     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+     44   2.90543  3.52685  0.12405  3.42529     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03816  3.97816  3.97816  1.46634  0.26236  1.09861  0.40547
+     45   3.36422  0.13874  3.41654  2.77857     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01926  3.95926        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fifteena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:59:06 2012
+NSEQ  8
+EFFN  3.105469
+CKSUM 803603558
+STATS LOCAL MSV       -8.1846  0.71931
+STATS LOCAL VITERBI   -7.7807  0.71931
+STATS LOCAL FORWARD   -4.0577  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55243  1.21735  1.14333  1.75159
+          1.38629  1.38629  1.38629  1.38629
+          0.03843  3.97132  3.97132  1.46634  0.26236  0.00000        *
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+     44   0.15180  3.30814  2.75481  3.20307     44 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   3.34983  0.14060  3.40273  2.76795     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01940  3.95229        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fifteenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:59:15 2012
+NSEQ  5
+EFFN  3.393555
+CKSUM 3509542651
+STATS LOCAL MSV       -7.3147  0.71933
+STATS LOCAL VITERBI   -7.6680  0.71933
+STATS LOCAL FORWARD   -3.7818  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81544  1.21795  1.12415  1.53030
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  0.00000        *
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+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     43   3.11130  2.60957  3.15859  0.17506     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     44   2.96311  3.61046  0.11471  3.51750     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
+     45   3.11130  2.60957  3.15859  0.17506     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01837  4.00616        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fifteenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:59:22 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 101589114
+STATS LOCAL MSV       -8.1735  0.71999
+STATS LOCAL VITERBI   -7.8984  0.71999
+STATS LOCAL FORWARD   -4.0579  0.71999
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81067  1.32828  1.09424  1.44083
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.97980  2.52563  3.03204  0.19727     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   0.15719  3.27118  2.73043  3.16274     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.97980  2.52563  3.03204  0.19727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.86982  3.47591  0.13017  3.36931     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fifteend_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:59:30 2012
+NSEQ  131
+EFFN  4.801361
+CKSUM 1080313258
+STATS LOCAL MSV       -6.9593  0.71932
+STATS LOCAL VITERBI   -7.6174  0.71932
+STATS LOCAL FORWARD   -3.7137  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.79265  1.06993  1.10887  1.82936
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  0.00000        *
+      1   3.19616  3.95461  0.08375  3.89943      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+      2   3.85798  0.08914  3.88792  3.13085      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+      3   3.85798  0.08914  3.88792  3.13085      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+      4   3.85798  0.08914  3.88792  3.13085      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+      5   2.74199  3.28778  0.19714  2.56201      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+      6   0.10072  3.75644  3.04476  3.69519      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+      7   0.47413  2.89412  1.35031  2.76357      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+      8   3.14065  3.82544  0.10063  3.48448      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+      9   3.85798  0.08914  3.88792  3.13085      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     10   3.79514  0.10078  3.82825  2.96338     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     11   0.27431  2.43337  2.65241  2.50495     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     12   2.81648  1.37717  2.87932  0.45931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     13   3.15429  2.00469  3.20368  0.24588     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     14   0.87326  1.37662  1.80543  1.79832     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     15   2.40378  2.35707  0.44543  1.74652     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     16   3.19616  3.95461  0.08375  3.89943     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     17   2.44960  0.55950  2.17179  1.47750     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     18   3.30475  0.21818  3.35916  2.08307     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     19   2.98239  2.83730  0.15414  3.39352     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     20   0.11390  3.70419  2.86929  3.63828     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     21   3.19616  3.95461  0.08375  3.89943     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     22   3.19616  3.95461  0.08375  3.89943     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     23   3.14010  3.52927  0.10104  3.75100     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     24   3.85798  0.08914  3.88792  3.13085     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     25   0.10072  3.75644  3.04476  3.69519     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     26   3.85798  0.08914  3.88792  3.13085     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     27   3.19616  3.95461  0.08375  3.89943     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     28   3.21562  2.13217  3.26215  0.21942     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     29   3.79551  0.10072  3.82859  2.96428     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     30   3.43944  2.69865  3.47444  0.13967     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     31   3.19616  3.95461  0.08375  3.89943     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     32   3.57082  0.14704  3.61478  2.50490     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     33   3.85798  0.08914  3.88792  3.13085     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     34   3.48600  2.84848  3.51857  0.12579     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     35   3.19616  3.95461  0.08375  3.89943     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     36   3.19616  3.95461  0.08375  3.89943     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     37   3.19616  3.95461  0.08375  3.89943     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     38   3.19029  0.13908  3.56005  2.80930     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     39   3.19616  3.95461  0.08375  3.89943     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     40   3.48600  2.84848  3.51857  0.12579     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     41   3.85798  0.08914  3.88792  3.13085     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     42   0.10072  3.75644  3.04476  3.69519     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     43   3.03155  0.13827  3.54533  2.95589     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     44   0.81984  2.48847  1.01425  2.17341     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02898  4.24869  4.24869  1.46634  0.26236  1.09861  0.40547
+     45   3.72146  0.11504  3.75830  2.79450     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01460  4.23430        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fivea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:56:13 2012
+NSEQ  4
+EFFN  3.261719
+CKSUM 831295311
+STATS LOCAL MSV       -8.3184  0.71932
+STATS LOCAL VITERBI   -7.8263  0.71932
+STATS LOCAL FORWARD   -3.4947  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92683  1.06762  1.03950  1.85194
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  0.00000        *
+      1   2.93372  3.56771  0.11938  3.47031      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      2   3.41037  0.13295  3.46079  2.81242      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      3   3.41037  0.13295  3.46079  2.81242      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      4   3.41037  0.13295  3.46079  2.81242      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      5   2.93372  3.56771  0.11938  3.47031      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      6   0.14453  3.36055  2.78910  3.26035      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      7   0.14453  3.36055  2.78910  3.26035      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      8   2.93372  3.56771  0.11938  3.47031      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      9   3.41037  0.13295  3.46079  2.81242      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     10   3.41037  0.13295  3.46079  2.81242     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     11   3.06875  2.58250  3.11766  0.18191     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     12   3.06875  2.58250  3.11766  0.18191     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     13   3.41037  0.13295  3.46079  2.81242     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     14   2.93372  3.56771  0.11938  3.47031     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     15   2.93372  3.56771  0.11938  3.47031     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     16   2.93372  3.56771  0.11938  3.47031     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     17   2.39444  0.95945  2.46670  0.81914     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     18   2.39444  0.95945  2.46670  0.81914     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     19   2.93372  3.56771  0.11938  3.47031     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     20   0.14453  3.36055  2.78910  3.26035     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     21   2.93372  3.56771  0.11938  3.47031     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     22   2.93372  3.56771  0.11938  3.47031     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     23   2.93372  3.56771  0.11938  3.47031     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     24   3.41037  0.13295  3.46079  2.81242     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     25   0.14453  3.36055  2.78910  3.26035     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     26   3.41037  0.13295  3.46079  2.81242     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     27   2.93372  3.56771  0.11938  3.47031     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     28   3.41037  0.13295  3.46079  2.81242     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     29   3.41037  0.13295  3.46079  2.81242     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     30   3.06875  2.58250  3.11766  0.18191     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     31   2.93372  3.56771  0.11938  3.47031     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     32   3.41037  0.13295  3.46079  2.81242     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     33   3.41037  0.13295  3.46079  2.81242     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     34   3.06875  2.58250  3.11766  0.18191     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     35   2.93372  3.56771  0.11938  3.47031     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     36   2.93372  3.56771  0.11938  3.47031     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     37   2.93372  3.56771  0.11938  3.47031     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     38   3.41037  0.13295  3.46079  2.81242     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     39   2.93372  3.56771  0.11938  3.47031     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     40   3.06875  2.58250  3.11766  0.18191     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     41   3.41037  0.13295  3.46079  2.81242     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     42   0.14453  3.36055  2.78910  3.26035     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     43   3.41037  0.13295  3.46079  2.81242     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     44   2.93372  3.56771  0.11938  3.47031     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     45   3.41037  0.13295  3.46079  2.81242     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01883  3.98187        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fiveb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:56:22 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2338491015
+STATS LOCAL MSV       -8.2394  0.72008
+STATS LOCAL VITERBI   -7.8111  0.72008
+STATS LOCAL FORWARD   -3.6939  0.72008
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.69406  1.11036  1.08253  1.91020
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   1.22293  1.99551  1.27815  1.23396     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   0.15719  3.27118  2.73043  3.16274     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.86982  3.47591  0.13017  3.36931     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fortya_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:12:04 2012
+NSEQ  18
+EFFN  3.783691
+CKSUM 1791042696
+STATS LOCAL MSV       -6.8741  0.71932
+STATS LOCAL VITERBI   -7.8612  0.71932
+STATS LOCAL FORWARD   -3.9250  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.00396  1.23406  1.19203  1.30753
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  0.00000        *
+      1   3.04077  3.72472  0.10321  3.64403      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+      2   3.58999  0.11296  3.63254  2.94190      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+      3   3.04077  3.72472  0.10321  3.64403      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+      4   3.58999  0.11296  3.63254  2.94190      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+      5   3.58999  0.11296  3.63254  2.94190      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+      6   3.58999  0.11296  3.63254  2.94190      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+      7   3.11499  0.23213  3.17409  2.11243      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+      8   2.61323  1.38493  2.67966  0.49795      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+      9   3.22897  2.68419  3.27168  0.15761      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     10   3.04077  3.72472  0.10321  3.64403     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     11   3.04077  3.72472  0.10321  3.64403     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     12   3.22897  2.68419  3.27168  0.15761     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     13   0.12508  3.51713  2.89021  3.43205     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     14   3.22897  2.68419  3.27168  0.15761     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     15   3.22897  2.68419  3.27168  0.15761     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     16   3.58999  0.11296  3.63254  2.94190     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     17   3.58999  0.11296  3.63254  2.94190     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     18   1.82319  3.02529  0.30812  2.89828     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     19   1.28550  2.07537  1.18600  1.22916     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     20   2.25442  3.31379  0.20081  3.20344     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     21   3.04077  3.72472  0.10321  3.64403     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     22   3.04077  3.72472  0.10321  3.64403     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     23   3.04077  3.72472  0.10321  3.64403     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     24   3.58999  0.11296  3.63254  2.94190     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     25   0.12508  3.51713  2.89021  3.43205     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     26   3.22897  2.68419  3.27168  0.15761     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     27   3.04077  3.72472  0.10321  3.64403     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     28   3.58999  0.11296  3.63254  2.94190     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     29   3.58999  0.11296  3.63254  2.94190     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     30   3.22897  2.68419  3.27168  0.15761     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     31   3.04077  3.72472  0.10321  3.64403     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     32   3.22897  2.68419  3.27168  0.15761     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     33   3.22897  2.68419  3.27168  0.15761     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     34   3.58999  0.11296  3.63254  2.94190     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     35   3.04077  3.72472  0.10321  3.64403     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     36   0.12508  3.51713  2.89021  3.43205     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     37   3.04077  3.72472  0.10321  3.64403     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     38   3.58999  0.11296  3.63254  2.94190     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     39   3.04077  3.72472  0.10321  3.64403     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     40   3.22897  2.68419  3.27168  0.15761     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     41   3.58999  0.11296  3.63254  2.94190     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     42   0.12508  3.51713  2.89021  3.43205     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     43   3.22897  2.68419  3.27168  0.15761     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     44   3.22897  2.68419  3.27168  0.15761     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     45   1.83918  2.36226  2.57124  0.39987     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01714  4.07477        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fortyb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:12:10 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 32026895
+STATS LOCAL MSV       -7.5235  0.72779
+STATS LOCAL VITERBI   -8.3648  0.72779
+STATS LOCAL FORWARD   -3.5398  0.72779
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.83079  1.23420  1.21908  1.37379
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.81865  0.23582  2.88868  2.35662     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fortyc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:12:17 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2184984864
+STATS LOCAL MSV       -7.4094  0.72832
+STATS LOCAL VITERBI   -8.3948  0.72832
+STATS LOCAL FORWARD   -3.4932  0.72832
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66233  1.38558  1.31979  1.22781
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fortyonea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:12:27 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2924481573
+STATS LOCAL MSV       -7.4101  0.72843
+STATS LOCAL VITERBI   -8.3691  0.72843
+STATS LOCAL FORWARD   -3.6455  0.72843
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74074  1.38343  1.32314  1.17898
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fortyoneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:12:38 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3468270774
+STATS LOCAL MSV       -7.4190  0.72801
+STATS LOCAL VITERBI   -8.4353  0.72801
+STATS LOCAL FORWARD   -3.5007  0.72801
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92183  1.28078  1.22118  1.26956
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fortyonec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:12:47 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2958063581
+STATS LOCAL MSV       -7.5700  0.72787
+STATS LOCAL VITERBI   -8.2073  0.72787
+STATS LOCAL FORWARD   -3.5550  0.72787
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74595  1.23508  1.27185  1.36886
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.81865  0.23582  2.88868  2.35662     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fortyoned_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:12:59 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2944176339
+STATS LOCAL MSV       -8.0356  0.72024
+STATS LOCAL VITERBI   -7.9811  0.72024
+STATS LOCAL FORWARD   -3.7877  0.72024
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.03661  1.31928  1.14956  1.25377
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.86982  3.47591  0.13017  3.36931     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.97980  2.52563  3.03204  0.19727     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   3.30705  0.14631  3.36166  2.73626     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.97980  2.52563  3.03204  0.19727     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   3.30705  0.14631  3.36166  2.73626     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fortythreea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:13:31 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 545963122
+STATS LOCAL MSV       -8.1058  0.72013
+STATS LOCAL VITERBI   -7.7231  0.72013
+STATS LOCAL FORWARD   -3.7699  0.72013
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63845  1.05232  1.46071  1.49377
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
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+          1.38629  1.38629  1.38629  1.38629
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+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fortythreec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:13:42 2012
+NSEQ  4
+EFFN  3.152344
+CKSUM 2383999962
+STATS LOCAL MSV       -7.9404  0.71933
+STATS LOCAL VITERBI   -7.6097  0.71933
+STATS LOCAL FORWARD   -3.9794  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92616  1.32798  1.04338  1.43961
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  0.00000        *
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+     42   3.03232  2.55926  3.08260  0.18802     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     43   0.14954  3.32415  2.76532  3.22056     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     44   0.14954  3.32415  2.76532  3.22056     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     45   3.03232  2.55926  3.08260  0.18802     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01922  3.96126        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fortythreed_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:13:51 2012
+NSEQ  4
+EFFN  3.128906
+CKSUM 3164554758
+STATS LOCAL MSV       -8.3104  0.71931
+STATS LOCAL VITERBI   -7.6805  0.71931
+STATS LOCAL FORWARD   -3.6350  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.06183  1.00496  1.20814  1.57038
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  0.00000        *
+      1   3.02437  2.55419  3.07496  0.18939      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      2   2.90228  3.52232  0.12458  3.42031      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      3   3.35912  0.13939  3.41165  2.77481      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      4   2.90228  3.52232  0.12458  3.42031      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      5   3.35912  0.13939  3.41165  2.77481      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      6   3.35912  0.13939  3.41165  2.77481      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      7   3.35912  0.13939  3.41165  2.77481      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      8   2.90228  3.52232  0.12458  3.42031      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+      9   3.35912  0.13939  3.41165  2.77481      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     10   2.90228  3.52232  0.12458  3.42031     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     11   2.90228  3.52232  0.12458  3.42031     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     12   3.35912  0.13939  3.41165  2.77481     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     13   3.02437  2.55419  3.07496  0.18939     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     14   3.02437  2.55419  3.07496  0.18939     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     15   2.90228  3.52232  0.12458  3.42031     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     16   3.02437  2.55419  3.07496  0.18939     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     17   3.35912  0.13939  3.41165  2.77481     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     18   3.35912  0.13939  3.41165  2.77481     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     19   0.15066  3.31617  2.76009  3.21184     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     20   0.15066  3.31617  2.76009  3.21184     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     21   2.90228  3.52232  0.12458  3.42031     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     22   2.90228  3.52232  0.12458  3.42031     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     23   2.90228  3.52232  0.12458  3.42031     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     24   3.35912  0.13939  3.41165  2.77481     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     25   0.15066  3.31617  2.76009  3.21184     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     26   3.02437  2.55419  3.07496  0.18939     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     27   2.90228  3.52232  0.12458  3.42031     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     28   3.35912  0.13939  3.41165  2.77481     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     29   3.35912  0.13939  3.41165  2.77481     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     30   3.02437  2.55419  3.07496  0.18939     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     31   3.02437  2.55419  3.07496  0.18939     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     32   3.35912  0.13939  3.41165  2.77481     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     33   3.35912  0.13939  3.41165  2.77481     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     34   3.02437  2.55419  3.07496  0.18939     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     35   2.90228  3.52232  0.12458  3.42031     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     36   0.15066  3.31617  2.76009  3.21184     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     37   2.90228  3.52232  0.12458  3.42031     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     38   3.35912  0.13939  3.41165  2.77481     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     39   2.90228  3.52232  0.12458  3.42031     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     40   3.02437  2.55419  3.07496  0.18939     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     41   3.35912  0.13939  3.41165  2.77481     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     42   3.35912  0.13939  3.41165  2.77481     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     43   3.35912  0.13939  3.41165  2.77481     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     44   3.35912  0.13939  3.41165  2.77481     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
+     45   2.90228  3.52232  0.12458  3.42031     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01931  3.95679        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fortythreee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:14:00 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4293616081
+STATS LOCAL MSV       -7.4799  0.72798
+STATS LOCAL VITERBI   -8.1984  0.72798
+STATS LOCAL FORWARD   -3.3468  0.72798
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.83129  1.23142  1.27214  1.31795
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.57915  2.25909  2.64442  0.28946     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fortythreef_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:14:09 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 763339787
+STATS LOCAL MSV       -7.5094  0.72740
+STATS LOCAL VITERBI   -8.2548  0.72740
+STATS LOCAL FORWARD   -2.9788  0.72740
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.84146  1.01995  1.27767  1.59892
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.57915  2.25909  2.64442  0.28946     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fortythreeg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:14:18 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 908133251
+STATS LOCAL MSV       -7.6472  0.72756
+STATS LOCAL VITERBI   -8.1033  0.72756
+STATS LOCAL FORWARD   -2.9704  0.72756
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.67672  1.01892  1.38834  1.59682
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.57915  2.25909  2.64442  0.28946     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.81865  0.23582  2.88868  2.35662     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fortytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:13:18 2012
+NSEQ  4
+EFFN  3.246094
+CKSUM 3050631641
+STATS LOCAL MSV       -7.9920  0.71931
+STATS LOCAL VITERBI   -7.7116  0.71931
+STATS LOCAL FORWARD   -3.9001  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54804  1.53365  1.19335  1.31533
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  0.00000        *
+      1   2.93012  3.56249  0.11996  3.46456      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      2   3.40447  0.13368  3.45513  2.80810      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      3   0.14522  3.35543  2.78576  3.25475      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      4   3.40447  0.13368  3.45513  2.80810      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      5   3.06361  2.57923  3.11272  0.18276      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      6   3.06361  2.57923  3.11272  0.18276      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      7   3.40447  0.13368  3.45513  2.80810      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      8   3.06361  2.57923  3.11272  0.18276      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+      9   3.06361  2.57923  3.11272  0.18276      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     10   2.93012  3.56249  0.11996  3.46456     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     11   2.93012  3.56249  0.11996  3.46456     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     12   3.06361  2.57923  3.11272  0.18276     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     13   0.14522  3.35543  2.78576  3.25475     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     14   3.06361  2.57923  3.11272  0.18276     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     15   3.06361  2.57923  3.11272  0.18276     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     16   3.40447  0.13368  3.45513  2.80810     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     17   3.40447  0.13368  3.45513  2.80810     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     18   2.93012  3.56249  0.11996  3.46456     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     19   0.14522  3.35543  2.78576  3.25475     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     20   2.93012  3.56249  0.11996  3.46456     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     21   2.93012  3.56249  0.11996  3.46456     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     22   0.14522  3.35543  2.78576  3.25475     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     23   2.93012  3.56249  0.11996  3.46456     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     24   3.06361  2.57923  3.11272  0.18276     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     25   0.14522  3.35543  2.78576  3.25475     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     26   3.40447  0.13368  3.45513  2.80810     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     27   0.14522  3.35543  2.78576  3.25475     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     28   3.40447  0.13368  3.45513  2.80810     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     29   0.14522  3.35543  2.78576  3.25475     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     30   3.06361  2.57923  3.11272  0.18276     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     31   2.93012  3.56249  0.11996  3.46456     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     32   3.40447  0.13368  3.45513  2.80810     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     33   3.06361  2.57923  3.11272  0.18276     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     34   3.06361  2.57923  3.11272  0.18276     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     35   2.93012  3.56249  0.11996  3.46456     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     36   0.14522  3.35543  2.78576  3.25475     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     37   2.93012  3.56249  0.11996  3.46456     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     38   2.93012  3.56249  0.11996  3.46456     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     39   2.93012  3.56249  0.11996  3.46456     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     40   3.06361  2.57923  3.11272  0.18276     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     41   3.40447  0.13368  3.45513  2.80810     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     42   0.14522  3.35543  2.78576  3.25475     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     43   2.93012  3.56249  0.11996  3.46456     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     44   3.06361  2.57923  3.11272  0.18276     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
+     45   2.93012  3.56249  0.11996  3.46456     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97895        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_foura_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:55:55 2012
+NSEQ  84
+EFFN  3.847778
+CKSUM 4048195829
+STATS LOCAL MSV       -7.0232  0.71933
+STATS LOCAL VITERBI   -7.5679  0.71933
+STATS LOCAL FORWARD   -3.6342  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.83579  1.09209  1.08959  1.77996
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  0.00000        *
+      1   3.05237  3.74189  0.10160  3.66308      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+      2   3.60983  0.11097  3.65148  2.95601      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+      3   3.60983  0.11097  3.65148  2.95601      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+      4   3.60983  0.11097  3.65148  2.95601      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+      5   0.65354  2.63334  1.12312  2.49258      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+      6   0.12310  3.53457  2.90140  3.45121      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+      7   0.14875  3.43421  2.64957  3.34423      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+      8   0.99864  2.61882  0.74515  2.47612      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+      9   3.60983  0.11097  3.65148  2.95601      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     10   3.52435  0.12777  3.56920  2.77588     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     11   2.92049  1.95573  2.97625  0.28283     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     12   3.16088  2.47148  3.20649  0.18314     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     13   3.60983  0.11097  3.65148  2.95601     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     14   2.88034  3.67195  0.11561  3.58856     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     15   3.05237  3.74189  0.10160  3.66308     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     16   3.05237  3.74189  0.10160  3.66308     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     17   2.49739  0.93875  2.56828  0.79870     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     18   3.52522  0.12759  3.57003  2.77761     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     19   2.73085  3.60227  0.13036  3.51344     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     20   0.12310  3.53457  2.90140  3.45121     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     21   3.05237  3.74189  0.10160  3.66308     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     22   3.05237  3.74189  0.10160  3.66308     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     23   3.05237  3.74189  0.10160  3.66308     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     24   3.60983  0.11097  3.65148  2.95601     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     25   0.12310  3.53457  2.90140  3.45121     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     26   3.60983  0.11097  3.65148  2.95601     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     27   3.05237  3.74189  0.10160  3.66308     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     28   2.72644  1.58672  2.78931  0.40274     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     29   3.60983  0.11097  3.65148  2.95601     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     30   3.24719  2.69574  3.28917  0.15509     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     31   3.05237  3.74189  0.10160  3.66308     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     32   3.60983  0.11097  3.65148  2.95601     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     33   3.60983  0.11097  3.65148  2.95601     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     34   3.24719  2.69574  3.28917  0.15509     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     35   3.05237  3.74189  0.10160  3.66308     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     36   3.05237  3.74189  0.10160  3.66308     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     37   3.05237  3.74189  0.10160  3.66308     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     38   2.52147  1.09588  2.59121  0.67239     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     39   3.05237  3.74189  0.10160  3.66308     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     40   3.24719  2.69574  3.28917  0.15509     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     41   3.60983  0.11097  3.65148  2.95601     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     42   0.12310  3.53457  2.90140  3.45121     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     43   3.60983  0.11097  3.65148  2.95601     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     44   3.05237  3.74189  0.10160  3.66308     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03363  4.10228  4.10228  1.46634  0.26236  1.09861  0.40547
+     45   3.40214  0.15437  3.45168  2.55037     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01696  4.08560        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fourb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:56:01 2012
+NSEQ  72
+EFFN  3.353027
+CKSUM 2221390108
+STATS LOCAL MSV       -8.2307  0.71933
+STATS LOCAL VITERBI   -7.6868  0.71933
+STATS LOCAL FORWARD   -3.6608  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.84517  1.20286  1.08278  1.59447
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  0.00000        *
+      1   2.95426  3.59755  0.11609  3.50324      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+      2   3.44424  0.12889  3.49323  2.83710      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+      3   3.44424  0.12889  3.49323  2.83710      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+      4   3.30174  0.16053  3.35503  2.56941      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+      5   0.39178  2.77392  1.65838  2.64108      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+      6   0.14063  3.38993  2.80820  3.29251      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+      7   0.14063  3.38993  2.80820  3.29251      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+      8   2.95426  3.59755  0.11609  3.50324      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+      9   3.44424  0.12889  3.49323  2.83710      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     10   3.44424  0.12889  3.49323  2.83710     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     11   3.03572  2.44757  3.08564  0.19875     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     12   3.09838  2.60135  3.14616  0.17711     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     13   3.25955  0.17093  3.31416  2.49677     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     14   2.95426  3.59755  0.11609  3.50324     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     15   2.95426  3.59755  0.11609  3.50324     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     16   2.95426  3.59755  0.11609  3.50324     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     17   3.35136  0.14895  3.40309  2.65806     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     18   3.33783  0.15205  3.38998  2.63348     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     19   2.95426  3.59755  0.11609  3.50324     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     20   0.14063  3.38993  2.80820  3.29251     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     21   2.95426  3.59755  0.11609  3.50324     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     22   2.95426  3.59755  0.11609  3.50324     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     23   2.95426  3.59755  0.11609  3.50324     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     24   3.44424  0.12889  3.49323  2.83710     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     25   0.14063  3.38993  2.80820  3.29251     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     26   3.44424  0.12889  3.49323  2.83710     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     27   2.95426  3.59755  0.11609  3.50324     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     28   3.00267  2.37154  3.05383  0.21093     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     29   3.44424  0.12889  3.49323  2.83710     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     30   3.09838  2.60135  3.14616  0.17711     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     31   2.95426  3.59755  0.11609  3.50324     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     32   3.44424  0.12889  3.49323  2.83710     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     33   3.44424  0.12889  3.49323  2.83710     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     34   3.09838  2.60135  3.14616  0.17711     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     35   2.95426  3.59755  0.11609  3.50324     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     36   2.95426  3.59755  0.11609  3.50324     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     37   2.95426  3.59755  0.11609  3.50324     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     38   3.09838  2.60135  3.14616  0.17711     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     39   2.95426  3.59755  0.11609  3.50324     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     40   3.09838  2.60135  3.14616  0.17711     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     41   3.44424  0.12889  3.49323  2.83710     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     42   0.14063  3.38993  2.80820  3.29251     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     43   3.09838  2.60135  3.14616  0.17711     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     44   2.55487  3.39693  0.16062  3.29129     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03668  4.01693  4.01693  1.46634  0.26236  1.09861  0.40547
+     45   2.69179  1.73920  2.75435  0.36683     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01851  3.99876        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fourteena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:58:34 2012
+NSEQ  22
+EFFN  3.279053
+CKSUM 925715289
+STATS LOCAL MSV       -8.1455  0.71932
+STATS LOCAL VITERBI   -7.7758  0.71932
+STATS LOCAL FORWARD   -3.6982  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93052  1.08270  1.09008  1.71448
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  0.00000        *
+      1   2.93769  3.57346  0.11874  3.47665      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+      2   3.41689  0.13216  3.46703  2.81717      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+      3   3.41689  0.13216  3.46703  2.81717      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+      4   3.41689  0.13216  3.46703  2.81717      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+      5   2.93769  3.57346  0.11874  3.47665      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+      6   0.14377  3.36619  2.79278  3.26653      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+      7   0.14377  3.36619  2.79278  3.26653      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+      8   2.93769  3.57346  0.11874  3.47665      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+      9   3.41689  0.13216  3.46703  2.81717      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     10   3.41689  0.13216  3.46703  2.81717     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     11   3.07443  2.58612  3.12313  0.18098     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     12   2.94214  2.27790  2.99548  0.22975     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     13   2.67926  0.40755  2.74840  1.59911     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     14   2.51627  0.56322  2.58799  1.29210     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     15   2.93769  3.57346  0.11874  3.47665     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     16   2.93769  3.57346  0.11874  3.47665     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     17   3.41689  0.13216  3.46703  2.81717     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     18   3.41689  0.13216  3.46703  2.81717     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     19   2.93769  3.57346  0.11874  3.47665     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     20   0.14377  3.36619  2.79278  3.26653     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     21   2.93769  3.57346  0.11874  3.47665     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     22   2.93769  3.57346  0.11874  3.47665     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     23   2.93769  3.57346  0.11874  3.47665     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     24   3.41689  0.13216  3.46703  2.81717     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     25   0.14377  3.36619  2.79278  3.26653     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     26   3.41689  0.13216  3.46703  2.81717     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     27   2.93769  3.57346  0.11874  3.47665     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     28   3.41689  0.13216  3.46703  2.81717     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     29   3.41689  0.13216  3.46703  2.81717     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     30   3.07443  2.58612  3.12313  0.18098     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     31   2.93769  3.57346  0.11874  3.47665     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     32   3.41689  0.13216  3.46703  2.81717     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     33   3.41689  0.13216  3.46703  2.81717     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     34   3.07443  2.58612  3.12313  0.18098     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     35   2.93769  3.57346  0.11874  3.47665     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     36   2.93769  3.57346  0.11874  3.47665     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     37   2.93769  3.57346  0.11874  3.47665     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     38   3.07443  2.58612  3.12313  0.18098     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     39   2.93769  3.57346  0.11874  3.47665     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     40   3.07443  2.58612  3.12313  0.18098     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     41   3.41689  0.13216  3.46703  2.81717     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     42   0.14377  3.36619  2.79278  3.26653     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     43   3.07443  2.58612  3.12313  0.18098     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     44   2.93769  3.57346  0.11874  3.47665     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
+     45   3.41689  0.13216  3.46703  2.81717     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01877  3.98510        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fourteenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:58:43 2012
+NSEQ  70
+EFFN  5.088501
+CKSUM 3721269259
+STATS LOCAL MSV       -6.9134  0.71932
+STATS LOCAL VITERBI   -7.5879  0.71932
+STATS LOCAL FORWARD   -3.9680  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74852  1.17930  1.12647  1.63836
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  0.00000        *
+      1   3.23147  4.00602  0.07995  3.95644      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+      2   3.91828  0.08456  3.94536  3.17332      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+      3   3.91828  0.08456  3.94536  3.17332      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+      4   3.91828  0.08456  3.94536  3.17332      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+      5   0.79959  2.79109  0.87053  2.65351      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+      6   0.09584  3.81176  3.08128  3.75595      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+      7   0.15518  3.59484  2.44690  3.51624      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+      8   3.23147  4.00602  0.07995  3.95644      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+      9   3.91828  0.08456  3.94536  3.17332      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     10   3.68591  0.13033  3.72518  2.61710     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     11   1.02535  2.25303  1.99463  0.91583     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     12   3.54765  2.88869  3.57783  0.11921     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     13   2.86796  1.36880  2.92992  0.45354     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     14   0.92182  2.35489  2.37750  0.88063     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     15   3.00728  3.52277  0.15387  2.75403     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     16   3.23147  4.00602  0.07995  3.95644     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     17   2.70343  0.91545  2.77157  0.75476     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     18   2.70302  0.91159  2.77119  0.75817     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     19   2.57166  3.76703  0.13292  3.69155     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     20   0.09584  3.81176  3.08128  3.75595     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     21   3.23147  4.00602  0.07995  3.95644     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     22   3.23147  4.00602  0.07995  3.95644     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     23   3.23147  4.00602  0.07995  3.95644     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     24   3.91828  0.08456  3.94536  3.17332     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     25   0.09584  3.81176  3.08128  3.75595     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     26   3.91828  0.08456  3.94536  3.17332     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     27   3.23147  4.00602  0.07995  3.95644     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     28   2.90699  1.44095  2.96753  0.41973     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     29   3.91828  0.08456  3.94536  3.17332     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     30   3.54765  2.88869  3.57783  0.11921     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     31   3.23147  4.00602  0.07995  3.95644     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     32   2.92260  0.28356  2.11528  2.62403     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     33   3.91828  0.08456  3.94536  3.17332     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     34   3.54765  2.88869  3.57783  0.11921     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     35   3.23147  4.00602  0.07995  3.95644     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     36   3.23147  4.00602  0.07995  3.95644     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     37   3.23147  4.00602  0.07995  3.95644     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     38   3.25886  2.10105  3.30452  0.21999     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     39   3.23147  4.00602  0.07995  3.95644     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     40   3.54765  2.88869  3.57783  0.11921     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     41   3.91828  0.08456  3.94536  3.17332     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     42   0.16564  3.56007  2.37153  3.47792     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     43   3.91828  0.08456  3.94536  3.17332     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     44   0.45840  2.95212  1.36221  2.82373     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02782  4.28888  4.28888  1.46634  0.26236  1.09861  0.40547
+     45   2.48432  0.20130  3.26267  2.80243     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01401  4.27507        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_fourteenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:58:51 2012
+NSEQ  76
+EFFN  3.576416
+CKSUM 815551676
+STATS LOCAL MSV       -7.3595  0.71933
+STATS LOCAL VITERBI   -7.6264  0.71933
+STATS LOCAL FORWARD   -3.7388  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71585  1.10671  1.18523  1.69354
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  0.00000        *
+      1   3.00112  3.66619  0.10893  3.57914      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+      2   3.52263  0.12002  3.56821  2.89372      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+      3   3.52263  0.12002  3.56821  2.89372      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+      4   3.33822  0.15991  3.39007  2.54371      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+      5   2.76693  0.29348  2.48446  2.22463      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+      6   0.13203  3.45816  2.85229  3.36731      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+      7   0.13203  3.45816  2.85229  3.36731      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+      8   2.79755  3.57585  0.12743  3.48359      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+      9   3.52263  0.12002  3.56821  2.89372      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     10   3.52263  0.12002  3.56821  2.89372     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     11   2.35672  2.47836  2.82474  0.27172     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     12   2.35672  2.47836  2.82474  0.27172     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     13   3.04627  0.24542  3.10719  2.07654     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     14   2.03581  2.24688  2.01567  0.46130     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     15   3.00112  3.66619  0.10893  3.57914     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     16   3.00112  3.66619  0.10893  3.57914     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     17   3.35009  0.15709  3.40153  2.56431     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     18   3.33595  0.16045  3.38788  2.53979     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     19   2.83488  3.59354  0.12369  3.50246     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     20   0.13203  3.45816  2.85229  3.36731     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     21   3.00112  3.66619  0.10893  3.57914     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     22   3.00112  3.66619  0.10893  3.57914     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     23   3.00112  3.66619  0.10893  3.57914     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     24   3.52263  0.12002  3.56821  2.89372     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     25   0.13203  3.45816  2.85229  3.36731     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     26   3.52263  0.12002  3.56821  2.89372     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     27   3.00112  3.66619  0.10893  3.57914     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     28   3.16795  2.64551  3.21304  0.16640     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     29   3.52263  0.12002  3.56821  2.89372     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     30   3.16795  2.64551  3.21304  0.16640     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     31   3.00112  3.66619  0.10893  3.57914     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     32   3.52263  0.12002  3.56821  2.89372     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     33   3.52263  0.12002  3.56821  2.89372     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     34   3.16795  2.64551  3.21304  0.16640     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     35   3.00112  3.66619  0.10893  3.57914     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     36   3.00112  3.66619  0.10893  3.57914     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     37   3.00112  3.66619  0.10893  3.57914     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     38   2.95253  2.14756  3.00617  0.24649     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     39   3.00112  3.66619  0.10893  3.57914     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     40   3.16795  2.64551  3.21304  0.16640     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     41   3.52263  0.12002  3.56821  2.89372     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     42   0.13203  3.45816  2.85229  3.36731     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     43   3.52263  0.12002  3.56821  2.89372     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     44   0.13203  3.45816  2.85229  3.36731     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05637  4.05637  1.46634  0.26236  1.09861  0.40547
+     45   0.22308  2.59280  2.65587  2.90222     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01777  4.03891        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_nine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:57:25 2012
+NSEQ  19
+EFFN  3.604248
+CKSUM 3064978032
+STATS LOCAL MSV       -7.4838  0.71932
+STATS LOCAL VITERBI   -7.7664  0.71932
+STATS LOCAL FORWARD   -4.0255  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74205  1.14988  1.13928  1.67071
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  0.00000        *
+      1   3.00664  3.67433  0.10811  3.58816      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+      2   3.53197  0.11901  3.57713  2.90043      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+      3   3.53197  0.11901  3.57713  2.90043      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+      4   3.10101  0.22787  3.16041  2.15106      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+      5   3.00664  3.67433  0.10811  3.58816      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+      6   0.13104  3.46632  2.85754  3.37625      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+      7   0.13104  3.46632  2.85754  3.37625      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+      8   0.57908  2.63204  1.25561  2.49191      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+      9   3.53197  0.11901  3.57713  2.90043      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     10   3.53197  0.11901  3.57713  2.90043     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     11   0.13104  3.46632  2.85754  3.37625     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     12   2.48868  1.14773  2.55863  0.64968     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     13   3.17633  2.65083  3.22110  0.16516     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     14   2.67716  0.44679  2.74640  1.48101     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     15   3.00664  3.67433  0.10811  3.58816     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     16   3.00664  3.67433  0.10811  3.58816     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     17   3.17633  2.65083  3.22110  0.16516     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     18   3.17633  2.65083  3.22110  0.16516     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     19   3.00664  3.67433  0.10811  3.58816     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     20   0.13104  3.46632  2.85754  3.37625     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     21   1.40422  2.73373  0.48649  2.59447     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     22   3.00664  3.67433  0.10811  3.58816     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     23   3.00664  3.67433  0.10811  3.58816     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     24   3.53197  0.11901  3.57713  2.90043     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     25   0.13104  3.46632  2.85754  3.37625     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     26   3.53197  0.11901  3.57713  2.90043     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     27   3.00664  3.67433  0.10811  3.58816     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     28   3.17633  2.65083  3.22110  0.16516     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     29   3.53197  0.11901  3.57713  2.90043     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     30   3.17633  2.65083  3.22110  0.16516     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     31   3.00664  3.67433  0.10811  3.58816     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     32   3.53197  0.11901  3.57713  2.90043     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     33   3.53197  0.11901  3.57713  2.90043     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     34   3.17633  2.65083  3.22110  0.16516     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     35   3.00664  3.67433  0.10811  3.58816     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     36   3.00664  3.67433  0.10811  3.58816     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     37   3.00664  3.67433  0.10811  3.58816     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     38   3.53197  0.11901  3.57713  2.90043     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     39   3.00664  3.67433  0.10811  3.58816     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     40   3.17633  2.65083  3.22110  0.16516     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     41   3.53197  0.11901  3.57713  2.90043     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     42   0.13104  3.46632  2.85754  3.37625     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     43   3.53197  0.11901  3.57713  2.90043     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     44   3.00664  3.67433  0.10811  3.58816     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03507  4.06117  4.06117  1.46634  0.26236  1.09861  0.40547
+     45   3.53197  0.11901  3.57713  2.90043     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01769  4.04380        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_nineteena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:02:03 2012
+NSEQ  28
+EFFN  3.394043
+CKSUM 1268754513
+STATS LOCAL MSV       -7.3768  0.71932
+STATS LOCAL VITERBI   -7.8823  0.71932
+STATS LOCAL FORWARD   -3.6277  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.89704  1.12183  1.05905  1.72866
+          1.38629  1.38629  1.38629  1.38629
+          0.03641  4.02429  4.02429  1.46634  0.26236  0.00000        *
+      1   2.96321  3.61061  0.11469  3.51767      1 - -
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+     43   2.56629  1.46611  2.63304  0.47723     43 - -
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+     45   3.45911  0.12715  3.50746  2.84789     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01837  4.00625        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_nineteenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:02:11 2012
+NSEQ  23
+EFFN  3.433716
+CKSUM 1681062768
+STATS LOCAL MSV       -7.2331  0.71933
+STATS LOCAL VITERBI   -7.7346  0.71933
+STATS LOCAL FORWARD   -3.7798  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81746  1.11882  1.08211  1.76016
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  0.00000        *
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+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     43   3.47328  0.12552  3.52102  2.85815     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     44   2.97172  3.62305  0.11337  3.53141     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
+     45   3.47328  0.12552  3.52102  2.85815     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01824  4.01344        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_nineteenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:02:26 2012
+NSEQ  7
+EFFN  3.052246
+CKSUM 1936706614
+STATS LOCAL MSV       -8.1766  0.71933
+STATS LOCAL VITERBI   -7.8521  0.71933
+STATS LOCAL FORWARD   -3.2521  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93182  1.01394  1.09971  1.83657
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  0.00000        *
+      1   2.88322  3.49501  0.12784  3.39028      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+      2   3.32843  0.14342  3.38220  2.75214      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+      3   3.32843  0.14342  3.38220  2.75214      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+      4   3.32843  0.14342  3.38220  2.75214      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+      5   3.32843  0.14342  3.38220  2.75214      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+      6   0.15447  3.28965  2.74264  3.18289      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+      7   0.15447  3.28965  2.74264  3.18289      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+      8   2.88322  3.49501  0.12784  3.39028      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+      9   3.32843  0.14342  3.38220  2.75214      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     10   3.32843  0.14342  3.38220  2.75214     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     11   2.99804  2.53734  3.04961  0.19400     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     12   2.99804  2.53734  3.04961  0.19400     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     13   3.32843  0.14342  3.38220  2.75214     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     14   2.88322  3.49501  0.12784  3.39028     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     15   2.88322  3.49501  0.12784  3.39028     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     16   2.88322  3.49501  0.12784  3.39028     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     17   3.32843  0.14342  3.38220  2.75214     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     18   3.32843  0.14342  3.38220  2.75214     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     19   2.88322  3.49501  0.12784  3.39028     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     20   0.15447  3.28965  2.74264  3.18289     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     21   2.88322  3.49501  0.12784  3.39028     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     22   2.88322  3.49501  0.12784  3.39028     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     23   2.88322  3.49501  0.12784  3.39028     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     24   3.32843  0.14342  3.38220  2.75214     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     25   0.15447  3.28965  2.74264  3.18289     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     26   3.32843  0.14342  3.38220  2.75214     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     27   2.88322  3.49501  0.12784  3.39028     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     28   3.32843  0.14342  3.38220  2.75214     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     29   2.99804  2.53734  3.04961  0.19400     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     30   2.99804  2.53734  3.04961  0.19400     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     31   2.88322  3.49501  0.12784  3.39028     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     32   3.32843  0.14342  3.38220  2.75214     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     33   3.32843  0.14342  3.38220  2.75214     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     34   2.99804  2.53734  3.04961  0.19400     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     35   2.88322  3.49501  0.12784  3.39028     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     36   2.88322  3.49501  0.12784  3.39028     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     37   2.88322  3.49501  0.12784  3.39028     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     38   3.32843  0.14342  3.38220  2.75214     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     39   2.88322  3.49501  0.12784  3.39028     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     40   2.99804  2.53734  3.04961  0.19400     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     41   3.32843  0.14342  3.38220  2.75214     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     42   0.15447  3.28965  2.74264  3.18289     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     43   3.32843  0.14342  3.38220  2.75214     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     44   2.88322  3.49501  0.12784  3.39028     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03882  3.96124  3.96124  1.46634  0.26236  1.09861  0.40547
+     45   3.32843  0.14342  3.38220  2.75214     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01960  3.94202        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_nineteend_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:02:37 2012
+NSEQ  856
+EFFN  5.554413
+CKSUM 733056095
+STATS LOCAL MSV       -6.6456  0.71932
+STATS LOCAL VITERBI   -7.5969  0.71932
+STATS LOCAL FORWARD   -3.9880  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74504  1.15587  1.11456  1.70091
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  0.00000        *
+      1   3.23345  3.95902  0.09091  3.56135      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+      2   4.00514  0.07838  4.02816  3.23494      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+      3   3.96337  0.08642  3.98881  3.09507      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+      4   3.84642  0.10955  3.87859  2.78499      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+      5   1.61944  2.42984  0.45902  2.50057      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+      6   0.09745  3.86160  3.00225  3.81028      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+      7   0.29717  2.86598  2.35447  2.25176      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+      8   2.97800  3.78889  0.10313  3.71027      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+      9   4.00514  0.07838  4.02816  3.23494      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     10   3.95927  0.08721  3.98496  3.08242     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     11   0.47869  2.44590  2.14476  1.73351     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     12   3.53226  2.57566  3.56532  0.14344     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     13   3.17703  2.21298  3.20717  0.21264     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     14   0.48947  2.12807  2.31988  1.77374     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     15   3.23908  3.63645  0.08938  3.91407     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     16   3.28325  4.08014  0.07476  4.03840     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     17   2.61871  0.71582  2.56034  1.01879     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     18   2.79100  0.98435  2.85745  0.67818     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     19   2.88958  3.91627  0.10528  3.71275     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     20   0.10529  3.83285  2.89277  3.77822     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     21   3.13578  4.04625  0.08257  4.00081     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     22   3.28325  4.08014  0.07476  4.03840     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     23   3.14551  4.04868  0.08201  4.00351     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     24   4.00514  0.07838  4.02816  3.23494     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     25   0.10009  3.59942  3.10949  3.75993     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     26   3.91614  0.09562  3.94435  2.95832     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     27   3.25566  3.77958  0.08388  3.95951     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     28   2.83114  0.59636  2.89858  1.09321     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     29   4.00514  0.07838  4.02816  3.23494     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     30   3.27989  2.81282  3.53878  0.13550     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     31   3.28325  4.08014  0.07476  4.03840     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     32   4.00514  0.07838  4.02816  3.23494     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     33   3.92955  0.09299  3.95697  2.99526     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     34   3.60551  2.81966  3.63419  0.12014     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     35   3.14615  4.04883  0.08198  4.00369     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     36   3.28325  4.08014  0.07476  4.03840     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     37   3.28325  4.08014  0.07476  4.03840     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     38   3.12209  1.65978  3.17582  0.32297     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     39   3.28325  4.08014  0.07476  4.03840     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     40   3.63936  2.94947  3.66605  0.11005     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     41   3.91395  0.09096  3.78906  3.11522     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     42   0.11267  3.77567  2.89076  3.57194     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     43   3.71094  0.09575  3.91271  3.06052     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     44   0.69515  2.09592  1.51651  1.84157     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02613  4.35085  4.35085  1.46634  0.26236  1.09861  0.40547
+     45   1.71415  0.62668  2.27327  1.70075     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01315  4.33787        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:55:14 2012
+NSEQ  587
+EFFN  3.891777
+CKSUM 1697391222
+STATS LOCAL MSV       -7.1697  0.71931
+STATS LOCAL VITERBI   -7.5248  0.71931
+STATS LOCAL FORWARD   -3.7808  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71133  1.10198  1.09475  1.88033
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  0.00000        *
+      1   3.06016  3.75344  0.10053  3.67589      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+      2   3.62320  0.10965  3.66422  2.96550      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+      3   3.56594  0.12071  3.60913  2.84114      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+      4   3.36563  0.16464  3.41655  2.47178      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+      5   2.81056  3.64966  0.12157  3.56477      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+      6   0.12179  3.54633  2.90895  3.46414      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+      7   0.17514  3.06396  2.62741  3.17743      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+      8   2.91815  3.69722  0.11173  3.61602      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+      9   3.56658  0.12058  3.60974  2.84245      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     10   3.62320  0.10965  3.66422  2.96550     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     11   0.20648  3.24919  2.25688  3.14477     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     12   2.93498  1.96420  2.99032  0.27928     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     13   2.57765  1.24737  2.64559  0.56947     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     14   0.12179  3.54633  2.90895  3.46414     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     15   3.06016  3.75344  0.10053  3.67589     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     16   3.06016  3.75344  0.10053  3.67589     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     17   2.85229  0.35474  2.91819  1.67717     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     18   3.17254  0.21846  3.23000  2.16467     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     19   2.62184  3.38064  0.15152  3.38409     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     20   0.12179  3.54633  2.90895  3.46414     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     21   2.92968  3.70206  0.11075  3.62122     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     22   3.06016  3.75344  0.10053  3.67589     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     23   3.06016  3.75344  0.10053  3.67589     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     24   3.62320  0.10965  3.66422  2.96550     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     25   0.12179  3.54633  2.90895  3.46414     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     26   3.62320  0.10965  3.66422  2.96550     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     27   3.06016  3.75344  0.10053  3.67589     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     28   2.85132  1.80401  2.90988  0.32419     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     29   3.62320  0.10965  3.66422  2.96550     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     30   3.25952  2.70356  3.30102  0.15341     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     31   3.06016  3.75344  0.10053  3.67589     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     32   3.62320  0.10965  3.66422  2.96550     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     33   3.51379  0.13127  3.55903  2.73696     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     34   3.25952  2.70356  3.30102  0.15341     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     35   3.06016  3.75344  0.10053  3.67589     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     36   3.06016  3.75344  0.10053  3.67589     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     37   3.06016  3.75344  0.10053  3.67589     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     38   3.13791  0.22977  3.19643  2.11195     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     39   3.06016  3.75344  0.10053  3.67589     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     40   3.25952  2.70356  3.30102  0.15341     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     41   3.62320  0.10965  3.66422  2.96550     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     42   0.15696  3.41095  2.57610  3.31922     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     43   3.27489  0.13187  3.50961  2.88566     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     44   1.30792  2.73853  0.52656  2.59939     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03338  4.10952  4.10952  1.46634  0.26236  1.09861  0.40547
+     45   3.16945  0.21944  3.22700  2.15995     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01683  4.09297        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_sevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:56:45 2012
+NSEQ  310
+EFFN  3.855133
+CKSUM 3216610733
+STATS LOCAL MSV       -7.0299  0.71931
+STATS LOCAL VITERBI   -7.7698  0.71931
+STATS LOCAL FORWARD   -3.9428  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.67405  1.19795  1.11767  1.69466
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  0.00000        *
+      1   3.05368  3.74384  0.10142  3.66524      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+      2   3.61208  0.11075  3.65362  2.95761      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+      3   3.61208  0.11075  3.65362  2.95761      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+      4   2.59107  1.29979  2.65845  0.54057      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+      5   3.05368  3.74384  0.10142  3.66524      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+      6   0.12288  3.53654  2.90267  3.45338      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+      7   0.12288  3.53654  2.90267  3.45338      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+      8   2.98957  3.60522  0.12061  3.32062      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+      9   3.61208  0.11075  3.65362  2.95761      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     10   3.61208  0.11075  3.65362  2.95761     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     11   0.16647  3.30347  2.72562  2.97421     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     12   3.18560  2.52848  3.23014  0.17517     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     13   2.50599  0.79710  2.57733  0.93702     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     14   0.27114  2.82965  2.52499  2.31874     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     15   3.05368  3.74384  0.10142  3.66524     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     16   3.05368  3.74384  0.10142  3.66524     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     17   2.46692  1.31463  2.58990  0.55940     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     18   2.95659  2.02338  3.01095  0.26585     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     19   2.53330  3.49926  0.15422  3.40229     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     20   0.12288  3.53654  2.90267  3.45338     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     21   0.50829  2.72162  1.35743  2.58515     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     22   3.05368  3.74384  0.10142  3.66524     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     23   3.05368  3.74384  0.10142  3.66524     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     24   3.61208  0.11075  3.65362  2.95761     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     25   0.12288  3.53654  2.90267  3.45338     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     26   3.61208  0.11075  3.65362  2.95761     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     27   3.05368  3.74384  0.10142  3.66524     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     28   3.15074  2.44306  3.19681  0.18706     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     29   3.61208  0.11075  3.65362  2.95761     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     30   3.24926  2.69705  3.29116  0.15480     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     31   3.05368  3.74384  0.10142  3.66524     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     32   3.61208  0.11075  3.65362  2.95761     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     33   3.41158  0.15244  3.46077  2.56405     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     34   3.24926  2.69705  3.29116  0.15480     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     35   3.05368  3.74384  0.10142  3.66524     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     36   3.05368  3.74384  0.10142  3.66524     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     37   3.05368  3.74384  0.10142  3.66524     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     38   3.53725  0.12537  3.58159  2.79845     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     39   3.05368  3.74384  0.10142  3.66524     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     40   3.24926  2.69705  3.29116  0.15480     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     41   3.61208  0.11075  3.65362  2.95761     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     42   0.12288  3.53654  2.90267  3.45338     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     43   3.61208  0.11075  3.65362  2.95761     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     44   2.89872  3.68146  0.11388  3.59882     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03359  4.10349  4.10349  1.46634  0.26236  1.09861  0.40547
+     45   3.55506  0.12180  3.59872  2.83466     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01693  4.08684        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_sevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:56:54 2012
+NSEQ  184
+EFFN  4.096313
+CKSUM 2897657156
+STATS LOCAL MSV       -7.4526  0.71932
+STATS LOCAL VITERBI   -7.5187  0.71932
+STATS LOCAL FORWARD   -3.9319  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73723  1.11401  1.12992  1.75624
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  0.00000        *
+      1   3.09467  3.80465  0.09594  3.73279      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+      2   3.55672  0.12851  3.60023  2.73722      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+      3   3.53201  0.13366  3.57655  2.68978      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+      4   3.33147  0.18101  3.38384  2.34426      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+      5   2.02324  2.72720  0.29637  2.83260      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+      6   0.11611  3.59888  2.94269  3.52192      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+      7   0.21327  2.87621  2.62174  2.76401      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+      8   3.09467  3.80465  0.09594  3.73279      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+      9   3.62514  0.11488  3.66575  2.87711      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     10   3.68265  0.10401  3.72091  3.00757     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     11   0.11611  3.59888  2.94269  3.52192     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     12   3.06832  2.13915  3.11882  0.23378     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     13   3.04696  2.09498  3.09839  0.24296     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     14   0.13047  3.54101  2.78212  3.46007     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     15   3.09467  3.80465  0.09594  3.73279     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     16   3.09467  3.80465  0.09594  3.73279     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     17   3.31413  0.18568  3.36711  2.31667     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     18   2.65424  0.47357  2.66048  1.43988     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     19   2.77225  3.46439  0.13224  3.50459     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     20   0.11611  3.59888  2.94269  3.52192     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     21   2.73642  3.65689  0.12634  3.57310     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     22   3.09467  3.80465  0.09594  3.73279     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     23   3.09467  3.80465  0.09594  3.73279     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     24   3.33501  0.12429  3.57448  2.93312     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     25   0.11611  3.59888  2.94269  3.52192     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     26   3.61888  0.11609  3.65976  2.86371     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     27   3.09467  3.80465  0.09594  3.73279     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     28   3.06936  2.14133  3.11982  0.23334     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     29   3.68265  0.10401  3.72091  3.00757     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     30   3.31505  2.73883  3.35436  0.14608     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     31   3.09467  3.80465  0.09594  3.73279     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     32   3.51746  0.13675  3.56261  2.66251     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     33   3.55003  0.12990  3.59382  2.72424     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     34   3.31505  2.73883  3.35436  0.14608     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     35   3.09467  3.80465  0.09594  3.73279     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     36   3.09467  3.80465  0.09594  3.73279     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     37   3.09467  3.80465  0.09594  3.73279     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     38   3.38555  0.15427  3.27515  2.64099     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     39   2.94006  3.74674  0.10749  3.67066     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     40   3.31505  2.73883  3.35436  0.14608     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     41   2.84891  0.20155  2.98732  2.60085     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     42   1.72403  2.16146  2.48249  0.47327     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     43   3.56741  0.12633  3.61046  2.75818     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     44   0.41750  2.70260  1.70268  2.38509     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03228  4.14255  4.14255  1.46634  0.26236  1.09861  0.40547
+     45   3.52354  0.13546  3.56843  2.67384     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01627  4.12654        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_seventeen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:01:38 2012
+NSEQ  21
+EFFN  3.242798
+CKSUM 1804940685
+STATS LOCAL MSV       -8.0506  0.71931
+STATS LOCAL VITERBI   -7.8621  0.71931
+STATS LOCAL FORWARD   -3.9865  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54969  1.31844  1.19398  1.52729
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  0.00000        *
+      1   2.92936  3.56139  0.12009  3.46334      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+      2   3.40322  0.13383  3.45393  2.80719      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+      3   3.40322  0.13383  3.45393  2.80719      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+      4   3.06252  2.57853  3.11167  0.18294      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+      5   2.92936  3.56139  0.12009  3.46334      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+      6   0.14537  3.35434  2.78506  3.25357      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+      7   0.14537  3.35434  2.78506  3.25357      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+      8   0.14537  3.35434  2.78506  3.25357      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+      9   3.40322  0.13383  3.45393  2.80719      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     10   3.40322  0.13383  3.45393  2.80719     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     11   0.14537  3.35434  2.78506  3.25357     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     12   3.06252  2.57853  3.11167  0.18294     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     13   3.06252  2.57853  3.11167  0.18294     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     14   0.14537  3.35434  2.78506  3.25357     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     15   2.92936  3.56139  0.12009  3.46334     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     16   2.92936  3.56139  0.12009  3.46334     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     17   3.06252  2.57853  3.11167  0.18294     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     18   3.06252  2.57853  3.11167  0.18294     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     19   2.92936  3.56139  0.12009  3.46334     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     20   0.14537  3.35434  2.78506  3.25357     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     21   2.92936  3.56139  0.12009  3.46334     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     22   2.92936  3.56139  0.12009  3.46334     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     23   2.92936  3.56139  0.12009  3.46334     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     24   3.40322  0.13383  3.45393  2.80719     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     25   0.14537  3.35434  2.78506  3.25357     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     26   3.40322  0.13383  3.45393  2.80719     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     27   2.92936  3.56139  0.12009  3.46334     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     28   2.59442  1.59732  2.65985  0.42631     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     29   3.40322  0.13383  3.45393  2.80719     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     30   3.06252  2.57853  3.11167  0.18294     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     31   2.92936  3.56139  0.12009  3.46334     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     32   3.40322  0.13383  3.45393  2.80719     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     33   3.40322  0.13383  3.45393  2.80719     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     34   3.06252  2.57853  3.11167  0.18294     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     35   2.92936  3.56139  0.12009  3.46334     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     36   2.92936  3.56139  0.12009  3.46334     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     37   2.92936  3.56139  0.12009  3.46334     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     38   3.06252  2.57853  3.11167  0.18294     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     39   2.92936  3.56139  0.12009  3.46334     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     40   3.06252  2.57853  3.11167  0.18294     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     41   3.40322  0.13383  3.45393  2.80719     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     42   0.14537  3.35434  2.78506  3.25357     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     43   3.40322  0.13383  3.45393  2.80719     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     44   0.14537  3.35434  2.78506  3.25357     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03744  3.99688  3.99688  1.46634  0.26236  1.09861  0.40547
+     45   3.40322  0.13383  3.45393  2.80719     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01889  3.97833        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:56:35 2012
+NSEQ  53
+EFFN  3.768616
+CKSUM 2228915480
+STATS LOCAL MSV       -7.1018  0.71931
+STATS LOCAL VITERBI   -7.4669  0.71931
+STATS LOCAL FORWARD   -3.6610  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73514  1.11339  1.10213  1.81389
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  0.00000        *
+      1   3.03800  3.72062  0.10360  3.63948      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+      2   3.58526  0.11344  3.62802  2.93853      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+      3   3.58526  0.11344  3.62802  2.93853      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+      4   3.22322  0.19760  3.27897  2.28465      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+      5   2.45755  3.43624  0.16660  3.33445      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+      6   0.12555  3.51297  2.88754  3.42748      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+      7   0.12555  3.51297  2.88754  3.42748      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+      8   3.03800  3.72062  0.10360  3.63948      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+      9   3.58526  0.11344  3.62802  2.93853      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     10   3.58526  0.11344  3.62802  2.93853     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     11   0.61343  2.31223  2.08242  1.44883     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     12   3.05803  2.27604  3.10788  0.21612     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     13   2.92548  2.00153  2.98079  0.27381     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     14   0.12555  3.51297  2.88754  3.42748     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     15   3.03800  3.72062  0.10360  3.63948     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     16   2.94024  3.23793  0.13365  3.41110     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     17   3.58526  0.11344  3.62802  2.93853     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     18   3.23244  0.16906  2.94715  2.75527     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     19   2.11016  2.43820  0.51231  1.64843     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     20   0.12555  3.51297  2.88754  3.42748     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     21   3.03800  3.72062  0.10360  3.63948     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     22   3.03800  3.72062  0.10360  3.63948     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     23   3.03800  3.72062  0.10360  3.63948     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     24   3.58526  0.11344  3.62802  2.93853     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     25   0.12555  3.51297  2.88754  3.42748     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     26   3.58526  0.11344  3.62802  2.93853     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     27   3.03800  3.72062  0.10360  3.63948     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     28   3.22464  2.68145  3.26752  0.15822     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     29   3.58526  0.11344  3.62802  2.93853     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     30   3.22464  2.68145  3.26752  0.15822     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     31   3.03800  3.72062  0.10360  3.63948     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     32   3.58526  0.11344  3.62802  2.93853     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     33   1.52707  0.55184  2.39442  2.15661     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     34   3.22464  2.68145  3.26752  0.15822     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     35   3.03800  3.72062  0.10360  3.63948     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     36   3.03800  3.72062  0.10360  3.63948     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     37   3.03800  3.72062  0.10360  3.63948     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     38   3.58526  0.11344  3.62802  2.93853     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     39   3.03800  3.72062  0.10360  3.63948     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     40   3.22464  2.68145  3.26752  0.15822     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     41   3.58526  0.11344  3.62802  2.93853     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     42   0.12555  3.51297  2.88754  3.42748     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     43   3.58526  0.11344  3.62802  2.93853     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     44   2.33055  3.35882  0.18721  3.25152     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03408  4.08910  4.08910  1.46634  0.26236  1.09861  0.40547
+     45   3.15566  0.21804  3.21353  2.17963     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01719  4.07220        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_sixteena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:00:03 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4271773268
+STATS LOCAL MSV       -7.4881  0.72737
+STATS LOCAL VITERBI   -8.2452  0.72737
+STATS LOCAL FORWARD   -3.2511  0.72737
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.74640  1.19459  1.17033  1.54879
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_sixteenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:00:16 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3116648824
+STATS LOCAL MSV       -7.5374  0.72780
+STATS LOCAL VITERBI   -8.1699  0.72780
+STATS LOCAL FORWARD   -3.2302  0.72780
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63616  1.14978  1.19874  1.67669
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.92825  2.28391  0.95698  2.13014      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.57915  2.25909  2.64442  0.28946     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_sixteenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:00:32 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3328582486
+STATS LOCAL MSV       -7.5913  0.72754
+STATS LOCAL VITERBI   -8.2420  0.72754
+STATS LOCAL FORWARD   -3.2668  0.72754
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.58895  1.23335  1.11811  1.72796
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.15554  1.00938  2.23102  0.88601     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_sixteend_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:00:44 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2690199688
+STATS LOCAL MSV       -7.4512  0.72744
+STATS LOCAL VITERBI   -8.1553  0.72744
+STATS LOCAL FORWARD   -3.0217  0.72744
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.52139  1.23657  1.11708  1.80803
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.15554  1.00938  2.23102  0.88601     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_sixteene_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:00:52 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1246193707
+STATS LOCAL MSV       -7.6594  0.72693
+STATS LOCAL VITERBI   -8.3817  0.72693
+STATS LOCAL FORWARD   -3.2424  0.72693
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.67229  1.06970  1.17261  1.83562
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
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+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
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+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
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+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_sixteenf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:00:59 2012
+NSEQ  4
+EFFN  3.324219
+CKSUM 2175191417
+STATS LOCAL MSV       -8.1113  0.71931
+STATS LOCAL VITERBI   -7.7973  0.71931
+STATS LOCAL FORWARD   -4.0579  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81924  1.35994  1.13918  1.34288
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  0.00000        *
+      1   2.94787  3.58826  0.11710  3.49298      1 - -
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+      2   3.43368  0.13014  3.48311  2.82941      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      3   3.43368  0.13014  3.48311  2.82941      3 - -
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+      4   3.43368  0.13014  3.48311  2.82941      4 - -
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+      6   0.14183  3.38076  2.80224  3.28247      6 - -
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+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     44   0.14183  3.38076  2.80224  3.28247     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     45   3.08911  2.59546  3.13724  0.17860     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01861  3.99346        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_sixteeng_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:01:05 2012
+NSEQ  259
+EFFN  5.876663
+CKSUM 2080383098
+STATS LOCAL MSV       -6.8494  0.71932
+STATS LOCAL VITERBI   -7.5742  0.71932
+STATS LOCAL FORWARD   -3.8484  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.87146  1.09869  1.04791  1.81939
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  0.00000        *
+      1   3.25652  3.98041  0.09166  3.49372      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+      2   4.05846  0.07481  4.07906  3.27320      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+      3   4.05846  0.07481  4.07906  3.27320      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+      4   3.38016  0.16154  3.62148  2.42607      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+      5   2.10689  3.33236  0.21172  3.39658      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+      6   0.09953  3.84657  3.13639  3.50842      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+      7   0.58852  1.86574  1.96016  1.90225      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+      8   3.11584  4.08330  0.08205  4.04115      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+      9   3.98375  0.08968  4.00891  3.01571      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     10   4.05846  0.07481  4.07906  3.27320     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     11   1.04282  2.08610  1.36256  1.31913     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     12   3.24936  2.16890  3.03079  0.22487     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     13   2.50608  0.69859  2.71663  1.03556     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     14   0.58777  2.03139  1.77080  1.94430     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     15   3.31584  4.12580  0.07173  4.08866     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     16   3.31584  4.12580  0.07173  4.08866     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     17   3.43429  0.22420  3.48624  1.98066     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     18   2.47272  0.88431  2.68831  0.83322     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     19   2.85814  3.67483  0.12005  3.49358     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     20   0.08513  3.94327  3.17054  3.89984     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     21   3.31584  4.12580  0.07173  4.08866     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     22   3.31584  4.12580  0.07173  4.08866     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     23   3.31584  4.12580  0.07173  4.08866     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     24   4.05846  0.07481  4.07906  3.27320     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     25   0.10856  3.36623  3.11658  3.72778     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     26   4.05846  0.07481  4.07906  3.27320     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     27   3.31584  4.12580  0.07173  4.08866     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     28   2.82645  0.90413  2.89292  0.73299     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     29   4.05846  0.07481  4.07906  3.27320     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     30   3.69746  2.98870  3.72201  0.10461     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     31   3.31584  4.12580  0.07173  4.08866     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     32   4.05846  0.07481  4.07906  3.27320     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     33   3.99165  0.08810  4.01633  3.03977     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     34   3.69746  2.98870  3.72201  0.10461     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     35   3.31584  4.12580  0.07173  4.08866     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     36   3.31584  4.12580  0.07173  4.08866     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     37   3.31584  4.12580  0.07173  4.08866     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     38   2.82444  0.75591  2.89169  0.87805     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     39   3.11214  4.08241  0.08226  4.04015     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     40   3.69746  2.98870  3.72201  0.10461     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     41   4.01227  0.08399  4.03568  3.10564     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     42   0.15862  3.32760  2.98983  2.80508     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     43   3.41107  0.16215  3.37951  2.49351     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     44   2.11068  3.32108  0.21182  3.39258     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02507  4.39156  4.39156  1.46634  0.26236  1.09861  0.40547
+     45   1.65342  0.56510  2.50870  1.83929     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01262  4.37911        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_ten_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:57:35 2012
+NSEQ  5
+EFFN  3.413086
+CKSUM 238757557
+STATS LOCAL MSV       -7.3971  0.71933
+STATS LOCAL VITERBI   -7.6738  0.71933
+STATS LOCAL FORWARD   -3.6720  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81443  1.10894  1.07074  1.80542
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  0.00000        *
+      1   2.96731  3.61661  0.11405  3.52429      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      2   3.46593  0.12636  3.51399  2.85283      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      3   3.46593  0.12636  3.51399  2.85283      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      4   3.46593  0.12636  3.51399  2.85283      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      5   2.96731  3.61661  0.11405  3.52429      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      6   0.13819  3.40877  2.82041  3.31315      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      7   0.13819  3.40877  2.82041  3.31315      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      8   2.96731  3.61661  0.11405  3.52429      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      9   3.46593  0.12636  3.51399  2.85283      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     10   3.46593  0.12636  3.51399  2.85283     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     11   3.11748  2.61349  3.16453  0.17409     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     12   3.11748  2.61349  3.16453  0.17409     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     13   0.13819  3.40877  2.82041  3.31315     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     14   2.13860  2.15474  1.21038  0.75894     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     15   2.96731  3.61661  0.11405  3.52429     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     16   2.96731  3.61661  0.11405  3.52429     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     17   2.45133  0.72657  2.52364  1.04957     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     18   3.46593  0.12636  3.51399  2.85283     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     19   2.96731  3.61661  0.11405  3.52429     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     20   0.13819  3.40877  2.82041  3.31315     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     21   2.96731  3.61661  0.11405  3.52429     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     22   2.96731  3.61661  0.11405  3.52429     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     23   2.96731  3.61661  0.11405  3.52429     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     24   3.46593  0.12636  3.51399  2.85283     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     25   0.13819  3.40877  2.82041  3.31315     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     26   3.46593  0.12636  3.51399  2.85283     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     27   2.96731  3.61661  0.11405  3.52429     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     28   2.46209  1.18607  2.53225  0.63517     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     29   3.46593  0.12636  3.51399  2.85283     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     30   3.11748  2.61349  3.16453  0.17409     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     31   2.96731  3.61661  0.11405  3.52429     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     32   3.46593  0.12636  3.51399  2.85283     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     33   3.46593  0.12636  3.51399  2.85283     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     34   3.11748  2.61349  3.16453  0.17409     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     35   2.96731  3.61661  0.11405  3.52429     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     36   2.96731  3.61661  0.11405  3.52429     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     37   2.96731  3.61661  0.11405  3.52429     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     38   3.46593  0.12636  3.51399  2.85283     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     39   2.96731  3.61661  0.11405  3.52429     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     40   3.11748  2.61349  3.16453  0.17409     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     41   3.46593  0.12636  3.51399  2.85283     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     42   0.13819  3.40877  2.82041  3.31315     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     43   3.46593  0.12636  3.51399  2.85283     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     44   2.96731  3.61661  0.11405  3.52429     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     45   3.46593  0.12636  3.51399  2.85283     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01831  4.00971        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_thirteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:58:21 2012
+NSEQ  14
+EFFN  3.250488
+CKSUM 2478405586
+STATS LOCAL MSV       -8.0795  0.71932
+STATS LOCAL VITERBI   -7.7238  0.71932
+STATS LOCAL FORWARD   -3.7587  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.03469  1.11219  1.04046  1.67584
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  0.00000        *
+      1   2.93114  3.56396  0.11980  3.46618      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      2   3.40613  0.13347  3.45673  2.80932      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      3   3.40613  0.13347  3.45673  2.80932      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      4   3.40613  0.13347  3.45673  2.80932      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      5   2.93114  3.56396  0.11980  3.46618      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      6   0.14502  3.35687  2.78670  3.25633      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      7   2.93114  3.56396  0.11980  3.46618      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      8   2.93114  3.56396  0.11980  3.46618      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      9   3.40613  0.13347  3.45673  2.80932      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     10   3.40613  0.13347  3.45673  2.80932     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     11   3.06506  2.58015  3.11411  0.18252     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     12   3.40613  0.13347  3.45673  2.80932     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     13   1.67950  0.50222  2.40121  2.13927     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     14   3.06506  2.58015  3.11411  0.18252     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     15   2.93114  3.56396  0.11980  3.46618     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     16   2.93114  3.56396  0.11980  3.46618     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     17   2.62030  1.64607  2.68493  0.40618     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     18   3.40613  0.13347  3.45673  2.80932     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     19   2.93114  3.56396  0.11980  3.46618     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     20   0.14502  3.35687  2.78670  3.25633     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     21   2.93114  3.56396  0.11980  3.46618     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     22   2.93114  3.56396  0.11980  3.46618     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     23   2.93114  3.56396  0.11980  3.46618     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     24   3.40613  0.13347  3.45673  2.80932     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     25   0.14502  3.35687  2.78670  3.25633     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     26   3.40613  0.13347  3.45673  2.80932     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     27   2.93114  3.56396  0.11980  3.46618     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     28   3.06506  2.58015  3.11411  0.18252     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     29   3.40613  0.13347  3.45673  2.80932     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     30   3.06506  2.58015  3.11411  0.18252     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     31   2.93114  3.56396  0.11980  3.46618     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     32   3.40613  0.13347  3.45673  2.80932     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     33   3.40613  0.13347  3.45673  2.80932     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     34   3.06506  2.58015  3.11411  0.18252     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     35   2.93114  3.56396  0.11980  3.46618     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     36   2.93114  3.56396  0.11980  3.46618     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     37   2.93114  3.56396  0.11980  3.46618     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     38   3.06506  2.58015  3.11411  0.18252     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     39   2.93114  3.56396  0.11980  3.46618     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     40   3.06506  2.58015  3.11411  0.18252     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     41   3.40613  0.13347  3.45673  2.80932     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     42   0.14502  3.35687  2.78670  3.25633     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     43   3.40613  0.13347  3.45673  2.80932     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     44   2.93114  3.56396  0.11980  3.46618     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     45   3.40613  0.13347  3.45673  2.80932     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01887  3.97977        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_thirty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:08:56 2012
+NSEQ  33
+EFFN  3.452271
+CKSUM 3012843748
+STATS LOCAL MSV       -7.5469  0.71933
+STATS LOCAL VITERBI   -7.9147  0.71933
+STATS LOCAL FORWARD   -3.6482  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.70070  1.09199  1.06893  1.97677
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  0.00000        *
+      1   3.47984  0.12477  3.52729  2.86289      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+      2   2.97564  3.62879  0.11277  3.53776      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+      3   3.47984  0.12477  3.52729  2.86289      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+      4   3.47984  0.12477  3.52729  2.86289      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+      5   3.47984  0.12477  3.52729  2.86289      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+      6   2.97564  3.62879  0.11277  3.53776      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+      7   0.13665  3.42087  2.82823  3.32641      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+      8   2.97564  3.62879  0.11277  3.53776      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+      9   2.97564  3.62879  0.11277  3.53776      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     10   2.97564  3.62879  0.11277  3.53776     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     11   0.13665  3.42087  2.82823  3.32641     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     12   2.42773  0.91647  2.49970  0.84461     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     13   3.47984  0.12477  3.52729  2.86289     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     14   1.95486  0.41962  2.53145  2.10723     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     15   2.11863  2.15518  1.09102  0.84852     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     16   3.47984  0.12477  3.52729  2.86289     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     17   3.47984  0.12477  3.52729  2.86289     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     18   3.47984  0.12477  3.52729  2.86289     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     19   2.52351  3.40230  0.16305  3.29746     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     20   0.13665  3.42087  2.82823  3.32641     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     21   2.97564  3.62879  0.11277  3.53776     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     22   2.97564  3.62879  0.11277  3.53776     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     23   2.97564  3.62879  0.11277  3.53776     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     24   3.47984  0.12477  3.52729  2.86289     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     25   0.13665  3.42087  2.82823  3.32641     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     26   3.47984  0.12477  3.52729  2.86289     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     27   2.97564  3.62879  0.11277  3.53776     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     28   3.47984  0.12477  3.52729  2.86289     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     29   3.47984  0.12477  3.52729  2.86289     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     30   3.12979  2.62130  3.17636  0.17218     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     31   2.97564  3.62879  0.11277  3.53776     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     32   3.47984  0.12477  3.52729  2.86289     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     33   3.47984  0.12477  3.52729  2.86289     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     34   3.12979  2.62130  3.17636  0.17218     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     35   2.97564  3.62879  0.11277  3.53776     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     36   2.97564  3.62879  0.11277  3.53776     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     37   2.97564  3.62879  0.11277  3.53776     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     38   3.47984  0.12477  3.52729  2.86289     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     39   2.97564  3.62879  0.11277  3.53776     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     40   3.12979  2.62130  3.17636  0.17218     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     41   2.37199  2.46336  2.81060  0.27261     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     42   0.13665  3.42087  2.82823  3.32641     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     43   2.97564  3.62879  0.11277  3.53776     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     44   0.13665  3.42087  2.82823  3.32641     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03464  4.03464  1.46634  0.26236  1.09861  0.40547
+     45   0.13665  3.42087  2.82823  3.32641     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01817  4.01679        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_thirtyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:11:30 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 526989836
+STATS LOCAL MSV       -7.9616  0.72013
+STATS LOCAL VITERBI   -7.8039  0.72013
+STATS LOCAL FORWARD   -4.0636  0.72013
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63091  1.26577  1.25759  1.43595
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.97980  2.52563  3.03204  0.19727      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.97980  2.52563  3.03204  0.19727     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_thirtyfoura_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:11:05 2012
+NSEQ  31
+EFFN  3.576050
+CKSUM 1110488480
+STATS LOCAL MSV       -7.3906  0.71932
+STATS LOCAL VITERBI   -7.7243  0.71932
+STATS LOCAL FORWARD   -4.1047  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73194  1.44969  1.07683  1.39536
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  0.00000        *
+      1   3.00104  3.66608  0.10894  3.57903      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+      2   3.52251  0.12003  3.56809  2.89364      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+      3   0.41720  2.55354  2.39138  1.76141      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+      4   3.52251  0.12003  3.56809  2.89364      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+      5   3.00104  3.66608  0.10894  3.57903      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+      6   0.13204  3.45806  2.85223  3.36719      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+      7   3.00104  3.66608  0.10894  3.57903      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+      8   3.00104  3.66608  0.10894  3.57903      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+      9   3.52251  0.12003  3.56809  2.89364      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     10   3.52251  0.12003  3.56809  2.89364     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     11   0.13204  3.45806  2.85223  3.36719     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     12   3.16784  2.64544  3.21293  0.16642     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     13   3.16784  2.64544  3.21293  0.16642     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     14   0.13204  3.45806  2.85223  3.36719     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     15   3.00104  3.66608  0.10894  3.57903     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     16   3.00104  3.66608  0.10894  3.57903     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     17   3.04861  2.35479  3.09836  0.20759     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     18   3.52251  0.12003  3.56809  2.89364     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     19   2.53822  3.43935  0.15855  3.33746     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     20   0.13204  3.45806  2.85223  3.36719     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     21   3.00104  3.66608  0.10894  3.57903     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     22   1.82346  2.21809  2.09443  0.49992     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     23   3.00104  3.66608  0.10894  3.57903     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     24   3.52251  0.12003  3.56809  2.89364     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     25   0.13204  3.45806  2.85223  3.36719     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     26   3.28078  0.17413  3.33457  2.44665     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     27   3.00104  3.66608  0.10894  3.57903     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     28   3.16784  2.64544  3.21293  0.16642     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     29   3.52251  0.12003  3.56809  2.89364     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     30   3.16784  2.64544  3.21293  0.16642     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     31   3.00104  3.66608  0.10894  3.57903     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     32   3.04861  2.35479  3.09836  0.20759     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     33   3.16784  2.64544  3.21293  0.16642     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     34   3.16784  2.64544  3.21293  0.16642     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     35   3.00104  3.66608  0.10894  3.57903     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     36   3.00104  3.66608  0.10894  3.57903     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     37   3.00104  3.66608  0.10894  3.57903     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     38   3.28078  0.17413  3.33457  2.44665     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     39   3.00104  3.66608  0.10894  3.57903     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     40   3.16784  2.64544  3.21293  0.16642     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     41   3.52251  0.12003  3.56809  2.89364     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     42   0.13204  3.45806  2.85223  3.36719     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     43   3.16784  2.64544  3.21293  0.16642     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     44   3.00104  3.66608  0.10894  3.57903     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03524  4.05630  4.05630  1.46634  0.26236  1.09861  0.40547
+     45   2.75448  1.75873  2.81555  0.35066     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01777  4.03884        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_thirtyfourb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:11:12 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3980991935
+STATS LOCAL MSV       -7.5533  0.72716
+STATS LOCAL VITERBI   -8.1522  0.72716
+STATS LOCAL FORWARD   -3.3295  0.72716
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.59501  1.20164  1.16801  1.68520
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_thirtyfourc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:11:18 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2098883129
+STATS LOCAL MSV       -7.5674  0.72732
+STATS LOCAL VITERBI   -8.2900  0.72732
+STATS LOCAL FORWARD   -3.4224  0.72732
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.58991  1.35237  1.11830  1.55782
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_thirtyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:09:07 2012
+NSEQ  173
+EFFN  3.861984
+CKSUM 63343949
+STATS LOCAL MSV       -7.1647  0.71933
+STATS LOCAL VITERBI   -7.8521  0.71933
+STATS LOCAL FORWARD   -3.4105  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.98184  1.01410  1.02688  1.95663
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  0.00000        *
+      1   3.05490  3.74564  0.10125  3.66724      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+      2   3.61417  0.11054  3.65561  2.95909      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+      3   3.55107  0.12280  3.59487  2.82348      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+      4   3.51251  0.13063  3.55781  2.74676      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+      5   3.05490  3.74564  0.10125  3.66724      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+      6   0.12267  3.53838  2.90385  3.45540      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+      7   3.05490  3.74564  0.10125  3.66724      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+      8   2.65459  3.36410  0.16732  3.01286      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+      9   3.53248  0.12654  3.57701  2.78601      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     10   3.55272  0.12247  3.59646  2.82687     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     11   0.57727  2.28575  2.27808  1.45075     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     12   2.53138  1.12398  2.60080  0.65152     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     13   2.57887  1.26595  2.64667  0.55987     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     14   2.41793  0.66381  2.38111  1.19218     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     15   3.05490  3.74564  0.10125  3.66724     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     16   3.05490  3.74564  0.10125  3.66724     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     17   2.99017  0.28407  3.05277  1.89859     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     18   2.95520  0.29957  3.01868  1.84559     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     19   2.88765  3.67807  0.11477  3.59523     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     20   0.12267  3.53838  2.90385  3.45540     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     21   3.05490  3.74564  0.10125  3.66724     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     22   3.05490  3.74564  0.10125  3.66724     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     23   3.05490  3.74564  0.10125  3.66724     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     24   3.61417  0.11054  3.65561  2.95909     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     25   0.12267  3.53838  2.90385  3.45540     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     26   3.55229  0.12255  3.59605  2.82599     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     27   3.05490  3.74564  0.10125  3.66724     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     28   3.09504  0.24308  3.15479  2.05671     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     29   3.61417  0.11054  3.65561  2.95909     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     30   3.20860  2.58338  3.25216  0.16797     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     31   3.00222  3.63096  0.11692  3.37623     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     32   3.61417  0.11054  3.65561  2.95909     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     33   3.51186  0.13076  3.55719  2.74552     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     34   3.25118  2.69828  3.29301  0.15454     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     35   3.05490  3.74564  0.10125  3.66724     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     36   3.05490  3.74564  0.10125  3.66724     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     37   3.05490  3.74564  0.10125  3.66724     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     38   3.54985  0.12304  3.59370  2.82100     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     39   3.05490  3.74564  0.10125  3.66724     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     40   3.25118  2.69828  3.29301  0.15454     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     41   3.61417  0.11054  3.65561  2.95909     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     42   0.12267  3.53838  2.90385  3.45540     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     43   3.61417  0.11054  3.65561  2.95909     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     44   3.05490  3.74564  0.10125  3.66724     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03355  4.10462  4.10462  1.46634  0.26236  1.09861  0.40547
+     45   3.61417  0.11054  3.65561  2.95909     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01692  4.08799        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_thirtyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:11:43 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 52418213
+STATS LOCAL MSV       -7.4325  0.72761
+STATS LOCAL VITERBI   -8.1937  0.72761
+STATS LOCAL FORWARD   -3.7303  0.72761
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66301  1.34714  1.16496  1.43333
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.53331  3.02441  0.20344  2.88069      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.81865  0.23582  2.88868  2.35662      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.57915  2.25909  2.64442  0.28946     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.57915  2.25909  2.64442  0.28946     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_thirtythreea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:09:29 2012
+NSEQ  18
+EFFN  3.783691
+CKSUM 550039999
+STATS LOCAL MSV       -6.9143  0.71933
+STATS LOCAL VITERBI   -7.6760  0.71933
+STATS LOCAL FORWARD   -3.7559  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.04129  1.19714  1.03285  1.55075
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  0.00000        *
+      1   3.04077  3.72472  0.10321  3.64403      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+      2   3.58999  0.11296  3.63254  2.94190      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+      3   3.58999  0.11296  3.63254  2.94190      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+      4   2.62908  1.41927  2.69499  0.48058      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+      5   3.04077  3.72472  0.10321  3.64403      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+      6   0.12508  3.51713  2.89021  3.43205      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+      7   3.04077  3.72472  0.10321  3.64403      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+      8   3.04077  3.72472  0.10321  3.64403      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+      9   3.58999  0.11296  3.63254  2.94190      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     10   3.58999  0.11296  3.63254  2.94190     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     11   3.22897  2.68419  3.27168  0.15761     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.18717  4.09162  1.87089  1.46634  0.26236  1.09861  0.40547
+     12   2.37027  0.74634  2.44366  1.06246     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03951  3.94396  3.94396  1.46634  0.26236  0.19644  1.72402
+     13   2.90813  1.96059  2.96416  0.28363     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     14   3.22897  2.68419  3.27168  0.15761     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     15   3.04077  3.72472  0.10321  3.64403     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     16   3.04077  3.72472  0.10321  3.64403     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     17   2.90813  1.96059  2.96416  0.28363     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     18   2.48587  0.87739  2.55718  0.85954     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     19   3.04077  3.72472  0.10321  3.64403     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     20   0.12508  3.51713  2.89021  3.43205     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     21   1.83922  3.03603  0.30309  2.90955     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     22   3.04077  3.72472  0.10321  3.64403     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     23   3.04077  3.72472  0.10321  3.64403     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     24   3.58999  0.11296  3.63254  2.94190     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     25   0.12508  3.51713  2.89021  3.43205     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     26   3.58999  0.11296  3.63254  2.94190     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     27   3.04077  3.72472  0.10321  3.64403     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     28   3.22897  2.68419  3.27168  0.15761     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     29   3.58999  0.11296  3.63254  2.94190     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     30   3.22897  2.68419  3.27168  0.15761     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     31   3.04077  3.72472  0.10321  3.64403     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     32   3.58999  0.11296  3.63254  2.94190     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     33   3.07424  0.24642  3.13451  2.05058     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     34   3.22897  2.68419  3.27168  0.15761     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     35   3.04077  3.72472  0.10321  3.64403     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     36   3.04077  3.72472  0.10321  3.64403     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     37   3.04077  3.72472  0.10321  3.64403     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     38   3.58999  0.11296  3.63254  2.94190     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     39   3.04077  3.72472  0.10321  3.64403     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     40   3.22897  2.68419  3.27168  0.15761     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     41   3.58999  0.11296  3.63254  2.94190     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     42   0.12508  3.51713  2.89021  3.43205     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     43   3.58999  0.11296  3.63254  2.94190     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     44   3.04077  3.72472  0.10321  3.64403     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03400  4.09162  4.09162  1.46634  0.26236  1.09861  0.40547
+     45   3.14070  0.22357  3.19904  2.15167     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01714  4.07477        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_thirtythreeb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:09:37 2012
+NSEQ  11
+EFFN  3.112549
+CKSUM 3927138524
+STATS LOCAL MSV       -8.3070  0.71933
+STATS LOCAL VITERBI   -7.8443  0.71933
+STATS LOCAL FORWARD   -3.5924  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.85214  1.06036  1.04445  1.93184
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97266  3.97266  1.46634  0.26236  0.00000        *
+      1   2.89827  3.51656  0.12526  3.41398      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
+      2   3.35264  0.14023  3.40543  2.77003      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03837  3.97266  3.97266  1.46634  0.26236  1.09861  0.40547
+      3   3.35264  0.14023  3.40543  2.77003      3 - -
+          1.38629  1.38629  1.38629  1.38629
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+     42   0.15146  3.31057  2.75641  3.20573     42 - -
+          1.38629  1.38629  1.38629  1.38629
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+     43   3.35264  0.14023  3.40543  2.77003     43 - -
+          1.38629  1.38629  1.38629  1.38629
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+     44   2.89827  3.51656  0.12526  3.41398     44 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   3.35264  0.14023  3.40543  2.77003     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01937  3.95365        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_thirtythreec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:10:01 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2397806016
+STATS LOCAL MSV       -7.4839  0.72750
+STATS LOCAL VITERBI   -8.2729  0.72750
+STATS LOCAL FORWARD   -3.2715  0.72750
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66442  1.29311  1.16721  1.49143
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
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+      2   2.81865  0.23582  2.88868  2.35662      2 - -
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+      3   2.81865  0.23582  2.88868  2.35662      3 - -
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+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_thirtythreed_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:10:10 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 344474445
+STATS LOCAL MSV       -7.3987  0.72853
+STATS LOCAL VITERBI   -8.1953  0.72853
+STATS LOCAL FORWARD   -3.3486  0.72853
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.58413  1.25576  1.21039  1.55149
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.15554  1.00938  2.23102  0.88601     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.15554  1.00938  2.23102  0.88601     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_thirtythreee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:10:27 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3848995925
+STATS LOCAL MSV       -7.4459  0.72796
+STATS LOCAL VITERBI   -8.2472  0.72796
+STATS LOCAL FORWARD   -3.2509  0.72796
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.56353  1.28022  1.16180  1.61092
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.53331  3.02441  0.20344  2.88069      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   1.01448  1.11006  1.95471  1.79419     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_thirtythreef_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:10:35 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2055483089
+STATS LOCAL MSV       -7.5686  0.72740
+STATS LOCAL VITERBI   -8.0498  0.72740
+STATS LOCAL FORWARD   -3.3915  0.72740
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.52192  1.35165  1.16450  1.55678
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.53331  3.02441  0.20344  2.88069     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_thirtytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:09:18 2012
+NSEQ  17
+EFFN  3.357666
+CKSUM 685826610
+STATS LOCAL MSV       -8.2223  0.71932
+STATS LOCAL VITERBI   -7.8316  0.71932
+STATS LOCAL FORWARD   -4.1028  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.73227  1.24820  1.13451  1.53936
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  0.00000        *
+      1   2.95528  3.59904  0.11593  3.50489      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+      2   3.44594  0.12869  3.49485  2.83833      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+      3   3.44594  0.12869  3.49485  2.83833      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+      4   3.44594  0.12869  3.49485  2.83833      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+      5   2.95528  3.59904  0.11593  3.50489      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+      6   0.14043  3.39140  2.80915  3.29412      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+      7   2.95528  3.59904  0.11593  3.50489      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+      8   2.95528  3.59904  0.11593  3.50489      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+      9   3.44594  0.12869  3.49485  2.83833      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     10   3.44594  0.12869  3.49485  2.83833     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     11   3.09986  2.60230  3.14759  0.17687     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     12   3.09986  2.60230  3.14759  0.17687     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     13   2.55050  1.44909  2.61765  0.48744     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     14   3.19210  0.18897  3.24878  2.38295     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     15   2.95528  3.59904  0.11593  3.50489     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     16   2.95528  3.59904  0.11593  3.50489     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     17   3.09986  2.60230  3.14759  0.17687     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     18   3.44594  0.12869  3.49485  2.83833     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     19   2.95528  3.59904  0.11593  3.50489     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     20   0.14043  3.39140  2.80915  3.29412     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     21   2.95528  3.59904  0.11593  3.50489     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     22   2.95528  3.59904  0.11593  3.50489     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     23   2.95528  3.59904  0.11593  3.50489     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     24   3.44594  0.12869  3.49485  2.83833     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     25   0.14043  3.39140  2.80915  3.29412     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     26   3.44594  0.12869  3.49485  2.83833     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     27   0.14043  3.39140  2.80915  3.29412     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     28   3.09986  2.60230  3.14759  0.17687     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     29   3.44594  0.12869  3.49485  2.83833     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     30   3.09986  2.60230  3.14759  0.17687     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     31   2.95528  3.59904  0.11593  3.50489     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     32   3.44594  0.12869  3.49485  2.83833     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     33   3.09986  2.60230  3.14759  0.17687     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     34   3.09986  2.60230  3.14759  0.17687     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     35   2.95528  3.59904  0.11593  3.50489     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     36   2.95528  3.59904  0.11593  3.50489     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     37   2.95528  3.59904  0.11593  3.50489     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     38   3.44594  0.12869  3.49485  2.83833     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     39   2.95528  3.59904  0.11593  3.50489     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     40   3.09986  2.60230  3.14759  0.17687     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     41   2.71645  1.78494  2.77818  0.35107     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     42   0.24390  3.06038  2.14653  2.94357     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     43   0.14043  3.39140  2.80915  3.29412     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     44   0.14043  3.39140  2.80915  3.29412     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03665  4.01776  4.01776  1.46634  0.26236  1.09861  0.40547
+     45   3.44594  0.12869  3.49485  2.83833     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01849  3.99961        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:55:32 2012
+NSEQ  13
+EFFN  3.081787
+CKSUM 3827031248
+STATS LOCAL MSV       -8.2836  0.71932
+STATS LOCAL VITERBI   -7.6501  0.71932
+STATS LOCAL FORWARD   -3.8247  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82182  1.10900  1.09622  1.74728
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  0.00000        *
+      1   2.89064  3.50563  0.12656  3.40196      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+      2   3.34036  0.14184  3.39364  2.76096      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+      3   3.34036  0.14184  3.39364  2.76096      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+      4   3.34036  0.14184  3.39364  2.76096      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+      5   2.89064  3.50563  0.12656  3.40196      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+      6   0.15298  3.29995  2.74942  3.19413      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+      7   0.15298  3.29995  2.74942  3.19413      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+      8   2.89064  3.50563  0.12656  3.40196      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+      9   3.34036  0.14184  3.39364  2.76096      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     10   3.34036  0.14184  3.39364  2.76096     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     11   3.00825  2.54387  3.05944  0.19219     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     12   3.34036  0.14184  3.39364  2.76096     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     13   3.00825  2.54387  3.05944  0.19219     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     14   0.15298  3.29995  2.74942  3.19413     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     15   2.89064  3.50563  0.12656  3.40196     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     16   2.89064  3.50563  0.12656  3.40196     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     17   3.34036  0.14184  3.39364  2.76096     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     18   3.00825  2.54387  3.05944  0.19219     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     19   2.89064  3.50563  0.12656  3.40196     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     20   0.15298  3.29995  2.74942  3.19413     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     21   2.89064  3.50563  0.12656  3.40196     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     22   2.89064  3.50563  0.12656  3.40196     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     23   2.89064  3.50563  0.12656  3.40196     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     24   3.34036  0.14184  3.39364  2.76096     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     25   0.15298  3.29995  2.74942  3.19413     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     26   3.34036  0.14184  3.39364  2.76096     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     27   2.89064  3.50563  0.12656  3.40196     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     28   3.00825  2.54387  3.05944  0.19219     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     29   3.34036  0.14184  3.39364  2.76096     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     30   3.00825  2.54387  3.05944  0.19219     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     31   2.89064  3.50563  0.12656  3.40196     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     32   3.34036  0.14184  3.39364  2.76096     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     33   3.34036  0.14184  3.39364  2.76096     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     34   3.00825  2.54387  3.05944  0.19219     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     35   2.89064  3.50563  0.12656  3.40196     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     36   2.89064  3.50563  0.12656  3.40196     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     37   2.89064  3.50563  0.12656  3.40196     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     38   3.34036  0.14184  3.39364  2.76096     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     39   2.89064  3.50563  0.12656  3.40196     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     40   3.00825  2.54387  3.05944  0.19219     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     41   3.34036  0.14184  3.39364  2.76096     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     42   0.15298  3.29995  2.74942  3.19413     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     43   3.34036  0.14184  3.39364  2.76096     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     44   2.89064  3.50563  0.12656  3.40196     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03860  3.96685  3.96685  1.46634  0.26236  1.09861  0.40547
+     45   3.34036  0.14184  3.39364  2.76096     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01949  3.94774        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twelve_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:57:55 2012
+NSEQ  23
+EFFN  3.697632
+CKSUM 3343583042
+STATS LOCAL MSV       -7.2508  0.71933
+STATS LOCAL VITERBI   -7.6026  0.71933
+STATS LOCAL FORWARD   -3.9055  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.75713  1.13224  1.13965  1.68621
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  0.00000        *
+      1   3.02472  3.70099  0.10549  3.61771      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+      2   3.56263  0.11577  3.60642  2.92238      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+      3   3.56263  0.11577  3.60642  2.92238      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+      4   3.56263  0.11577  3.60642  2.92238      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+      5   3.02472  3.70099  0.10549  3.61771      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+      6   0.12785  3.49313  2.87479  3.40569      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+      7   0.12785  3.49313  2.87479  3.40569      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+      8   3.02472  3.70099  0.10549  3.61771      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+      9   3.56263  0.11577  3.60642  2.92238      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     10   3.56263  0.11577  3.60642  2.92238     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     11   0.65686  2.30315  2.24844  1.28730     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     12   3.20403  2.66838  3.24772  0.16114     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     13   3.02224  0.26115  3.08388  1.99983     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     14   2.89152  0.31846  2.95642  1.80037     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     15   3.02472  3.70099  0.10549  3.61771     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     16   3.02472  3.70099  0.10549  3.61771     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     17   2.58153  1.35406  2.64872  0.51850     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     18   2.95974  2.10353  3.01346  0.25229     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     19   1.88853  3.05068  0.29074  2.92499     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     20   0.12785  3.49313  2.87479  3.40569     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     21   3.02472  3.70099  0.10549  3.61771     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     22   3.02472  3.70099  0.10549  3.61771     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     23   3.02472  3.70099  0.10549  3.61771     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     24   3.56263  0.11577  3.60642  2.92238     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     25   0.12785  3.49313  2.87479  3.40569     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     26   2.58153  1.35406  2.64872  0.51850     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     27   3.02472  3.70099  0.10549  3.61771     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     28   3.20403  2.66838  3.24772  0.16114     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     29   3.56263  0.11577  3.60642  2.92238     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     30   3.20403  2.66838  3.24772  0.16114     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     31   3.02472  3.70099  0.10549  3.61771     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     32   3.56263  0.11577  3.60642  2.92238     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     33   3.56263  0.11577  3.60642  2.92238     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     34   3.20403  2.66838  3.24772  0.16114     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     35   3.02472  3.70099  0.10549  3.61771     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     36   3.02472  3.70099  0.10549  3.61771     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     37   3.02472  3.70099  0.10549  3.61771     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     38   3.56263  0.11577  3.60642  2.92238     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     39   3.02472  3.70099  0.10549  3.61771     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     40   3.20403  2.66838  3.24772  0.16114     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     41   3.56263  0.11577  3.60642  2.92238     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     42   0.12785  3.49313  2.87479  3.40569     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     43   3.56263  0.11577  3.60642  2.92238     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     44   0.12785  3.49313  2.87479  3.40569     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03450  4.07714  4.07714  1.46634  0.26236  1.09861  0.40547
+     45   3.56263  0.11577  3.60642  2.92238     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01740  4.06003        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentya_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:03:14 2012
+NSEQ  6
+EFFN  3.178711
+CKSUM 3928551301
+STATS LOCAL MSV       -8.3552  0.71933
+STATS LOCAL VITERBI   -7.9466  0.71933
+STATS LOCAL FORWARD   -3.4318  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92867  1.00410  1.04349  1.99465
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  0.00000        *
+      1   2.91430  3.53962  0.12257  3.43936      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      2   3.37862  0.13690  3.43035  2.78916      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      3   3.37862  0.13690  3.43035  2.78916      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      4   3.37862  0.13690  3.43035  2.78916      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      5   2.37921  0.95205  2.45172  0.83176      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      6   0.14829  3.33304  2.77114  3.23028      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      7   2.91430  3.53962  0.12257  3.43936      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      8   2.91430  3.53962  0.12257  3.43936      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+      9   3.37862  0.13690  3.43035  2.78916      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     10   3.37862  0.13690  3.43035  2.78916     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     11   2.91430  3.53962  0.12257  3.43936     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     12   3.04119  2.56493  3.09115  0.18651     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     13   3.37862  0.13690  3.43035  2.78916     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     14   0.14829  3.33304  2.77114  3.23028     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     15   2.91430  3.53962  0.12257  3.43936     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     16   2.91430  3.53962  0.12257  3.43936     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     17   2.79199  0.32979  2.85893  1.81835     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     18   3.37862  0.13690  3.43035  2.78916     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     19   2.91430  3.53962  0.12257  3.43936     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     20   0.14829  3.33304  2.77114  3.23028     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     21   2.91430  3.53962  0.12257  3.43936     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     22   2.91430  3.53962  0.12257  3.43936     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     23   2.91430  3.53962  0.12257  3.43936     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     24   3.37862  0.13690  3.43035  2.78916     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     25   0.14829  3.33304  2.77114  3.23028     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     26   3.37862  0.13690  3.43035  2.78916     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     27   2.91430  3.53962  0.12257  3.43936     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     28   3.37862  0.13690  3.43035  2.78916     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     29   3.37862  0.13690  3.43035  2.78916     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     30   3.04119  2.56493  3.09115  0.18651     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     31   2.91430  3.53962  0.12257  3.43936     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     32   3.37862  0.13690  3.43035  2.78916     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     33   3.37862  0.13690  3.43035  2.78916     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     34   3.04119  2.56493  3.09115  0.18651     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     35   2.91430  3.53962  0.12257  3.43936     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     36   2.91430  3.53962  0.12257  3.43936     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     37   2.91430  3.53962  0.12257  3.43936     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     38   3.37862  0.13690  3.43035  2.78916     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     39   2.91430  3.53962  0.12257  3.43936     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     40   3.04119  2.56493  3.09115  0.18651     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     41   3.37862  0.13690  3.43035  2.78916     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     42   0.14829  3.33304  2.77114  3.23028     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     43   3.37862  0.13690  3.43035  2.78916     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     44   2.91430  3.53962  0.12257  3.43936     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
+     45   3.37862  0.13690  3.43035  2.78916     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01913  3.96627        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentyb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:03:24 2012
+NSEQ  331
+EFFN  4.139015
+CKSUM 3119287144
+STATS LOCAL MSV       -6.8068  0.71933
+STATS LOCAL VITERBI   -7.6332  0.71933
+STATS LOCAL FORWARD   -3.8434  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.88004  1.11445  1.11094  1.66036
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  0.00000        *
+      1   2.98484  3.77251  0.10347  3.69876      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+      2   3.58373  0.11709  3.47125  2.96333      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+      3   3.60558  0.11989  3.64702  2.81772      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+      4   3.59530  0.12193  3.63718  2.79664      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+      5   2.51204  3.44490  0.16604  3.21952      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+      6   0.11500  3.60943  2.94947  3.53352      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+      7   0.11500  3.60943  2.94947  3.53352      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+      8   2.97178  3.76747  0.10449  3.69331      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+      9   3.63724  0.11371  3.67733  2.88474      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     10   3.69453  0.10292  3.73224  3.01595     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     11   1.34835  2.18781  2.05143  0.69391     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     12   3.28125  2.61853  3.32212  0.15849     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     13   2.71505  1.44191  2.77923  0.45376     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     14   2.29898  0.84042  2.15999  1.04191     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     15   3.10155  3.81486  0.09505  3.74413     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     16   3.10155  3.81486  0.09505  3.74413     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     17   3.41770  0.16079  3.46689  2.47072     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     18   2.86277  0.19468  3.07992  2.60603     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     19   1.99349  3.21682  0.25020  3.09992     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     20   0.11500  3.60943  2.94947  3.53352     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     21   3.10155  3.81486  0.09505  3.74413     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     22   3.10155  3.81486  0.09505  3.74413     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     23   3.10155  3.81486  0.09505  3.74413     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     24   3.69453  0.10292  3.73224  3.01595     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     25   0.11500  3.60943  2.94947  3.53352     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     26   3.69453  0.10292  3.73224  3.01595     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     27   3.10155  3.81486  0.09505  3.74413     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     28   3.15346  2.30352  3.20031  0.20256     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     29   3.06185  0.27103  3.12281  1.92022     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     30   3.32628  2.74598  3.36515  0.14464     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     31   3.10155  3.81486  0.09505  3.74413     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     32   3.69453  0.10292  3.73224  3.01595     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     33   3.69453  0.10292  3.73224  3.01595     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     34   3.32628  2.74598  3.36515  0.14464     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     35   3.10155  3.81486  0.09505  3.74413     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     36   3.10155  3.81486  0.09505  3.74413     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     37   3.10155  3.81486  0.09505  3.74413     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     38   3.28884  2.63924  3.32935  0.15610     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     39   3.10155  3.81486  0.09505  3.74413     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     40   3.32628  2.74598  3.36515  0.14464     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     41   3.69453  0.10292  3.73224  3.01595     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     42   0.11500  3.60943  2.94947  3.53352     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     43   3.55874  0.12936  3.60218  2.72411     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     44   1.65203  2.17464  0.87123  1.28643     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03206  4.14931  4.14931  1.46634  0.26236  1.09861  0.40547
+     45   3.62344  0.11638  3.66411  2.85511     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01616  4.13341        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:08:23 2012
+NSEQ  75
+EFFN  3.941345
+CKSUM 725606151
+STATS LOCAL MSV       -7.0112  0.71932
+STATS LOCAL VITERBI   -7.6002  0.71932
+STATS LOCAL FORWARD   -3.6299  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.99178  1.05713  1.03677  1.82326
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  0.00000        *
+      1   3.06877  3.76621  0.09936  3.69008      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+      2   3.63800  0.10822  3.67835  2.97600      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+      3   3.63800  0.10822  3.67835  2.97600      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+      4   3.63800  0.10822  3.67835  2.97600      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+      5   2.74031  3.44624  0.15224  3.10552      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+      6   1.96078  3.15215  0.26363  3.03173      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+      7   0.13630  3.49554  2.74789  3.41053      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+      8   3.06877  3.76621  0.09936  3.69008      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+      9   3.63800  0.10822  3.67835  2.97600      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     10   3.63800  0.10822  3.67835  2.97600     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     11   1.38932  2.16314  2.00609  0.69060     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.10050  4.11763  2.53411  1.46634  0.26236  1.09861  0.40547
+     12   3.06519  2.40438  3.11421  0.20014     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03538  4.05250  4.05250  1.46634  0.26236  0.34394  1.23432
+     13   2.10122  0.84967  1.59245  1.39955     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     14   1.70851  1.97438  2.39563  0.52950     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     15   3.06877  3.76621  0.09936  3.69008     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     16   2.76288  2.58563  0.20594  3.04372     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     17   3.63800  0.10822  3.67835  2.97600     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     18   3.63800  0.10822  3.67835  2.97600     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     19   3.06877  3.76621  0.09936  3.69008     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     20   0.12035  3.55938  2.91733  3.47849     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     21   2.97532  3.27524  0.12788  3.46721     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     22   3.06877  3.76621  0.09936  3.69008     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     23   3.06877  3.76621  0.09936  3.69008     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     24   3.63800  0.10822  3.67835  2.97600     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     25   0.12035  3.55938  2.91733  3.47849     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     26   3.63800  0.10822  3.67835  2.97600     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     27   3.06877  3.76621  0.09936  3.69008     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     28   2.95522  1.98156  3.00992  0.27341     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     29   3.63800  0.10822  3.67835  2.97600     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     30   3.27324  2.71227  3.31420  0.15156     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     31   3.06877  3.76621  0.09936  3.69008     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     32   3.63800  0.10822  3.67835  2.97600     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     33   3.26436  0.19316  3.31889  2.29033     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     34   3.27324  2.71227  3.31420  0.15156     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     35   3.06877  3.76621  0.09936  3.69008     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     36   3.06877  3.76621  0.09936  3.69008     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     37   3.06877  3.76621  0.09936  3.69008     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     38   2.71123  0.21164  3.12806  2.51972     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     39   3.06877  3.76621  0.09936  3.69008     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     40   3.27324  2.71227  3.31420  0.15156     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     41   3.63800  0.10822  3.67835  2.97600     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     42   0.12035  3.55938  2.91733  3.47849     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     43   3.63800  0.10822  3.67835  2.97600     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     44   2.08904  3.23944  0.23189  3.12420     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03311  4.11763  4.11763  1.46634  0.26236  1.09861  0.40547
+     45   3.63800  0.10822  3.67835  2.97600     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01669  4.10121        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:07:40 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3506156002
+STATS LOCAL MSV       -7.5008  0.72748
+STATS LOCAL VITERBI   -8.1864  0.72748
+STATS LOCAL FORWARD   -3.4958  0.72748
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.52125  1.29579  1.21643  1.55308
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.57915  2.25909  2.64442  0.28946     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.57915  2.25909  2.64442  0.28946     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:07:23 2012
+NSEQ  54
+EFFN  4.030884
+CKSUM 1457287590
+STATS LOCAL MSV       -7.1491  0.71932
+STATS LOCAL VITERBI   -7.6747  0.71932
+STATS LOCAL FORWARD   -3.4488  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.04535  1.11942  0.98371  1.77033
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  0.00000        *
+      1   3.08392  3.78870  0.09735  3.71506      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+      2   3.45031  0.14947  3.49811  2.56596      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+      3   3.08392  3.78870  0.09735  3.71506      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+      4   3.66410  0.10573  3.70323  2.99446      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+      5   3.66410  0.10573  3.70323  2.99446      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+      6   3.66410  0.10573  3.70323  2.99446      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+      7   3.08392  3.78870  0.09735  3.71506      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+      8   0.13796  3.50238  2.71853  3.41818      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+      9   3.08392  3.78870  0.09735  3.71506      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     10   3.08392  3.78870  0.09735  3.71506     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     11   3.66410  0.10573  3.70323  2.99446     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     12   2.52879  0.85000  2.59963  0.87101     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     13   3.22583  2.53318  3.26898  0.17099     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     14   2.92148  0.32796  2.98592  1.74147     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     15   3.08392  3.78870  0.09735  3.71506     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     16   3.08392  3.78870  0.09735  3.71506     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     17   3.38134  0.16580  3.43180  2.44814     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     18   3.33523  0.17750  3.38738  2.37261     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     19   1.64990  2.96161  0.36060  2.83134     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     20   0.11785  3.58244  2.93213  3.50384     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     21   3.08392  3.78870  0.09735  3.71506     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     22   3.08392  3.78870  0.09735  3.71506     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     23   3.08392  3.78870  0.09735  3.71506     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     24   3.66410  0.10573  3.70323  2.99446     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     25   0.11785  3.58244  2.93213  3.50384     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     26   3.66410  0.10573  3.70323  2.99446     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     27   2.99000  3.28184  0.12599  3.48914     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     28   3.03317  2.09684  3.08495  0.24429     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     29   3.51507  0.13525  3.56027  2.68353     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     30   3.29760  2.72774  3.33760  0.14834     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     31   3.08392  3.78870  0.09735  3.71506     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     32   3.38134  0.16580  3.43180  2.44814     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     33   2.71137  1.47995  2.77533  0.44071     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     34   3.29760  2.72774  3.33760  0.14834     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     35   3.08392  3.78870  0.09735  3.71506     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     36   3.08392  3.78870  0.09735  3.71506     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     37   3.08392  3.78870  0.09735  3.71506     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     38   3.03328  0.27630  3.09490  1.91071     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     39   3.08392  3.78870  0.09735  3.71506     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     40   3.29760  2.72774  3.33760  0.14834     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     41   3.66410  0.10573  3.70323  2.99446     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     42   3.08392  3.78870  0.09735  3.71506     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     43   2.77698  0.33436  2.64739  1.88956     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     44   0.11785  3.58244  2.93213  3.50384     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03262  4.13210  4.13210  1.46634  0.26236  1.09861  0.40547
+     45   2.61157  0.59203  2.68190  1.18763     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01645  4.11592        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:08:34 2012
+NSEQ  75
+EFFN  3.520203
+CKSUM 4214802283
+STATS LOCAL MSV       -7.3205  0.71933
+STATS LOCAL VITERBI   -7.8616  0.71933
+STATS LOCAL FORWARD   -3.4501  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.61407  1.13672  1.12900  1.85344
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04659  4.04659  1.46634  0.26236  0.00000        *
+      1   3.50349  0.12212  3.54991  2.87996      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
+      2   3.50349  0.12212  3.54991  2.87996      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
+      3   2.73573  3.53280  0.13493  3.43720      3 - -
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+     42   0.13407  3.44147  2.84153  3.34899     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
+     43   2.98975  3.64948  0.11062  3.56065     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
+     44   0.13407  3.44147  2.84153  3.34899     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03559  4.04659  4.04659  1.46634  0.26236  1.09861  0.40547
+     45   0.13407  3.44147  2.84153  3.34899     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01795  4.02895        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentyone_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:03:41 2012
+NSEQ  599
+EFFN  5.927299
+CKSUM 1282541197
+STATS LOCAL MSV       -6.8074  0.71932
+STATS LOCAL VITERBI   -7.4983  0.71932
+STATS LOCAL FORWARD   -3.9068  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.84517  1.10322  1.09393  1.74124
+          1.38629  1.38629  1.38629  1.38629
+          0.02492  4.39781  4.39781  1.46634  0.26236  0.00000        *
+      1   3.11256  4.08891  0.08199  4.04723      1 - -
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+      2   3.81774  0.11010  3.52105  2.94300      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
+      3   3.98691  0.09021  4.01203  3.00368      3 - -
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+      4   3.38589  0.15019  3.66582  2.52544      4 - -
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+      5   2.03947  2.89434  0.32975  2.34900      5 - -
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+      6   0.09766  3.90429  2.96151  3.85617      6 - -
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+      7   0.33071  2.80869  1.87991  2.67802      7 - -
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+          1.38629  1.38629  1.38629  1.38629
+          0.02492  4.39781  4.39781  1.46634  0.26236  1.09861  0.40547
+     45   3.37898  0.16398  3.61810  2.40435     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01254  4.38543        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentysevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:07:57 2012
+NSEQ  16
+EFFN  3.308594
+CKSUM 3310407156
+STATS LOCAL MSV       -8.2848  0.71933
+STATS LOCAL VITERBI   -7.9184  0.71933
+STATS LOCAL FORWARD   -3.7813  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.17979  1.20305  1.04053  1.45504
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  0.00000        *
+      1   3.42790  0.13083  3.47758  2.82520      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+      2   2.94437  3.58317  0.11766  3.48736      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+      3   3.42790  0.13083  3.47758  2.82520      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+      4   3.08405  2.59224  3.13238  0.17941      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+      5   3.42790  0.13083  3.47758  2.82520      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+      6   2.94437  3.58317  0.11766  3.48736      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+      7   0.14249  3.37574  2.79899  3.27698      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+      8   2.94437  3.58317  0.11766  3.48736      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+      9   2.94437  3.58317  0.11766  3.48736      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     10   3.42790  0.13083  3.47758  2.82520     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     11   1.89641  2.30749  2.51977  0.40062     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     12   2.94437  3.58317  0.11766  3.48736     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     13   2.90666  2.18699  2.96140  0.24674     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     14   2.90666  2.18699  2.96140  0.24674     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     15   0.14249  3.37574  2.79899  3.27698     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     16   2.94437  3.58317  0.11766  3.48736     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     17   3.42790  0.13083  3.47758  2.82520     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     18   3.42790  0.13083  3.47758  2.82520     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     19   2.94437  3.58317  0.11766  3.48736     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     20   0.14249  3.37574  2.79899  3.27698     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     21   2.94437  3.58317  0.11766  3.48736     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     22   2.94437  3.58317  0.11766  3.48736     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     23   2.94437  3.58317  0.11766  3.48736     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     24   3.42790  0.13083  3.47758  2.82520     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     25   2.94437  3.58317  0.11766  3.48736     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     26   3.08405  2.59224  3.13238  0.17941     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     27   2.94437  3.58317  0.11766  3.48736     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     28   3.42790  0.13083  3.47758  2.82520     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     29   3.42790  0.13083  3.47758  2.82520     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     30   3.08405  2.59224  3.13238  0.17941     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     31   2.94437  3.58317  0.11766  3.48736     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     32   3.42790  0.13083  3.47758  2.82520     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     33   3.42790  0.13083  3.47758  2.82520     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     34   3.08405  2.59224  3.13238  0.17941     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     35   2.94437  3.58317  0.11766  3.48736     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     36   2.94437  3.58317  0.11766  3.48736     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     37   2.94437  3.58317  0.11766  3.48736     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     38   3.42790  0.13083  3.47758  2.82520     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     39   2.94437  3.58317  0.11766  3.48736     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     40   3.08405  2.59224  3.13238  0.17941     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     41   3.42790  0.13083  3.47758  2.82520     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     42   3.08405  2.59224  3.13238  0.17941     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     43   3.08405  2.59224  3.13238  0.17941     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     44   3.08405  2.59224  3.13238  0.17941     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03698  4.00889  4.00889  1.46634  0.26236  1.09861  0.40547
+     45   2.96271  0.26173  3.02575  2.03961     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01866  3.99057        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentysevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:08:03 2012
+NSEQ  5
+EFFN  3.071289
+CKSUM 2888586029
+STATS LOCAL MSV       -8.1248  0.71931
+STATS LOCAL VITERBI   -7.8960  0.71931
+STATS LOCAL FORWARD   -3.7218  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54970  1.27953  1.04201  1.85294
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  0.00000        *
+      1   3.33613  0.14240  3.38959  2.75784      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+      2   2.88802  3.50187  0.12701  3.39782      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+      3   3.33613  0.14240  3.38959  2.75784      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+      4   3.33613  0.14240  3.38959  2.75784      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+      5   3.33613  0.14240  3.38959  2.75784      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+      6   2.88802  3.50187  0.12701  3.39782      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+      7   0.15351  3.29630  2.74702  3.19015      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+      8   2.88802  3.50187  0.12701  3.39782      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+      9   2.88802  3.50187  0.12701  3.39782      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     10   0.15351  3.29630  2.74702  3.19015     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     11   3.00463  2.54156  3.05596  0.19283     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     12   2.88802  3.50187  0.12701  3.39782     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     13   3.33613  0.14240  3.38959  2.75784     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     14   0.15351  3.29630  2.74702  3.19015     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     15   0.15351  3.29630  2.74702  3.19015     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     16   2.88802  3.50187  0.12701  3.39782     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     17   3.33613  0.14240  3.38959  2.75784     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     18   3.33613  0.14240  3.38959  2.75784     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     19   2.88802  3.50187  0.12701  3.39782     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     20   0.15351  3.29630  2.74702  3.19015     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     21   2.88802  3.50187  0.12701  3.39782     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     22   2.88802  3.50187  0.12701  3.39782     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     23   2.88802  3.50187  0.12701  3.39782     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     24   3.33613  0.14240  3.38959  2.75784     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     25   0.15351  3.29630  2.74702  3.19015     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     26   3.33613  0.14240  3.38959  2.75784     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     27   2.88802  3.50187  0.12701  3.39782     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     28   3.33613  0.14240  3.38959  2.75784     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     29   3.33613  0.14240  3.38959  2.75784     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     30   3.00463  2.54156  3.05596  0.19283     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     31   2.88802  3.50187  0.12701  3.39782     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     32   3.33613  0.14240  3.38959  2.75784     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     33   0.15351  3.29630  2.74702  3.19015     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     34   3.00463  2.54156  3.05596  0.19283     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     35   2.88802  3.50187  0.12701  3.39782     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     36   2.88802  3.50187  0.12701  3.39782     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     37   2.88802  3.50187  0.12701  3.39782     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     38   3.00463  2.54156  3.05596  0.19283     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     39   2.88802  3.50187  0.12701  3.39782     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     40   3.00463  2.54156  3.05596  0.19283     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     41   0.15351  3.29630  2.74702  3.19015     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     42   0.15351  3.29630  2.74702  3.19015     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     43   3.00463  2.54156  3.05596  0.19283     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     44   2.88802  3.50187  0.12701  3.39782     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03868  3.96486  3.96486  1.46634  0.26236  1.09861  0.40547
+     45   3.33613  0.14240  3.38959  2.75784     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01953  3.94571        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentysevenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:08:11 2012
+NSEQ  6
+EFFN  3.102539
+CKSUM 2734064390
+STATS LOCAL MSV       -8.2115  0.71931
+STATS LOCAL VITERBI   -7.8157  0.71931
+STATS LOCAL FORWARD   -3.5385  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71970  1.27293  1.04361  1.66765
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  0.00000        *
+      1   3.34866  0.14075  3.40161  2.76709      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+      2   2.89580  3.51302  0.12568  3.41008      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+      3   3.34866  0.14075  3.40161  2.76709      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+      4   3.34866  0.14075  3.40161  2.76709      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+      5   3.34866  0.14075  3.40161  2.76709      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+      6   0.15195  3.30713  2.75414  3.20197      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+      7   0.15195  3.30713  2.75414  3.20197      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+      8   2.89580  3.51302  0.12568  3.41008      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+      9   2.89580  3.51302  0.12568  3.41008      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     10   3.01538  2.54843  3.06630  0.19095     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     11   3.01538  2.54843  3.06630  0.19095     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     12   2.89580  3.51302  0.12568  3.41008     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     13   3.34866  0.14075  3.40161  2.76709     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     14   0.15195  3.30713  2.75414  3.20197     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     15   3.34866  0.14075  3.40161  2.76709     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     16   2.89580  3.51302  0.12568  3.41008     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     17   3.34866  0.14075  3.40161  2.76709     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     18   3.34866  0.14075  3.40161  2.76709     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     19   2.89580  3.51302  0.12568  3.41008     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     20   0.15195  3.30713  2.75414  3.20197     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     21   2.89580  3.51302  0.12568  3.41008     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     22   2.89580  3.51302  0.12568  3.41008     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     23   2.89580  3.51302  0.12568  3.41008     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     24   3.34866  0.14075  3.40161  2.76709     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     25   0.15195  3.30713  2.75414  3.20197     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     26   3.34866  0.14075  3.40161  2.76709     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     27   2.89580  3.51302  0.12568  3.41008     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     28   3.01538  2.54843  3.06630  0.19095     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     29   3.34866  0.14075  3.40161  2.76709     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     30   3.01538  2.54843  3.06630  0.19095     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     31   2.89580  3.51302  0.12568  3.41008     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     32   3.34866  0.14075  3.40161  2.76709     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     33   0.15195  3.30713  2.75414  3.20197     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     34   3.01538  2.54843  3.06630  0.19095     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     35   2.89580  3.51302  0.12568  3.41008     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     36   2.89580  3.51302  0.12568  3.41008     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     37   2.89580  3.51302  0.12568  3.41008     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     38   3.01538  2.54843  3.06630  0.19095     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     39   2.89580  3.51302  0.12568  3.41008     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     40   3.01538  2.54843  3.06630  0.19095     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     41   2.89580  3.51302  0.12568  3.41008     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     42   0.15195  3.30713  2.75414  3.20197     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     43   3.01538  2.54843  3.06630  0.19095     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     44   2.89580  3.51302  0.12568  3.41008     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03845  3.97077  3.97077  1.46634  0.26236  1.09861  0.40547
+     45   3.34866  0.14075  3.40161  2.76709     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01941  3.95173        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:07:10 2012
+NSEQ  95
+EFFN  3.273163
+CKSUM 688352655
+STATS LOCAL MSV       -8.2001  0.71932
+STATS LOCAL VITERBI   -7.8064  0.71932
+STATS LOCAL FORWARD   -3.7937  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81877  1.14736  1.03868  1.79350
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  0.00000        *
+      1   2.93635  3.57151  0.11895  3.47450      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+      2   3.41468  0.13243  3.46492  2.81556      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+      3   3.41468  0.13243  3.46492  2.81556      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+      4   3.41468  0.13243  3.46492  2.81556      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+      5   2.93635  3.57151  0.11895  3.47450      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+      6   0.14402  3.36428  2.79153  3.26443      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+      7   0.14402  3.36428  2.79153  3.26443      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04998  4.00244  3.49078  1.46634  0.26236  1.09861  0.40547
+      8   2.92085  3.54908  0.12148  3.44977      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03770  3.99016  3.99016  1.46634  0.26236  0.78800  0.60651
+      9   3.41468  0.13243  3.46492  2.81556      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     10   3.41468  0.13243  3.46492  2.81556     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     11   0.27430  2.83445  2.53617  2.28302     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     12   3.07250  2.58489  3.12127  0.18129     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     13   1.59713  1.94122  2.26115  0.59827     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     14   3.41468  0.13243  3.46492  2.81556     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     15   2.93635  3.57151  0.11895  3.47450     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     16   2.93635  3.57151  0.11895  3.47450     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     17   3.41468  0.13243  3.46492  2.81556     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     18   3.41468  0.13243  3.46492  2.81556     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     19   2.93635  3.57151  0.11895  3.47450     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     20   0.14402  3.36428  2.79153  3.26443     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     21   2.93635  3.57151  0.11895  3.47450     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     22   2.93635  3.57151  0.11895  3.47450     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     23   2.93635  3.57151  0.11895  3.47450     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     24   3.41468  0.13243  3.46492  2.81556     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     25   0.14402  3.36428  2.79153  3.26443     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     26   3.41468  0.13243  3.46492  2.81556     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     27   2.93635  3.57151  0.11895  3.47450     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     28   3.41468  0.13243  3.46492  2.81556     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     29   3.41468  0.13243  3.46492  2.81556     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     30   3.07250  2.58489  3.12127  0.18129     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     31   2.93635  3.57151  0.11895  3.47450     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     32   3.41468  0.13243  3.46492  2.81556     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     33   3.41468  0.13243  3.46492  2.81556     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     34   3.07250  2.58489  3.12127  0.18129     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     35   2.93635  3.57151  0.11895  3.47450     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     36   2.93635  3.57151  0.11895  3.47450     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     37   2.93635  3.57151  0.11895  3.47450     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     38   2.80462  1.99740  2.86304  0.29211     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     39   2.93635  3.57151  0.11895  3.47450     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     40   3.07250  2.58489  3.12127  0.18129     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     41   3.41468  0.13243  3.46492  2.81556     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     42   2.93635  3.57151  0.11895  3.47450     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     43   3.07250  2.58489  3.12127  0.18129     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     44   2.86288  3.24962  0.14204  3.30981     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03723  4.00244  4.00244  1.46634  0.26236  1.09861  0.40547
+     45   0.14402  3.36428  2.79153  3.26443     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01879  3.98400        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwoa_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:03:52 2012
+NSEQ  29
+EFFN  3.260376
+CKSUM 1765464125
+STATS LOCAL MSV       -8.1194  0.71933
+STATS LOCAL VITERBI   -7.9339  0.71933
+STATS LOCAL FORWARD   -3.8106  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.05609  1.07633  1.09226  1.63094
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  0.00000        *
+      1   2.93342  3.56726  0.11943  3.46982      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+      2   3.40987  0.13301  3.46030  2.81205      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+      3   3.40987  0.13301  3.46030  2.81205      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+      4   3.40987  0.13301  3.46030  2.81205      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+      5   2.93342  3.56726  0.11943  3.46982      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+      6   3.40987  0.13301  3.46030  2.81205      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+      7   2.93342  3.56726  0.11943  3.46982      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+      8   2.93342  3.56726  0.11943  3.46982      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+      9   3.06831  2.58222  3.11724  0.18198      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     10   3.11459  0.20711  3.17359  2.29441     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     11   3.06831  2.58222  3.11724  0.18198     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     12   3.06831  2.58222  3.11724  0.18198     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     13   2.62442  0.44765  2.69452  1.51042     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     14   3.06831  2.58222  3.11724  0.18198     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     15   2.93342  3.56726  0.11943  3.46982     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     16   2.93342  3.56726  0.11943  3.46982     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     17   3.40987  0.13301  3.46030  2.81205     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     18   3.40987  0.13301  3.46030  2.81205     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     19   0.14459  3.36011  2.78881  3.25987     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     20   0.14459  3.36011  2.78881  3.25987     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     21   2.93342  3.56726  0.11943  3.46982     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     22   2.93342  3.56726  0.11943  3.46982     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     23   2.93342  3.56726  0.11943  3.46982     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     24   3.40987  0.13301  3.46030  2.81205     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     25   0.14459  3.36011  2.78881  3.25987     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     26   3.40987  0.13301  3.46030  2.81205     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     27   2.93342  3.56726  0.11943  3.46982     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     28   3.06831  2.58222  3.11724  0.18198     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     29   3.40987  0.13301  3.46030  2.81205     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     30   3.06831  2.58222  3.11724  0.18198     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     31   2.93342  3.56726  0.11943  3.46982     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     32   3.40987  0.13301  3.46030  2.81205     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     33   3.40987  0.13301  3.46030  2.81205     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     34   3.06831  2.58222  3.11724  0.18198     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     35   2.93342  3.56726  0.11943  3.46982     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     36   2.93342  3.56726  0.11943  3.46982     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     37   2.93342  3.56726  0.11943  3.46982     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     38   3.40987  0.13301  3.46030  2.81205     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     39   2.93342  3.56726  0.11943  3.46982     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     40   3.06831  2.58222  3.11724  0.18198     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     41   3.40987  0.13301  3.46030  2.81205     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     42   0.14459  3.36011  2.78881  3.25987     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     43   2.90443  0.28254  2.96888  1.96615     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     44   3.40987  0.13301  3.46030  2.81205     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03732  4.00010  4.00010  1.46634  0.26236  1.09861  0.40547
+     45   2.93342  3.56726  0.11943  3.46982     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01883  3.98162        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwob_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:04:01 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2537645075
+STATS LOCAL MSV       -8.1699  0.71983
+STATS LOCAL VITERBI   -7.8032  0.71983
+STATS LOCAL FORWARD   -3.6142  0.71983
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.92558  1.10604  1.15098  1.57495
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   3.30705  0.14631  3.36166  2.73626     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.86982  3.47591  0.13017  3.36931     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwoc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:04:10 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1546457202
+STATS LOCAL MSV       -7.4416  0.72715
+STATS LOCAL VITERBI   -8.2310  0.72715
+STATS LOCAL FORWARD   -2.9315  0.72715
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.66948  1.15317  1.17024  1.68346
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.53331  3.02441  0.20344  2.88069     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwod_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:04:17 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3142111401
+STATS LOCAL MSV       -8.1951  0.71984
+STATS LOCAL VITERBI   -7.8511  0.71984
+STATS LOCAL FORWARD   -3.4557  0.71984
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63362  1.16016  1.20167  1.65731
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.86982  3.47591  0.13017  3.36931      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   0.15719  3.27118  2.73043  3.16274     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   0.15719  3.27118  2.73043  3.16274     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.86982  3.47591  0.13017  3.36931     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwoe_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:04:32 2012
+NSEQ  14
+EFFN  3.182129
+CKSUM 3263474986
+STATS LOCAL MSV       -8.2849  0.71931
+STATS LOCAL VITERBI   -7.9060  0.71931
+STATS LOCAL FORWARD   -3.3628  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.04320  1.23915  0.94907  1.64167
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  0.00000        *
+      1   2.91511  3.54080  0.12243  3.44065      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+      2   3.37995  0.13673  3.43163  2.79013      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+      3   3.37995  0.13673  3.43163  2.79013      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+      4   3.37995  0.13673  3.43163  2.79013      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+      5   2.91511  3.54080  0.12243  3.44065      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+      6   0.14813  3.33419  2.77189  3.23153      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+      7   2.91511  3.54080  0.12243  3.44065      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+      8   2.91511  3.54080  0.12243  3.44065      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+      9   3.37995  0.13673  3.43163  2.79013      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     10   2.44259  0.65730  2.51520  1.15845     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     11   3.04234  2.56566  3.09225  0.18632     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     12   3.04234  2.56566  3.09225  0.18632     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     13   2.91511  3.54080  0.12243  3.44065     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     14   3.04234  2.56566  3.09225  0.18632     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     15   2.91511  3.54080  0.12243  3.44065     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     16   2.91511  3.54080  0.12243  3.44065     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     17   3.37995  0.13673  3.43163  2.79013     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     18   3.37995  0.13673  3.43163  2.79013     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     19   2.91511  3.54080  0.12243  3.44065     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     20   0.14813  3.33419  2.77189  3.23153     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     21   2.91511  3.54080  0.12243  3.44065     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     22   2.91511  3.54080  0.12243  3.44065     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     23   2.91511  3.54080  0.12243  3.44065     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     24   3.37995  0.13673  3.43163  2.79013     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     25   0.14813  3.33419  2.77189  3.23153     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     26   3.37995  0.13673  3.43163  2.79013     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     27   2.91511  3.54080  0.12243  3.44065     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     28   3.37995  0.13673  3.43163  2.79013     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     29   3.37995  0.13673  3.43163  2.79013     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     30   3.04234  2.56566  3.09225  0.18632     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     31   2.91511  3.54080  0.12243  3.44065     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     32   3.37995  0.13673  3.43163  2.79013     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     33   3.04234  2.56566  3.09225  0.18632     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     34   3.04234  2.56566  3.09225  0.18632     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     35   2.91511  3.54080  0.12243  3.44065     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     36   2.91511  3.54080  0.12243  3.44065     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     37   2.91511  3.54080  0.12243  3.44065     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     38   3.37995  0.13673  3.43163  2.79013     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     39   2.91511  3.54080  0.12243  3.44065     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     40   3.04234  2.56566  3.09225  0.18632     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     41   3.37995  0.13673  3.43163  2.79013     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     42   0.14813  3.33419  2.77189  3.23153     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     43   3.04234  2.56566  3.09225  0.18632     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     44   2.91511  3.54080  0.12243  3.44065     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98567  3.98567  1.46634  0.26236  1.09861  0.40547
+     45   2.91511  3.54080  0.12243  3.44065     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01911  3.96691        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwof_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:04:41 2012
+NSEQ  6
+EFFN  3.219727
+CKSUM 3873813818
+STATS LOCAL MSV       -8.1728  0.71932
+STATS LOCAL VITERBI   -7.6377  0.71932
+STATS LOCAL FORWARD   -4.0506  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.82052  1.38584  1.14282  1.31294
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  0.00000        *
+      1   2.92399  3.55362  0.12096  3.45477      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      2   3.39443  0.13492  3.44551  2.80075      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      3   3.39443  0.13492  3.44551  2.80075      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      4   3.05488  2.57367  3.10432  0.18421      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      5   2.92399  3.55362  0.12096  3.45477      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      6   0.14640  3.34673  2.78009  3.24524      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      7   3.05488  2.57367  3.10432  0.18421      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      8   2.92399  3.55362  0.12096  3.45477      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+      9   3.39443  0.13492  3.44551  2.80075      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     10   3.39443  0.13492  3.44551  2.80075     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     11   0.14640  3.34673  2.78009  3.24524     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     12   3.05488  2.57367  3.10432  0.18421     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     13   3.05488  2.57367  3.10432  0.18421     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     14   3.05488  2.57367  3.10432  0.18421     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     15   2.92399  3.55362  0.12096  3.45477     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     16   2.92399  3.55362  0.12096  3.45477     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     17   3.05488  2.57367  3.10432  0.18421     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     18   2.92399  3.55362  0.12096  3.45477     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     19   2.92399  3.55362  0.12096  3.45477     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     20   0.14640  3.34673  2.78009  3.24524     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     21   2.92399  3.55362  0.12096  3.45477     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     22   2.92399  3.55362  0.12096  3.45477     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     23   2.92399  3.55362  0.12096  3.45477     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     24   3.39443  0.13492  3.44551  2.80075     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     25   0.14640  3.34673  2.78009  3.24524     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     26   3.39443  0.13492  3.44551  2.80075     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     27   0.14640  3.34673  2.78009  3.24524     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     28   3.05488  2.57367  3.10432  0.18421     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     29   3.39443  0.13492  3.44551  2.80075     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     30   3.05488  2.57367  3.10432  0.18421     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     31   2.92399  3.55362  0.12096  3.45477     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     32   3.39443  0.13492  3.44551  2.80075     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     33   3.39443  0.13492  3.44551  2.80075     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     34   3.05488  2.57367  3.10432  0.18421     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     35   2.92399  3.55362  0.12096  3.45477     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     36   3.05488  2.57367  3.10432  0.18421     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     37   2.92399  3.55362  0.12096  3.45477     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     38   3.05488  2.57367  3.10432  0.18421     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     39   2.92399  3.55362  0.12096  3.45477     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     40   3.05488  2.57367  3.10432  0.18421     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     41   3.39443  0.13492  3.44551  2.80075     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     42   0.14640  3.34673  2.78009  3.24524     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     43   3.39443  0.13492  3.44551  2.80075     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     44   2.92399  3.55362  0.12096  3.45477     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03760  3.99263  3.99263  1.46634  0.26236  1.09861  0.40547
+     45   3.05488  2.57367  3.10432  0.18421     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01898  3.97401        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwog_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:04:50 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4189612609
+STATS LOCAL MSV       -7.5585  0.72798
+STATS LOCAL VITERBI   -8.2493  0.72798
+STATS LOCAL FORWARD   -3.2939  0.72798
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.52018  1.19407  1.24915  1.65237
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.57915  2.25909  2.64442  0.28946     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.57915  2.25909  2.64442  0.28946     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   1.89532  1.96405  1.06955  1.00436     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.81865  0.23582  2.88868  2.35662     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwoh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:05:00 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 731096773
+STATS LOCAL MSV       -7.5025  0.72838
+STATS LOCAL VITERBI   -8.3209  0.72838
+STATS LOCAL FORWARD   -3.2627  0.72838
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63166  1.32411  1.21084  1.42541
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
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+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwoi_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:05:07 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 367268286
+STATS LOCAL MSV       -8.1402  0.72004
+STATS LOCAL VITERBI   -7.7871  0.72004
+STATS LOCAL FORWARD   -3.9309  0.72004
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.62474  1.46447  1.09052  1.44479
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
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+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.86982  3.47591  0.13017  3.36931     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwoj_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:05:15 2012
+NSEQ  5
+EFFN  3.364258
+CKSUM 36523570
+STATS LOCAL MSV       -8.1118  0.71932
+STATS LOCAL VITERBI   -7.5667  0.71932
+STATS LOCAL FORWARD   -3.6845  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81723  1.29833  1.10024  1.46212
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  0.00000        *
+      1   2.95673  3.60115  0.11570  3.50722      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      2   3.44834  0.12841  3.49715  2.84007      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      3   3.44834  0.12841  3.49715  2.84007      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      4   3.10197  2.60364  3.14962  0.17654      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      5   2.95673  3.60115  0.11570  3.50722      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      6   3.44834  0.12841  3.49715  2.84007      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      7   0.14016  3.39348  2.81050  3.29640      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      8   2.95673  3.60115  0.11570  3.50722      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+      9   3.44834  0.12841  3.49715  2.84007      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     10   3.44834  0.12841  3.49715  2.84007     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     11   0.14016  3.39348  2.81050  3.29640     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     12   2.45545  1.19657  2.52565  0.63123     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     13   3.10197  2.60364  3.14962  0.17654     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     14   0.14016  3.39348  2.81050  3.29640     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     15   2.95673  3.60115  0.11570  3.50722     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     16   2.95673  3.60115  0.11570  3.50722     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     17   3.44834  0.12841  3.49715  2.84007     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     18   3.44834  0.12841  3.49715  2.84007     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     19   2.36626  1.91759  0.39750  2.43947     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     20   0.14016  3.39348  2.81050  3.29640     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     21   2.95673  3.60115  0.11570  3.50722     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     22   2.95673  3.60115  0.11570  3.50722     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     23   2.95673  3.60115  0.11570  3.50722     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     24   3.44834  0.12841  3.49715  2.84007     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     25   0.14016  3.39348  2.81050  3.29640     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     26   3.44834  0.12841  3.49715  2.84007     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     27   2.95673  3.60115  0.11570  3.50722     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     28   3.10197  2.60364  3.14962  0.17654     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     29   3.10197  2.60364  3.14962  0.17654     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     30   3.10197  2.60364  3.14962  0.17654     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     31   2.95673  3.60115  0.11570  3.50722     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     32   3.44834  0.12841  3.49715  2.84007     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     33   3.10197  2.60364  3.14962  0.17654     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     34   3.10197  2.60364  3.14962  0.17654     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     35   2.95673  3.60115  0.11570  3.50722     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     36   2.95673  3.60115  0.11570  3.50722     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     37   2.95673  3.60115  0.11570  3.50722     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     38   3.10197  2.60364  3.14962  0.17654     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     39   2.95673  3.60115  0.11570  3.50722     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     40   3.10197  2.60364  3.14962  0.17654     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     41   3.44834  0.12841  3.49715  2.84007     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     42   0.14016  3.39348  2.81050  3.29640     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     43   3.10197  2.60364  3.14962  0.17654     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     44   2.95673  3.60115  0.11570  3.50722     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01895  4.01895  1.46634  0.26236  1.09861  0.40547
+     45   3.44834  0.12841  3.49715  2.84007     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01847  4.00081        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwok_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:05:22 2012
+NSEQ  7
+EFFN  3.448730
+CKSUM 3430059084
+STATS LOCAL MSV       -7.3025  0.71933
+STATS LOCAL VITERBI   -7.6783  0.71933
+STATS LOCAL FORWARD   -3.9356  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.76008  1.42979  1.13365  1.32143
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  0.00000        *
+      1   2.97490  3.62770  0.11288  3.53655      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+      2   3.47859  0.12491  3.52610  2.86199      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+      3   3.47859  0.12491  3.52610  2.86199      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+      4   3.12868  2.62060  3.17529  0.17235      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+      5   3.47859  0.12491  3.52610  2.86199      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+      6   0.13679  3.41978  2.82753  3.32522      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+      7   0.58968  2.32944  2.25016  1.41567      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+      8   2.97490  3.62770  0.11288  3.53655      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+      9   3.47859  0.12491  3.52610  2.86199      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     10   3.47859  0.12491  3.52610  2.86199     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     11   0.13679  3.41978  2.82753  3.32522     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     12   3.12868  2.62060  3.17529  0.17235     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     13   3.12868  2.62060  3.17529  0.17235     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     14   0.13679  3.41978  2.82753  3.32522     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     15   2.97490  3.62770  0.11288  3.53655     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     16   2.97490  3.62770  0.11288  3.53655     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     17   3.12868  2.62060  3.17529  0.17235     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     18   3.12868  2.62060  3.17529  0.17235     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     19   2.97490  3.62770  0.11288  3.53655     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     20   0.13679  3.41978  2.82753  3.32522     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     21   2.97490  3.62770  0.11288  3.53655     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     22   2.97490  3.62770  0.11288  3.53655     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     23   2.97490  3.62770  0.11288  3.53655     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     24   3.47859  0.12491  3.52610  2.86199     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     25   0.13679  3.41978  2.82753  3.32522     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     26   3.47859  0.12491  3.52610  2.86199     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     27   2.97490  3.62770  0.11288  3.53655     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     28   2.45321  1.12645  2.52382  0.67404     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     29   3.12868  2.62060  3.17529  0.17235     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     30   3.12868  2.62060  3.17529  0.17235     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     31   2.97490  3.62770  0.11288  3.53655     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     32   3.47859  0.12491  3.52610  2.86199     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     33   3.12868  2.62060  3.17529  0.17235     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     34   3.12868  2.62060  3.17529  0.17235     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     35   2.97490  3.62770  0.11288  3.53655     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     36   2.97490  3.62770  0.11288  3.53655     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     37   2.97490  3.62770  0.11288  3.53655     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     38   3.12868  2.62060  3.17529  0.17235     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     39   2.97490  3.62770  0.11288  3.53655     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     40   3.12868  2.62060  3.17529  0.17235     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     41   3.47859  0.12491  3.52610  2.86199     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     42   0.13679  3.41978  2.82753  3.32522     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     43   3.12868  2.62060  3.17529  0.17235     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     44   2.97490  3.62770  0.11288  3.53655     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03605  4.03402  4.03402  1.46634  0.26236  1.09861  0.40547
+     45   3.47859  0.12491  3.52610  2.86199     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01819  4.01615        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwol_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:05:41 2012
+NSEQ  116
+EFFN  3.961304
+CKSUM 538949657
+STATS LOCAL MSV       -7.1544  0.71931
+STATS LOCAL VITERBI   -7.8271  0.71931
+STATS LOCAL FORWARD   -3.3492  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.70967  1.06073  1.05535  2.08105
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  0.00000        *
+      1   3.07219  3.77129  0.09890  3.69572      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+      2   3.64389  0.10765  3.68396  2.98017      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+      3   3.64389  0.10765  3.68396  2.98017      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+      4   3.35116  0.17078  3.40267  2.42285      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+      5   3.07219  3.77129  0.09890  3.69572      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+      6   0.11978  3.56458  2.92066  3.48420      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+      7   3.07219  3.77129  0.09890  3.69572      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+      8   3.07219  3.77129  0.09890  3.69572      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+      9   3.57056  0.12179  3.61350  2.82067      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     10   3.64389  0.10765  3.68396  2.98017     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     11   0.22681  3.05073  2.68861  2.43467     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     12   0.30585  3.01533  1.83789  2.89466     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     13   2.51625  0.86740  2.58719  0.85810     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     14   3.08039  0.14719  3.42228  2.84230     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     15   2.98457  3.58256  0.12541  3.23158     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     16   3.07219  3.77129  0.09890  3.69572     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     17   2.70822  0.46588  2.77703  1.41248     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     18   3.29513  0.18546  3.34863  2.33222     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     19   0.83191  2.61877  0.89684  2.47654     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     20   0.11978  3.56458  2.92066  3.48420     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     21   3.07219  3.77129  0.09890  3.69572     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     22   3.07219  3.77129  0.09890  3.69572     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     23   3.07219  3.77129  0.09890  3.69572     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     24   3.64389  0.10765  3.68396  2.98017     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     25   0.11978  3.56458  2.92066  3.48420     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     26   3.64389  0.10765  3.68396  2.98017     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     27   3.07219  3.77129  0.09890  3.69572     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     28   3.27872  2.71575  3.31947  0.15083     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     29   3.17025  0.22248  3.22784  2.13851     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     30   2.85803  0.35730  2.92386  1.66428     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     31   3.07219  3.77129  0.09890  3.69572     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     32   3.64389  0.10765  3.68396  2.98017     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     33   3.54039  0.12787  3.58455  2.76016     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     34   3.27872  2.71575  3.31947  0.15083     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     35   3.07219  3.77129  0.09890  3.69572     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     36   3.07219  3.77129  0.09890  3.69572     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     37   3.07219  3.77129  0.09890  3.69572     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     38   3.64389  0.10765  3.68396  2.98017     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     39   3.07219  3.77129  0.09890  3.69572     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     40   3.27872  2.71575  3.31947  0.15083     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     41   3.64389  0.10765  3.68396  2.98017     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     42   0.11978  3.56458  2.92066  3.48420     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     43   0.18025  3.34188  2.40153  3.24455     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     44   2.25273  2.47350  0.29035  2.77099     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03300  4.12087  4.12087  1.46634  0.26236  1.09861  0.40547
+     45   3.64389  0.10765  3.68396  2.98017     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01664  4.10451        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwom_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:05:48 2012
+NSEQ  5
+EFFN  3.012695
+CKSUM 3140000806
+STATS LOCAL MSV       -8.2727  0.71934
+STATS LOCAL VITERBI   -7.9956  0.71934
+STATS LOCAL FORWARD   -3.4801  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72318  1.06872  1.04741  2.06195
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  0.00000        *
+      1   2.87311  3.48058  0.12960  3.37444      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+      2   3.31228  0.14560  3.36668  2.74015      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+      3   3.31228  0.14560  3.36668  2.74015      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+      4   3.31228  0.14560  3.36668  2.74015      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+      5   2.87311  3.48058  0.12960  3.37444      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+      6   0.15652  3.27570  2.73342  3.16767      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+      7   2.87311  3.48058  0.12960  3.37444      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+      8   2.87311  3.48058  0.12960  3.37444      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+      9   3.31228  0.14560  3.36668  2.74015      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     10   3.31228  0.14560  3.36668  2.74015     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     11   2.87311  3.48058  0.12960  3.37444     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     12   2.98425  2.52849  3.03633  0.19646     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     13   3.31228  0.14560  3.36668  2.74015     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     14   0.15652  3.27570  2.73342  3.16767     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     15   2.87311  3.48058  0.12960  3.37444     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     16   2.87311  3.48058  0.12960  3.37444     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     17   3.31228  0.14560  3.36668  2.74015     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     18   3.31228  0.14560  3.36668  2.74015     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     19   0.15652  3.27570  2.73342  3.16767     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     20   0.15652  3.27570  2.73342  3.16767     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     21   2.87311  3.48058  0.12960  3.37444     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     22   2.87311  3.48058  0.12960  3.37444     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     23   2.87311  3.48058  0.12960  3.37444     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     24   3.31228  0.14560  3.36668  2.74015     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     25   0.15652  3.27570  2.73342  3.16767     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     26   3.31228  0.14560  3.36668  2.74015     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     27   2.87311  3.48058  0.12960  3.37444     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     28   2.98425  2.52849  3.03633  0.19646     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     29   3.31228  0.14560  3.36668  2.74015     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     30   3.31228  0.14560  3.36668  2.74015     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     31   2.87311  3.48058  0.12960  3.37444     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     32   3.31228  0.14560  3.36668  2.74015     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     33   3.31228  0.14560  3.36668  2.74015     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     34   2.98425  2.52849  3.03633  0.19646     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     35   2.87311  3.48058  0.12960  3.37444     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     36   2.87311  3.48058  0.12960  3.37444     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     37   2.87311  3.48058  0.12960  3.37444     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     38   3.31228  0.14560  3.36668  2.74015     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     39   2.87311  3.48058  0.12960  3.37444     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     40   2.98425  2.52849  3.03633  0.19646     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     41   3.31228  0.14560  3.36668  2.74015     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     42   0.15652  3.27570  2.73342  3.16767     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     43   0.15652  3.27570  2.73342  3.16767     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     44   2.87311  3.48058  0.12960  3.37444     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03912  3.95368  3.95368  1.46634  0.26236  1.09861  0.40547
+     45   3.31228  0.14560  3.36668  2.74015     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01975  3.93431        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwon_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:05:56 2012
+NSEQ  89
+EFFN  3.805206
+CKSUM 1005965737
+STATS LOCAL MSV       -7.3815  0.71932
+STATS LOCAL VITERBI   -7.8302  0.71932
+STATS LOCAL FORWARD   -3.5553  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.64251  1.12328  1.08155  1.95033
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  0.00000        *
+      1   3.04470  3.73053  0.10266  3.65047      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+      2   3.59670  0.11228  3.63895  2.94668      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+      3   3.59670  0.11228  3.63895  2.94668      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+      4   2.66051  1.47511  2.72546  0.45284      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+      5   2.97092  3.57249  0.12491  3.26803      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+      6   0.12440  3.52302  2.89399  3.43852      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+      7   2.97300  3.57677  0.12426  3.27724      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+      8   3.04470  3.73053  0.10266  3.65047      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+      9   3.59670  0.11228  3.63895  2.94668      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     10   3.46992  0.13784  3.51689  2.68896     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     11   0.12440  3.52302  2.89399  3.43852     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     12   0.20209  3.02215  2.58211  2.83581     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     13   3.44636  0.14295  3.49423  2.64547     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     14   2.70171  2.30113  2.96020  0.24724     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     15   2.64615  3.54987  0.14062  3.45677     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     16   3.04470  3.73053  0.10266  3.65047     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     17   3.45477  0.14111  3.50232  2.66087     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     18   2.89013  0.32717  2.95513  1.76379     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     19   0.19587  3.26763  2.32726  3.16474     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     20   0.12440  3.52302  2.89399  3.43852     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     21   2.61866  3.53526  0.14397  3.44103     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     22   3.04470  3.73053  0.10266  3.65047     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     23   3.04470  3.73053  0.10266  3.65047     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     24   3.59670  0.11228  3.63895  2.94668     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     25   0.12440  3.52302  2.89399  3.43852     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     26   3.50014  0.13147  3.54596  2.74642     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     27   3.04470  3.73053  0.10266  3.65047     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     28   3.15922  2.49068  3.20480  0.18138     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     29   3.08200  0.24476  3.14207  2.05534     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     30   3.44545  0.14315  3.49335  2.64381     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     31   3.04470  3.73053  0.10266  3.65047     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     32   3.59670  0.11228  3.63895  2.94668     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     33   3.38625  0.15662  3.43637  2.53892     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     34   3.23512  2.68809  3.27758  0.15675     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     35   3.04470  3.73053  0.10266  3.65047     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     36   3.04470  3.73053  0.10266  3.65047     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     37   3.04470  3.73053  0.10266  3.65047     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     38   2.88303  0.26842  2.66900  2.20610     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     39   3.04470  3.73053  0.10266  3.65047     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     40   3.23512  2.68809  3.27758  0.15675     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     41   3.24277  0.19357  3.29791  2.30284     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     42   0.12440  3.52302  2.89399  3.43852     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     43   0.23909  2.99369  2.65083  2.38640     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     44   2.26597  3.32606  0.19816  3.21653     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03387  4.09521  4.09521  1.46634  0.26236  1.09861  0.40547
+     45   3.44691  0.14283  3.49476  2.64649     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01708  4.07842        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwoo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:06:04 2012
+NSEQ  6
+EFFN  3.120117
+CKSUM 1384330421
+STATS LOCAL MSV       -8.0965  0.71932
+STATS LOCAL VITERBI   -7.8574  0.71932
+STATS LOCAL FORWARD   -3.6227  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.63454  1.21367  1.14412  1.66418
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  0.00000        *
+      1   2.90013  3.51923  0.12494  3.41691      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+      2   3.35564  0.13984  3.40831  2.77225      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+      3   3.35564  0.13984  3.40831  2.77225      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+      4   3.35564  0.13984  3.40831  2.77225      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+      5   2.90013  3.51923  0.12494  3.41691      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+      6   0.15109  3.31317  2.75811  3.20856      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+      7   2.90013  3.51923  0.12494  3.41691      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+      8   2.90013  3.51923  0.12494  3.41691      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+      9   3.35564  0.13984  3.40831  2.77225      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     10   3.35564  0.13984  3.40831  2.77225     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     11   0.15109  3.31317  2.75811  3.20856     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     12   0.15109  3.31317  2.75811  3.20856     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     13   3.35564  0.13984  3.40831  2.77225     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     14   3.35564  0.13984  3.40831  2.77225     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     15   2.90013  3.51923  0.12494  3.41691     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     16   2.90013  3.51923  0.12494  3.41691     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     17   3.02138  2.55227  3.07208  0.18991     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     18   3.35564  0.13984  3.40831  2.77225     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     19   0.15109  3.31317  2.75811  3.20856     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     20   0.15109  3.31317  2.75811  3.20856     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     21   2.90013  3.51923  0.12494  3.41691     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     22   2.90013  3.51923  0.12494  3.41691     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     23   2.90013  3.51923  0.12494  3.41691     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     24   3.35564  0.13984  3.40831  2.77225     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     25   0.15109  3.31317  2.75811  3.20856     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     26   3.35564  0.13984  3.40831  2.77225     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     27   2.90013  3.51923  0.12494  3.41691     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     28   3.02138  2.55227  3.07208  0.18991     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     29   3.02138  2.55227  3.07208  0.18991     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     30   3.02138  2.55227  3.07208  0.18991     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     31   3.02138  2.55227  3.07208  0.18991     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     32   3.35564  0.13984  3.40831  2.77225     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     33   3.35564  0.13984  3.40831  2.77225     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     34   3.02138  2.55227  3.07208  0.18991     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     35   2.90013  3.51923  0.12494  3.41691     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     36   2.90013  3.51923  0.12494  3.41691     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     37   2.90013  3.51923  0.12494  3.41691     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     38   3.02138  2.55227  3.07208  0.18991     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     39   2.90013  3.51923  0.12494  3.41691     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     40   3.02138  2.55227  3.07208  0.18991     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     41   3.35564  0.13984  3.40831  2.77225     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     42   0.15109  3.31317  2.75811  3.20856     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     43   0.15109  3.31317  2.75811  3.20856     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     44   2.90013  3.51923  0.12494  3.41691     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03832  3.97408  3.97408  1.46634  0.26236  1.09861  0.40547
+     45   3.35564  0.13984  3.40831  2.77225     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01934  3.95510        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwop_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:06:14 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1100070553
+STATS LOCAL MSV       -8.1489  0.71969
+STATS LOCAL VITERBI   -7.8550  0.71969
+STATS LOCAL FORWARD   -3.7050  0.71969
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.55400  1.11344  1.20131  1.83651
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   2.97980  2.52563  3.03204  0.19727      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.97980  2.52563  3.03204  0.19727     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.86982  3.47591  0.13017  3.36931     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwoq_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:06:22 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 4026879485
+STATS LOCAL MSV       -8.2087  0.71964
+STATS LOCAL VITERBI   -7.9281  0.71964
+STATS LOCAL FORWARD   -3.2659  0.71964
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.71764  1.21985  1.04576  1.74978
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.97980  2.52563  3.03204  0.19727     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   2.97980  2.52563  3.03204  0.19727     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   3.30705  0.14631  3.36166  2.73626     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   3.30705  0.14631  3.36166  2.73626     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.86982  3.47591  0.13017  3.36931     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.86982  3.47591  0.13017  3.36931     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwor_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:06:32 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2741897416
+STATS LOCAL MSV       -7.7301  0.72718
+STATS LOCAL VITERBI   -8.3714  0.72718
+STATS LOCAL FORWARD   -3.1304  0.72718
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.83360  1.15080  1.12517  1.61354
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.53331  3.02441  0.20344  2.88069      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.81865  0.23582  2.88868  2.35662     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   0.23862  2.84929  2.43386  2.70756     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.53331  3.02441  0.20344  2.88069     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.81865  0.23582  2.88868  2.35662     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwos_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:06:39 2012
+NSEQ  4
+EFFN  3.175781
+CKSUM 1647101817
+STATS LOCAL MSV       -8.1934  0.71933
+STATS LOCAL VITERBI   -7.6964  0.71933
+STATS LOCAL FORWARD   -3.7242  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   2.05058  1.08581  1.04413  1.70534
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  0.00000        *
+      1   2.91360  3.53861  0.12268  3.43825      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      2   3.37748  0.13704  3.42926  2.78832      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      3   3.37748  0.13704  3.42926  2.78832      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      4   3.37748  0.13704  3.42926  2.78832      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      5   2.91360  3.53861  0.12268  3.43825      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      6   2.91360  3.53861  0.12268  3.43825      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      7   0.14843  3.33206  2.77050  3.22920      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      8   2.91360  3.53861  0.12268  3.43825      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      9   3.37748  0.13704  3.42926  2.78832      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     10   3.37748  0.13704  3.42926  2.78832     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     11   3.04021  2.56430  3.09020  0.18668     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     12   3.04021  2.56430  3.09020  0.18668     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     13   3.37748  0.13704  3.42926  2.78832     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     14   3.04021  2.56430  3.09020  0.18668     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     15   2.91360  3.53861  0.12268  3.43825     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     16   2.91360  3.53861  0.12268  3.43825     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     17   3.37748  0.13704  3.42926  2.78832     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     18   3.37748  0.13704  3.42926  2.78832     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     19   2.91360  3.53861  0.12268  3.43825     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     20   0.14843  3.33206  2.77050  3.22920     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     21   2.91360  3.53861  0.12268  3.43825     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     22   2.91360  3.53861  0.12268  3.43825     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     23   2.91360  3.53861  0.12268  3.43825     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     24   3.37748  0.13704  3.42926  2.78832     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     25   0.14843  3.33206  2.77050  3.22920     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     26   3.37748  0.13704  3.42926  2.78832     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     27   2.91360  3.53861  0.12268  3.43825     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     28   3.04021  2.56430  3.09020  0.18668     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     29   3.37748  0.13704  3.42926  2.78832     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     30   3.04021  2.56430  3.09020  0.18668     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     31   2.91360  3.53861  0.12268  3.43825     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     32   3.37748  0.13704  3.42926  2.78832     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     33   3.37748  0.13704  3.42926  2.78832     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     34   3.04021  2.56430  3.09020  0.18668     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     35   2.91360  3.53861  0.12268  3.43825     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     36   2.91360  3.53861  0.12268  3.43825     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     37   2.91360  3.53861  0.12268  3.43825     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     38   3.37748  0.13704  3.42926  2.78832     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     39   2.91360  3.53861  0.12268  3.43825     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     40   3.04021  2.56430  3.09020  0.18668     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     41   3.37748  0.13704  3.42926  2.78832     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     42   0.14843  3.33206  2.77050  3.22920     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     43   2.37895  0.96228  2.45142  0.82289     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     44   2.91360  3.53861  0.12268  3.43825     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     45   3.37748  0.13704  3.42926  2.78832     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01914  3.96571        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwot_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:06:47 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3561680478
+STATS LOCAL MSV       -8.2737  0.71962
+STATS LOCAL VITERBI   -7.7056  0.71962
+STATS LOCAL FORWARD   -3.6667  0.71962
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.72378  1.06331  1.14947  1.83576
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.86982  3.47591  0.13017  3.36931      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   3.30705  0.14631  3.36166  2.73626      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.86982  3.47591  0.13017  3.36931      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.97980  2.52563  3.03204  0.19727     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   0.15719  3.27118  2.73043  3.16274     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   3.30705  0.14631  3.36166  2.73626     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   0.15719  3.27118  2.73043  3.16274     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   3.30705  0.14631  3.36166  2.73626     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   0.15719  3.27118  2.73043  3.16274     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.86982  3.47591  0.13017  3.36931     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   3.30705  0.14631  3.36166  2.73626     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   3.30705  0.14631  3.36166  2.73626     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.97980  2.52563  3.03204  0.19727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   3.30705  0.14631  3.36166  2.73626     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_twentytwou_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 01:06:56 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 240493008
+STATS LOCAL MSV       -7.5228  0.72718
+STATS LOCAL VITERBI   -8.2769  0.72718
+STATS LOCAL FORWARD   -3.1256  0.72718
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.83332  1.15081  1.12531  1.61351
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.81865  0.23582  2.88868  2.35662      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
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+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
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+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.53331  3.02441  0.20344  2.88069      8 - -
+          1.38629  1.38629  1.38629  1.38629
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+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Tracheophyta_58S_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sat Feb 18 00:55:23 2012
+NSEQ  29
+EFFN  3.246216
+CKSUM 3154564610
+STATS LOCAL MSV       -8.3504  0.71932
+STATS LOCAL VITERBI   -7.5845  0.71932
+STATS LOCAL FORWARD   -3.8947  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.81993  1.14571  1.08965  1.69482
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99751  3.99751  1.46634  0.26236  0.00000        *
+      1   2.93015  3.56253  0.11996  3.46460      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
+      2   3.40451  0.13367  3.45517  2.80813      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
+      3   3.40451  0.13367  3.45517  2.80813      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
+      4   3.11719  0.20567  3.17613  2.30386      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
+      5   2.93015  3.56253  0.11996  3.46460      5 - -
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+      6   0.14521  3.35547  2.78579  3.25479      6 - -
+          1.38629  1.38629  1.38629  1.38629
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+          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
+     42   0.14521  3.35547  2.78579  3.25479     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
+     43   3.40451  0.13367  3.45517  2.80813     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
+     44   2.93015  3.56253  0.11996  3.46460     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03741  3.99751  3.99751  1.46634  0.26236  1.09861  0.40547
+     45   3.40451  0.13367  3.45517  2.80813     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01888  3.97897        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:00:21 2012
+NSEQ  18
+EFFN  3.300293
+CKSUM 3900505399
+STATS LOCAL MSV       -8.0180  0.71934
+STATS LOCAL VITERBI   -7.6250  0.71934
+STATS LOCAL FORWARD   -4.2046  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40393  1.38116  1.37967  1.38063
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  0.00000        *
+      1   3.08135  2.59052  3.12978  0.17985      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+      2   2.94250  3.58045  0.11796  3.48436      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+      3   0.14285  3.37307  2.79725  3.27405      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+      4   3.42482  0.13120  3.47463  2.82296      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+      5   3.08135  2.59052  3.12978  0.17985      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+      6   3.42482  0.13120  3.47463  2.82296      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+      7   3.08135  2.59052  3.12978  0.17985      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+      8   3.42482  0.13120  3.47463  2.82296      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+      9   2.94250  3.58045  0.11796  3.48436      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     10   2.94250  3.58045  0.11796  3.48436     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     11   3.42482  0.13120  3.47463  2.82296     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     12   0.14285  3.37307  2.79725  3.27405     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     13   0.14285  3.37307  2.79725  3.27405     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     14   2.71603  1.81090  2.77762  0.34507     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     15   2.94250  3.58045  0.11796  3.48436     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     16   2.94250  3.58045  0.11796  3.48436     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     17   0.14285  3.37307  2.79725  3.27405     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     18   3.08135  2.59052  3.12978  0.17985     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     19   0.14285  3.37307  2.79725  3.27405     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     20   3.08135  2.59052  3.12978  0.17985     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     21   3.42482  0.13120  3.47463  2.82296     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     22   3.08135  2.59052  3.12978  0.17985     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     23   3.42482  0.13120  3.47463  2.82296     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     24   2.94250  3.58045  0.11796  3.48436     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     25   2.94250  3.58045  0.11796  3.48436     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     26   3.42482  0.13120  3.47463  2.82296     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     27   3.08135  2.59052  3.12978  0.17985     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     28   3.42482  0.13120  3.47463  2.82296     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     29   3.08135  2.59052  3.12978  0.17985     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     30   3.08135  2.59052  3.12978  0.17985     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     31   2.94250  3.58045  0.11796  3.48436     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     32   3.42482  0.13120  3.47463  2.82296     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     33   0.14285  3.37307  2.79725  3.27405     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     34   3.08135  2.59052  3.12978  0.17985     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     35   3.42482  0.13120  3.47463  2.82296     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     36   2.94250  3.58045  0.11796  3.48436     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     37   0.14285  3.37307  2.79725  3.27405     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     38   3.08135  2.59052  3.12978  0.17985     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     39   2.94250  3.58045  0.11796  3.48436     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     40   0.14285  3.37307  2.79725  3.27405     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     41   0.14285  3.37307  2.79725  3.27405     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     42   2.94250  3.58045  0.11796  3.48436     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     43   0.14285  3.37307  2.79725  3.27405     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     44   0.14285  3.37307  2.79725  3.27405     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03704  4.00739  4.00739  1.46634  0.26236  1.09861  0.40547
+     45   3.42482  0.13120  3.47463  2.82296     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01869  3.98904        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_elevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:15:03 2012
+NSEQ  5
+EFFN  3.198242
+CKSUM 492245523
+STATS LOCAL MSV       -8.0269  0.71932
+STATS LOCAL VITERBI   -7.6136  0.71932
+STATS LOCAL FORWARD   -3.7504  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34311  1.20704  1.45350  1.57922
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  0.00000        *
+      1   3.38618  0.13595  3.43760  2.79470      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      2   2.91894  3.54631  0.12180  3.44673      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      3   0.14739  3.33958  2.77542  3.23743      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      4   3.38618  0.13595  3.43760  2.79470      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      5   3.04773  2.56910  3.09744  0.18541      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      6   3.38618  0.13595  3.43760  2.79470      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      7   3.04773  2.56910  3.09744  0.18541      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      8   3.38618  0.13595  3.43760  2.79470      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+      9   2.91894  3.54631  0.12180  3.44673      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     10   0.14739  3.33958  2.77542  3.23743     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     11   3.38618  0.13595  3.43760  2.79470     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     12   0.14739  3.33958  2.77542  3.23743     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     13   0.14739  3.33958  2.77542  3.23743     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     14   3.38618  0.13595  3.43760  2.79470     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     15   2.91894  3.54631  0.12180  3.44673     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     16   2.91894  3.54631  0.12180  3.44673     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     17   0.14739  3.33958  2.77542  3.23743     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     18   3.04773  2.56910  3.09744  0.18541     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     19   0.14739  3.33958  2.77542  3.23743     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     20   3.04773  2.56910  3.09744  0.18541     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     21   3.38618  0.13595  3.43760  2.79470     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     22   3.04773  2.56910  3.09744  0.18541     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     23   3.38618  0.13595  3.43760  2.79470     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     24   2.91894  3.54631  0.12180  3.44673     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     25   2.91894  3.54631  0.12180  3.44673     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     26   3.38618  0.13595  3.43760  2.79470     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     27   3.04773  2.56910  3.09744  0.18541     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     28   3.38618  0.13595  3.43760  2.79470     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     29   3.04773  2.56910  3.09744  0.18541     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     30   3.38618  0.13595  3.43760  2.79470     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     31   2.91894  3.54631  0.12180  3.44673     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     32   3.38618  0.13595  3.43760  2.79470     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     33   0.14739  3.33958  2.77542  3.23743     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     34   3.04773  2.56910  3.09744  0.18541     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     35   3.38618  0.13595  3.43760  2.79470     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     36   2.91894  3.54631  0.12180  3.44673     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     37   0.14739  3.33958  2.77542  3.23743     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     38   3.04773  2.56910  3.09744  0.18541     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     39   2.91894  3.54631  0.12180  3.44673     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     40   0.14739  3.33958  2.77542  3.23743     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     41   0.14739  3.33958  2.77542  3.23743     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     42   2.91894  3.54631  0.12180  3.44673     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     43   0.14739  3.33958  2.77542  3.23743     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     44   0.14739  3.33958  2.77542  3.23743     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
+     45   3.38618  0.13595  3.43760  2.79470     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01905  3.96996        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_elevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:15:08 2012
+NSEQ  6
+EFFN  3.249023
+CKSUM 1930426942
+STATS LOCAL MSV       -8.0932  0.71932
+STATS LOCAL VITERBI   -7.5450  0.71932
+STATS LOCAL FORWARD   -4.0595  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27768  1.39135  1.44912  1.43632
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  0.00000        *
+      1   3.06457  2.57984  3.11364  0.18260      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      2   2.93080  3.56347  0.11985  3.46564      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      3   0.14509  3.35639  2.78639  3.25580      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      4   3.40558  0.13354  3.45619  2.80891      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      5   3.06457  2.57984  3.11364  0.18260      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      6   3.40558  0.13354  3.45619  2.80891      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      7   3.06457  2.57984  3.11364  0.18260      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      8   3.40558  0.13354  3.45619  2.80891      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+      9   2.93080  3.56347  0.11985  3.46564      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     10   0.14509  3.35639  2.78639  3.25580     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     11   3.40558  0.13354  3.45619  2.80891     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     12   0.14509  3.35639  2.78639  3.25580     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     13   0.14509  3.35639  2.78639  3.25580     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     14   3.40558  0.13354  3.45619  2.80891     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     15   2.93080  3.56347  0.11985  3.46564     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     16   2.93080  3.56347  0.11985  3.46564     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     17   0.14509  3.35639  2.78639  3.25580     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     18   3.06457  2.57984  3.11364  0.18260     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     19   0.14509  3.35639  2.78639  3.25580     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     20   3.06457  2.57984  3.11364  0.18260     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     21   3.40558  0.13354  3.45619  2.80891     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     22   3.06457  2.57984  3.11364  0.18260     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     23   0.14509  3.35639  2.78639  3.25580     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     24   2.93080  3.56347  0.11985  3.46564     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     25   2.93080  3.56347  0.11985  3.46564     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     26   3.40558  0.13354  3.45619  2.80891     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     27   3.06457  2.57984  3.11364  0.18260     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     28   3.40558  0.13354  3.45619  2.80891     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     29   3.06457  2.57984  3.11364  0.18260     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     30   3.06457  2.57984  3.11364  0.18260     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     31   2.93080  3.56347  0.11985  3.46564     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     32   3.40558  0.13354  3.45619  2.80891     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     33   0.14509  3.35639  2.78639  3.25580     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     34   3.06457  2.57984  3.11364  0.18260     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     35   3.40558  0.13354  3.45619  2.80891     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     36   2.93080  3.56347  0.11985  3.46564     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     37   0.14509  3.35639  2.78639  3.25580     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     38   3.06457  2.57984  3.11364  0.18260     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     39   2.93080  3.56347  0.11985  3.46564     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     40   0.14509  3.35639  2.78639  3.25580     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     41   0.14509  3.35639  2.78639  3.25580     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     42   2.93080  3.56347  0.11985  3.46564     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     43   0.14509  3.35639  2.78639  3.25580     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     44   0.14509  3.35639  2.78639  3.25580     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
+     45   3.40558  0.13354  3.45619  2.80891     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01887  3.97950        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_elevenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:15:15 2012
+NSEQ  4
+EFFN  3.175781
+CKSUM 329736315
+STATS LOCAL MSV       -8.1238  0.71932
+STATS LOCAL VITERBI   -7.6526  0.71932
+STATS LOCAL FORWARD   -3.7764  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34425  1.15438  1.45439  1.65827
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  0.00000        *
+      1   3.37748  0.13704  3.42926  2.78832      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      2   2.91360  3.53861  0.12268  3.43825      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      3   0.14843  3.33206  2.77050  3.22920      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      4   3.37748  0.13704  3.42926  2.78832      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      5   3.04021  2.56430  3.09020  0.18668      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      6   3.37748  0.13704  3.42926  2.78832      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      7   3.04021  2.56430  3.09020  0.18668      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      8   3.37748  0.13704  3.42926  2.78832      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+      9   2.91360  3.53861  0.12268  3.43825      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     10   0.14843  3.33206  2.77050  3.22920     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     11   3.37748  0.13704  3.42926  2.78832     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     12   0.14843  3.33206  2.77050  3.22920     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     13   0.14843  3.33206  2.77050  3.22920     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     14   3.37748  0.13704  3.42926  2.78832     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     15   2.91360  3.53861  0.12268  3.43825     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     16   2.91360  3.53861  0.12268  3.43825     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     17   0.14843  3.33206  2.77050  3.22920     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     18   3.04021  2.56430  3.09020  0.18668     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     19   0.14843  3.33206  2.77050  3.22920     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     20   3.04021  2.56430  3.09020  0.18668     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     21   3.37748  0.13704  3.42926  2.78832     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     22   3.37748  0.13704  3.42926  2.78832     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     23   3.37748  0.13704  3.42926  2.78832     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     24   2.91360  3.53861  0.12268  3.43825     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     25   2.91360  3.53861  0.12268  3.43825     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     26   3.37748  0.13704  3.42926  2.78832     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     27   3.04021  2.56430  3.09020  0.18668     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     28   3.37748  0.13704  3.42926  2.78832     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     29   3.04021  2.56430  3.09020  0.18668     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     30   3.37748  0.13704  3.42926  2.78832     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     31   2.91360  3.53861  0.12268  3.43825     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     32   3.37748  0.13704  3.42926  2.78832     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     33   0.14843  3.33206  2.77050  3.22920     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     34   3.04021  2.56430  3.09020  0.18668     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     35   3.37748  0.13704  3.42926  2.78832     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     36   2.91360  3.53861  0.12268  3.43825     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     37   0.14843  3.33206  2.77050  3.22920     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     38   3.04021  2.56430  3.09020  0.18668     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     39   2.91360  3.53861  0.12268  3.43825     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     40   0.14843  3.33206  2.77050  3.22920     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     41   0.14843  3.33206  2.77050  3.22920     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     42   2.91360  3.53861  0.12268  3.43825     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     43   0.14843  3.33206  2.77050  3.22920     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     44   0.14843  3.33206  2.77050  3.22920     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
+     45   3.37748  0.13704  3.42926  2.78832     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01914  3.96571        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_elevend_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:15:21 2012
+NSEQ  5
+EFFN  3.413086
+CKSUM 4236102742
+STATS LOCAL MSV       -7.4888  0.71931
+STATS LOCAL VITERBI   -7.5745  0.71931
+STATS LOCAL FORWARD   -4.1218  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40009  1.35456  1.43150  1.36096
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  0.00000        *
+      1   3.11748  2.61349  3.16453  0.17409      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      2   2.96731  3.61661  0.11405  3.52429      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      3   0.13819  3.40877  2.82041  3.31315      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      4   3.46593  0.12636  3.51399  2.85283      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      5   3.11748  2.61349  3.16453  0.17409      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      6   3.46593  0.12636  3.51399  2.85283      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      7   3.11748  2.61349  3.16453  0.17409      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      8   3.46593  0.12636  3.51399  2.85283      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+      9   2.96731  3.61661  0.11405  3.52429      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     10   2.96731  3.61661  0.11405  3.52429     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     11   3.46593  0.12636  3.51399  2.85283     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     12   0.13819  3.40877  2.82041  3.31315     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     13   0.13819  3.40877  2.82041  3.31315     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     14   3.46593  0.12636  3.51399  2.85283     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     15   2.96731  3.61661  0.11405  3.52429     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     16   2.96731  3.61661  0.11405  3.52429     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     17   0.13819  3.40877  2.82041  3.31315     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     18   3.11748  2.61349  3.16453  0.17409     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     19   0.13819  3.40877  2.82041  3.31315     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     20   3.11748  2.61349  3.16453  0.17409     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     21   3.46593  0.12636  3.51399  2.85283     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     22   3.11748  2.61349  3.16453  0.17409     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     23   3.11748  2.61349  3.16453  0.17409     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     24   2.10789  0.81520  1.20364  1.99617     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     25   2.96731  3.61661  0.11405  3.52429     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     26   3.46593  0.12636  3.51399  2.85283     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     27   3.11748  2.61349  3.16453  0.17409     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     28   3.46593  0.12636  3.51399  2.85283     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     29   3.11748  2.61349  3.16453  0.17409     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     30   3.11748  2.61349  3.16453  0.17409     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     31   2.96731  3.61661  0.11405  3.52429     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     32   3.46593  0.12636  3.51399  2.85283     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     33   0.13819  3.40877  2.82041  3.31315     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     34   3.11748  2.61349  3.16453  0.17409     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     35   3.46593  0.12636  3.51399  2.85283     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     36   2.96731  3.61661  0.11405  3.52429     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     37   0.13819  3.40877  2.82041  3.31315     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     38   3.11748  2.61349  3.16453  0.17409     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     39   2.96731  3.61661  0.11405  3.52429     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     40   0.13819  3.40877  2.82041  3.31315     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     41   0.13819  3.40877  2.82041  3.31315     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     42   2.96731  3.61661  0.11405  3.52429     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     43   0.13819  3.40877  2.82041  3.31315     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     44   0.13819  3.40877  2.82041  3.31315     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
+     45   3.46593  0.12636  3.51399  2.85283     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01831  4.00971        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_elevene_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:15:26 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1433949084
+STATS LOCAL MSV       -7.5231  0.72801
+STATS LOCAL VITERBI   -8.1368  0.72801
+STATS LOCAL FORWARD   -3.4187  0.72801
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29217  1.29112  1.49927  1.48250
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_elevenf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:15:34 2012
+NSEQ  3158
+EFFN  3.653196
+CKSUM 2420636055
+STATS LOCAL MSV       -7.8226  0.71933
+STATS LOCAL VITERBI   -7.6855  0.71933
+STATS LOCAL FORWARD   -3.9132  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39185  1.23333  1.38511  1.56175
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  0.00000        *
+      1   2.57583  0.45001  2.63698  1.53848      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+      2   2.88582  3.63349  0.11775  3.54577      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+      3   0.13788  3.44636  2.77956  3.35604      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+      4   3.54821  0.11728  3.59265  2.91207      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+      5   3.19098  2.66011  3.23517  0.16302      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+      6   3.42986  0.13697  3.40536  2.77390      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+      7   3.09775  2.42630  3.14563  0.19426      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+      8   3.44877  0.13309  3.42268  2.81007      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+      9   3.01623  3.68846  0.10671  3.60382      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     10   2.48283  3.36876  0.17283  3.19955     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     11   3.50423  0.12601  3.55014  2.81999     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     12   0.12934  3.48051  2.86668  3.39184     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     13   0.13749  3.44790  2.78335  3.35766     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     14   3.49938  0.12700  3.54546  2.81022     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     15   2.92829  3.65209  0.11396  3.56553     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     16   2.92829  3.65209  0.11396  3.56553     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     17   0.12934  3.48051  2.86668  3.39184     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     18   3.19098  2.66011  3.23517  0.16302     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     19   0.12934  3.48051  2.86668  3.39184     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     20   3.00669  2.63039  3.15909  0.17909     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     21   3.47468  0.13208  3.52163  2.76138     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     22   3.14563  2.54221  3.19154  0.17774     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     23   2.40428  0.27051  2.83402  2.43148     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     24   3.01623  3.68846  0.10671  3.60382     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     25   2.92872  3.60390  0.11987  3.43317     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     26   3.50426  0.12601  3.55016  2.82005     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     27   3.11209  2.57957  3.08463  0.18160     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     28   3.35857  0.13687  3.41010  2.81184     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     29   2.91314  2.56174  3.10427  0.19399     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     30   3.25253  0.18463  3.30727  2.37201     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     31   2.92597  3.51246  0.12332  3.42391     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     32   3.54821  0.11728  3.59265  2.91207     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     33   0.13749  3.44790  2.78335  3.35766     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     34   3.00658  2.63037  3.15904  0.17910     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     35   3.48190  0.13058  3.52860  2.77550     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     36   2.92829  3.65209  0.11396  3.56553     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     37   0.13762  3.44739  2.78209  3.35712     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     38   3.16097  2.58108  3.20628  0.17267     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     39   2.93744  3.44619  0.13024  3.29028     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     40   0.12934  3.48051  2.86668  3.39184     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     41   0.12934  3.48051  2.86668  3.39184     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     42   2.89162  3.48850  0.12826  3.37134     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     43   0.13762  3.44739  2.78209  3.35712     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     44   0.13812  3.44543  2.77725  3.35505     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03477  4.06960  4.06960  1.46634  0.26236  1.09861  0.40547
+     45   3.50165  0.12654  3.54765  2.81479     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01753  4.05237        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_fivea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:56:00 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 501771485
+STATS LOCAL MSV       -7.3842  0.72813
+STATS LOCAL VITERBI   -8.0347  0.72813
+STATS LOCAL FORWARD   -3.2361  0.72813
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29099  1.34237  1.49789  1.42639
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_fiveb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:56:11 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3891266361
+STATS LOCAL MSV       -7.4753  0.72874
+STATS LOCAL VITERBI   -8.0224  0.72874
+STATS LOCAL FORWARD   -3.8081  0.72874
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23536  1.43285  1.49047  1.40497
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.15554  1.00938  2.23102  0.88601     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_fivec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:56:17 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 173117858
+STATS LOCAL MSV       -7.4090  0.72884
+STATS LOCAL VITERBI   -8.1631  0.72884
+STATS LOCAL FORWARD   -3.4359  0.72884
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33846  1.31931  1.47459  1.42064
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   1.88179  1.10717  1.04597  1.79675     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_fived_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:56:22 2012
+NSEQ  5
+EFFN  3.315430
+CKSUM 2978653859
+STATS LOCAL MSV       -8.0586  0.71933
+STATS LOCAL VITERBI   -7.5706  0.71933
+STATS LOCAL FORWARD   -4.2608  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33912  1.45202  1.52718  1.24939
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  0.00000        *
+      1   3.08626  2.59365  3.13451  0.17906      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      2   2.94591  3.58540  0.11742  3.48982      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      3   0.14220  3.37794  2.80041  3.27938      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      4   3.43043  0.13053  3.48000  2.82705      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      5   3.08626  2.59365  3.13451  0.17906      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      6   3.43043  0.13053  3.48000  2.82705      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      7   3.08626  2.59365  3.13451  0.17906      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      8   3.43043  0.13053  3.48000  2.82705      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      9   0.14220  3.37794  2.80041  3.27938      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     10   2.94591  3.58540  0.11742  3.48982     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     11   3.43043  0.13053  3.48000  2.82705     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     12   0.14220  3.37794  2.80041  3.27938     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     13   0.14220  3.37794  2.80041  3.27938     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     14   3.08626  2.59365  3.13451  0.17906     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     15   2.94591  3.58540  0.11742  3.48982     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     16   2.94591  3.58540  0.11742  3.48982     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     17   0.14220  3.37794  2.80041  3.27938     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     18   3.08626  2.59365  3.13451  0.17906     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     19   0.14220  3.37794  2.80041  3.27938     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     20   3.08626  2.59365  3.13451  0.17906     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     21   3.43043  0.13053  3.48000  2.82705     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     22   3.08626  2.59365  3.13451  0.17906     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     23   3.43043  0.13053  3.48000  2.82705     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     24   3.08626  2.59365  3.13451  0.17906     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     25   2.94591  3.58540  0.11742  3.48982     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     26   3.43043  0.13053  3.48000  2.82705     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     27   3.08626  2.59365  3.13451  0.17906     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     28   3.43043  0.13053  3.48000  2.82705     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     29   3.08626  2.59365  3.13451  0.17906     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     30   3.08626  2.59365  3.13451  0.17906     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     31   2.94591  3.58540  0.11742  3.48982     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     32   3.43043  0.13053  3.48000  2.82705     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     33   0.14220  3.37794  2.80041  3.27938     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     34   3.08626  2.59365  3.13451  0.17906     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     35   3.08626  2.59365  3.13451  0.17906     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     36   2.94591  3.58540  0.11742  3.48982     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     37   0.14220  3.37794  2.80041  3.27938     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     38   3.08626  2.59365  3.13451  0.17906     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     39   2.94591  3.58540  0.11742  3.48982     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     40   0.14220  3.37794  2.80041  3.27938     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     41   0.14220  3.37794  2.80041  3.27938     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     42   2.94591  3.58540  0.11742  3.48982     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     43   0.14220  3.37794  2.80041  3.27938     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     44   0.14220  3.37794  2.80041  3.27938     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     45   3.43043  0.13053  3.48000  2.82705     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01864  3.99184        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_fivee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:56:29 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1491573942
+STATS LOCAL MSV       -7.4671  0.72818
+STATS LOCAL VITERBI   -8.1834  0.72818
+STATS LOCAL FORWARD   -3.2586  0.72818
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.19248  1.28747  1.64165  1.48324
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
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+          1.38629  1.38629  1.38629  1.38629
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+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_fivef_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:56:33 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 984617909
+STATS LOCAL MSV       -7.5814  0.72836
+STATS LOCAL VITERBI   -8.2385  0.72836
+STATS LOCAL FORWARD   -3.3826  0.72836
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34307  1.39264  1.49794  1.32070
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
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+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_fiveg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:56:41 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3312256803
+STATS LOCAL MSV       -7.4483  0.72806
+STATS LOCAL VITERBI   -8.3980  0.72806
+STATS LOCAL FORWARD   -3.4369  0.72806
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45962  1.33786  1.37657  1.37506
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.57915  2.25909  2.64442  0.28946     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_fiveh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:56:46 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 4174493381
+STATS LOCAL MSV       -8.1279  0.72052
+STATS LOCAL VITERBI   -7.7403  0.72052
+STATS LOCAL FORWARD   -4.4656  0.72052
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40219  1.52691  1.37723  1.25717
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   2.97980  2.52563  3.03204  0.19727      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.86982  3.47591  0.13017  3.36931     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_fivei_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:56:52 2012
+NSEQ  210
+EFFN  4.367523
+CKSUM 2838594260
+STATS LOCAL MSV       -7.0126  0.71932
+STATS LOCAL VITERBI   -7.5941  0.71932
+STATS LOCAL FORWARD   -4.2002  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40037  1.31676  1.37571  1.45743
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  0.00000        *
+      1   2.06832  0.85930  1.87569  1.21438      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+      2   2.21347  3.41443  0.19689  3.31032      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+      3   0.10951  3.66353  2.98433  3.59304      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+      4   3.75517  0.09755  3.79001  3.05864      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+      5   3.38437  2.78305  3.42094  0.13746      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+      6   3.75517  0.09755  3.79001  3.05864      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+      7   3.20676  2.31317  3.25195  0.19618      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+      8   3.66275  0.11496  3.70176  2.84291      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+      9   2.49528  3.58698  0.15135  3.49677      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     10   0.89228  2.68555  0.81279  2.54492     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     11   3.75517  0.09755  3.79001  3.05864     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     12   0.10951  3.66353  2.98433  3.59304     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     13   0.10951  3.66353  2.98433  3.59304     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     14   2.82816  1.56588  2.88915  0.39104     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     15   2.95597  3.80384  0.10338  3.73372     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     16   2.85847  3.54253  0.12043  3.60575     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     17   0.10951  3.66353  2.98433  3.59304     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     18   3.38437  2.78305  3.42094  0.13746     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     19   0.10951  3.66353  2.98433  3.59304     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     20   3.38437  2.78305  3.42094  0.13746     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     21   3.75517  0.09755  3.79001  3.05864     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     22   3.38437  2.78305  3.42094  0.13746     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     23   2.22540  0.66248  2.48298  1.22789     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     24   3.13660  3.86684  0.09067  3.80190     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     25   3.04672  3.52420  0.11688  3.40166     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     26   3.75517  0.09755  3.79001  3.05864     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     27   3.38437  2.78305  3.42094  0.13746     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     28   3.75517  0.09755  3.79001  3.05864     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     29   3.34206  2.65762  3.38062  0.15025     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     30   2.92715  0.35120  2.99176  1.64813     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     31   3.13660  3.86684  0.09067  3.80190     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     32   3.75517  0.09755  3.79001  3.05864     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     33   0.12502  3.60124  2.80014  3.52587     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     34   3.38437  2.78305  3.42094  0.13746     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     35   3.67538  0.11251  3.71382  2.87022     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     36   3.13660  3.86684  0.09067  3.80190     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     37   0.10951  3.66353  2.98433  3.59304     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     38   3.38437  2.78305  3.42094  0.13746     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     39   3.13660  3.86684  0.09067  3.80190     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     40   0.10951  3.66353  2.98433  3.59304     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     41   0.10951  3.66353  2.98433  3.59304     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     42   3.13660  3.86684  0.09067  3.80190     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     43   0.10951  3.66353  2.98433  3.59304     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     44   1.34862  2.84454  0.48510  2.70893     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03093  4.18472  4.18472  1.46634  0.26236  1.09861  0.40547
+     45   3.67026  0.11350  3.70893  2.85909     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01558  4.16938        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_fivej_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:56:56 2012
+NSEQ  33
+EFFN  3.258911
+CKSUM 3363897177
+STATS LOCAL MSV       -7.9849  0.71934
+STATS LOCAL VITERBI   -7.6114  0.71934
+STATS LOCAL FORWARD   -4.3755  0.71934
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47461  1.45701  1.31474  1.31061
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  0.00000        *
+      1   3.06783  2.58191  3.11677  0.18206      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+      2   2.93308  3.56677  0.11948  3.46928      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+      3   0.14465  3.35963  2.78850  3.25935      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+      4   3.40931  0.13308  3.45978  2.81164      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+      5   3.06783  2.58191  3.11677  0.18206      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+      6   3.40931  0.13308  3.45978  2.81164      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+      7   3.40931  0.13308  3.45978  2.81164      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+      8   3.06783  2.58191  3.11677  0.18206      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+      9   2.93308  3.56677  0.11948  3.46928      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     10   2.93308  3.56677  0.11948  3.46928     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     11   3.40931  0.13308  3.45978  2.81164     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     12   0.14465  3.35963  2.78850  3.25935     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     13   0.14465  3.35963  2.78850  3.25935     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     14   3.06783  2.58191  3.11677  0.18206     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     15   2.93308  3.56677  0.11948  3.46928     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     16   2.93308  3.56677  0.11948  3.46928     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     17   0.14465  3.35963  2.78850  3.25935     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     18   3.06783  2.58191  3.11677  0.18206     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     19   0.14465  3.35963  2.78850  3.25935     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     20   3.06783  2.58191  3.11677  0.18206     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     21   3.40931  0.13308  3.45978  2.81164     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     22   3.06783  2.58191  3.11677  0.18206     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     23   3.06783  2.58191  3.11677  0.18206     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     24   2.93308  3.56677  0.11948  3.46928     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     25   2.93308  3.56677  0.11948  3.46928     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     26   3.40931  0.13308  3.45978  2.81164     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     27   3.06783  2.58191  3.11677  0.18206     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     28   3.40931  0.13308  3.45978  2.81164     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     29   3.06783  2.58191  3.11677  0.18206     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     30   3.40931  0.13308  3.45978  2.81164     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     31   2.93308  3.56677  0.11948  3.46928     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     32   3.06783  2.58191  3.11677  0.18206     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     33   2.93308  3.56677  0.11948  3.46928     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     34   3.06783  2.58191  3.11677  0.18206     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     35   3.40931  0.13308  3.45978  2.81164     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     36   2.93308  3.56677  0.11948  3.46928     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     37   0.14465  3.35963  2.78850  3.25935     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     38   3.06783  2.58191  3.11677  0.18206     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     39   2.93308  3.56677  0.11948  3.46928     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     40   0.14465  3.35963  2.78850  3.25935     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     41   0.14465  3.35963  2.78850  3.25935     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     42   2.93308  3.56677  0.11948  3.46928     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     43   0.14465  3.35963  2.78850  3.25935     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     44   0.14465  3.35963  2.78850  3.25935     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03733  3.99983  3.99983  1.46634  0.26236  1.09861  0.40547
+     45   3.40931  0.13308  3.45978  2.81164     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01884  3.98135        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_fivek_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:57:01 2012
+NSEQ  50
+EFFN  3.543091
+CKSUM 2127064808
+STATS LOCAL MSV       -7.5080  0.71932
+STATS LOCAL VITERBI   -7.6308  0.71932
+STATS LOCAL FORWARD   -3.8861  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39994  1.20823  1.38023  1.59384
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  0.00000        *
+      1   2.86575  0.31993  2.93116  1.81078      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+      2   2.99441  3.65633  0.10993  3.56823      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+      3   0.13323  3.44830  2.84594  3.35649      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+      4   3.51133  0.12125  3.55740  2.88560      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+      5   3.15782  2.63909  3.20331  0.16791      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+      6   3.51133  0.12125  3.55740  2.88560      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+      7   3.15782  2.63909  3.20331  0.16791      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+      8   3.51133  0.12125  3.55740  2.88560      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+      9   2.99441  3.65633  0.10993  3.56823      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     10   2.99441  3.65633  0.10993  3.56823     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     11   3.51133  0.12125  3.55740  2.88560     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     12   0.13323  3.44830  2.84594  3.35649     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     13   0.13323  3.44830  2.84594  3.35649     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     14   3.51133  0.12125  3.55740  2.88560     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     15   2.99441  3.65633  0.10993  3.56823     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     16   2.99441  3.65633  0.10993  3.56823     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     17   0.13323  3.44830  2.84594  3.35649     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     18   3.15782  2.63909  3.20331  0.16791     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     19   0.13323  3.44830  2.84594  3.35649     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     20   3.15782  2.63909  3.20331  0.16791     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     21   3.51133  0.12125  3.55740  2.88560     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     22   3.15782  2.63909  3.20331  0.16791     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     23   3.51133  0.12125  3.55740  2.88560     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     24   2.99441  3.65633  0.10993  3.56823     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     25   2.99441  3.65633  0.10993  3.56823     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     26   3.51133  0.12125  3.55740  2.88560     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     27   2.76636  1.79629  2.82691  0.33968     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     28   3.51133  0.12125  3.55740  2.88560     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     29   3.15782  2.63909  3.20331  0.16791     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     30   3.35467  0.15484  3.40598  2.58554     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     31   2.46606  3.38987  0.16971  3.28447     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     32   3.23974  0.18362  3.29488  2.39143     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     33   3.23974  0.18362  3.29488  2.39143     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     34   0.16997  3.24763  2.75938  2.91677     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     35   3.24462  0.16325  3.04612  2.74743     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     36   2.99441  3.65633  0.10993  3.56823     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     37   0.13323  3.44830  2.84594  3.35649     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     38   3.15782  2.63909  3.20331  0.16791     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     39   2.99441  3.65633  0.10993  3.56823     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     40   0.13323  3.44830  2.84594  3.35649     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     41   0.13323  3.44830  2.84594  3.35649     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     42   2.99441  3.65633  0.10993  3.56823     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     43   0.13323  3.44830  2.84594  3.35649     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     44   0.13323  3.44830  2.84594  3.35649     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03545  4.05058  4.05058  1.46634  0.26236  1.09861  0.40547
+     45   2.62759  1.52536  2.69282  0.44236     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01788  4.03302        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_ninea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:12:28 2012
+NSEQ  18
+EFFN  3.229980
+CKSUM 3069628549
+STATS LOCAL MSV       -8.0656  0.71932
+STATS LOCAL VITERBI   -7.7526  0.71932
+STATS LOCAL FORWARD   -4.0010  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40657  1.32294  1.38185  1.43736
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  0.00000        *
+      1   3.39834  0.13443  3.44926  2.80362      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+      2   2.92638  3.55708  0.12057  3.45859      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+      3   0.14594  3.35012  2.78230  3.24895      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+      4   3.39834  0.13443  3.44926  2.80362      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+      5   3.05828  2.57583  3.10759  0.18364      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+      6   3.39834  0.13443  3.44926  2.80362      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+      7   3.05828  2.57583  3.10759  0.18364      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+      8   3.05828  2.57583  3.10759  0.18364      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+      9   2.92638  3.55708  0.12057  3.45859      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     10   2.92638  3.55708  0.12057  3.45859     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     11   3.39834  0.13443  3.44926  2.80362     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     12   0.14594  3.35012  2.78230  3.24895     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     13   0.14594  3.35012  2.78230  3.24895     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     14   3.39834  0.13443  3.44926  2.80362     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     15   2.92638  3.55708  0.12057  3.45859     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     16   2.92638  3.55708  0.12057  3.45859     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     17   0.14594  3.35012  2.78230  3.24895     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     18   3.05828  2.57583  3.10759  0.18364     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     19   0.14594  3.35012  2.78230  3.24895     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     20   3.05828  2.57583  3.10759  0.18364     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     21   3.39834  0.13443  3.44926  2.80362     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     22   3.05828  2.57583  3.10759  0.18364     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     23   3.05828  2.57583  3.10759  0.18364     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     24   2.92638  3.55708  0.12057  3.45859     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     25   2.92638  3.55708  0.12057  3.45859     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     26   3.39834  0.13443  3.44926  2.80362     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     27   3.05828  2.57583  3.10759  0.18364     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     28   3.39834  0.13443  3.44926  2.80362     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     29   3.05828  2.57583  3.10759  0.18364     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     30   3.39834  0.13443  3.44926  2.80362     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     31   2.92638  3.55708  0.12057  3.45859     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     32   3.39834  0.13443  3.44926  2.80362     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     33   0.14594  3.35012  2.78230  3.24895     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     34   3.05828  2.57583  3.10759  0.18364     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     35   3.39834  0.13443  3.44926  2.80362     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     36   2.92638  3.55708  0.12057  3.45859     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     37   0.14594  3.35012  2.78230  3.24895     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     38   3.05828  2.57583  3.10759  0.18364     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     39   2.92638  3.55708  0.12057  3.45859     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     40   0.14594  3.35012  2.78230  3.24895     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     41   0.14594  3.35012  2.78230  3.24895     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     42   2.92638  3.55708  0.12057  3.45859     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     43   0.14594  3.35012  2.78230  3.24895     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     44   0.14594  3.35012  2.78230  3.24895     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
+     45   3.39834  0.13443  3.44926  2.80362     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01894  3.97593        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_nineb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:12:35 2012
+NSEQ  5
+EFFN  3.227539
+CKSUM 4226317241
+STATS LOCAL MSV       -7.9655  0.71933
+STATS LOCAL VITERBI   -7.5560  0.71933
+STATS LOCAL FORWARD   -4.1456  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40657  1.32285  1.38184  1.43748
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  0.00000        *
+      1   3.39741  0.13455  3.44837  2.80294      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      2   2.92582  3.55626  0.12066  3.45768      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      3   0.14605  3.34931  2.78177  3.24806      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      4   3.39741  0.13455  3.44837  2.80294      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      5   3.05748  2.57532  3.10682  0.18378      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      6   3.39741  0.13455  3.44837  2.80294      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      7   3.05748  2.57532  3.10682  0.18378      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      8   3.39741  0.13455  3.44837  2.80294      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+      9   2.92582  3.55626  0.12066  3.45768      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     10   2.92582  3.55626  0.12066  3.45768     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     11   3.39741  0.13455  3.44837  2.80294     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     12   0.14605  3.34931  2.78177  3.24806     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     13   0.14605  3.34931  2.78177  3.24806     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     14   3.39741  0.13455  3.44837  2.80294     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     15   2.92582  3.55626  0.12066  3.45768     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     16   2.92582  3.55626  0.12066  3.45768     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     17   0.14605  3.34931  2.78177  3.24806     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     18   3.05748  2.57532  3.10682  0.18378     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     19   0.14605  3.34931  2.78177  3.24806     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     20   3.05748  2.57532  3.10682  0.18378     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     21   3.39741  0.13455  3.44837  2.80294     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     22   3.05748  2.57532  3.10682  0.18378     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     23   3.05748  2.57532  3.10682  0.18378     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     24   2.92582  3.55626  0.12066  3.45768     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     25   2.92582  3.55626  0.12066  3.45768     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     26   3.39741  0.13455  3.44837  2.80294     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     27   3.05748  2.57532  3.10682  0.18378     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     28   3.39741  0.13455  3.44837  2.80294     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     29   3.05748  2.57532  3.10682  0.18378     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     30   3.05748  2.57532  3.10682  0.18378     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     31   2.92582  3.55626  0.12066  3.45768     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     32   3.39741  0.13455  3.44837  2.80294     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     33   0.14605  3.34931  2.78177  3.24806     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     34   3.05748  2.57532  3.10682  0.18378     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     35   3.39741  0.13455  3.44837  2.80294     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     36   2.92582  3.55626  0.12066  3.45768     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     37   0.14605  3.34931  2.78177  3.24806     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     38   3.05748  2.57532  3.10682  0.18378     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     39   2.92582  3.55626  0.12066  3.45768     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     40   0.14605  3.34931  2.78177  3.24806     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     41   0.14605  3.34931  2.78177  3.24806     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     42   2.92582  3.55626  0.12066  3.45768     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     43   0.14605  3.34931  2.78177  3.24806     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     44   0.14605  3.34931  2.78177  3.24806     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
+     45   3.39741  0.13455  3.44837  2.80294     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01895  3.97547        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_ninec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:13:12 2012
+NSEQ  8
+EFFN  3.324219
+CKSUM 3298544435
+STATS LOCAL MSV       -8.1167  0.71931
+STATS LOCAL VITERBI   -7.6959  0.71931
+STATS LOCAL FORWARD   -3.8829  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40353  1.30597  1.37945  1.46255
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  0.00000        *
+      1   3.43368  0.13014  3.48311  2.82941      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      2   2.94787  3.58825  0.11710  3.49298      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      3   0.14183  3.38075  2.80224  3.28247      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      4   3.43368  0.13014  3.48311  2.82941      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      5   3.08911  2.59546  3.13724  0.17860      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      6   3.43368  0.13014  3.48311  2.82941      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      7   3.08911  2.59546  3.13724  0.17860      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      8   3.43368  0.13014  3.48311  2.82941      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+      9   2.94787  3.58825  0.11710  3.49298      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     10   2.94787  3.58825  0.11710  3.49298     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     11   3.43368  0.13014  3.48311  2.82941     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     12   0.14183  3.38075  2.80224  3.28247     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     13   0.14183  3.38075  2.80224  3.28247     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     14   3.43368  0.13014  3.48311  2.82941     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     15   2.94787  3.58825  0.11710  3.49298     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     16   2.94787  3.58825  0.11710  3.49298     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     17   0.14183  3.38075  2.80224  3.28247     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     18   3.08911  2.59546  3.13724  0.17860     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     19   0.14183  3.38075  2.80224  3.28247     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     20   3.08911  2.59546  3.13724  0.17860     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     21   3.43368  0.13014  3.48311  2.82941     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     22   3.08911  2.59546  3.13724  0.17860     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     23   2.46372  1.24860  2.53351  0.60039     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     24   2.94787  3.58825  0.11710  3.49298     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     25   2.94787  3.58825  0.11710  3.49298     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     26   3.08911  2.59546  3.13724  0.17860     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     27   3.08911  2.59546  3.13724  0.17860     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     28   3.43368  0.13014  3.48311  2.82941     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     29   3.08911  2.59546  3.13724  0.17860     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     30   3.43368  0.13014  3.48311  2.82941     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     31   2.94787  3.58825  0.11710  3.49298     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     32   3.43368  0.13014  3.48311  2.82941     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     33   0.14183  3.38075  2.80224  3.28247     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     34   3.08911  2.59546  3.13724  0.17860     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     35   3.43368  0.13014  3.48311  2.82941     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     36   2.94787  3.58825  0.11710  3.49298     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     37   0.14183  3.38075  2.80224  3.28247     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     38   3.08911  2.59546  3.13724  0.17860     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     39   2.94787  3.58825  0.11710  3.49298     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     40   0.14183  3.38075  2.80224  3.28247     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     41   0.14183  3.38075  2.80224  3.28247     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     42   2.94787  3.58825  0.11710  3.49298     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     43   0.14183  3.38075  2.80224  3.28247     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     44   0.14183  3.38075  2.80224  3.28247     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
+     45   3.43368  0.13014  3.48311  2.82941     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01861  3.99346        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_nined_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:13:19 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1082156861
+STATS LOCAL MSV       -7.3499  0.72787
+STATS LOCAL VITERBI   -8.1292  0.72787
+STATS LOCAL FORWARD   -3.4541  0.72787
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45932  1.34452  1.31900  1.42905
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_ninee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:13:26 2012
+NSEQ  6
+EFFN  3.231445
+CKSUM 4098161730
+STATS LOCAL MSV       -8.0790  0.71932
+STATS LOCAL VITERBI   -7.6106  0.71932
+STATS LOCAL FORWARD   -4.0689  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40654  1.32502  1.38182  1.43509
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  0.00000        *
+      1   3.05877  2.57614  3.10806  0.18356      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      2   2.92673  3.55757  0.12052  3.45913      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      3   0.14587  3.35060  2.78262  3.24948      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      4   3.39890  0.13436  3.44980  2.80403      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      5   3.05877  2.57614  3.10806  0.18356      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      6   3.39890  0.13436  3.44980  2.80403      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      7   3.05877  2.57614  3.10806  0.18356      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      8   3.39890  0.13436  3.44980  2.80403      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+      9   2.92673  3.55757  0.12052  3.45913      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     10   2.92673  3.55757  0.12052  3.45913     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     11   3.39890  0.13436  3.44980  2.80403     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     12   0.14587  3.35060  2.78262  3.24948     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     13   0.14587  3.35060  2.78262  3.24948     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     14   3.39890  0.13436  3.44980  2.80403     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     15   2.92673  3.55757  0.12052  3.45913     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     16   2.92673  3.55757  0.12052  3.45913     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     17   0.14587  3.35060  2.78262  3.24948     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     18   3.05877  2.57614  3.10806  0.18356     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     19   0.14587  3.35060  2.78262  3.24948     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     20   3.05877  2.57614  3.10806  0.18356     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     21   3.39890  0.13436  3.44980  2.80403     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     22   3.05877  2.57614  3.10806  0.18356     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     23   3.39890  0.13436  3.44980  2.80403     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     24   2.92673  3.55757  0.12052  3.45913     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     25   2.92673  3.55757  0.12052  3.45913     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     26   3.39890  0.13436  3.44980  2.80403     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     27   3.05877  2.57614  3.10806  0.18356     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     28   3.39890  0.13436  3.44980  2.80403     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     29   3.05877  2.57614  3.10806  0.18356     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     30   3.05877  2.57614  3.10806  0.18356     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     31   2.92673  3.55757  0.12052  3.45913     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     32   3.39890  0.13436  3.44980  2.80403     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     33   0.14587  3.35060  2.78262  3.24948     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     34   3.05877  2.57614  3.10806  0.18356     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     35   3.39890  0.13436  3.44980  2.80403     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     36   2.92673  3.55757  0.12052  3.45913     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     37   0.14587  3.35060  2.78262  3.24948     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     38   3.05877  2.57614  3.10806  0.18356     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     39   2.92673  3.55757  0.12052  3.45913     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     40   0.14587  3.35060  2.78262  3.24948     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     41   0.14587  3.35060  2.78262  3.24948     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     42   2.92673  3.55757  0.12052  3.45913     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     43   0.14587  3.35060  2.78262  3.24948     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     44   0.14587  3.35060  2.78262  3.24948     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
+     45   3.39890  0.13436  3.44980  2.80403     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01893  3.97621        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_ninef_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:13:31 2012
+NSEQ  10
+EFFN  3.325195
+CKSUM 4174405568
+STATS LOCAL MSV       -8.2243  0.71932
+STATS LOCAL VITERBI   -7.7459  0.71932
+STATS LOCAL FORWARD   -3.8937  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.37952  1.26100  1.37730  1.54801
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  0.00000        *
+      1   0.97492  2.14294  2.15833  0.94174      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      2   2.94809  3.58857  0.11707  3.49333      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      3   0.14179  3.38107  2.80245  3.28281      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      4   3.43404  0.13010  3.48346  2.82967      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      5   3.08942  2.59566  3.13755  0.17855      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      6   3.43404  0.13010  3.48346  2.82967      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      7   3.08942  2.59566  3.13755  0.17855      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      8   3.43404  0.13010  3.48346  2.82967      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+      9   2.94809  3.58857  0.11707  3.49333      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     10   2.94809  3.58857  0.11707  3.49333     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     11   3.43404  0.13010  3.48346  2.82967     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     12   0.14179  3.38107  2.80245  3.28281     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     13   0.14179  3.38107  2.80245  3.28281     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     14   3.43404  0.13010  3.48346  2.82967     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     15   2.94809  3.58857  0.11707  3.49333     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     16   2.94809  3.58857  0.11707  3.49333     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     17   0.14179  3.38107  2.80245  3.28281     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     18   3.08942  2.59566  3.13755  0.17855     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     19   0.14179  3.38107  2.80245  3.28281     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     20   3.08942  2.59566  3.13755  0.17855     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     21   3.43404  0.13010  3.48346  2.82967     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     22   3.08942  2.59566  3.13755  0.17855     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     23   3.43404  0.13010  3.48346  2.82967     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     24   2.94809  3.58857  0.11707  3.49333     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     25   2.94809  3.58857  0.11707  3.49333     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     26   3.43404  0.13010  3.48346  2.82967     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     27   3.08942  2.59566  3.13755  0.17855     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     28   3.43404  0.13010  3.48346  2.82967     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     29   3.08942  2.59566  3.13755  0.17855     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     30   3.43404  0.13010  3.48346  2.82967     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     31   2.94809  3.58857  0.11707  3.49333     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     32   3.43404  0.13010  3.48346  2.82967     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     33   0.14179  3.38107  2.80245  3.28281     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     34   3.08942  2.59566  3.13755  0.17855     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     35   3.43404  0.13010  3.48346  2.82967     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     36   2.94809  3.58857  0.11707  3.49333     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     37   0.14179  3.38107  2.80245  3.28281     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     38   3.08942  2.59566  3.13755  0.17855     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     39   2.94809  3.58857  0.11707  3.49333     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     40   0.14179  3.38107  2.80245  3.28281     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     41   0.14179  3.38107  2.80245  3.28281     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     42   2.94809  3.58857  0.11707  3.49333     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     43   0.14179  3.38107  2.80245  3.28281     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     44   0.14179  3.38107  2.80245  3.28281     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01190  4.01190  1.46634  0.26236  1.09861  0.40547
+     45   3.43404  0.13010  3.48346  2.82967     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01860  3.99364        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_nineg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:13:36 2012
+NSEQ  25
+EFFN  3.213501
+CKSUM 1199603924
+STATS LOCAL MSV       -8.0844  0.71932
+STATS LOCAL VITERBI   -7.5542  0.71932
+STATS LOCAL FORWARD   -4.1984  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34047  1.32612  1.38036  1.50831
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99148  3.99148  1.46634  0.26236  0.00000        *
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+     45   3.39204  0.13522  3.44322  2.79900     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01900  3.97284        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_nineh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:13:41 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3988372655
+STATS LOCAL MSV       -7.3866  0.72804
+STATS LOCAL VITERBI   -8.1091  0.72804
+STATS LOCAL FORWARD   -3.4400  0.72804
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34404  1.34309  1.43461  1.42727
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
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+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_ninei_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:13:47 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3812300370
+STATS LOCAL MSV       -7.4061  0.72764
+STATS LOCAL VITERBI   -8.1319  0.72764
+STATS LOCAL FORWARD   -3.4528  0.72764
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.46216  1.24196  1.32139  1.54796
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_ninej_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:13:53 2012
+NSEQ  29
+EFFN  3.189575
+CKSUM 2074168776
+STATS LOCAL MSV       -8.0345  0.71933
+STATS LOCAL VITERBI   -7.6855  0.71933
+STATS LOCAL FORWARD   -3.9179  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34160  1.26671  1.38128  1.58202
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  0.00000        *
+      1   3.38283  0.13637  3.43439  2.79225      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+      2   2.91688  3.54335  0.12214  3.44346      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+      3   0.14779  3.33669  2.77353  3.23426      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+      4   3.38283  0.13637  3.43439  2.79225      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+      5   3.04483  2.56726  3.09465  0.18590      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+      6   3.38283  0.13637  3.43439  2.79225      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+      7   3.04483  2.56726  3.09465  0.18590      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+      8   3.38283  0.13637  3.43439  2.79225      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+      9   2.91688  3.54335  0.12214  3.44346      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     10   2.91688  3.54335  0.12214  3.44346     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     11   3.38283  0.13637  3.43439  2.79225     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     12   0.14779  3.33669  2.77353  3.23426     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     13   0.14779  3.33669  2.77353  3.23426     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     14   3.38283  0.13637  3.43439  2.79225     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     15   2.91688  3.54335  0.12214  3.44346     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     16   2.91688  3.54335  0.12214  3.44346     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     17   0.14779  3.33669  2.77353  3.23426     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     18   3.04483  2.56726  3.09465  0.18590     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     19   0.14779  3.33669  2.77353  3.23426     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     20   3.04483  2.56726  3.09465  0.18590     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     21   3.38283  0.13637  3.43439  2.79225     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     22   3.04483  2.56726  3.09465  0.18590     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     23   3.38283  0.13637  3.43439  2.79225     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     24   2.91688  3.54335  0.12214  3.44346     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     25   2.91688  3.54335  0.12214  3.44346     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     26   3.38283  0.13637  3.43439  2.79225     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     27   3.04483  2.56726  3.09465  0.18590     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     28   3.38283  0.13637  3.43439  2.79225     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     29   0.14779  3.33669  2.77353  3.23426     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     30   3.04483  2.56726  3.09465  0.18590     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     31   2.91688  3.54335  0.12214  3.44346     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     32   3.38283  0.13637  3.43439  2.79225     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     33   0.14779  3.33669  2.77353  3.23426     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     34   3.04483  2.56726  3.09465  0.18590     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     35   3.38283  0.13637  3.43439  2.79225     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     36   2.91688  3.54335  0.12214  3.44346     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     37   0.14779  3.33669  2.77353  3.23426     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     38   3.04483  2.56726  3.09465  0.18590     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     39   2.91688  3.54335  0.12214  3.44346     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     40   0.14779  3.33669  2.77353  3.23426     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     41   0.14779  3.33669  2.77353  3.23426     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     42   2.91688  3.54335  0.12214  3.44346     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     43   0.14779  3.33669  2.77353  3.23426     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     44   0.14779  3.33669  2.77353  3.23426     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98705  3.98705  1.46634  0.26236  1.09861  0.40547
+     45   3.38283  0.13637  3.43439  2.79225     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01909  3.96832        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_ninek_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:13:58 2012
+NSEQ  10
+EFFN  3.383789
+CKSUM 3321732590
+STATS LOCAL MSV       -7.5222  0.71932
+STATS LOCAL VITERBI   -7.6007  0.71932
+STATS LOCAL FORWARD   -4.1158  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39575  1.33634  1.39319  1.42186
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  0.00000        *
+      1   3.10820  2.60760  3.15560  0.17555      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      2   2.96099  3.60737  0.11504  3.51408      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      3   0.13936  3.39963  2.81449  3.30313      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      4   3.45541  0.12758  3.50392  2.84521      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      5   3.10820  2.60760  3.15560  0.17555      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      6   3.45541  0.12758  3.50392  2.84521      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      7   3.10820  2.60760  3.15560  0.17555      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      8   3.45541  0.12758  3.50392  2.84521      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+      9   2.96099  3.60737  0.11504  3.51408      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     10   2.96099  3.60737  0.11504  3.51408     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     11   3.45541  0.12758  3.50392  2.84521     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     12   0.13936  3.39963  2.81449  3.30313     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     13   0.13936  3.39963  2.81449  3.30313     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     14   3.45541  0.12758  3.50392  2.84521     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     15   2.96099  3.60737  0.11504  3.51408     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     16   2.96099  3.60737  0.11504  3.51408     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     17   0.13936  3.39963  2.81449  3.30313     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     18   3.10820  2.60760  3.15560  0.17555     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     19   0.13936  3.39963  2.81449  3.30313     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     20   3.10820  2.60760  3.15560  0.17555     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     21   3.45541  0.12758  3.50392  2.84521     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     22   3.10820  2.60760  3.15560  0.17555     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     23   3.45541  0.12758  3.50392  2.84521     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     24   2.96099  3.60737  0.11504  3.51408     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     25   2.96099  3.60737  0.11504  3.51408     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     26   3.45541  0.12758  3.50392  2.84521     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     27   3.10820  2.60760  3.15560  0.17555     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     28   3.45541  0.12758  3.50392  2.84521     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     29   3.10820  2.60760  3.15560  0.17555     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     30   3.10820  2.60760  3.15560  0.17555     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     31   2.96099  3.60737  0.11504  3.51408     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     32   3.45541  0.12758  3.50392  2.84521     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     33   0.13936  3.39963  2.81449  3.30313     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     34   3.10820  2.60760  3.15560  0.17555     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     35   3.45541  0.12758  3.50392  2.84521     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     36   2.96099  3.60737  0.11504  3.51408     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     37   0.13936  3.39963  2.81449  3.30313     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     38   3.10820  2.60760  3.15560  0.17555     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     39   2.96099  3.60737  0.11504  3.51408     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     40   0.13936  3.39963  2.81449  3.30313     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     41   0.13936  3.39963  2.81449  3.30313     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     42   1.86508  2.96676  0.30783  2.83696     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     43   0.13936  3.39963  2.81449  3.30313     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     44   0.13936  3.39963  2.81449  3.30313     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03648  4.02245  4.02245  1.46634  0.26236  1.09861  0.40547
+     45   2.76591  0.36141  2.83341  1.70606     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01840  4.00438        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_ninel_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:14:04 2012
+NSEQ  27
+EFFN  3.318970
+CKSUM 640933778
+STATS LOCAL MSV       -7.9871  0.71932
+STATS LOCAL VITERBI   -7.6291  0.71932
+STATS LOCAL FORWARD   -4.2511  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40354  1.38599  1.39206  1.36401
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  0.00000        *
+      1   3.08741  2.59438  3.13561  0.17887      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+      2   2.94670  3.58655  0.11729  3.49109      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+      3   0.14205  3.37907  2.80115  3.28063      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+      4   3.43174  0.13037  3.48126  2.82800      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+      5   3.08741  2.59438  3.13561  0.17887      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+      6   3.43174  0.13037  3.48126  2.82800      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+      7   3.08741  2.59438  3.13561  0.17887      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+      8   3.43174  0.13037  3.48126  2.82800      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+      9   2.94670  3.58655  0.11729  3.49109      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     10   2.54971  2.86852  0.27680  2.23581     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     11   3.43174  0.13037  3.48126  2.82800     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     12   0.14205  3.37907  2.80115  3.28063     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     13   0.14205  3.37907  2.80115  3.28063     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     14   3.08741  2.59438  3.13561  0.17887     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     15   2.94670  3.58655  0.11729  3.49109     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     16   2.94670  3.58655  0.11729  3.49109     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     17   0.14205  3.37907  2.80115  3.28063     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     18   3.08741  2.59438  3.13561  0.17887     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     19   0.14205  3.37907  2.80115  3.28063     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     20   3.08741  2.59438  3.13561  0.17887     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     21   3.43174  0.13037  3.48126  2.82800     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     22   3.08741  2.59438  3.13561  0.17887     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     23   3.43174  0.13037  3.48126  2.82800     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     24   2.94670  3.58655  0.11729  3.49109     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     25   2.94670  3.58655  0.11729  3.49109     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     26   3.43174  0.13037  3.48126  2.82800     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     27   3.08741  2.59438  3.13561  0.17887     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     28   3.43174  0.13037  3.48126  2.82800     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     29   3.08741  2.59438  3.13561  0.17887     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     30   3.08741  2.59438  3.13561  0.17887     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     31   2.94670  3.58655  0.11729  3.49109     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     32   3.43174  0.13037  3.48126  2.82800     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     33   0.14205  3.37907  2.80115  3.28063     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     34   3.08741  2.59438  3.13561  0.17887     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     35   3.43174  0.13037  3.48126  2.82800     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     36   2.94670  3.58655  0.11729  3.49109     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     37   0.14205  3.37907  2.80115  3.28063     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     38   3.08741  2.59438  3.13561  0.17887     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     39   2.94670  3.58655  0.11729  3.49109     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     40   0.14205  3.37907  2.80115  3.28063     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     41   0.14205  3.37907  2.80115  3.28063     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     42   2.94670  3.58655  0.11729  3.49109     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     43   0.14205  3.37907  2.80115  3.28063     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     44   0.14205  3.37907  2.80115  3.28063     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03691  4.01078  4.01078  1.46634  0.26236  1.09861  0.40547
+     45   3.43174  0.13037  3.48126  2.82800     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01863  3.99249        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_ninem_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:14:09 2012
+NSEQ  8
+EFFN  3.207031
+CKSUM 388308972
+STATS LOCAL MSV       -8.1606  0.71932
+STATS LOCAL VITERBI   -7.7611  0.71932
+STATS LOCAL FORWARD   -4.0593  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40764  1.26351  1.38278  1.50624
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  0.00000        *
+      1   3.38956  0.13553  3.44084  2.79718      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+      2   2.92101  3.54931  0.12145  3.45003      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+      3   0.14698  3.34251  2.77733  3.24063      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+      4   3.38956  0.13553  3.44084  2.79718      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+      5   3.05066  2.57097  3.10026  0.18492      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+      6   3.38956  0.13553  3.44084  2.79718      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+      7   3.05066  2.57097  3.10026  0.18492      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+      8   3.38956  0.13553  3.44084  2.79718      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+      9   2.92101  3.54931  0.12145  3.45003      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     10   2.92101  3.54931  0.12145  3.45003     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     11   3.38956  0.13553  3.44084  2.79718     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     12   0.14698  3.34251  2.77733  3.24063     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     13   0.14698  3.34251  2.77733  3.24063     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     14   3.05066  2.57097  3.10026  0.18492     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     15   2.92101  3.54931  0.12145  3.45003     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     16   2.92101  3.54931  0.12145  3.45003     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     17   0.14698  3.34251  2.77733  3.24063     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     18   3.05066  2.57097  3.10026  0.18492     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     19   0.14698  3.34251  2.77733  3.24063     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     20   3.05066  2.57097  3.10026  0.18492     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     21   3.38956  0.13553  3.44084  2.79718     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     22   3.05066  2.57097  3.10026  0.18492     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     23   3.38956  0.13553  3.44084  2.79718     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     24   2.92101  3.54931  0.12145  3.45003     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     25   2.92101  3.54931  0.12145  3.45003     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     26   3.38956  0.13553  3.44084  2.79718     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     27   3.05066  2.57097  3.10026  0.18492     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     28   3.38956  0.13553  3.44084  2.79718     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     29   3.05066  2.57097  3.10026  0.18492     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     30   3.38956  0.13553  3.44084  2.79718     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     31   2.92101  3.54931  0.12145  3.45003     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     32   3.38956  0.13553  3.44084  2.79718     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     33   0.14698  3.34251  2.77733  3.24063     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     34   3.05066  2.57097  3.10026  0.18492     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     35   3.38956  0.13553  3.44084  2.79718     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     36   2.92101  3.54931  0.12145  3.45003     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     37   0.14698  3.34251  2.77733  3.24063     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     38   3.05066  2.57097  3.10026  0.18492     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     39   2.92101  3.54931  0.12145  3.45003     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     40   0.14698  3.34251  2.77733  3.24063     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     41   0.14698  3.34251  2.77733  3.24063     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     42   2.92101  3.54931  0.12145  3.45003     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     43   0.14698  3.34251  2.77733  3.24063     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     44   0.14698  3.34251  2.77733  3.24063     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
+     45   3.38956  0.13553  3.44084  2.79718     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01902  3.97162        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_ninen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:14:13 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 194503138
+STATS LOCAL MSV       -7.4789  0.72807
+STATS LOCAL VITERBI   -8.2229  0.72807
+STATS LOCAL FORWARD   -3.6133  0.72807
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39870  1.39791  1.37392  1.37493
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_nineo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:14:18 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3592650123
+STATS LOCAL MSV       -7.9344  0.72076
+STATS LOCAL VITERBI   -7.6721  0.72076
+STATS LOCAL FORWARD   -3.7518  0.72076
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26182  1.31519  1.42658  1.56874
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   1.21118  1.33798  1.26855  1.84174      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   3.30705  0.14631  3.36166  2.73626     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   0.15719  3.27118  2.73043  3.16274     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_ninep_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:14:24 2012
+NSEQ  12
+EFFN  3.190430
+CKSUM 2049545075
+STATS LOCAL MSV       -8.0345  0.71932
+STATS LOCAL VITERBI   -7.6858  0.71932
+STATS LOCAL FORWARD   -3.9181  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34160  1.26670  1.38129  1.58203
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  0.00000        *
+      1   3.38316  0.13633  3.43471  2.79249      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+      2   2.91709  3.54364  0.12210  3.44379      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+      3   0.14775  3.33697  2.77371  3.23457      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+      4   3.38316  0.13633  3.43471  2.79249      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+      5   3.04512  2.56744  3.09493  0.18585      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+      6   3.38316  0.13633  3.43471  2.79249      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+      7   3.04512  2.56744  3.09493  0.18585      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+      8   3.38316  0.13633  3.43471  2.79249      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+      9   2.91709  3.54364  0.12210  3.44379      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     10   2.91709  3.54364  0.12210  3.44379     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     11   3.38316  0.13633  3.43471  2.79249     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     12   0.14775  3.33697  2.77371  3.23457     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     13   0.14775  3.33697  2.77371  3.23457     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     14   3.38316  0.13633  3.43471  2.79249     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     15   2.91709  3.54364  0.12210  3.44379     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     16   2.91709  3.54364  0.12210  3.44379     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     17   0.14775  3.33697  2.77371  3.23457     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     18   3.04512  2.56744  3.09493  0.18585     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     19   0.14775  3.33697  2.77371  3.23457     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     20   3.04512  2.56744  3.09493  0.18585     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     21   3.38316  0.13633  3.43471  2.79249     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     22   3.04512  2.56744  3.09493  0.18585     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     23   3.38316  0.13633  3.43471  2.79249     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     24   2.91709  3.54364  0.12210  3.44379     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     25   2.91709  3.54364  0.12210  3.44379     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     26   3.38316  0.13633  3.43471  2.79249     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     27   3.04512  2.56744  3.09493  0.18585     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     28   3.38316  0.13633  3.43471  2.79249     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     29   0.14775  3.33697  2.77371  3.23457     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     30   3.04512  2.56744  3.09493  0.18585     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     31   2.91709  3.54364  0.12210  3.44379     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     32   3.38316  0.13633  3.43471  2.79249     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     33   0.14775  3.33697  2.77371  3.23457     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     34   3.04512  2.56744  3.09493  0.18585     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     35   3.38316  0.13633  3.43471  2.79249     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     36   2.91709  3.54364  0.12210  3.44379     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     37   0.14775  3.33697  2.77371  3.23457     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     38   3.04512  2.56744  3.09493  0.18585     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     39   2.91709  3.54364  0.12210  3.44379     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     40   0.14775  3.33697  2.77371  3.23457     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     41   0.14775  3.33697  2.77371  3.23457     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     42   2.91709  3.54364  0.12210  3.44379     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     43   0.14775  3.33697  2.77371  3.23457     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     44   0.14775  3.33697  2.77371  3.23457     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03781  3.98721  3.98721  1.46634  0.26236  1.09861  0.40547
+     45   3.38316  0.13633  3.43471  2.79249     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01908  3.96848        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_nineq_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:14:31 2012
+NSEQ  15
+EFFN  3.336182
+CKSUM 3271186430
+STATS LOCAL MSV       -8.0468  0.71932
+STATS LOCAL VITERBI   -7.6643  0.71932
+STATS LOCAL FORWARD   -4.0052  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33355  1.35898  1.37681  1.48212
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  0.00000        *
+      1   0.14133  3.38458  2.80473  3.28665      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+      2   2.95053  3.59213  0.11668  3.49725      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+      3   0.14133  3.38458  2.80473  3.28665      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+      4   3.43808  0.12962  3.48733  2.83261      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+      5   3.09296  2.59791  3.14095  0.17798      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+      6   3.43808  0.12962  3.48733  2.83261      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+      7   3.09296  2.59791  3.14095  0.17798      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+      8   3.43808  0.12962  3.48733  2.83261      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+      9   2.95053  3.59213  0.11668  3.49725      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     10   2.95053  3.59213  0.11668  3.49725     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     11   3.43808  0.12962  3.48733  2.83261     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     12   0.14133  3.38458  2.80473  3.28665     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     13   0.14133  3.38458  2.80473  3.28665     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     14   3.43808  0.12962  3.48733  2.83261     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     15   2.95053  3.59213  0.11668  3.49725     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     16   2.95053  3.59213  0.11668  3.49725     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     17   0.14133  3.38458  2.80473  3.28665     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     18   3.09296  2.59791  3.14095  0.17798     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     19   0.14133  3.38458  2.80473  3.28665     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     20   3.09296  2.59791  3.14095  0.17798     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     21   3.43808  0.12962  3.48733  2.83261     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     22   3.09296  2.59791  3.14095  0.17798     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     23   3.09296  2.59791  3.14095  0.17798     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     24   2.95053  3.59213  0.11668  3.49725     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     25   2.95053  3.59213  0.11668  3.49725     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     26   3.43808  0.12962  3.48733  2.83261     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     27   3.09296  2.59791  3.14095  0.17798     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     28   3.43808  0.12962  3.48733  2.83261     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     29   3.09296  2.59791  3.14095  0.17798     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     30   2.43538  0.73697  2.50788  1.04289     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     31   2.95053  3.59213  0.11668  3.49725     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     32   3.43808  0.12962  3.48733  2.83261     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     33   0.14133  3.38458  2.80473  3.28665     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     34   3.09296  2.59791  3.14095  0.17798     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     35   3.43808  0.12962  3.48733  2.83261     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     36   2.95053  3.59213  0.11668  3.49725     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     37   0.14133  3.38458  2.80473  3.28665     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     38   3.09296  2.59791  3.14095  0.17798     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     39   2.95053  3.59213  0.11668  3.49725     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     40   0.14133  3.38458  2.80473  3.28665     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     41   0.14133  3.38458  2.80473  3.28665     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     42   2.95053  3.59213  0.11668  3.49725     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     43   0.14133  3.38458  2.80473  3.28665     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     44   0.14133  3.38458  2.80473  3.28665     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01389  4.01389  1.46634  0.26236  1.09861  0.40547
+     45   3.43808  0.12962  3.48733  2.83261     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01857  3.99566        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_niner_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:14:40 2012
+NSEQ  1631
+EFFN  3.673956
+CKSUM 3384115276
+STATS LOCAL MSV       -7.6208  0.71933
+STATS LOCAL VITERBI   -7.6410  0.71933
+STATS LOCAL FORWARD   -3.9735  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.38082  1.26665  1.37302  1.54405
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  0.00000        *
+      1   2.37824  0.62590  2.43334  1.25609      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+      2   2.77685  3.58728  0.12807  3.49652      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+      3   0.12864  3.48642  2.87047  3.39832      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+      4   3.55496  0.11657  3.59909  2.91689      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+      5   3.19708  2.66398  3.24103  0.16214      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+      6   3.55496  0.11657  3.59909  2.91689      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+      7   3.10118  2.42316  3.14895  0.19423      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+      8   3.45468  0.13230  3.42439  2.81744      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+      9   3.02021  3.69433  0.10614  3.61032      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     10   2.92544  3.65523  0.11393  3.56912     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     11   3.45801  0.12993  3.39292  2.86926     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     12   0.13702  3.45284  2.78437  3.36310     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     13   0.12864  3.48642  2.87047  3.39832     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     14   3.50366  0.12675  3.54954  2.80967     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     15   3.02021  3.69433  0.10614  3.61032     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     16   3.02021  3.69433  0.10614  3.61032     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     17   0.12864  3.48642  2.87047  3.39832     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     18   3.19708  2.66398  3.24103  0.16214     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     19   0.12864  3.48642  2.87047  3.39832     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     20   3.19708  2.66398  3.24103  0.16214     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     21   3.55496  0.11657  3.59909  2.91689     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     22   3.19708  2.66398  3.24103  0.16214     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     23   3.23252  0.16301  3.36338  2.57256     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     24   2.98023  3.47991  0.11807  3.51415     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     25   3.02021  3.69433  0.10614  3.61032     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     26   3.50767  0.12594  3.55341  2.81776     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     27   3.19708  2.66398  3.24103  0.16214     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     28   3.55496  0.11657  3.59909  2.91689     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     29   1.49008  2.22189  2.28320  0.57220     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     30   2.48276  1.06693  2.55323  0.70402     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     31   2.92531  3.65518  0.11394  3.56906     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     32   3.55496  0.11657  3.59909  2.91689     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     33   0.12864  3.48642  2.87047  3.39832     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     34   3.19708  2.66398  3.24103  0.16214     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     35   3.55496  0.11657  3.59909  2.91689     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     36   3.02021  3.69433  0.10614  3.61032     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     37   0.12864  3.48642  2.87047  3.39832     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     38   3.19708  2.66398  3.24103  0.16214     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     39   3.02021  3.69433  0.10614  3.61032     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     40   0.12864  3.48642  2.87047  3.39832     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     41   0.12864  3.48642  2.87047  3.39832     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     42   3.02021  3.69433  0.10614  3.61032     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     43   0.12864  3.48642  2.87047  3.39832     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     44   0.12864  3.48642  2.87047  3.39832     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03464  4.07312  4.07312  1.46634  0.26236  1.09861  0.40547
+     45   3.55496  0.11657  3.59909  2.91689     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01747  4.05595        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_onea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:54:43 2012
+NSEQ  8
+EFFN  3.597656
+CKSUM 3069228844
+STATS LOCAL MSV       -7.7371  0.71932
+STATS LOCAL VITERBI   -7.6193  0.71932
+STATS LOCAL FORWARD   -4.1725  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.32040  1.29960  1.63507  1.32655
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  0.00000        *
+      1   3.17435  2.64957  3.21919  0.16545      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+      2   2.16721  0.30824  2.78013  2.42212      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+      3   0.13127  3.46439  2.85631  3.37414      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+      4   3.52976  0.11925  3.57502  2.89885      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+      5   3.17435  2.64957  3.21919  0.16545      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+      6   3.17435  2.64957  3.21919  0.16545      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+      7   3.17435  2.64957  3.21919  0.16545      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+      8   3.52976  0.11925  3.57502  2.89885      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+      9   0.13127  3.46439  2.85631  3.37414      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     10   0.13127  3.46439  2.85631  3.37414     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     11   3.52976  0.11925  3.57502  2.89885     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     12   0.13127  3.46439  2.85631  3.37414     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     13   0.13127  3.46439  2.85631  3.37414     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     14   2.45394  0.94651  2.52541  0.80760     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     15   3.00534  3.67241  0.10830  3.58603     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     16   3.00534  3.67241  0.10830  3.58603     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     17   0.13127  3.46439  2.85631  3.37414     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     18   3.17435  2.64957  3.21919  0.16545     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     19   3.52976  0.11925  3.57502  2.89885     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     20   3.17435  2.64957  3.21919  0.16545     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     21   3.52976  0.11925  3.57502  2.89885     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     22   3.17435  2.64957  3.21919  0.16545     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     23   3.17435  2.64957  3.21919  0.16545     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     24   3.00534  3.67241  0.10830  3.58603     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     25   3.00534  3.67241  0.10830  3.58603     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     26   3.52976  0.11925  3.57502  2.89885     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     27   3.17435  2.64957  3.21919  0.16545     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     28   3.52976  0.11925  3.57502  2.89885     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     29   3.17435  2.64957  3.21919  0.16545     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     30   3.52976  0.11925  3.57502  2.89885     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     31   3.00534  3.67241  0.10830  3.58603     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     32   3.52976  0.11925  3.57502  2.89885     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     33   0.13127  3.46439  2.85631  3.37414     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     34   3.17435  2.64957  3.21919  0.16545     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     35   3.52976  0.11925  3.57502  2.89885     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     36   3.00534  3.67241  0.10830  3.58603     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     37   0.13127  3.46439  2.85631  3.37414     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     38   3.17435  2.64957  3.21919  0.16545     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     39   3.00534  3.67241  0.10830  3.58603     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     40   0.13127  3.46439  2.85631  3.37414     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     41   0.13127  3.46439  2.85631  3.37414     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     42   1.68040  2.89345  0.36377  2.76041     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     43   0.13127  3.46439  2.85631  3.37414     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     44   0.13127  3.46439  2.85631  3.37414     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03511  4.06004  4.06004  1.46634  0.26236  1.09861  0.40547
+     45   3.52976  0.11925  3.57502  2.89885     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01771  4.04264        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_oneb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:54:52 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2894283180
+STATS LOCAL MSV       -8.1544  0.72049
+STATS LOCAL VITERBI   -7.7198  0.72049
+STATS LOCAL FORWARD   -4.0031  0.72049
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40519  1.31757  1.52716  1.31028
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
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+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_onec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:55:02 2012
+NSEQ  44
+EFFN  3.649658
+CKSUM 2327022651
+STATS LOCAL MSV       -7.5756  0.71932
+STATS LOCAL VITERBI   -7.5779  0.71932
+STATS LOCAL FORWARD   -3.9495  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.21489  1.46036  1.53943  1.36023
+          1.38629  1.38629  1.38629  1.38629
+          0.03479  4.06897  4.06897  1.46634  0.26236  0.00000        *
+      1   0.29652  2.21705  2.54287  2.67327      1 - -
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+          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
+      2   0.12947  3.47946  2.86600  3.39068      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
+      3   0.12947  3.47946  2.86600  3.39068      3 - -
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+      4   3.54700  0.11741  3.59149  2.91120      4 - -
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+      5   3.18989  2.65942  3.23412  0.16318      5 - -
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+     43   0.12947  3.47946  2.86600  3.39068     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
+     44   0.12947  3.47946  2.86600  3.39068     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03479  4.06897  4.06897  1.46634  0.26236  1.09861  0.40547
+     45   3.54700  0.11741  3.59149  2.91120     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01755  4.05173        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:57:27 2012
+NSEQ  33
+EFFN  3.307251
+CKSUM 3974060790
+STATS LOCAL MSV       -8.1230  0.71931
+STATS LOCAL VITERBI   -7.6737  0.71931
+STATS LOCAL FORWARD   -4.1389  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40155  1.34561  1.31245  1.49502
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  0.00000        *
+      1   2.94407  3.58273  0.11771  3.48688      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+      2   2.94407  3.58273  0.11771  3.48688      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+      3   0.14255  3.37531  2.79871  3.27650      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+      4   3.42740  0.13089  3.47710  2.82484      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+      5   3.08361  2.59196  3.13196  0.17948      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+      6   3.42740  0.13089  3.47710  2.82484      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+      7   3.42740  0.13089  3.47710  2.82484      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+      8   3.42740  0.13089  3.47710  2.82484      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+      9   2.94407  3.58273  0.11771  3.48688      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     10   0.14255  3.37531  2.79871  3.27650     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     11   3.42740  0.13089  3.47710  2.82484     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     12   0.14255  3.37531  2.79871  3.27650     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     13   0.14255  3.37531  2.79871  3.27650     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     14   3.08361  2.59196  3.13196  0.17948     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     15   2.94407  3.58273  0.11771  3.48688     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     16   2.94407  3.58273  0.11771  3.48688     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     17   0.14255  3.37531  2.79871  3.27650     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     18   3.08361  2.59196  3.13196  0.17948     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     19   0.14255  3.37531  2.79871  3.27650     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     20   3.08361  2.59196  3.13196  0.17948     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     21   3.42740  0.13089  3.47710  2.82484     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     22   3.08361  2.59196  3.13196  0.17948     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     23   3.08361  2.59196  3.13196  0.17948     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     24   2.94407  3.58273  0.11771  3.48688     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     25   2.94407  3.58273  0.11771  3.48688     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     26   3.42740  0.13089  3.47710  2.82484     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     27   3.08361  2.59196  3.13196  0.17948     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     28   3.42740  0.13089  3.47710  2.82484     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     29   3.08361  2.59196  3.13196  0.17948     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     30   2.65063  0.43216  2.72028  1.53976     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     31   2.67056  3.44980  0.14636  3.34717     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     32   3.42740  0.13089  3.47710  2.82484     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     33   0.14255  3.37531  2.79871  3.27650     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     34   3.08361  2.59196  3.13196  0.17948     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     35   3.42740  0.13089  3.47710  2.82484     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     36   2.94407  3.58273  0.11771  3.48688     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     37   0.14255  3.37531  2.79871  3.27650     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     38   3.08361  2.59196  3.13196  0.17948     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     39   2.94407  3.58273  0.11771  3.48688     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     40   0.14255  3.37531  2.79871  3.27650     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     41   0.14255  3.37531  2.79871  3.27650     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     42   2.94407  3.58273  0.11771  3.48688     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     43   0.14255  3.37531  2.79871  3.27650     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     44   2.94407  3.58273  0.11771  3.48688     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03699  4.00865  4.00865  1.46634  0.26236  1.09861  0.40547
+     45   3.42740  0.13089  3.47710  2.82484     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01867  3.99033        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:57:34 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 345249460
+STATS LOCAL MSV       -7.4451  0.72877
+STATS LOCAL VITERBI   -8.2827  0.72877
+STATS LOCAL FORWARD   -3.2802  0.72877
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27023  1.23254  1.61372  1.47606
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.92825  2.28391  0.95698  2.13014      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:57:45 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 984252909
+STATS LOCAL MSV       -7.6013  0.72797
+STATS LOCAL VITERBI   -8.1244  0.72797
+STATS LOCAL FORWARD   -3.5282  0.72797
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34254  1.39917  1.37271  1.43299
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevend_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:57:51 2012
+NSEQ  4
+EFFN  3.183594
+CKSUM 890420045
+STATS LOCAL MSV       -8.1260  0.71933
+STATS LOCAL VITERBI   -7.7591  0.71933
+STATS LOCAL FORWARD   -3.7309  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40872  1.20773  1.38372  1.57976
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  0.00000        *
+      1   3.38051  0.13666  3.43217  2.79055      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      2   2.91546  3.54130  0.12237  3.44120      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      3   0.14807  3.33468  2.77222  3.23207      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      4   3.38051  0.13666  3.43217  2.79055      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      5   3.04283  2.56598  3.09273  0.18624      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      6   3.38051  0.13666  3.43217  2.79055      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      7   3.04283  2.56598  3.09273  0.18624      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      8   3.38051  0.13666  3.43217  2.79055      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      9   2.91546  3.54130  0.12237  3.44120      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     10   2.91546  3.54130  0.12237  3.44120     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     11   3.38051  0.13666  3.43217  2.79055     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     12   0.14807  3.33468  2.77222  3.23207     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     13   0.14807  3.33468  2.77222  3.23207     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     14   3.38051  0.13666  3.43217  2.79055     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     15   2.91546  3.54130  0.12237  3.44120     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     16   2.91546  3.54130  0.12237  3.44120     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     17   0.14807  3.33468  2.77222  3.23207     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     18   3.04283  2.56598  3.09273  0.18624     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     19   0.14807  3.33468  2.77222  3.23207     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     20   3.04283  2.56598  3.09273  0.18624     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     21   3.38051  0.13666  3.43217  2.79055     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     22   3.04283  2.56598  3.09273  0.18624     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     23   3.38051  0.13666  3.43217  2.79055     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     24   2.91546  3.54130  0.12237  3.44120     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     25   3.38051  0.13666  3.43217  2.79055     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     26   2.91546  3.54130  0.12237  3.44120     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     27   3.04283  2.56598  3.09273  0.18624     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     28   3.38051  0.13666  3.43217  2.79055     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     29   3.04283  2.56598  3.09273  0.18624     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     30   3.38051  0.13666  3.43217  2.79055     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     31   2.91546  3.54130  0.12237  3.44120     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     32   3.38051  0.13666  3.43217  2.79055     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     33   0.14807  3.33468  2.77222  3.23207     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     34   3.04283  2.56598  3.09273  0.18624     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     35   3.38051  0.13666  3.43217  2.79055     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     36   2.91546  3.54130  0.12237  3.44120     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     37   0.14807  3.33468  2.77222  3.23207     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     38   3.04283  2.56598  3.09273  0.18624     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     39   2.91546  3.54130  0.12237  3.44120     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     40   0.14807  3.33468  2.77222  3.23207     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     41   0.14807  3.33468  2.77222  3.23207     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     42   2.91546  3.54130  0.12237  3.44120     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     43   0.14807  3.33468  2.77222  3.23207     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     44   0.14807  3.33468  2.77222  3.23207     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     45   3.38051  0.13666  3.43217  2.79055     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01911  3.96719        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevene_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:57:57 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2718696898
+STATS LOCAL MSV       -7.4885  0.72793
+STATS LOCAL VITERBI   -8.0276  0.72793
+STATS LOCAL FORWARD   -3.5798  0.72793
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29079  1.34425  1.43332  1.48857
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevenf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:58:01 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1738718247
+STATS LOCAL MSV       -7.5475  0.72825
+STATS LOCAL VITERBI   -8.3216  0.72825
+STATS LOCAL FORWARD   -3.4732  0.72825
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28986  1.39643  1.49646  1.37323
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.81865  0.23582  2.88868  2.35662     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   0.23862  2.84929  2.43386  2.70756     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.81865  0.23582  2.88868  2.35662     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.57915  2.25909  2.64442  0.28946     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.57915  2.25909  2.64442  0.28946     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_seveng_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:58:06 2012
+NSEQ  8
+EFFN  3.160156
+CKSUM 1659179232
+STATS LOCAL MSV       -7.9878  0.71933
+STATS LOCAL VITERBI   -7.5924  0.71933
+STATS LOCAL FORWARD   -3.9345  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40981  1.15513  1.38466  1.65870
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  0.00000        *
+      1   3.37140  0.13782  3.42342  2.78385      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+      2   2.90985  3.53322  0.12331  3.43230      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+      3   0.14916  3.32679  2.76705  3.22344      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+      4   3.37140  0.13782  3.42342  2.78385      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+      5   3.03495  2.56095  3.08514  0.18757      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+      6   3.37140  0.13782  3.42342  2.78385      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+      7   3.03495  2.56095  3.08514  0.18757      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+      8   3.37140  0.13782  3.42342  2.78385      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+      9   2.90985  3.53322  0.12331  3.43230      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     10   2.90985  3.53322  0.12331  3.43230     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     11   3.37140  0.13782  3.42342  2.78385     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     12   0.14916  3.32679  2.76705  3.22344     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     13   0.14916  3.32679  2.76705  3.22344     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     14   3.37140  0.13782  3.42342  2.78385     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     15   2.90985  3.53322  0.12331  3.43230     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     16   2.90985  3.53322  0.12331  3.43230     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     17   0.14916  3.32679  2.76705  3.22344     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     18   3.03495  2.56095  3.08514  0.18757     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     19   0.14916  3.32679  2.76705  3.22344     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     20   3.03495  2.56095  3.08514  0.18757     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     21   3.37140  0.13782  3.42342  2.78385     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     22   3.03495  2.56095  3.08514  0.18757     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     23   3.03495  2.56095  3.08514  0.18757     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     24   2.90985  3.53322  0.12331  3.43230     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     25   2.90985  3.53322  0.12331  3.43230     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     26   3.37140  0.13782  3.42342  2.78385     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     27   3.03495  2.56095  3.08514  0.18757     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     28   3.37140  0.13782  3.42342  2.78385     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     29   3.37140  0.13782  3.42342  2.78385     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     30   3.37140  0.13782  3.42342  2.78385     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     31   2.90985  3.53322  0.12331  3.43230     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     32   3.37140  0.13782  3.42342  2.78385     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     33   3.37140  0.13782  3.42342  2.78385     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     34   0.14916  3.32679  2.76705  3.22344     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     35   3.37140  0.13782  3.42342  2.78385     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     36   2.90985  3.53322  0.12331  3.43230     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     37   0.14916  3.32679  2.76705  3.22344     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     38   3.03495  2.56095  3.08514  0.18757     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     39   2.90985  3.53322  0.12331  3.43230     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     40   0.14916  3.32679  2.76705  3.22344     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     41   0.14916  3.32679  2.76705  3.22344     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     42   2.90985  3.53322  0.12331  3.43230     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     43   0.14916  3.32679  2.76705  3.22344     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     44   0.14916  3.32679  2.76705  3.22344     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03803  3.98158  3.98158  1.46634  0.26236  1.09861  0.40547
+     45   3.37140  0.13782  3.42342  2.78385     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01919  3.96275        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevenh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:58:12 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3370148041
+STATS LOCAL MSV       -8.0586  0.72009
+STATS LOCAL VITERBI   -7.6977  0.72009
+STATS LOCAL FORWARD   -3.8459  0.72009
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34211  1.26931  1.38024  1.57910
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   3.30705  0.14631  3.36166  2.73626      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   3.30705  0.14631  3.36166  2.73626     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_seveni_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:58:18 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2759242053
+STATS LOCAL MSV       -7.9338  0.72035
+STATS LOCAL VITERBI   -7.6316  0.72035
+STATS LOCAL FORWARD   -3.8921  0.72035
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28091  1.32591  1.52215  1.43375
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   3.30705  0.14631  3.36166  2.73626     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   2.97980  2.52563  3.03204  0.19727     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   0.15719  3.27118  2.73043  3.16274     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevenj_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:58:24 2012
+NSEQ  4
+EFFN  3.230469
+CKSUM 1413873171
+STATS LOCAL MSV       -8.0313  0.71932
+STATS LOCAL VITERBI   -7.5228  0.71932
+STATS LOCAL FORWARD   -4.0558  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40654  1.32503  1.38182  1.43510
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  0.00000        *
+      1   3.05845  2.57594  3.10775  0.18362      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      2   2.92650  3.55724  0.12055  3.45877      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      3   0.14592  3.35028  2.78241  3.24912      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      4   3.39853  0.13441  3.44944  2.80375      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      5   3.05845  2.57594  3.10775  0.18362      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      6   3.39853  0.13441  3.44944  2.80375      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      7   3.05845  2.57594  3.10775  0.18362      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      8   3.39853  0.13441  3.44944  2.80375      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      9   2.92650  3.55724  0.12055  3.45877      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     10   2.92650  3.55724  0.12055  3.45877     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     11   3.39853  0.13441  3.44944  2.80375     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     12   0.14592  3.35028  2.78241  3.24912     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     13   0.14592  3.35028  2.78241  3.24912     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     14   3.39853  0.13441  3.44944  2.80375     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     15   2.92650  3.55724  0.12055  3.45877     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     16   2.92650  3.55724  0.12055  3.45877     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     17   0.14592  3.35028  2.78241  3.24912     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     18   3.05845  2.57594  3.10775  0.18362     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     19   0.14592  3.35028  2.78241  3.24912     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     20   3.05845  2.57594  3.10775  0.18362     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     21   3.39853  0.13441  3.44944  2.80375     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     22   3.05845  2.57594  3.10775  0.18362     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     23   3.05845  2.57594  3.10775  0.18362     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     24   2.92650  3.55724  0.12055  3.45877     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     25   2.92650  3.55724  0.12055  3.45877     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     26   3.39853  0.13441  3.44944  2.80375     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     27   3.05845  2.57594  3.10775  0.18362     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     28   3.39853  0.13441  3.44944  2.80375     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     29   3.39853  0.13441  3.44944  2.80375     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     30   3.39853  0.13441  3.44944  2.80375     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     31   2.92650  3.55724  0.12055  3.45877     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     32   3.05845  2.57594  3.10775  0.18362     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     33   0.14592  3.35028  2.78241  3.24912     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     34   3.05845  2.57594  3.10775  0.18362     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     35   3.39853  0.13441  3.44944  2.80375     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     36   2.92650  3.55724  0.12055  3.45877     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     37   0.14592  3.35028  2.78241  3.24912     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     38   3.05845  2.57594  3.10775  0.18362     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     39   2.92650  3.55724  0.12055  3.45877     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     40   0.14592  3.35028  2.78241  3.24912     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     41   0.14592  3.35028  2.78241  3.24912     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     42   2.92650  3.55724  0.12055  3.45877     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     43   0.14592  3.35028  2.78241  3.24912     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     44   0.14592  3.35028  2.78241  3.24912     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     45   3.39853  0.13441  3.44944  2.80375     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01894  3.97602        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevenk_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:58:30 2012
+NSEQ  5
+EFFN  3.217773
+CKSUM 3068909412
+STATS LOCAL MSV       -8.0273  0.71930
+STATS LOCAL VITERBI   -7.4396  0.71930
+STATS LOCAL FORWARD   -3.9665  0.71930
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34043  1.32830  1.38034  1.50578
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  0.00000        *
+      1   3.05424  2.57325  3.10370  0.18432      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      2   2.92353  3.55295  0.12104  3.45404      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      3   0.14649  3.34608  2.77966  3.24453      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      4   3.39368  0.13501  3.44479  2.80020      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      5   3.05424  2.57325  3.10370  0.18432      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      6   3.39368  0.13501  3.44479  2.80020      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      7   3.05424  2.57325  3.10370  0.18432      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      8   3.39368  0.13501  3.44479  2.80020      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      9   2.92353  3.55295  0.12104  3.45404      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     10   2.92353  3.55295  0.12104  3.45404     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     11   3.39368  0.13501  3.44479  2.80020     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     12   0.14649  3.34608  2.77966  3.24453     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     13   0.14649  3.34608  2.77966  3.24453     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     14   3.39368  0.13501  3.44479  2.80020     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     15   2.92353  3.55295  0.12104  3.45404     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     16   2.92353  3.55295  0.12104  3.45404     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     17   0.14649  3.34608  2.77966  3.24453     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     18   3.05424  2.57325  3.10370  0.18432     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     19   0.14649  3.34608  2.77966  3.24453     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     20   3.05424  2.57325  3.10370  0.18432     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     21   3.39368  0.13501  3.44479  2.80020     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     22   3.05424  2.57325  3.10370  0.18432     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     23   0.14649  3.34608  2.77966  3.24453     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     24   2.92353  3.55295  0.12104  3.45404     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     25   2.92353  3.55295  0.12104  3.45404     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     26   3.39368  0.13501  3.44479  2.80020     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     27   3.05424  2.57325  3.10370  0.18432     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     28   3.39368  0.13501  3.44479  2.80020     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     29   3.05424  2.57325  3.10370  0.18432     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     30   3.05424  2.57325  3.10370  0.18432     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     31   2.92353  3.55295  0.12104  3.45404     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     32   3.39368  0.13501  3.44479  2.80020     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     33   3.39368  0.13501  3.44479  2.80020     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     34   0.14649  3.34608  2.77966  3.24453     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     35   3.39368  0.13501  3.44479  2.80020     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     36   2.92353  3.55295  0.12104  3.45404     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     37   0.14649  3.34608  2.77966  3.24453     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     38   3.05424  2.57325  3.10370  0.18432     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     39   2.92353  3.55295  0.12104  3.45404     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     40   0.14649  3.34608  2.77966  3.24453     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     41   0.14649  3.34608  2.77966  3.24453     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     42   2.92353  3.55295  0.12104  3.45404     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     43   0.14649  3.34608  2.77966  3.24453     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     44   0.14649  3.34608  2.77966  3.24453     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     45   3.39368  0.13501  3.44479  2.80020     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01898  3.97364        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevenl_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:58:36 2012
+NSEQ  6
+EFFN  3.260742
+CKSUM 1522618069
+STATS LOCAL MSV       -7.9109  0.71931
+STATS LOCAL VITERBI   -7.6232  0.71931
+STATS LOCAL FORWARD   -4.3580  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33594  1.46037  1.37844  1.37450
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00017  4.00017  1.46634  0.26236  0.00000        *
+      1   0.14457  3.36023  2.78889  3.26000      1 - -
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+          1.38629  1.38629  1.38629  1.38629
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+     45   3.41001  0.13300  3.46044  2.81215     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01883  3.98169        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevenm_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:58:41 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3456743413
+STATS LOCAL MSV       -7.9235  0.72006
+STATS LOCAL VITERBI   -7.5962  0.72006
+STATS LOCAL FORWARD   -3.5311  0.72006
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28260  1.21341  1.44975  1.65613
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
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+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevenn_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:58:46 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 239138404
+STATS LOCAL MSV       -7.8873  0.72025
+STATS LOCAL VITERBI   -7.6451  0.72025
+STATS LOCAL FORWARD   -3.8332  0.72025
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40577  1.32699  1.38047  1.43511
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   2.97980  2.52563  3.03204  0.19727      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   0.15719  3.27118  2.73043  3.16274      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.97980  2.52563  3.03204  0.19727      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   3.30705  0.14631  3.36166  2.73626      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   2.97980  2.52563  3.03204  0.19727      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.86982  3.47591  0.13017  3.36931      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   2.86982  3.47591  0.13017  3.36931     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   3.30705  0.14631  3.36166  2.73626     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   0.15719  3.27118  2.73043  3.16274     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   0.15719  3.27118  2.73043  3.16274     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   2.86982  3.47591  0.13017  3.36931     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   0.15719  3.27118  2.73043  3.16274     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   0.15719  3.27118  2.73043  3.16274     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   3.30705  0.14631  3.36166  2.73626     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.97980  2.52563  3.03204  0.19727     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.86982  3.47591  0.13017  3.36931     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   2.97980  2.52563  3.03204  0.19727     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   2.97980  2.52563  3.03204  0.19727     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   3.30705  0.14631  3.36166  2.73626     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   3.30705  0.14631  3.36166  2.73626     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.86982  3.47591  0.13017  3.36931     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.86982  3.47591  0.13017  3.36931     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   0.15719  3.27118  2.73043  3.16274     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_seveno_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:58:53 2012
+NSEQ  25
+EFFN  3.305054
+CKSUM 615057231
+STATS LOCAL MSV       -8.1082  0.71933
+STATS LOCAL VITERBI   -7.6429  0.71933
+STATS LOCAL FORWARD   -3.7763  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.36993  1.20241  1.43339  1.57550
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  0.00000        *
+      1   3.42658  0.13099  3.47632  2.82425      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+      2   2.94358  3.58201  0.11779  3.48608      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+      3   0.14264  3.37460  2.79825  3.27573      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+      4   3.42658  0.13099  3.47632  2.82425      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+      5   3.08290  2.59151  3.13127  0.17960      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+      6   3.42658  0.13099  3.47632  2.82425      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+      7   3.08290  2.59151  3.13127  0.17960      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+      8   3.42658  0.13099  3.47632  2.82425      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+      9   2.94358  3.58201  0.11779  3.48608      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     10   0.64013  2.55391  1.18659  2.41084     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     11   3.42658  0.13099  3.47632  2.82425     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     12   0.14264  3.37460  2.79825  3.27573     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     13   0.14264  3.37460  2.79825  3.27573     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     14   3.42658  0.13099  3.47632  2.82425     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     15   2.94358  3.58201  0.11779  3.48608     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     16   2.94358  3.58201  0.11779  3.48608     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     17   0.14264  3.37460  2.79825  3.27573     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     18   3.08290  2.59151  3.13127  0.17960     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     19   0.14264  3.37460  2.79825  3.27573     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     20   3.08290  2.59151  3.13127  0.17960     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     21   3.42658  0.13099  3.47632  2.82425     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     22   3.08290  2.59151  3.13127  0.17960     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     23   3.42658  0.13099  3.47632  2.82425     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     24   2.94358  3.58201  0.11779  3.48608     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     25   2.94358  3.58201  0.11779  3.48608     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     26   3.42658  0.13099  3.47632  2.82425     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     27   3.08290  2.59151  3.13127  0.17960     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     28   3.42658  0.13099  3.47632  2.82425     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     29   3.08290  2.59151  3.13127  0.17960     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     30   3.42658  0.13099  3.47632  2.82425     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     31   2.94358  3.58201  0.11779  3.48608     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     32   3.42658  0.13099  3.47632  2.82425     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     33   0.14264  3.37460  2.79825  3.27573     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     34   3.08290  2.59151  3.13127  0.17960     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     35   3.42658  0.13099  3.47632  2.82425     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     36   2.94358  3.58201  0.11779  3.48608     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     37   0.14264  3.37460  2.79825  3.27573     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     38   3.08290  2.59151  3.13127  0.17960     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     39   2.94358  3.58201  0.11779  3.48608     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     40   0.14264  3.37460  2.79825  3.27573     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     41   0.14264  3.37460  2.79825  3.27573     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     42   2.94358  3.58201  0.11779  3.48608     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     43   0.14264  3.37460  2.79825  3.27573     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     44   0.14264  3.37460  2.79825  3.27573     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03701  4.00825  4.00825  1.46634  0.26236  1.09861  0.40547
+     45   3.42658  0.13099  3.47632  2.82425     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01867  3.98992        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevenp_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:58:57 2012
+NSEQ  4
+EFFN  3.191406
+CKSUM 3224455691
+STATS LOCAL MSV       -8.0922  0.71932
+STATS LOCAL VITERBI   -7.4985  0.71932
+STATS LOCAL FORWARD   -3.9868  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34156  1.26862  1.38126  1.57949
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  0.00000        *
+      1   3.04545  2.56765  3.09524  0.18579      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      2   2.91732  3.54398  0.12206  3.44415      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      3   0.14770  3.33730  2.77393  3.23493      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      4   3.38354  0.13628  3.43507  2.79277      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      5   3.04545  2.56765  3.09524  0.18579      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      6   3.38354  0.13628  3.43507  2.79277      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      7   3.38354  0.13628  3.43507  2.79277      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      8   3.38354  0.13628  3.43507  2.79277      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+      9   2.91732  3.54398  0.12206  3.44415      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     10   2.91732  3.54398  0.12206  3.44415     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     11   3.38354  0.13628  3.43507  2.79277     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     12   0.14770  3.33730  2.77393  3.23493     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     13   0.14770  3.33730  2.77393  3.23493     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     14   3.38354  0.13628  3.43507  2.79277     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     15   2.91732  3.54398  0.12206  3.44415     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     16   2.91732  3.54398  0.12206  3.44415     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     17   0.14770  3.33730  2.77393  3.23493     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     18   3.04545  2.56765  3.09524  0.18579     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     19   0.14770  3.33730  2.77393  3.23493     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     20   3.04545  2.56765  3.09524  0.18579     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     21   3.38354  0.13628  3.43507  2.79277     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     22   3.04545  2.56765  3.09524  0.18579     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     23   0.14770  3.33730  2.77393  3.23493     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     24   2.91732  3.54398  0.12206  3.44415     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     25   2.91732  3.54398  0.12206  3.44415     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     26   3.38354  0.13628  3.43507  2.79277     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     27   3.04545  2.56765  3.09524  0.18579     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     28   3.38354  0.13628  3.43507  2.79277     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     29   3.04545  2.56765  3.09524  0.18579     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     30   3.38354  0.13628  3.43507  2.79277     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     31   2.91732  3.54398  0.12206  3.44415     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     32   3.38354  0.13628  3.43507  2.79277     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     33   0.14770  3.33730  2.77393  3.23493     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     34   3.04545  2.56765  3.09524  0.18579     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     35   3.38354  0.13628  3.43507  2.79277     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     36   2.91732  3.54398  0.12206  3.44415     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     37   0.14770  3.33730  2.77393  3.23493     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     38   3.04545  2.56765  3.09524  0.18579     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     39   2.91732  3.54398  0.12206  3.44415     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     40   0.14770  3.33730  2.77393  3.23493     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     41   0.14770  3.33730  2.77393  3.23493     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     42   2.91732  3.54398  0.12206  3.44415     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     43   0.14770  3.33730  2.77393  3.23493     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     44   0.14770  3.33730  2.77393  3.23493     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
+     45   3.38354  0.13628  3.43507  2.79277     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01908  3.96867        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevenr_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:59:15 2012
+NSEQ  74
+EFFN  3.184204
+CKSUM 2229931290
+STATS LOCAL MSV       -8.1546  0.71932
+STATS LOCAL VITERBI   -7.7675  0.71932
+STATS LOCAL FORWARD   -3.8541  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40873  1.20772  1.38372  1.57976
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  0.00000        *
+      1   3.38075  0.13663  3.43240  2.79072      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+      2   2.91561  3.54151  0.12235  3.44143      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+      3   0.14804  3.33489  2.77235  3.23229      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+      4   3.38075  0.13663  3.43240  2.79072      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+      5   3.04304  2.56611  3.09292  0.18620      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+      6   3.38075  0.13663  3.43240  2.79072      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+      7   3.04304  2.56611  3.09292  0.18620      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+      8   3.38075  0.13663  3.43240  2.79072      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+      9   2.91561  3.54151  0.12235  3.44143      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     10   2.91561  3.54151  0.12235  3.44143     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     11   3.38075  0.13663  3.43240  2.79072     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     12   0.14804  3.33489  2.77235  3.23229     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     13   0.14804  3.33489  2.77235  3.23229     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     14   3.38075  0.13663  3.43240  2.79072     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     15   2.91561  3.54151  0.12235  3.44143     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     16   2.91561  3.54151  0.12235  3.44143     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     17   0.14804  3.33489  2.77235  3.23229     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     18   3.04304  2.56611  3.09292  0.18620     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     19   0.14804  3.33489  2.77235  3.23229     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     20   3.04304  2.56611  3.09292  0.18620     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     21   3.38075  0.13663  3.43240  2.79072     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     22   3.04304  2.56611  3.09292  0.18620     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     23   3.38075  0.13663  3.43240  2.79072     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     24   2.91561  3.54151  0.12235  3.44143     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     25   2.91561  3.54151  0.12235  3.44143     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     26   3.38075  0.13663  3.43240  2.79072     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     27   3.04304  2.56611  3.09292  0.18620     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     28   3.38075  0.13663  3.43240  2.79072     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     29   3.04304  2.56611  3.09292  0.18620     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     30   3.38075  0.13663  3.43240  2.79072     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     31   2.91561  3.54151  0.12235  3.44143     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     32   3.38075  0.13663  3.43240  2.79072     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     33   0.14804  3.33489  2.77235  3.23229     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     34   3.04304  2.56611  3.09292  0.18620     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     35   3.38075  0.13663  3.43240  2.79072     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     36   2.91561  3.54151  0.12235  3.44143     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     37   0.14804  3.33489  2.77235  3.23229     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     38   3.04304  2.56611  3.09292  0.18620     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     39   2.91561  3.54151  0.12235  3.44143     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     40   0.14804  3.33489  2.77235  3.23229     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     41   0.14804  3.33489  2.77235  3.23229     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     42   2.91561  3.54151  0.12235  3.44143     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     43   0.14804  3.33489  2.77235  3.23229     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     44   0.14804  3.33489  2.77235  3.23229     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03785  3.98605  3.98605  1.46634  0.26236  1.09861  0.40547
+     45   3.38075  0.13663  3.43240  2.79072     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01911  3.96731        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevens_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:59:22 2012
+NSEQ  26
+EFFN  3.310303
+CKSUM 3119625533
+STATS LOCAL MSV       -8.1714  0.71932
+STATS LOCAL VITERBI   -7.5462  0.71932
+STATS LOCAL FORWARD   -4.0110  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33741  1.25636  1.37825  1.60561
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  0.00000        *
+      1   3.42853  0.13075  3.47818  2.82567      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+      2   2.94476  3.58372  0.11760  3.48798      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+      3   0.14242  3.37629  2.79934  3.27758      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+      4   3.42853  0.13075  3.47818  2.82567      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+      5   3.08460  2.59259  3.13291  0.17932      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+      6   3.42853  0.13075  3.47818  2.82567      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+      7   2.48923  1.32755  2.55816  0.55433      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+      8   3.42853  0.13075  3.47818  2.82567      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+      9   2.94476  3.58372  0.11760  3.48798      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     10   2.94476  3.58372  0.11760  3.48798     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     11   3.42853  0.13075  3.47818  2.82567     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     12   0.14242  3.37629  2.79934  3.27758     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     13   0.14242  3.37629  2.79934  3.27758     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     14   3.42853  0.13075  3.47818  2.82567     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     15   2.94476  3.58372  0.11760  3.48798     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     16   2.94476  3.58372  0.11760  3.48798     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     17   0.14242  3.37629  2.79934  3.27758     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     18   3.08460  2.59259  3.13291  0.17932     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     19   0.14242  3.37629  2.79934  3.27758     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     20   3.08460  2.59259  3.13291  0.17932     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     21   3.10916  0.21109  3.16829  2.26736     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     22   3.08460  2.59259  3.13291  0.17932     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     23   0.14242  3.37629  2.79934  3.27758     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     24   2.94476  3.58372  0.11760  3.48798     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     25   2.94476  3.58372  0.11760  3.48798     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     26   3.42853  0.13075  3.47818  2.82567     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     27   3.08460  2.59259  3.13291  0.17932     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     28   3.42853  0.13075  3.47818  2.82567     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     29   3.08460  2.59259  3.13291  0.17932     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     30   3.42853  0.13075  3.47818  2.82567     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     31   2.94476  3.58372  0.11760  3.48798     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     32   3.42853  0.13075  3.47818  2.82567     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     33   0.14242  3.37629  2.79934  3.27758     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     34   3.08460  2.59259  3.13291  0.17932     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     35   3.42853  0.13075  3.47818  2.82567     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     36   2.94476  3.58372  0.11760  3.48798     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     37   0.14242  3.37629  2.79934  3.27758     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     38   3.08460  2.59259  3.13291  0.17932     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     39   2.94476  3.58372  0.11760  3.48798     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     40   0.14242  3.37629  2.79934  3.27758     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     41   0.14242  3.37629  2.79934  3.27758     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     42   2.94476  3.58372  0.11760  3.48798     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     43   0.14242  3.37629  2.79934  3.27758     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     44   0.14242  3.37629  2.79934  3.27758     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03697  4.00920  4.00920  1.46634  0.26236  1.09861  0.40547
+     45   3.42853  0.13075  3.47818  2.82567     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01866  3.99089        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevent_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:59:29 2012
+NSEQ  45
+EFFN  3.331604
+CKSUM 206813971
+STATS LOCAL MSV       -8.1957  0.71932
+STATS LOCAL VITERBI   -7.6561  0.71932
+STATS LOCAL FORWARD   -3.8955  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.38293  1.23894  1.37747  1.57383
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  0.00000        *
+      1   3.43639  0.12982  3.48571  2.83139      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+      2   2.94952  3.59065  0.11684  3.49562      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+      3   0.14152  3.38311  2.80378  3.28505      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+      4   3.43639  0.12982  3.48571  2.83139      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+      5   3.09149  2.59697  3.13953  0.17821      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+      6   3.43639  0.12982  3.48571  2.83139      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+      7   3.09149  2.59697  3.13953  0.17821      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+      8   3.43639  0.12982  3.48571  2.83139      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+      9   2.94952  3.59065  0.11684  3.49562      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     10   2.94952  3.59065  0.11684  3.49562     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     11   3.43639  0.12982  3.48571  2.83139     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     12   0.14152  3.38311  2.80378  3.28505     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     13   0.14152  3.38311  2.80378  3.28505     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     14   3.43639  0.12982  3.48571  2.83139     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     15   2.94952  3.59065  0.11684  3.49562     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     16   2.94952  3.59065  0.11684  3.49562     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     17   0.14152  3.38311  2.80378  3.28505     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     18   3.09149  2.59697  3.13953  0.17821     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     19   0.14152  3.38311  2.80378  3.28505     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     20   3.09149  2.59697  3.13953  0.17821     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     21   3.43639  0.12982  3.48571  2.83139     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     22   3.09149  2.59697  3.13953  0.17821     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     23   1.05652  0.92289  2.14755  1.97908     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     24   2.94952  3.59065  0.11684  3.49562     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     25   2.94952  3.59065  0.11684  3.49562     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     26   3.43639  0.12982  3.48571  2.83139     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     27   3.09149  2.59697  3.13953  0.17821     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     28   3.43639  0.12982  3.48571  2.83139     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     29   3.09149  2.59697  3.13953  0.17821     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     30   3.43639  0.12982  3.48571  2.83139     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     31   2.94952  3.59065  0.11684  3.49562     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     32   3.43639  0.12982  3.48571  2.83139     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     33   0.14152  3.38311  2.80378  3.28505     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     34   3.09149  2.59697  3.13953  0.17821     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     35   3.43639  0.12982  3.48571  2.83139     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     36   2.94952  3.59065  0.11684  3.49562     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     37   0.14152  3.38311  2.80378  3.28505     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     38   3.09149  2.59697  3.13953  0.17821     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     39   2.94952  3.59065  0.11684  3.49562     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     40   0.14152  3.38311  2.80378  3.28505     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     41   0.14152  3.38311  2.80378  3.28505     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     42   2.94952  3.59065  0.11684  3.49562     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     43   0.14152  3.38311  2.80378  3.28505     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     44   0.14152  3.38311  2.80378  3.28505     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01306  4.01306  1.46634  0.26236  1.09861  0.40547
+     45   3.43639  0.12982  3.48571  2.83139     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01858  3.99482        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_sevenu_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:59:44 2012
+NSEQ  29
+EFFN  3.196655
+CKSUM 1208045264
+STATS LOCAL MSV       -8.0269  0.71932
+STATS LOCAL VITERBI   -7.6133  0.71932
+STATS LOCAL FORWARD   -3.7499  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34312  1.20706  1.45348  1.57920
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  0.00000        *
+      1   3.38556  0.13603  3.43701  2.79425      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+      2   2.91856  3.54577  0.12186  3.44613      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+      3   0.14746  3.33905  2.77507  3.23685      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+      4   3.38556  0.13603  3.43701  2.79425      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+      5   3.04720  2.56877  3.09693  0.18550      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+      6   3.38556  0.13603  3.43701  2.79425      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+      7   3.04720  2.56877  3.09693  0.18550      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+      8   3.38556  0.13603  3.43701  2.79425      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+      9   2.91856  3.54577  0.12186  3.44613      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     10   0.14746  3.33905  2.77507  3.23685     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     11   3.38556  0.13603  3.43701  2.79425     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     12   0.14746  3.33905  2.77507  3.23685     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     13   0.14746  3.33905  2.77507  3.23685     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     14   3.38556  0.13603  3.43701  2.79425     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     15   2.91856  3.54577  0.12186  3.44613     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     16   2.91856  3.54577  0.12186  3.44613     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     17   0.14746  3.33905  2.77507  3.23685     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     18   3.04720  2.56877  3.09693  0.18550     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     19   0.14746  3.33905  2.77507  3.23685     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     20   3.04720  2.56877  3.09693  0.18550     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     21   3.38556  0.13603  3.43701  2.79425     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     22   3.04720  2.56877  3.09693  0.18550     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     23   3.38556  0.13603  3.43701  2.79425     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     24   2.91856  3.54577  0.12186  3.44613     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     25   2.91856  3.54577  0.12186  3.44613     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     26   3.38556  0.13603  3.43701  2.79425     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     27   3.04720  2.56877  3.09693  0.18550     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     28   3.38556  0.13603  3.43701  2.79425     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     29   3.04720  2.56877  3.09693  0.18550     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     30   3.38556  0.13603  3.43701  2.79425     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     31   2.91856  3.54577  0.12186  3.44613     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     32   3.38556  0.13603  3.43701  2.79425     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     33   0.14746  3.33905  2.77507  3.23685     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     34   3.04720  2.56877  3.09693  0.18550     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     35   3.38556  0.13603  3.43701  2.79425     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     36   2.91856  3.54577  0.12186  3.44613     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     37   0.14746  3.33905  2.77507  3.23685     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     38   3.04720  2.56877  3.09693  0.18550     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     39   2.91856  3.54577  0.12186  3.44613     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     40   0.14746  3.33905  2.77507  3.23685     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     41   0.14746  3.33905  2.77507  3.23685     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     42   2.91856  3.54577  0.12186  3.44613     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     43   0.14746  3.33905  2.77507  3.23685     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     44   0.14746  3.33905  2.77507  3.23685     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03776  3.98836  3.98836  1.46634  0.26236  1.09861  0.40547
+     45   3.38556  0.13603  3.43701  2.79425     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01906  3.96966        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:57:14 2012
+NSEQ  25
+EFFN  3.634644
+CKSUM 3375772547
+STATS LOCAL MSV       -7.6909  0.71933
+STATS LOCAL VITERBI   -7.6485  0.71933
+STATS LOCAL FORWARD   -4.2957  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.41402  1.35683  1.31536  1.46541
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  0.00000        *
+      1   3.01261  3.68311  0.10724  3.59789      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+      2   3.01261  3.68311  0.10724  3.59789      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+      3   0.20058  3.22612  2.32391  3.12033      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+      4   3.54206  0.11793  3.58677  2.90766      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+      5   3.18542  2.65659  3.22983  0.16383      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+      6   3.54206  0.11793  3.58677  2.90766      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+      7   2.45961  0.91446  2.53114  0.83418      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+      8   3.54206  0.11793  3.58677  2.90766      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+      9   1.15707  2.62856  0.63457  2.48594      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     10   0.63166  2.60938  1.17129  2.46809     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     11   3.54206  0.11793  3.58677  2.90766     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     12   0.12998  3.47513  2.86322  3.38593     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     13   0.12998  3.47513  2.86322  3.38593     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     14   3.18542  2.65659  3.22983  0.16383     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     15   3.01261  3.68311  0.10724  3.59789     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     16   3.01261  3.68311  0.10724  3.59789     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     17   0.12998  3.47513  2.86322  3.38593     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     18   3.18542  2.65659  3.22983  0.16383     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     19   0.12998  3.47513  2.86322  3.38593     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     20   3.18542  2.65659  3.22983  0.16383     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     21   3.54206  0.11793  3.58677  2.90766     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     22   3.18542  2.65659  3.22983  0.16383     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     23   3.18542  2.65659  3.22983  0.16383     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     24   3.01261  3.68311  0.10724  3.59789     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     25   3.01261  3.68311  0.10724  3.59789     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     26   3.54206  0.11793  3.58677  2.90766     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     27   3.18542  2.65659  3.22983  0.16383     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     28   3.54206  0.11793  3.58677  2.90766     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     29   3.18542  2.65659  3.22983  0.16383     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     30   3.54206  0.11793  3.58677  2.90766     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     31   3.01261  3.68311  0.10724  3.59789     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     32   3.54206  0.11793  3.58677  2.90766     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     33   0.12998  3.47513  2.86322  3.38593     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     34   3.18542  2.65659  3.22983  0.16383     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     35   3.54206  0.11793  3.58677  2.90766     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     36   3.01261  3.68311  0.10724  3.59789     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     37   0.12998  3.47513  2.86322  3.38593     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     38   3.18542  2.65659  3.22983  0.16383     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     39   3.01261  3.68311  0.10724  3.59789     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     40   0.12998  3.47513  2.86322  3.38593     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     41   0.12998  3.47513  2.86322  3.38593     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     42   3.01261  3.68311  0.10724  3.59789     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     43   0.12998  3.47513  2.86322  3.38593     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     44   3.01261  3.68311  0.10724  3.59789     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03488  4.06640  4.06640  1.46634  0.26236  1.09861  0.40547
+     45   3.54206  0.11793  3.58677  2.90766     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01759  4.04911        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_ten_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:14:50 2012
+NSEQ  8
+EFFN  3.410156
+CKSUM 2247624815
+STATS LOCAL MSV       -7.6172  0.71932
+STATS LOCAL VITERBI   -7.5031  0.71932
+STATS LOCAL FORWARD   -4.1590  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33211  1.33801  1.36527  1.52141
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  0.00000        *
+      1   2.29532  0.53992  1.62521  2.12354      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+      2   2.96668  3.61569  0.11415  3.52327      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+      3   0.13830  3.40786  2.81982  3.31216      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+      4   3.46489  0.12648  3.51299  2.85207      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+      5   3.11656  2.61290  3.16364  0.17424      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+      6   3.46489  0.12648  3.51299  2.85207      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+      7   3.11656  2.61290  3.16364  0.17424      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+      8   3.46489  0.12648  3.51299  2.85207      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+      9   2.96668  3.61569  0.11415  3.52327      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     10   2.96668  3.61569  0.11415  3.52327     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     11   3.46489  0.12648  3.51299  2.85207     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     12   0.13830  3.40786  2.81982  3.31216     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     13   0.13830  3.40786  2.81982  3.31216     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     14   2.61100  1.55260  2.67637  0.43691     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     15   2.96668  3.61569  0.11415  3.52327     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     16   2.96668  3.61569  0.11415  3.52327     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     17   0.13830  3.40786  2.81982  3.31216     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     18   3.11656  2.61290  3.16364  0.17424     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     19   0.13830  3.40786  2.81982  3.31216     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     20   3.11656  2.61290  3.16364  0.17424     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     21   3.46489  0.12648  3.51299  2.85207     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     22   3.11656  2.61290  3.16364  0.17424     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     23   0.13830  3.40786  2.81982  3.31216     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     24   2.96668  3.61569  0.11415  3.52327     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     25   2.96668  3.61569  0.11415  3.52327     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     26   3.46489  0.12648  3.51299  2.85207     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     27   3.11656  2.61290  3.16364  0.17424     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     28   3.46489  0.12648  3.51299  2.85207     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     29   3.11656  2.61290  3.16364  0.17424     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     30   3.46489  0.12648  3.51299  2.85207     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     31   2.96668  3.61569  0.11415  3.52327     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     32   3.46489  0.12648  3.51299  2.85207     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     33   0.13830  3.40786  2.81982  3.31216     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     34   3.11656  2.61290  3.16364  0.17424     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     35   3.46489  0.12648  3.51299  2.85207     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     36   2.96668  3.61569  0.11415  3.52327     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     37   0.13830  3.40786  2.81982  3.31216     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     38   3.11656  2.61290  3.16364  0.17424     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     39   2.96668  3.61569  0.11415  3.52327     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     40   0.13830  3.40786  2.81982  3.31216     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     41   0.13830  3.40786  2.81982  3.31216     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     42   2.96668  3.61569  0.11415  3.52327     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     43   0.13830  3.40786  2.81982  3.31216     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     44   0.13830  3.40786  2.81982  3.31216     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
+     45   3.46489  0.12648  3.51299  2.85207     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01832  4.00918        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:55:24 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3870492215
+STATS LOCAL MSV       -7.3319  0.72969
+STATS LOCAL VITERBI   -8.2230  0.72969
+STATS LOCAL FORWARD   -3.4162  0.72969
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.26546  1.40829  1.55378  1.33987
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.81865  0.23582  2.88868  2.35662      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.57915  2.25909  2.64442  0.28946      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.53331  3.02441  0.20344  2.88069      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.53331  3.02441  0.20344  2.88069     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.15554  1.00938  2.23102  0.88601     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.81865  0.23582  2.88868  2.35662     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   0.23862  2.84929  2.43386  2.70756     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.57915  2.25909  2.64442  0.28946     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   1.01448  1.11006  1.95471  1.79419     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.81865  0.23582  2.88868  2.35662     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.81865  0.23582  2.88868  2.35662     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   0.23862  2.84929  2.43386  2.70756     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.57915  2.25909  2.64442  0.28946     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_twelve_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 16:15:47 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3193425339
+STATS LOCAL MSV       -7.4743  0.72839
+STATS LOCAL VITERBI   -8.4610  0.72839
+STATS LOCAL FORWARD   -3.5279  0.72839
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.18443  1.58899  1.49130  1.32852
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.57915  2.25909  2.64442  0.28946      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   0.23862  2.84929  2.43386  2.70756      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.81865  0.23582  2.88868  2.35662     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.53331  3.02441  0.20344  2.88069     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   0.23862  2.84929  2.43386  2.70756     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.57915  2.25909  2.64442  0.28946     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.81865  0.23582  2.88868  2.35662     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.57915  2.25909  2.64442  0.28946     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.57915  2.25909  2.64442  0.28946     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   2.57915  2.25909  2.64442  0.28946     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.57915  2.25909  2.64442  0.28946     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.81865  0.23582  2.88868  2.35662     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   0.23862  2.84929  2.43386  2.70756     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.81865  0.23582  2.88868  2.35662     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.53331  3.02441  0.20344  2.88069     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   0.23862  2.84929  2.43386  2.70756     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   2.53331  3.02441  0.20344  2.88069     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   0.23862  2.84929  2.43386  2.70756     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.53331  3.02441  0.20344  2.88069     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.53331  3.02441  0.20344  2.88069     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Tracheophyta_58S_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Fri Feb 17 15:55:14 2012
+NSEQ  33
+EFFN  4.088745
+CKSUM 2745058666
+STATS LOCAL MSV       -7.3007  0.71933
+STATS LOCAL VITERBI   -7.4981  0.71933
+STATS LOCAL FORWARD   -4.0745  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.24255  1.32691  1.51870  1.48254
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  0.00000        *
+      1   3.08151  0.26039  3.14187  1.96496      1 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     44   0.11631  3.59700  2.94148  3.51985     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03232  4.14135  4.14135  1.46634  0.26236  1.09861  0.40547
+     45   3.68053  0.10420  3.71889  3.00607     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01629  4.12532        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_eight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:11:54 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4159611321
+STATS LOCAL MSV       -7.6630  0.72772
+STATS LOCAL VITERBI   -8.2445  0.72772
+STATS LOCAL FORWARD   -3.1773  0.72772
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39536  1.28586  1.21082  1.72659
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
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+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
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+      4   2.81865  0.23582  2.88868  2.35662      4 - -
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+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_eighteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:20:42 2012
+NSEQ  33
+EFFN  3.331421
+CKSUM 3818006769
+STATS LOCAL MSV       -8.2061  0.71933
+STATS LOCAL VITERBI   -7.9142  0.71933
+STATS LOCAL FORWARD   -3.6602  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33233  1.18916  1.25067  1.92862
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  0.00000        *
+      1   0.14153  3.38306  2.80374  3.28498      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+      2   2.57793  1.52098  2.64414  0.45491      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+      3   2.94948  3.59059  0.11685  3.49555      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+      4   3.43633  0.12982  3.48565  2.83134      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+      5   2.94948  3.59059  0.11685  3.49555      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+      6   0.14153  3.38306  2.80374  3.28498      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+      7   3.43633  0.12982  3.48565  2.83134      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+      8   3.43633  0.12982  3.48565  2.83134      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+      9   3.43633  0.12982  3.48565  2.83134      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     10   3.43633  0.12982  3.48565  2.83134     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     11   0.14153  3.38306  2.80374  3.28498     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     12   2.94948  3.59059  0.11685  3.49555     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     13   2.94948  3.59059  0.11685  3.49555     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     14   0.14153  3.38306  2.80374  3.28498     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     15   2.41105  1.01266  2.48283  0.76891     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     16   2.94948  3.59059  0.11685  3.49555     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     17   2.94948  3.59059  0.11685  3.49555     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     18   2.81354  3.03622  0.16108  3.19986     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     19   3.43633  0.12982  3.48565  2.83134     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     20   2.94948  3.59059  0.11685  3.49555     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     21   0.14153  3.38306  2.80374  3.28498     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     22   2.94948  3.59059  0.11685  3.49555     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     23   0.14153  3.38306  2.80374  3.28498     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     24   3.43633  0.12982  3.48565  2.83134     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     25   3.43633  0.12982  3.48565  2.83134     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     26   0.14153  3.38306  2.80374  3.28498     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     27   3.43633  0.12982  3.48565  2.83134     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     28   3.43633  0.12982  3.48565  2.83134     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     29   3.43633  0.12982  3.48565  2.83134     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     30   2.94948  3.59059  0.11685  3.49555     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     31   3.43633  0.12982  3.48565  2.83134     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     32   3.17556  0.19247  3.23275  2.36594     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     33   2.94948  3.59059  0.11685  3.49555     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     34   0.14153  3.38306  2.80374  3.28498     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     35   2.94948  3.59059  0.11685  3.49555     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     36   3.09143  2.59694  3.13948  0.17822     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     37   3.09143  2.59694  3.13948  0.17822     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     38   3.09143  2.59694  3.13948  0.17822     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     39   0.14153  3.38306  2.80374  3.28498     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     40   0.14153  3.38306  2.80374  3.28498     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     41   2.94948  3.59059  0.11685  3.49555     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     42   3.43633  0.12982  3.48565  2.83134     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     43   0.14153  3.38306  2.80374  3.28498     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     44   3.09143  2.59694  3.13948  0.17822     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03683  4.01303  4.01303  1.46634  0.26236  1.09861  0.40547
+     45   0.14153  3.38306  2.80374  3.28498     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01858  3.99479        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_elevena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:14:33 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 200537437
+STATS LOCAL MSV       -7.4731  0.72765
+STATS LOCAL VITERBI   -8.1305  0.72765
+STATS LOCAL FORWARD   -3.3552  0.72765
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40083  1.29332  1.32030  1.55025
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_elevenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:14:40 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 4000050501
+STATS LOCAL MSV       -7.5058  0.72832
+STATS LOCAL VITERBI   -8.1521  0.72832
+STATS LOCAL FORWARD   -3.3219  0.72832
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34045  1.32657  1.37234  1.51698
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   0.23862  2.84929  2.43386  2.70756     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.15554  1.00938  2.23102  0.88601     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_elevenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:14:47 2012
+NSEQ  6
+EFFN  3.295898
+CKSUM 3809853014
+STATS LOCAL MSV       -8.2212  0.71931
+STATS LOCAL VITERBI   -7.9664  0.71931
+STATS LOCAL FORWARD   -3.6492  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33326  1.18308  1.24824  1.94465
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  0.00000        *
+      1   0.14304  3.37165  2.79633  3.27250      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+      2   2.40035  0.95194  2.47256  0.82336      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+      3   2.94151  3.57901  0.11812  3.48277      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+      4   3.42318  0.13140  3.47306  2.82176      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+      5   2.94151  3.57901  0.11812  3.48277      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+      6   0.14304  3.37165  2.79633  3.27250      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+      7   3.42318  0.13140  3.47306  2.82176      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+      8   3.42318  0.13140  3.47306  2.82176      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+      9   3.42318  0.13140  3.47306  2.82176      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     10   3.42318  0.13140  3.47306  2.82176     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     11   0.14304  3.37165  2.79633  3.27250     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     12   2.94151  3.57901  0.11812  3.48277     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     13   2.94151  3.57901  0.11812  3.48277     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     14   0.14304  3.37165  2.79633  3.27250     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     15   2.49506  1.35028  2.56376  0.54245     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     16   2.94151  3.57901  0.11812  3.48277     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     17   2.94151  3.57901  0.11812  3.48277     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     18   2.94151  3.57901  0.11812  3.48277     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     19   3.42318  0.13140  3.47306  2.82176     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     20   2.94151  3.57901  0.11812  3.48277     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     21   0.14304  3.37165  2.79633  3.27250     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     22   2.94151  3.57901  0.11812  3.48277     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     23   0.14304  3.37165  2.79633  3.27250     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     24   3.42318  0.13140  3.47306  2.82176     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     25   3.42318  0.13140  3.47306  2.82176     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     26   0.14304  3.37165  2.79633  3.27250     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     27   3.42318  0.13140  3.47306  2.82176     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     28   3.42318  0.13140  3.47306  2.82176     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     29   3.42318  0.13140  3.47306  2.82176     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     30   2.94151  3.57901  0.11812  3.48277     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     31   3.42318  0.13140  3.47306  2.82176     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     32   3.42318  0.13140  3.47306  2.82176     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     33   2.94151  3.57901  0.11812  3.48277     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     34   0.14304  3.37165  2.79633  3.27250     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     35   2.94151  3.57901  0.11812  3.48277     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     36   3.07992  2.58962  3.12841  0.18008     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     37   3.07992  2.58962  3.12841  0.18008     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     38   3.07992  2.58962  3.12841  0.18008     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     39   0.14304  3.37165  2.79633  3.27250     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     40   0.14304  3.37165  2.79633  3.27250     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     41   2.94151  3.57901  0.11812  3.48277     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     42   3.42318  0.13140  3.47306  2.82176     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     43   0.14304  3.37165  2.79633  3.27250     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     44   3.07992  2.58962  3.12841  0.18008     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03707  4.00659  4.00659  1.46634  0.26236  1.09861  0.40547
+     45   0.14304  3.37165  2.79633  3.27250     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01871  3.98822        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_elevend_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:14:53 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3816763266
+STATS LOCAL MSV       -7.6158  0.72756
+STATS LOCAL VITERBI   -8.0459  0.72756
+STATS LOCAL FORWARD   -3.4869  0.72756
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.45842  1.29740  1.26599  1.55024
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.81865  0.23582  2.88868  2.35662     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_elevene_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:15:00 2012
+NSEQ  95
+EFFN  3.325348
+CKSUM 977022747
+STATS LOCAL MSV       -8.2525  0.71931
+STATS LOCAL VITERBI   -7.5496  0.71931
+STATS LOCAL FORWARD   -4.0188  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39073  1.34440  1.20697  1.65387
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  0.00000        *
+      1   0.14178  3.38112  2.80248  3.28286      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+      2   2.81301  0.33032  2.87951  1.80109      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+      3   2.94812  3.58862  0.11706  3.49338      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+      4   0.14178  3.38112  2.80248  3.28286      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+      5   2.94812  3.58862  0.11706  3.49338      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+      6   0.14178  3.38112  2.80248  3.28286      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+      7   3.43409  0.13009  3.48351  2.82971      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+      8   3.43409  0.13009  3.48351  2.82971      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+      9   3.08947  2.59569  3.13759  0.17854      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     10   3.43409  0.13009  3.48351  2.82971     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     11   0.14178  3.38112  2.80248  3.28286     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     12   2.94812  3.58862  0.11706  3.49338     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     13   2.94812  3.58862  0.11706  3.49338     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     14   3.08947  2.59569  3.13759  0.17854     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     15   3.43409  0.13009  3.48351  2.82971     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     16   0.14178  3.38112  2.80248  3.28286     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     17   2.75201  3.20744  0.18382  2.75424     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     18   2.94812  3.58862  0.11706  3.49338     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     19   3.43409  0.13009  3.48351  2.82971     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     20   2.94812  3.58862  0.11706  3.49338     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     21   2.94812  3.58862  0.11706  3.49338     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     22   2.94812  3.58862  0.11706  3.49338     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     23   2.94812  3.58862  0.11706  3.49338     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     24   3.43409  0.13009  3.48351  2.82971     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     25   3.08947  2.59569  3.13759  0.17854     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     26   0.14178  3.38112  2.80248  3.28286     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     27   3.43409  0.13009  3.48351  2.82971     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     28   3.43409  0.13009  3.48351  2.82971     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     29   3.43409  0.13009  3.48351  2.82971     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     30   2.94812  3.58862  0.11706  3.49338     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     31   3.43409  0.13009  3.48351  2.82971     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     32   3.08947  2.59569  3.13759  0.17854     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     33   2.94812  3.58862  0.11706  3.49338     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     34   0.14178  3.38112  2.80248  3.28286     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     35   2.00758  3.04727  0.26875  2.92129     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     36   3.08947  2.59569  3.13759  0.17854     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     37   3.08947  2.59569  3.13759  0.17854     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     38   3.08947  2.59569  3.13759  0.17854     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     39   0.14178  3.38112  2.80248  3.28286     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     40   0.14178  3.38112  2.80248  3.28286     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     41   2.58108  3.40516  0.15757  3.29989     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     42   3.43409  0.13009  3.48351  2.82971     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     43   0.14178  3.38112  2.80248  3.28286     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     44   3.08947  2.59569  3.13759  0.17854     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03687  4.01193  4.01193  1.46634  0.26236  1.09861  0.40547
+     45   0.14178  3.38112  2.80248  3.28286     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01860  3.99367        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_elevenf_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:15:07 2012
+NSEQ  4
+EFFN  3.152344
+CKSUM 36996361
+STATS LOCAL MSV       -8.2659  0.71931
+STATS LOCAL VITERBI   -7.8471  0.71931
+STATS LOCAL FORWARD   -3.9177  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40470  1.27199  1.25449  1.66568
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  0.00000        *
+      1   0.14954  3.32415  2.76532  3.22056      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      2   3.36834  0.13821  3.42049  2.78160      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      3   2.90797  3.53050  0.12362  3.42932      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      4   3.36834  0.13821  3.42049  2.78160      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      5   2.90797  3.53050  0.12362  3.42932      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      6   0.14954  3.32415  2.76532  3.22056      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      7   3.36834  0.13821  3.42049  2.78160      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      8   3.36834  0.13821  3.42049  2.78160      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      9   3.36834  0.13821  3.42049  2.78160      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     10   3.36834  0.13821  3.42049  2.78160     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     11   0.14954  3.32415  2.76532  3.22056     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     12   2.90797  3.53050  0.12362  3.42932     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     13   2.90797  3.53050  0.12362  3.42932     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     14   3.03232  2.55926  3.08260  0.18802     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     15   3.36834  0.13821  3.42049  2.78160     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     16   0.14954  3.32415  2.76532  3.22056     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     17   2.90797  3.53050  0.12362  3.42932     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     18   2.90797  3.53050  0.12362  3.42932     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     19   3.36834  0.13821  3.42049  2.78160     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     20   2.90797  3.53050  0.12362  3.42932     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     21   2.90797  3.53050  0.12362  3.42932     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     22   2.90797  3.53050  0.12362  3.42932     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     23   2.90797  3.53050  0.12362  3.42932     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     24   3.03232  2.55926  3.08260  0.18802     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     25   3.03232  2.55926  3.08260  0.18802     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     26   0.14954  3.32415  2.76532  3.22056     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     27   3.36834  0.13821  3.42049  2.78160     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     28   3.36834  0.13821  3.42049  2.78160     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     29   3.36834  0.13821  3.42049  2.78160     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     30   2.90797  3.53050  0.12362  3.42932     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     31   3.36834  0.13821  3.42049  2.78160     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     32   3.03232  2.55926  3.08260  0.18802     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     33   2.90797  3.53050  0.12362  3.42932     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     34   0.14954  3.32415  2.76532  3.22056     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     35   0.14954  3.32415  2.76532  3.22056     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     36   3.03232  2.55926  3.08260  0.18802     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     37   3.03232  2.55926  3.08260  0.18802     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     38   3.03232  2.55926  3.08260  0.18802     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     39   0.14954  3.32415  2.76532  3.22056     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     40   0.14954  3.32415  2.76532  3.22056     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     41   2.90797  3.53050  0.12362  3.42932     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     42   3.36834  0.13821  3.42049  2.78160     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     43   0.14954  3.32415  2.76532  3.22056     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     44   3.03232  2.55926  3.08260  0.18802     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     45   0.14954  3.32415  2.76532  3.22056     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01922  3.96126        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_eleveng_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:15:15 2012
+NSEQ  344
+EFFN  4.233337
+CKSUM 1202060389
+STATS LOCAL MSV       -6.8339  0.71933
+STATS LOCAL VITERBI   -7.6903  0.71933
+STATS LOCAL FORWARD   -3.9091  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.44187  1.24554  1.23728  1.68439
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  0.00000        *
+      1   1.20841  1.13138  1.91937  1.46084      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+      2   1.97635  0.81204  2.05225  1.24124      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+      3   2.75429  3.48717  0.13644  3.40216      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+      4   2.96058  0.21395  3.02381  2.38373      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+      5   3.07463  3.74265  0.10550  3.49902      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+      6   0.12189  3.59463  2.85353  3.51840      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+      7   3.61242  0.12118  3.65360  2.79289      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+      8   3.72015  0.10061  3.75665  3.03400      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+      9   3.35125  0.18106  3.40307  2.32989      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     10   3.50821  0.13083  3.33406  2.86402     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     11   0.13598  3.48607  2.90585  3.17447     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     12   3.11636  3.83684  0.09317  3.76856     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     13   3.11636  3.83684  0.09317  3.76856     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     14   3.29803  2.61097  3.33834  0.15772     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     15   3.72015  0.10061  3.75665  3.03400     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     16   0.11265  3.63223  2.96414  3.55860     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     17   3.07489  3.74322  0.10542  3.50050     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     18   2.80390  3.71556  0.11793  3.63713     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     19   3.54721  0.13460  3.59123  2.66547     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     20   3.11636  3.83684  0.09317  3.76856     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     21   2.89306  3.09339  0.14401  3.40010     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     22   3.11636  3.83684  0.09317  3.76856     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     23   0.27775  3.11797  1.90629  3.00308     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     24   2.43721  0.67127  2.57917  1.12177     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     25   2.83665  1.95088  2.97818  0.28989     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     26   0.11265  3.63223  2.96414  3.55860     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     27   3.72015  0.10061  3.75665  3.03400     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     28   3.72015  0.10061  3.75665  3.03400     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     29   3.72015  0.10061  3.75665  3.03400     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     30   3.11636  3.83684  0.09317  3.76856     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     31   3.72015  0.10061  3.75665  3.03400     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     32   3.24554  2.47422  3.28838  0.17494     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     33   3.11636  3.83684  0.09317  3.76856     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     34   0.11265  3.63223  2.96414  3.55860     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     35   2.13801  3.33567  0.21466  3.22624     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     36   3.35066  2.76152  3.38856  0.14158     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     37   3.35066  2.76152  3.38856  0.14158     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     38   3.35066  2.76152  3.38856  0.14158     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     39   0.11265  3.63223  2.96414  3.55860     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     40   0.11265  3.63223  2.96414  3.55860     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     41   3.11636  3.83684  0.09317  3.76856     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     42   3.72015  0.10061  3.75665  3.03400     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     43   0.11265  3.63223  2.96414  3.55860     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     44   3.35066  2.76152  3.38856  0.14158     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03158  4.16408  4.16408  1.46634  0.26236  1.09861  0.40547
+     45   0.12194  3.59444  2.85299  3.51819     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01592  4.14841        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_fifteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:16:00 2012
+NSEQ  92
+EFFN  3.287720
+CKSUM 1199922528
+STATS LOCAL MSV       -8.2231  0.71932
+STATS LOCAL VITERBI   -7.6942  0.71932
+STATS LOCAL FORWARD   -3.9730  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33730  1.39990  1.25149  1.58599
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  0.00000        *
+      1   0.14339  3.36900  2.79461  3.26960      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+      2   2.99535  2.39116  3.04673  0.20956      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+      3   2.93966  3.57632  0.11842  3.47981      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+      4   0.14339  3.36900  2.79461  3.26960      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+      5   2.93966  3.57632  0.11842  3.47981      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+      6   0.14339  3.36900  2.79461  3.26960      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+      7   3.42013  0.13177  3.47014  2.81954      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+      8   3.42013  0.13177  3.47014  2.81954      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+      9   3.07726  2.58792  3.12585  0.18052      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     10   3.42013  0.13177  3.47014  2.81954     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     11   0.14339  3.36900  2.79461  3.26960     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     12   2.79119  3.50709  0.13291  3.40756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     13   2.93966  3.57632  0.11842  3.47981     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     14   3.07726  2.58792  3.12585  0.18052     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     15   3.42013  0.13177  3.47014  2.81954     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     16   0.14339  3.36900  2.79461  3.26960     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     17   2.93966  3.57632  0.11842  3.47981     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     18   2.72590  3.47419  0.14014  3.37283     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     19   3.42013  0.13177  3.47014  2.81954     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     20   2.93966  3.57632  0.11842  3.47981     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     21   2.93966  3.57632  0.11842  3.47981     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     22   2.93966  3.57632  0.11842  3.47981     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     23   2.50408  3.35218  0.16935  3.24339     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     24   3.07462  0.17317  3.25355  2.60153     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     25   3.07726  2.58792  3.12585  0.18052     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     26   0.14339  3.36900  2.79461  3.26960     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     27   3.42013  0.13177  3.47014  2.81954     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     28   3.42013  0.13177  3.47014  2.81954     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     29   3.42013  0.13177  3.47014  2.81954     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     30   2.93966  3.57632  0.11842  3.47981     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     31   3.42013  0.13177  3.47014  2.81954     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     32   3.07726  2.58792  3.12585  0.18052     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     33   2.93966  3.57632  0.11842  3.47981     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     34   0.14339  3.36900  2.79461  3.26960     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     35   0.24643  3.04265  2.14536  2.92474     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     36   3.07726  2.58792  3.12585  0.18052     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     37   3.07726  2.58792  3.12585  0.18052     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     38   3.07726  2.58792  3.12585  0.18052     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     39   0.14339  3.36900  2.79461  3.26960     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     40   0.14339  3.36900  2.79461  3.26960     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     41   2.93966  3.57632  0.11842  3.47981     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     42   3.42013  0.13177  3.47014  2.81954     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     43   0.14339  3.36900  2.79461  3.26960     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     44   3.07726  2.58792  3.12585  0.18052     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03713  4.00510  4.00510  1.46634  0.26236  1.09861  0.40547
+     45   0.14339  3.36900  2.79461  3.26960     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01874  3.98671        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:11:27 2012
+NSEQ  157
+EFFN  4.201935
+CKSUM 3581575669
+STATS LOCAL MSV       -6.8273  0.71932
+STATS LOCAL VITERBI   -7.7042  0.71932
+STATS LOCAL FORWARD   -3.8808  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.46106  1.23380  1.22309  1.70095
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  0.00000        *
+      1   1.32983  0.93942  2.06623  1.52344      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+      2   1.85908  0.77789  2.05547  1.35954      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+      3   3.06034  3.71507  0.10895  3.44195      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+      4   2.46516  0.30189  2.72397  2.20751      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+      5   3.11149  3.82961  0.09379  3.76052      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+      6   0.11342  3.62471  2.95930  3.55034      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+      7   3.71171  0.10136  3.74861  3.02806      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+      8   3.71171  0.10136  3.74861  3.02806      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+      9   3.32228  0.18765  3.37511  2.29447      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     10   3.71171  0.10136  3.74861  3.02806     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     11   0.11342  3.62471  2.95930  3.55034     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     12   3.11149  3.82961  0.09379  3.76052     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     13   3.11149  3.82961  0.09379  3.76052     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     14   3.25469  2.51402  3.29698  0.17023     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     15   3.71171  0.10136  3.74861  3.02806     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     16   0.11342  3.62471  2.95930  3.55034     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     17   2.75306  3.68610  0.12329  3.60497     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     18   2.89640  3.54949  0.13581  3.14576     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     19   3.54044  0.13509  3.58471  2.66477     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     20   3.11149  3.82961  0.09379  3.76052     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     21   2.97710  3.12600  0.13567  3.44093     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     22   3.11149  3.82961  0.09379  3.76052     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     23   0.60645  2.70802  1.16635  2.56984     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     24   2.55747  0.37986  2.78908  1.73123     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     25   3.11326  2.18476  3.16216  0.22226     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     26   0.11342  3.62471  2.95930  3.55034     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     27   3.71171  0.10136  3.74861  3.02806     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     28   3.71171  0.10136  3.74861  3.02806     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     29   3.71171  0.10136  3.74861  3.02806     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     30   3.11149  3.82961  0.09379  3.76052     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     31   3.44260  0.13868  3.16422  2.89555     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     32   3.11580  2.67240  2.84404  0.18828     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     33   3.11149  3.82961  0.09379  3.76052     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     34   0.11342  3.62471  2.95930  3.55034     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     35   2.41235  3.50416  0.16583  3.40734     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     36   3.34261  2.75638  3.38083  0.14258     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     37   3.34261  2.75638  3.38083  0.14258     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     38   3.34261  2.75638  3.38083  0.14258     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     39   0.11342  3.62471  2.95930  3.55034     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     40   0.11342  3.62471  2.95930  3.55034     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     41   3.11149  3.82961  0.09379  3.76052     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     42   3.71171  0.10136  3.74861  3.02806     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     43   0.11342  3.62471  2.95930  3.55034     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     44   3.34261  2.75638  3.38083  0.14258     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03174  4.15918  4.15918  1.46634  0.26236  1.09861  0.40547
+     45   0.11342  3.62471  2.95930  3.55034     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01600  4.14344        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:11:19 2012
+NSEQ  19
+EFFN  3.363037
+CKSUM 3416317619
+STATS LOCAL MSV       -8.2126  0.71933
+STATS LOCAL VITERBI   -7.7490  0.71933
+STATS LOCAL FORWARD   -3.7875  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39475  1.27161  1.18437  1.79704
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  0.00000        *
+      1   0.14021  3.39310  2.81025  3.29598      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+      2   3.10158  2.60339  3.14924  0.17660      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+      3   2.95646  3.60076  0.11575  3.50679      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+      4   3.44789  0.12846  3.49672  2.83975      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+      5   2.95646  3.60076  0.11575  3.50679      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+      6   0.14021  3.39310  2.81025  3.29598      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+      7   3.44789  0.12846  3.49672  2.83975      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+      8   3.44789  0.12846  3.49672  2.83975      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+      9   3.44789  0.12846  3.49672  2.83975      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     10   3.44789  0.12846  3.49672  2.83975     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     11   0.14021  3.39310  2.81025  3.29598     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     12   2.95646  3.60076  0.11575  3.50679     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     13   2.95646  3.60076  0.11575  3.50679     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     14   0.14021  3.39310  2.81025  3.29598     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     15   2.83330  2.01058  2.89091  0.28536     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     16   2.95646  3.60076  0.11575  3.50679     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     17   2.95646  3.60076  0.11575  3.50679     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     18   2.95646  3.60076  0.11575  3.50679     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     19   3.44789  0.12846  3.49672  2.83975     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     20   2.95646  3.60076  0.11575  3.50679     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     21   0.14021  3.39310  2.81025  3.29598     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     22   2.95646  3.60076  0.11575  3.50679     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     23   2.95646  3.60076  0.11575  3.50679     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     24   2.36268  0.48681  2.04280  1.82275     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     25   3.44789  0.12846  3.49672  2.83975     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     26   0.14021  3.39310  2.81025  3.29598     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     27   3.44789  0.12846  3.49672  2.83975     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     28   3.44789  0.12846  3.49672  2.83975     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     29   3.44789  0.12846  3.49672  2.83975     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     30   2.95646  3.60076  0.11575  3.50679     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     31   3.44789  0.12846  3.49672  2.83975     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     32   2.44542  1.16167  2.51596  0.65477     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     33   2.95646  3.60076  0.11575  3.50679     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     34   0.14021  3.39310  2.81025  3.29598     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     35   2.95646  3.60076  0.11575  3.50679     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     36   3.10158  2.60339  3.14924  0.17660     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     37   3.10158  2.60339  3.14924  0.17660     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     38   3.10158  2.60339  3.14924  0.17660     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     39   0.14021  3.39310  2.81025  3.29598     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     40   0.14021  3.39310  2.81025  3.29598     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     41   2.95646  3.60076  0.11575  3.50679     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     42   3.44789  0.12846  3.49672  2.83975     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     43   0.14021  3.39310  2.81025  3.29598     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     44   3.10158  2.60339  3.14924  0.17660     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03661  4.01873  4.01873  1.46634  0.26236  1.09861  0.40547
+     45   0.14021  3.39310  2.81025  3.29598     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01847  4.00059        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_fourteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:15:51 2012
+NSEQ  140
+EFFN  4.627075
+CKSUM 3011099649
+STATS LOCAL MSV       -6.6527  0.71932
+STATS LOCAL VITERBI   -7.6496  0.71932
+STATS LOCAL FORWARD   -3.9115  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.43118  1.23274  1.27380  1.66224
+          1.38629  1.38629  1.38629  1.38629
+          0.02973  4.22348  4.22348  1.46634  0.26236  0.00000        *
+      1   1.37717  1.60803  2.10525  0.85423      1 - -
+          1.38629  1.38629  1.38629  1.38629
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+          1.38629  1.38629  1.38629  1.38629
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+     43   0.10403  3.72055  3.02131  3.65575     43 - -
+          1.38629  1.38629  1.38629  1.38629
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+     44   3.44646  2.82292  3.48058  0.13020     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02973  4.22348  4.22348  1.46634  0.26236  1.09861  0.40547
+     45   0.10403  3.72055  3.02131  3.65575     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01498  4.20873        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_ninea_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:12:04 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3826483507
+STATS LOCAL MSV       -7.6397  0.72761
+STATS LOCAL VITERBI   -8.2800  0.72761
+STATS LOCAL FORWARD   -3.2833  0.72761
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34637  1.24605  1.37655  1.61078
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
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+      2   2.81865  0.23582  2.88868  2.35662      2 - -
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+      3   2.53331  3.02441  0.20344  2.88069      3 - -
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+      4   0.23862  2.84929  2.43386  2.70756      4 - -
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+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_nineb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:12:11 2012
+NSEQ  18
+EFFN  3.133301
+CKSUM 1046412576
+STATS LOCAL MSV       -8.2028  0.71931
+STATS LOCAL VITERBI   -7.6692  0.71931
+STATS LOCAL FORWARD   -4.0356  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47236  1.33687  1.14083  1.66921
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  0.00000        *
+      1   0.15045  3.31767  2.76107  3.21348      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+      2   3.36085  0.13917  3.41331  2.77609      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+      3   2.90335  3.52386  0.12440  3.42200      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+      4   2.90335  3.52386  0.12440  3.42200      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+      5   2.90335  3.52386  0.12440  3.42200      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+      6   0.15045  3.31767  2.76107  3.21348      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+      7   3.36085  0.13917  3.41331  2.77609      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+      8   3.36085  0.13917  3.41331  2.77609      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+      9   3.02586  2.55514  3.07640  0.18913      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     10   3.36085  0.13917  3.41331  2.77609     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     11   0.15045  3.31767  2.76107  3.21348     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     12   2.90335  3.52386  0.12440  3.42200     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     13   2.90335  3.52386  0.12440  3.42200     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     14   3.02586  2.55514  3.07640  0.18913     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     15   3.36085  0.13917  3.41331  2.77609     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     16   0.15045  3.31767  2.76107  3.21348     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     17   2.90335  3.52386  0.12440  3.42200     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     18   2.90335  3.52386  0.12440  3.42200     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     19   3.36085  0.13917  3.41331  2.77609     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     20   2.90335  3.52386  0.12440  3.42200     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     21   2.90335  3.52386  0.12440  3.42200     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     22   2.90335  3.52386  0.12440  3.42200     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     23   2.90335  3.52386  0.12440  3.42200     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     24   3.36085  0.13917  3.41331  2.77609     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     25   3.02586  2.55514  3.07640  0.18913     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     26   0.15045  3.31767  2.76107  3.21348     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     27   3.36085  0.13917  3.41331  2.77609     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     28   3.36085  0.13917  3.41331  2.77609     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     29   3.36085  0.13917  3.41331  2.77609     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     30   2.90335  3.52386  0.12440  3.42200     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     31   3.36085  0.13917  3.41331  2.77609     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     32   3.02586  2.55514  3.07640  0.18913     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     33   2.90335  3.52386  0.12440  3.42200     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     34   0.15045  3.31767  2.76107  3.21348     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     35   2.90335  3.52386  0.12440  3.42200     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     36   3.02586  2.55514  3.07640  0.18913     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     37   3.02586  2.55514  3.07640  0.18913     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     38   3.02586  2.55514  3.07640  0.18913     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     39   0.15045  3.31767  2.76107  3.21348     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     40   0.15045  3.31767  2.76107  3.21348     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     41   2.90335  3.52386  0.12440  3.42200     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     42   3.36085  0.13917  3.41331  2.77609     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     43   0.15045  3.31767  2.76107  3.21348     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     44   3.02586  2.55514  3.07640  0.18913     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03822  3.97656  3.97656  1.46634  0.26236  1.09861  0.40547
+     45   0.15045  3.31767  2.76107  3.21348     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01929  3.95763        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_ninec_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:12:17 2012
+NSEQ  28
+EFFN  3.195801
+CKSUM 3247683125
+STATS LOCAL MSV       -8.1990  0.71931
+STATS LOCAL VITERBI   -7.6999  0.71931
+STATS LOCAL FORWARD   -3.8686  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.48734  1.27164  1.19063  1.66271
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  0.00000        *
+      1   0.31838  2.86951  1.88725  2.74175      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+      2   3.04692  2.56858  3.09666  0.18555      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+      3   2.91836  3.54548  0.12189  3.44581      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+      4   3.38523  0.13607  3.43670  2.79401      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+      5   2.91836  3.54548  0.12189  3.44581      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+      6   0.14750  3.33877  2.77489  3.23653      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+      7   3.38523  0.13607  3.43670  2.79401      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+      8   3.38523  0.13607  3.43670  2.79401      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+      9   3.38523  0.13607  3.43670  2.79401      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     10   3.38523  0.13607  3.43670  2.79401     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     11   0.14750  3.33877  2.77489  3.23653     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     12   2.91836  3.54548  0.12189  3.44581     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     13   2.91836  3.54548  0.12189  3.44581     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     14   3.04692  2.56858  3.09666  0.18555     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     15   3.38523  0.13607  3.43670  2.79401     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     16   0.14750  3.33877  2.77489  3.23653     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     17   2.91836  3.54548  0.12189  3.44581     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     18   2.91836  3.54548  0.12189  3.44581     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     19   3.38523  0.13607  3.43670  2.79401     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     20   2.91836  3.54548  0.12189  3.44581     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     21   2.91836  3.54548  0.12189  3.44581     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     22   2.91836  3.54548  0.12189  3.44581     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     23   2.91836  3.54548  0.12189  3.44581     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     24   3.38523  0.13607  3.43670  2.79401     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     25   3.04692  2.56858  3.09666  0.18555     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     26   0.14750  3.33877  2.77489  3.23653     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     27   3.38523  0.13607  3.43670  2.79401     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     28   3.38523  0.13607  3.43670  2.79401     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     29   3.38523  0.13607  3.43670  2.79401     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     30   2.91836  3.54548  0.12189  3.44581     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     31   3.38523  0.13607  3.43670  2.79401     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     32   3.04692  2.56858  3.09666  0.18555     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     33   2.91836  3.54548  0.12189  3.44581     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     34   0.14750  3.33877  2.77489  3.23653     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     35   2.91836  3.54548  0.12189  3.44581     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     36   3.04692  2.56858  3.09666  0.18555     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     37   3.04692  2.56858  3.09666  0.18555     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     38   3.04692  2.56858  3.09666  0.18555     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     39   0.14750  3.33877  2.77489  3.23653     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     40   0.14750  3.33877  2.77489  3.23653     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     41   2.91836  3.54548  0.12189  3.44581     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     42   3.38523  0.13607  3.43670  2.79401     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     43   0.14750  3.33877  2.77489  3.23653     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     44   3.04692  2.56858  3.09666  0.18555     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
+     45   0.14750  3.33877  2.77489  3.23653     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01906  3.96950        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_nined_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:12:22 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1933484248
+STATS LOCAL MSV       -7.3520  0.72782
+STATS LOCAL VITERBI   -8.2066  0.72782
+STATS LOCAL FORWARD   -3.1788  0.72782
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.29226  1.29514  1.43530  1.54437
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.57915  2.25909  2.64442  0.28946      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   0.23862  2.84929  2.43386  2.70756     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.81865  0.23582  2.88868  2.35662     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_ninee_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:12:27 2012
+NSEQ  4
+EFFN  3.152344
+CKSUM 2253024799
+STATS LOCAL MSV       -8.1865  0.71933
+STATS LOCAL VITERBI   -7.7862  0.71933
+STATS LOCAL FORWARD   -3.8179  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33648  1.33706  1.25226  1.66730
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  0.00000        *
+      1   0.14954  3.32415  2.76532  3.22056      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      2   0.14954  3.32415  2.76532  3.22056      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      3   2.90797  3.53050  0.12362  3.42932      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      4   3.03232  2.55926  3.08260  0.18802      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      5   2.90797  3.53050  0.12362  3.42932      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      6   0.14954  3.32415  2.76532  3.22056      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      7   3.36834  0.13821  3.42049  2.78160      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      8   3.36834  0.13821  3.42049  2.78160      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+      9   3.36834  0.13821  3.42049  2.78160      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     10   3.36834  0.13821  3.42049  2.78160     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     11   0.14954  3.32415  2.76532  3.22056     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     12   2.90797  3.53050  0.12362  3.42932     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     13   2.90797  3.53050  0.12362  3.42932     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     14   3.03232  2.55926  3.08260  0.18802     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     15   3.36834  0.13821  3.42049  2.78160     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     16   0.14954  3.32415  2.76532  3.22056     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     17   2.90797  3.53050  0.12362  3.42932     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     18   2.90797  3.53050  0.12362  3.42932     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     19   3.36834  0.13821  3.42049  2.78160     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     20   2.90797  3.53050  0.12362  3.42932     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     21   2.90797  3.53050  0.12362  3.42932     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     22   2.90797  3.53050  0.12362  3.42932     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     23   0.14954  3.32415  2.76532  3.22056     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     24   3.36834  0.13821  3.42049  2.78160     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     25   3.03232  2.55926  3.08260  0.18802     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     26   0.14954  3.32415  2.76532  3.22056     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     27   3.36834  0.13821  3.42049  2.78160     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     28   3.36834  0.13821  3.42049  2.78160     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     29   3.36834  0.13821  3.42049  2.78160     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     30   2.90797  3.53050  0.12362  3.42932     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     31   3.36834  0.13821  3.42049  2.78160     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     32   3.03232  2.55926  3.08260  0.18802     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     33   2.90797  3.53050  0.12362  3.42932     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     34   0.14954  3.32415  2.76532  3.22056     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     35   2.90797  3.53050  0.12362  3.42932     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     36   3.03232  2.55926  3.08260  0.18802     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     37   3.03232  2.55926  3.08260  0.18802     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     38   3.03232  2.55926  3.08260  0.18802     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     39   0.14954  3.32415  2.76532  3.22056     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     40   0.14954  3.32415  2.76532  3.22056     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     41   2.90797  3.53050  0.12362  3.42932     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     42   3.36834  0.13821  3.42049  2.78160     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     43   0.14954  3.32415  2.76532  3.22056     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     44   3.03232  2.55926  3.08260  0.18802     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
+     45   0.14954  3.32415  2.76532  3.22056     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01922  3.96126        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_ninef_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:12:35 2012
+NSEQ  11
+EFFN  3.182373
+CKSUM 2259734906
+STATS LOCAL MSV       -8.2662  0.71933
+STATS LOCAL VITERBI   -7.7504  0.71933
+STATS LOCAL FORWARD   -3.8026  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.41753  1.21361  1.24880  1.75034
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  0.00000        *
+      1   0.14812  3.33427  2.77195  3.23162      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+      2   3.38004  0.13672  3.43172  2.79020      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+      3   2.91517  3.54088  0.12242  3.44074      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+      4   3.38004  0.13672  3.43172  2.79020      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+      5   2.91517  3.54088  0.12242  3.44074      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+      6   0.14812  3.33427  2.77195  3.23162      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+      7   3.38004  0.13672  3.43172  2.79020      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+      8   3.38004  0.13672  3.43172  2.79020      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+      9   3.38004  0.13672  3.43172  2.79020      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     10   3.38004  0.13672  3.43172  2.79020     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     11   0.14812  3.33427  2.77195  3.23162     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     12   2.91517  3.54088  0.12242  3.44074     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     13   2.91517  3.54088  0.12242  3.44074     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     14   3.04242  2.56572  3.09233  0.18630     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     15   3.38004  0.13672  3.43172  2.79020     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     16   0.14812  3.33427  2.77195  3.23162     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     17   0.32282  2.85901  1.87473  2.73070     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     18   2.91517  3.54088  0.12242  3.44074     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     19   3.38004  0.13672  3.43172  2.79020     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     20   2.91517  3.54088  0.12242  3.44074     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     21   2.91517  3.54088  0.12242  3.44074     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     22   2.91517  3.54088  0.12242  3.44074     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     23   2.91517  3.54088  0.12242  3.44074     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     24   3.38004  0.13672  3.43172  2.79020     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     25   3.04242  2.56572  3.09233  0.18630     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     26   0.14812  3.33427  2.77195  3.23162     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     27   3.38004  0.13672  3.43172  2.79020     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     28   3.38004  0.13672  3.43172  2.79020     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     29   3.38004  0.13672  3.43172  2.79020     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     30   2.91517  3.54088  0.12242  3.44074     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     31   3.38004  0.13672  3.43172  2.79020     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     32   3.04242  2.56572  3.09233  0.18630     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     33   2.91517  3.54088  0.12242  3.44074     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     34   0.14812  3.33427  2.77195  3.23162     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     35   2.91517  3.54088  0.12242  3.44074     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     36   3.04242  2.56572  3.09233  0.18630     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     37   3.04242  2.56572  3.09233  0.18630     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     38   3.04242  2.56572  3.09233  0.18630     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     39   0.14812  3.33427  2.77195  3.23162     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     40   0.14812  3.33427  2.77195  3.23162     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     41   2.91517  3.54088  0.12242  3.44074     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     42   3.38004  0.13672  3.43172  2.79020     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     43   0.14812  3.33427  2.77195  3.23162     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     44   3.04242  2.56572  3.09233  0.18630     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03787  3.98571  3.98571  1.46634  0.26236  1.09861  0.40547
+     45   0.14812  3.33427  2.77195  3.23162     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01911  3.96696        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_nineg_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:12:40 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 3180213690
+STATS LOCAL MSV       -7.9951  0.71983
+STATS LOCAL VITERBI   -7.7998  0.71983
+STATS LOCAL FORWARD   -3.7258  0.71983
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33644  1.34183  1.19530  1.75307
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   0.15719  3.27118  2.73043  3.16274     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_nineh_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:12:45 2012
+NSEQ  5
+EFFN  3.168945
+CKSUM 177826028
+STATS LOCAL MSV       -8.0764  0.71931
+STATS LOCAL VITERBI   -7.7650  0.71931
+STATS LOCAL FORWARD   -3.8765  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47768  1.27000  1.25567  1.57931
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  0.00000        *
+      1   3.03791  2.56284  3.08799  0.18707      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      2   3.03791  2.56284  3.08799  0.18707      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      3   2.91196  3.53626  0.12295  3.43565      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      4   3.37482  0.13738  3.42671  2.78637      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      5   2.91196  3.53626  0.12295  3.43565      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      6   0.14875  3.32976  2.76899  3.22669      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      7   3.37482  0.13738  3.42671  2.78637      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      8   3.37482  0.13738  3.42671  2.78637      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      9   3.37482  0.13738  3.42671  2.78637      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     10   3.37482  0.13738  3.42671  2.78637     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     11   0.14875  3.32976  2.76899  3.22669     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     12   2.91196  3.53626  0.12295  3.43565     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     13   2.91196  3.53626  0.12295  3.43565     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     14   3.03791  2.56284  3.08799  0.18707     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     15   3.37482  0.13738  3.42671  2.78637     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     16   0.14875  3.32976  2.76899  3.22669     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     17   2.91196  3.53626  0.12295  3.43565     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     18   2.91196  3.53626  0.12295  3.43565     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     19   3.37482  0.13738  3.42671  2.78637     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     20   2.91196  3.53626  0.12295  3.43565     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     21   2.91196  3.53626  0.12295  3.43565     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     22   2.91196  3.53626  0.12295  3.43565     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     23   0.14875  3.32976  2.76899  3.22669     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     24   3.03791  2.56284  3.08799  0.18707     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     25   3.37482  0.13738  3.42671  2.78637     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     26   0.14875  3.32976  2.76899  3.22669     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     27   3.37482  0.13738  3.42671  2.78637     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     28   3.37482  0.13738  3.42671  2.78637     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     29   3.37482  0.13738  3.42671  2.78637     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     30   2.91196  3.53626  0.12295  3.43565     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     31   3.37482  0.13738  3.42671  2.78637     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     32   3.03791  2.56284  3.08799  0.18707     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     33   2.91196  3.53626  0.12295  3.43565     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     34   0.14875  3.32976  2.76899  3.22669     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     35   2.91196  3.53626  0.12295  3.43565     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     36   3.03791  2.56284  3.08799  0.18707     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     37   3.03791  2.56284  3.08799  0.18707     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     38   3.03791  2.56284  3.08799  0.18707     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     39   0.14875  3.32976  2.76899  3.22669     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     40   0.14875  3.32976  2.76899  3.22669     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     41   2.91196  3.53626  0.12295  3.43565     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     42   3.37482  0.13738  3.42671  2.78637     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     43   0.14875  3.32976  2.76899  3.22669     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     44   3.03791  2.56284  3.08799  0.18707     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     45   0.14875  3.32976  2.76899  3.22669     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01916  3.96442        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_ninei_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:12:50 2012
+NSEQ  7
+EFFN  3.120605
+CKSUM 2734349611
+STATS LOCAL MSV       -8.1916  0.71933
+STATS LOCAL VITERBI   -7.7361  0.71933
+STATS LOCAL FORWARD   -3.7364  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47980  1.15880  1.25782  1.74766
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  0.00000        *
+      1   3.35584  0.13982  3.40850  2.77239      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+      2   3.35584  0.13982  3.40850  2.77239      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+      3   2.90025  3.51940  0.12492  3.41710      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+      4   3.02155  2.55238  3.07224  0.18988      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+      5   2.90025  3.51940  0.12492  3.41710      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+      6   0.15106  3.31333  2.75822  3.20874      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+      7   3.35584  0.13982  3.40850  2.77239      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+      8   3.35584  0.13982  3.40850  2.77239      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+      9   3.35584  0.13982  3.40850  2.77239      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     10   3.35584  0.13982  3.40850  2.77239     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     11   0.15106  3.31333  2.75822  3.20874     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     12   2.90025  3.51940  0.12492  3.41710     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     13   2.90025  3.51940  0.12492  3.41710     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     14   3.02155  2.55238  3.07224  0.18988     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     15   3.35584  0.13982  3.40850  2.77239     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     16   0.15106  3.31333  2.75822  3.20874     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     17   2.90025  3.51940  0.12492  3.41710     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     18   2.90025  3.51940  0.12492  3.41710     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     19   3.35584  0.13982  3.40850  2.77239     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     20   2.90025  3.51940  0.12492  3.41710     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     21   2.90025  3.51940  0.12492  3.41710     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     22   2.90025  3.51940  0.12492  3.41710     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     23   0.15106  3.31333  2.75822  3.20874     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     24   3.35584  0.13982  3.40850  2.77239     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     25   3.35584  0.13982  3.40850  2.77239     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     26   0.15106  3.31333  2.75822  3.20874     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     27   3.35584  0.13982  3.40850  2.77239     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     28   3.35584  0.13982  3.40850  2.77239     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     29   3.35584  0.13982  3.40850  2.77239     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     30   2.90025  3.51940  0.12492  3.41710     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     31   3.35584  0.13982  3.40850  2.77239     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     32   3.02155  2.55238  3.07224  0.18988     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     33   2.90025  3.51940  0.12492  3.41710     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     34   0.15106  3.31333  2.75822  3.20874     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     35   2.90025  3.51940  0.12492  3.41710     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     36   3.02155  2.55238  3.07224  0.18988     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     37   3.02155  2.55238  3.07224  0.18988     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     38   3.02155  2.55238  3.07224  0.18988     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     39   0.15106  3.31333  2.75822  3.20874     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     40   0.15106  3.31333  2.75822  3.20874     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     41   2.90025  3.51940  0.12492  3.41710     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     42   3.35584  0.13982  3.40850  2.77239     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     43   0.15106  3.31333  2.75822  3.20874     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     44   3.02155  2.55238  3.07224  0.18988     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03831  3.97417  3.97417  1.46634  0.26236  1.09861  0.40547
+     45   0.15106  3.31333  2.75822  3.20874     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01934  3.95520        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_ninej_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:12:54 2012
+NSEQ  4
+EFFN  3.136719
+CKSUM 1347985792
+STATS LOCAL MSV       -8.1185  0.71931
+STATS LOCAL VITERBI   -7.6324  0.71931
+STATS LOCAL FORWARD   -3.7644  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.41001  1.15750  1.31861  1.74823
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  0.00000        *
+      1   3.36220  0.13900  3.41461  2.77708      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+      2   3.36220  0.13900  3.41461  2.77708      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+      3   2.90418  3.52506  0.12426  3.42332      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+      4   3.36220  0.13900  3.41461  2.77708      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+      5   2.90418  3.52506  0.12426  3.42332      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+      6   0.15028  3.31884  2.76184  3.21476      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+      7   3.36220  0.13900  3.41461  2.77708      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+      8   3.36220  0.13900  3.41461  2.77708      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+      9   3.36220  0.13900  3.41461  2.77708      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     10   3.36220  0.13900  3.41461  2.77708     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     11   0.15028  3.31884  2.76184  3.21476     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     12   2.90418  3.52506  0.12426  3.42332     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     13   2.90418  3.52506  0.12426  3.42332     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     14   3.02702  2.55588  3.07751  0.18893     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     15   3.36220  0.13900  3.41461  2.77708     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     16   0.15028  3.31884  2.76184  3.21476     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     17   2.90418  3.52506  0.12426  3.42332     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     18   0.15028  3.31884  2.76184  3.21476     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     19   3.36220  0.13900  3.41461  2.77708     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     20   2.90418  3.52506  0.12426  3.42332     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     21   2.90418  3.52506  0.12426  3.42332     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     22   2.90418  3.52506  0.12426  3.42332     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     23   0.15028  3.31884  2.76184  3.21476     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     24   3.36220  0.13900  3.41461  2.77708     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     25   3.02702  2.55588  3.07751  0.18893     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     26   0.15028  3.31884  2.76184  3.21476     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     27   3.36220  0.13900  3.41461  2.77708     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     28   3.36220  0.13900  3.41461  2.77708     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     29   3.36220  0.13900  3.41461  2.77708     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     30   2.90418  3.52506  0.12426  3.42332     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     31   3.36220  0.13900  3.41461  2.77708     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     32   3.02702  2.55588  3.07751  0.18893     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     33   2.90418  3.52506  0.12426  3.42332     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     34   0.15028  3.31884  2.76184  3.21476     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     35   2.90418  3.52506  0.12426  3.42332     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     36   3.02702  2.55588  3.07751  0.18893     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     37   3.02702  2.55588  3.07751  0.18893     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     38   3.02702  2.55588  3.07751  0.18893     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     39   0.15028  3.31884  2.76184  3.21476     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     40   0.15028  3.31884  2.76184  3.21476     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     41   2.90418  3.52506  0.12426  3.42332     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     42   3.36220  0.13900  3.41461  2.77708     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     43   0.15028  3.31884  2.76184  3.21476     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     44   3.02702  2.55588  3.07751  0.18893     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03820  3.97720  3.97720  1.46634  0.26236  1.09861  0.40547
+     45   0.15028  3.31884  2.76184  3.21476     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01928  3.95828        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_ninek_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:13:05 2012
+NSEQ  9
+EFFN  3.265137
+CKSUM 2766384668
+STATS LOCAL MSV       -8.1227  0.71931
+STATS LOCAL VITERBI   -7.6635  0.71931
+STATS LOCAL FORWARD   -3.7620  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.50333  1.26598  1.24180  1.57607
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  0.00000        *
+      1   3.06987  2.58322  3.11874  0.18173      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+      2   3.06987  2.58322  3.11874  0.18173      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+      3   2.93451  3.56885  0.11925  3.47156      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+      4   3.41166  0.13280  3.46202  2.81336      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+      5   2.93451  3.56885  0.11925  3.47156      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+      6   0.14438  3.36166  2.78983  3.26157      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+      7   3.41166  0.13280  3.46202  2.81336      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+      8   3.41166  0.13280  3.46202  2.81336      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+      9   3.41166  0.13280  3.46202  2.81336      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     10   3.41166  0.13280  3.46202  2.81336     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     11   0.14438  3.36166  2.78983  3.26157     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     12   2.93451  3.56885  0.11925  3.47156     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     13   2.93451  3.56885  0.11925  3.47156     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     14   3.06987  2.58322  3.11874  0.18173     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     15   3.41166  0.13280  3.46202  2.81336     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     16   0.14438  3.36166  2.78983  3.26157     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     17   2.93451  3.56885  0.11925  3.47156     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     18   2.93451  3.56885  0.11925  3.47156     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     19   3.41166  0.13280  3.46202  2.81336     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     20   0.52310  2.61815  1.38438  2.47807     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     21   2.93451  3.56885  0.11925  3.47156     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     22   2.93451  3.56885  0.11925  3.47156     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     23   2.93451  3.56885  0.11925  3.47156     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     24   3.41166  0.13280  3.46202  2.81336     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     25   3.06987  2.58322  3.11874  0.18173     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     26   0.14438  3.36166  2.78983  3.26157     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     27   3.41166  0.13280  3.46202  2.81336     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     28   3.41166  0.13280  3.46202  2.81336     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     29   3.41166  0.13280  3.46202  2.81336     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     30   2.93451  3.56885  0.11925  3.47156     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     31   3.41166  0.13280  3.46202  2.81336     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     32   3.06987  2.58322  3.11874  0.18173     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     33   2.93451  3.56885  0.11925  3.47156     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     34   0.14438  3.36166  2.78983  3.26157     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     35   2.93451  3.56885  0.11925  3.47156     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     36   3.06987  2.58322  3.11874  0.18173     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     37   3.06987  2.58322  3.11874  0.18173     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     38   3.06987  2.58322  3.11874  0.18173     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     39   0.14438  3.36166  2.78983  3.26157     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     40   0.14438  3.36166  2.78983  3.26157     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     41   2.93451  3.56885  0.11925  3.47156     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     42   3.41166  0.13280  3.46202  2.81336     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     43   0.14438  3.36166  2.78983  3.26157     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     44   3.06987  2.58322  3.11874  0.18173     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03728  4.00097  4.00097  1.46634  0.26236  1.09861  0.40547
+     45   0.14438  3.36166  2.78983  3.26157     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01881  3.98251        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_ninel_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:13:10 2012
+NSEQ  6
+EFFN  3.131836
+CKSUM 1499209124
+STATS LOCAL MSV       -8.0603  0.71933
+STATS LOCAL VITERBI   -7.7477  0.71933
+STATS LOCAL FORWARD   -3.6468  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40997  1.15883  1.31859  1.74593
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  0.00000        *
+      1   3.36028  0.13924  3.41276  2.77566      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+      2   3.02537  2.55482  3.07592  0.18922      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+      3   2.90299  3.52335  0.12446  3.42144      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+      4   3.36028  0.13924  3.41276  2.77566      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+      5   2.90299  3.52335  0.12446  3.42144      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+      6   0.15052  3.31717  2.76074  3.21294      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+      7   3.36028  0.13924  3.41276  2.77566      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+      8   3.36028  0.13924  3.41276  2.77566      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+      9   3.36028  0.13924  3.41276  2.77566      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     10   3.36028  0.13924  3.41276  2.77566     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     11   0.15052  3.31717  2.76074  3.21294     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     12   2.90299  3.52335  0.12446  3.42144     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     13   2.90299  3.52335  0.12446  3.42144     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     14   3.02537  2.55482  3.07592  0.18922     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     15   3.36028  0.13924  3.41276  2.77566     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     16   0.15052  3.31717  2.76074  3.21294     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     17   2.90299  3.52335  0.12446  3.42144     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     18   2.90299  3.52335  0.12446  3.42144     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     19   3.36028  0.13924  3.41276  2.77566     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     20   2.90299  3.52335  0.12446  3.42144     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     21   2.90299  3.52335  0.12446  3.42144     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     22   2.90299  3.52335  0.12446  3.42144     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     23   0.15052  3.31717  2.76074  3.21294     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     24   3.36028  0.13924  3.41276  2.77566     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     25   3.36028  0.13924  3.41276  2.77566     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     26   0.15052  3.31717  2.76074  3.21294     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     27   3.36028  0.13924  3.41276  2.77566     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     28   3.36028  0.13924  3.41276  2.77566     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     29   3.36028  0.13924  3.41276  2.77566     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     30   2.90299  3.52335  0.12446  3.42144     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     31   3.36028  0.13924  3.41276  2.77566     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     32   3.02537  2.55482  3.07592  0.18922     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     33   2.90299  3.52335  0.12446  3.42144     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     34   0.15052  3.31717  2.76074  3.21294     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     35   0.15052  3.31717  2.76074  3.21294     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     36   3.02537  2.55482  3.07592  0.18922     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     37   3.02537  2.55482  3.07592  0.18922     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     38   3.02537  2.55482  3.07592  0.18922     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     39   0.15052  3.31717  2.76074  3.21294     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     40   0.15052  3.31717  2.76074  3.21294     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     41   2.90299  3.52335  0.12446  3.42144     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     42   3.36028  0.13924  3.41276  2.77566     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     43   0.15052  3.31717  2.76074  3.21294     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     44   3.02537  2.55482  3.07592  0.18922     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
+     45   0.15052  3.31717  2.76074  3.21294     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01930  3.95735        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_ninem_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:13:15 2012
+NSEQ  5
+EFFN  3.168945
+CKSUM 2727964424
+STATS LOCAL MSV       -8.0675  0.71932
+STATS LOCAL VITERBI   -7.7708  0.71932
+STATS LOCAL FORWARD   -3.8493  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34344  1.21077  1.38248  1.66004
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  0.00000        *
+      1   3.37482  0.13738  3.42671  2.78637      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      2   3.03791  2.56284  3.08799  0.18707      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      3   2.91196  3.53626  0.12295  3.43565      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      4   3.37482  0.13738  3.42671  2.78637      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      5   2.91196  3.53626  0.12295  3.43565      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      6   0.14875  3.32976  2.76899  3.22669      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      7   3.37482  0.13738  3.42671  2.78637      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      8   3.37482  0.13738  3.42671  2.78637      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+      9   3.37482  0.13738  3.42671  2.78637      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     10   3.37482  0.13738  3.42671  2.78637     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     11   0.14875  3.32976  2.76899  3.22669     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     12   2.91196  3.53626  0.12295  3.43565     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     13   2.91196  3.53626  0.12295  3.43565     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     14   3.03791  2.56284  3.08799  0.18707     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     15   3.37482  0.13738  3.42671  2.78637     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     16   0.14875  3.32976  2.76899  3.22669     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     17   0.14875  3.32976  2.76899  3.22669     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     18   2.91196  3.53626  0.12295  3.43565     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     19   3.37482  0.13738  3.42671  2.78637     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     20   2.91196  3.53626  0.12295  3.43565     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     21   2.91196  3.53626  0.12295  3.43565     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     22   2.91196  3.53626  0.12295  3.43565     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     23   0.14875  3.32976  2.76899  3.22669     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     24   3.37482  0.13738  3.42671  2.78637     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     25   3.03791  2.56284  3.08799  0.18707     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     26   0.14875  3.32976  2.76899  3.22669     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     27   3.37482  0.13738  3.42671  2.78637     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     28   3.37482  0.13738  3.42671  2.78637     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     29   3.37482  0.13738  3.42671  2.78637     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     30   2.91196  3.53626  0.12295  3.43565     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     31   3.37482  0.13738  3.42671  2.78637     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     32   3.03791  2.56284  3.08799  0.18707     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     33   2.91196  3.53626  0.12295  3.43565     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     34   0.14875  3.32976  2.76899  3.22669     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     35   0.14875  3.32976  2.76899  3.22669     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     36   3.03791  2.56284  3.08799  0.18707     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     37   3.03791  2.56284  3.08799  0.18707     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     38   3.03791  2.56284  3.08799  0.18707     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     39   0.14875  3.32976  2.76899  3.22669     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     40   0.14875  3.32976  2.76899  3.22669     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     41   2.91196  3.53626  0.12295  3.43565     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     42   3.37482  0.13738  3.42671  2.78637     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     43   0.14875  3.32976  2.76899  3.22669     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     44   3.03791  2.56284  3.08799  0.18707     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
+     45   0.14875  3.32976  2.76899  3.22669     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01916  3.96442        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_ninen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:13:23 2012
+NSEQ  4
+EFFN  3.230469
+CKSUM 2299958284
+STATS LOCAL MSV       -8.1930  0.71932
+STATS LOCAL VITERBI   -7.7386  0.71932
+STATS LOCAL FORWARD   -3.7873  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.46710  1.20843  1.27156  1.65891
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  0.00000        *
+      1   3.39853  0.13441  3.44944  2.80375      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      2   3.05845  2.57594  3.10775  0.18362      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      3   2.92650  3.55724  0.12055  3.45877      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      4   3.39853  0.13441  3.44944  2.80375      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      5   2.92650  3.55724  0.12055  3.45877      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      6   0.14592  3.35028  2.78241  3.24912      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      7   3.39853  0.13441  3.44944  2.80375      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      8   3.39853  0.13441  3.44944  2.80375      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      9   3.39853  0.13441  3.44944  2.80375      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     10   3.39853  0.13441  3.44944  2.80375     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     11   0.14592  3.35028  2.78241  3.24912     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     12   2.92650  3.55724  0.12055  3.45877     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     13   2.92650  3.55724  0.12055  3.45877     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     14   3.05845  2.57594  3.10775  0.18362     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     15   3.39853  0.13441  3.44944  2.80375     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     16   0.14592  3.35028  2.78241  3.24912     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     17   2.92650  3.55724  0.12055  3.45877     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     18   1.65135  2.79903  0.38930  2.66201     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     19   3.39853  0.13441  3.44944  2.80375     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     20   2.92650  3.55724  0.12055  3.45877     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     21   2.92650  3.55724  0.12055  3.45877     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     22   2.92650  3.55724  0.12055  3.45877     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     23   2.92650  3.55724  0.12055  3.45877     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     24   3.39853  0.13441  3.44944  2.80375     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     25   3.05845  2.57594  3.10775  0.18362     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     26   0.14592  3.35028  2.78241  3.24912     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     27   3.39853  0.13441  3.44944  2.80375     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     28   3.39853  0.13441  3.44944  2.80375     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     29   3.39853  0.13441  3.44944  2.80375     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     30   2.92650  3.55724  0.12055  3.45877     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     31   3.39853  0.13441  3.44944  2.80375     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     32   3.05845  2.57594  3.10775  0.18362     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     33   2.92650  3.55724  0.12055  3.45877     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     34   0.14592  3.35028  2.78241  3.24912     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     35   0.14592  3.35028  2.78241  3.24912     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     36   3.05845  2.57594  3.10775  0.18362     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     37   3.05845  2.57594  3.10775  0.18362     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     38   3.05845  2.57594  3.10775  0.18362     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     39   0.14592  3.35028  2.78241  3.24912     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     40   0.14592  3.35028  2.78241  3.24912     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     41   2.92650  3.55724  0.12055  3.45877     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     42   3.39853  0.13441  3.44944  2.80375     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     43   0.14592  3.35028  2.78241  3.24912     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     44   3.05845  2.57594  3.10775  0.18362     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     45   0.14592  3.35028  2.78241  3.24912     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01894  3.97602        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_nineo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:13:30 2012
+NSEQ  11
+EFFN  3.440186
+CKSUM 1151203971
+STATS LOCAL MSV       -7.5786  0.71933
+STATS LOCAL VITERBI   -7.5431  0.71933
+STATS LOCAL FORWARD   -4.0370  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.38732  1.33960  1.22064  1.64370
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  0.00000        *
+      1   0.13712  3.41716  2.82583  3.32234      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+      2   3.47557  0.12526  3.52321  2.85981      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+      3   2.97309  3.62505  0.11316  3.53363      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+      4   0.13712  3.41716  2.82583  3.32234      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+      5   2.97309  3.62505  0.11316  3.53363      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+      6   0.13712  3.41716  2.82583  3.32234      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+      7   3.47557  0.12526  3.52321  2.85981      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+      8   3.47557  0.12526  3.52321  2.85981      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+      9   3.12600  2.61890  3.17272  0.17277      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     10   2.61030  0.48486  2.68062  1.41805     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     11   0.13712  3.41716  2.82583  3.32234     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     12   2.97309  3.62505  0.11316  3.53363     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     13   2.97309  3.62505  0.11316  3.53363     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     14   3.12600  2.61890  3.17272  0.17277     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     15   3.47557  0.12526  3.52321  2.85981     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     16   0.13712  3.41716  2.82583  3.32234     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     17   2.97309  3.62505  0.11316  3.53363     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     18   2.97309  3.62505  0.11316  3.53363     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     19   3.47557  0.12526  3.52321  2.85981     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     20   2.97309  3.62505  0.11316  3.53363     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     21   2.97309  3.62505  0.11316  3.53363     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     22   2.97309  3.62505  0.11316  3.53363     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     23   2.97309  3.62505  0.11316  3.53363     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     24   3.47557  0.12526  3.52321  2.85981     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     25   3.12600  2.61890  3.17272  0.17277     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     26   0.13712  3.41716  2.82583  3.32234     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     27   3.47557  0.12526  3.52321  2.85981     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     28   3.47557  0.12526  3.52321  2.85981     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     29   3.47557  0.12526  3.52321  2.85981     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     30   2.97309  3.62505  0.11316  3.53363     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     31   3.47557  0.12526  3.52321  2.85981     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     32   3.12600  2.61890  3.17272  0.17277     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     33   2.24285  1.62386  0.52442  2.25562     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     34   0.13712  3.41716  2.82583  3.32234     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     35   1.94892  3.03443  0.28120  2.90791     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     36   3.12600  2.61890  3.17272  0.17277     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     37   3.12600  2.61890  3.17272  0.17277     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     38   3.12600  2.61890  3.17272  0.17277     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     39   0.13712  3.41716  2.82583  3.32234     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     40   0.13712  3.41716  2.82583  3.32234     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     41   2.97309  3.62505  0.11316  3.53363     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     42   3.47557  0.12526  3.52321  2.85981     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     43   0.13712  3.41716  2.82583  3.32234     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     44   3.12600  2.61890  3.17272  0.17277     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03610  4.03250  4.03250  1.46634  0.26236  1.09861  0.40547
+     45   0.13712  3.41716  2.82583  3.32234     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01821  4.01461        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_ninep_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:13:35 2012
+NSEQ  610
+EFFN  4.007034
+CKSUM 1262486263
+STATS LOCAL MSV       -7.0516  0.71933
+STATS LOCAL VITERBI   -7.7102  0.71933
+STATS LOCAL FORWARD   -3.8833  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.44177  1.25215  1.23730  1.67432
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  0.00000        *
+      1   1.14572  1.16543  2.09655  1.39700      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+      2   1.81419  0.98237  2.18997  1.04787      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+      3   2.86297  3.69678  0.11517  3.61619      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+      4   2.98447  0.22606  2.95701  2.30470      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+      5   3.07994  3.78278  0.09787  3.70849      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+      6   0.11850  3.57637  2.92823  3.49716      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+      7   3.65723  0.10638  3.69668  2.98961      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+      8   3.65723  0.10638  3.69668  2.98961      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+      9   3.56466  0.12429  3.60782  2.78941      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     10   3.60914  0.11551  3.65048  2.88174     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     11   0.11850  3.57637  2.92823  3.49716     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     12   3.07994  3.78278  0.09787  3.70849     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     13   3.07994  3.78278  0.09787  3.70849     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     14   3.29117  2.72365  3.33142  0.14918     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     15   3.65723  0.10638  3.69668  2.98961     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     16   0.11850  3.57637  2.92823  3.49716     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     17   2.93580  3.72759  0.10886  3.64948     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     18   2.87638  3.50440  0.14021  3.11409     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     19   3.60880  0.11558  3.65015  2.88101     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     20   2.86023  3.69559  0.11542  3.61490     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     21   2.94694  3.73212  0.10794  3.65437     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     22   3.07994  3.78278  0.09787  3.70849     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     23   0.27754  3.04298  1.98392  2.86236     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     24   2.22793  0.70822  2.44636  1.16116     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     25   3.07400  2.19331  3.12394  0.22535     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     26   0.12732  3.54052  2.82860  3.45911     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     27   3.65723  0.10638  3.69668  2.98961     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     28   3.60785  0.11576  3.64924  2.87898     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     29   3.65723  0.10638  3.69668  2.98961     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     30   2.95516  3.73544  0.10727  3.65794     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     31   3.65723  0.10638  3.69668  2.98961     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     32   3.25323  2.61818  3.29510  0.16093     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     33   3.07994  3.78278  0.09787  3.70849     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     34   0.12719  3.54105  2.83002  3.45968     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     35   2.59329  3.49128  0.15335  3.29870     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     36   3.24508  2.59646  3.28731  0.16353     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     37   3.29117  2.72365  3.33142  0.14918     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     38   3.29117  2.72365  3.33142  0.14918     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     39   0.11850  3.57637  2.92823  3.49716     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     40   0.11850  3.57637  2.92823  3.49716     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     41   3.07994  3.78278  0.09787  3.70849     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     42   3.65723  0.10638  3.69668  2.98961     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     43   0.11850  3.57637  2.92823  3.49716     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     44   3.29117  2.72365  3.33142  0.14918     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03275  4.12827  4.12827  1.46634  0.26236  1.09861  0.40547
+     45   0.13605  3.29324  2.88454  3.37586     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01651  4.11203        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_nineteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:20:52 2012
+NSEQ  29
+EFFN  4.053345
+CKSUM 688373050
+STATS LOCAL MSV       -7.0323  0.71932
+STATS LOCAL VITERBI   -7.6275  0.71932
+STATS LOCAL FORWARD   -3.5999  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.53105  1.23724  1.21047  1.63245
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  0.00000        *
+      1   2.03882  1.06013  2.33707  0.85145      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+      2   3.27048  0.19609  3.32492  2.26243      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+      3   3.08764  3.79422  0.09686  3.72119      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+      4   3.67051  0.10513  3.70935  2.99900      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+      5   3.08764  3.79422  0.09686  3.72119      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+      6   0.11725  3.58812  2.93578  3.51009      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+      7   3.67051  0.10513  3.70935  2.99900      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+      8   3.67051  0.10513  3.70935  2.99900      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+      9   2.58614  0.64370  2.65678  1.11117      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     10   3.37684  0.16773  3.42749  2.43276     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     11   0.11725  3.58812  2.93578  3.51009     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     12   3.08764  3.79422  0.09686  3.72119     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     13   3.08764  3.79422  0.09686  3.72119     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     14   3.30362  2.73157  3.34338  0.14755     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     15   3.67051  0.10513  3.70935  2.99900     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     16   0.11725  3.58812  2.93578  3.51009     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     17   3.08764  3.79422  0.09686  3.72119     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     18   3.08764  3.79422  0.09686  3.72119     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     19   3.03310  2.08635  3.08496  0.24595     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     20   3.08764  3.79422  0.09686  3.72119     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     21   2.08863  1.84152  0.79800  1.31923     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     22   3.08764  3.79422  0.09686  3.72119     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     23   3.08764  3.79422  0.09686  3.72119     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     24   2.58614  0.64370  2.65678  1.11117     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     25   3.24588  0.20324  3.30115  2.22429     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     26   0.11725  3.58812  2.93578  3.51009     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     27   3.67051  0.10513  3.70935  2.99900     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     28   3.67051  0.10513  3.70935  2.99900     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     29   3.03310  2.08635  3.08496  0.24595     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     30   3.08764  3.79422  0.09686  3.72119     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     31   3.67051  0.10513  3.70935  2.99900     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     32   3.30362  2.73157  3.34338  0.14755     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     33   3.08764  3.79422  0.09686  3.72119     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     34   0.11725  3.58812  2.93578  3.51009     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     35   3.08764  3.79422  0.09686  3.72119     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     36   3.24588  0.20324  3.30115  2.22429     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     37   3.30362  2.73157  3.34338  0.14755     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     38   3.30362  2.73157  3.34338  0.14755     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     39   0.11725  3.58812  2.93578  3.51009     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     40   0.11725  3.58812  2.93578  3.51009     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     41   3.08764  3.79422  0.09686  3.72119     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     42   3.67051  0.10513  3.70935  2.99900     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     43   0.11725  3.58812  2.93578  3.51009     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     44   3.30362  2.73157  3.34338  0.14755     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03251  4.13570  4.13570  1.46634  0.26236  1.09861  0.40547
+     45   0.11725  3.58812  2.93578  3.51009     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01638  4.11958        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:10:54 2012
+NSEQ  6
+EFFN  3.225586
+CKSUM 92353348
+STATS LOCAL MSV       -8.1186  0.71931
+STATS LOCAL VITERBI   -7.6232  0.71931
+STATS LOCAL FORWARD   -3.7345  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.35281  1.21043  1.37640  1.65584
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  0.00000        *
+      1   3.05683  2.57491  3.10619  0.18389      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      2   3.05683  2.57491  3.10619  0.18389      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      3   2.92536  3.55560  0.12074  3.45696      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      4   3.39667  0.13464  3.44765  2.80239      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      5   0.30359  2.90318  1.93256  2.77723      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      6   0.14614  3.34867  2.78135  3.24736      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      7   3.39667  0.13464  3.44765  2.80239      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      8   3.39667  0.13464  3.44765  2.80239      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      9   3.39667  0.13464  3.44765  2.80239      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     10   3.39667  0.13464  3.44765  2.80239     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     11   0.14614  3.34867  2.78135  3.24736     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     12   0.14614  3.34867  2.78135  3.24736     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     13   2.92536  3.55560  0.12074  3.45696     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     14   3.05683  2.57491  3.10619  0.18389     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     15   3.39667  0.13464  3.44765  2.80239     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     16   0.14614  3.34867  2.78135  3.24736     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     17   2.92536  3.55560  0.12074  3.45696     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     18   2.92536  3.55560  0.12074  3.45696     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     19   3.05683  2.57491  3.10619  0.18389     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     20   2.92536  3.55560  0.12074  3.45696     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     21   2.92536  3.55560  0.12074  3.45696     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     22   2.92536  3.55560  0.12074  3.45696     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     23   0.14614  3.34867  2.78135  3.24736     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     24   3.39667  0.13464  3.44765  2.80239     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     25   3.05683  2.57491  3.10619  0.18389     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     26   0.14614  3.34867  2.78135  3.24736     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     27   3.39667  0.13464  3.44765  2.80239     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     28   3.39667  0.13464  3.44765  2.80239     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     29   3.39667  0.13464  3.44765  2.80239     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     30   2.92536  3.55560  0.12074  3.45696     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     31   3.39667  0.13464  3.44765  2.80239     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     32   3.39667  0.13464  3.44765  2.80239     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     33   2.92536  3.55560  0.12074  3.45696     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     34   0.14614  3.34867  2.78135  3.24736     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     35   2.92536  3.55560  0.12074  3.45696     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     36   3.39667  0.13464  3.44765  2.80239     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     37   3.05683  2.57491  3.10619  0.18389     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     38   3.05683  2.57491  3.10619  0.18389     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     39   0.14614  3.34867  2.78135  3.24736     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     40   0.14614  3.34867  2.78135  3.24736     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     41   2.92536  3.55560  0.12074  3.45696     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     42   3.39667  0.13464  3.44765  2.80239     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     43   0.14614  3.34867  2.78135  3.24736     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     44   3.05683  2.57491  3.10619  0.18389     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     45   0.14614  3.34867  2.78135  3.24736     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01896  3.97511        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_seven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:11:44 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2919369856
+STATS LOCAL MSV       -7.6061  0.72738
+STATS LOCAL VITERBI   -8.1247  0.72738
+STATS LOCAL FORWARD   -3.1589  0.72738
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39994  1.35690  1.20998  1.62087
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.53331  3.02441  0.20344  2.88069     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_seventeen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:20:31 2012
+NSEQ  315
+EFFN  3.917313
+CKSUM 3308305825
+STATS LOCAL MSV       -6.8187  0.71931
+STATS LOCAL VITERBI   -7.7150  0.71931
+STATS LOCAL FORWARD   -3.9240  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.48096  1.28928  1.21174  1.61229
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  0.00000        *
+      1   1.70907  1.22019  1.38354  1.29791      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+      2   2.55787  1.37120  2.56594  0.52445      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+      3   3.06461  3.76005  0.09993  3.68324      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+      4   3.09656  0.15677  3.38125  2.71979      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+      5   3.06461  3.76005  0.09993  3.68324      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+      6   0.12104  3.55308  2.91328  3.47156      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+      7   2.74203  0.43166  2.81020  1.48749      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+      8   3.63085  0.10891  3.67153  2.97093      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+      9   3.52194  0.13035  3.56685  2.74224      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     10   3.63085  0.10891  3.67153  2.97093     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     11   0.12104  3.55308  2.91328  3.47156     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     12   3.06461  3.76005  0.09993  3.68324     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     13   3.06461  3.76005  0.09993  3.68324     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     14   3.26661  2.70806  3.30783  0.15245     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     15   3.63085  0.10891  3.67153  2.97093     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     16   0.12104  3.55308  2.91328  3.47156     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     17   3.06461  3.76005  0.09993  3.68324     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     18   3.06461  3.76005  0.09993  3.68324     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     19   3.63085  0.10891  3.67153  2.97093     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     20   3.06461  3.76005  0.09993  3.68324     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     21   3.06461  3.76005  0.09993  3.68324     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     22   3.06461  3.76005  0.09993  3.68324     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     23   0.53592  2.70900  1.30245  2.57174     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     24   2.44202  0.99805  2.46142  0.77848     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     25   2.98828  2.53537  3.16297  0.18863     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     26   0.12104  3.55308  2.91328  3.47156     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     27   3.63085  0.10891  3.67153  2.97093     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     28   3.63085  0.10891  3.67153  2.97093     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     29   3.63085  0.10891  3.67153  2.97093     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     30   3.06461  3.76005  0.09993  3.68324     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     31   3.63085  0.10891  3.67153  2.97093     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     32   3.26661  2.70806  3.30783  0.15245     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     33   3.06461  3.76005  0.09993  3.68324     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     34   0.12104  3.55308  2.91328  3.47156     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     35   3.06461  3.76005  0.09993  3.68324     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     36   3.26661  2.70806  3.30783  0.15245     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     37   3.26661  2.70806  3.30783  0.15245     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     38   3.26661  2.70806  3.30783  0.15245     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     39   0.12104  3.55308  2.91328  3.47156     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     40   0.12104  3.55308  2.91328  3.47156     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     41   3.06461  3.76005  0.09993  3.68324     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     42   3.63085  0.10891  3.67153  2.97093     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     43   0.12104  3.55308  2.91328  3.47156     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     44   3.26661  2.70806  3.30783  0.15245     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03324  4.11371  4.11371  1.46634  0.26236  1.09861  0.40547
+     45   0.12104  3.55308  2.91328  3.47156     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01676  4.09722        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_six_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:11:36 2012
+NSEQ  16
+EFFN  3.230469
+CKSUM 3506547780
+STATS LOCAL MSV       -8.2747  0.71931
+STATS LOCAL VITERBI   -7.5578  0.71931
+STATS LOCAL FORWARD   -3.9985  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.39108  1.33292  1.20881  1.66636
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  0.00000        *
+      1   0.14592  3.35028  2.78241  3.24912      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      2   3.39853  0.13441  3.44944  2.80375      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      3   2.92650  3.55724  0.12055  3.45877      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      4   0.14592  3.35028  2.78241  3.24912      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      5   2.92650  3.55724  0.12055  3.45877      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      6   0.14592  3.35028  2.78241  3.24912      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      7   3.39853  0.13441  3.44944  2.80375      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      8   3.39853  0.13441  3.44944  2.80375      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+      9   3.05845  2.57594  3.10775  0.18362      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     10   3.39853  0.13441  3.44944  2.80375     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     11   0.14592  3.35028  2.78241  3.24912     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     12   2.92650  3.55724  0.12055  3.45877     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     13   2.92650  3.55724  0.12055  3.45877     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     14   3.05845  2.57594  3.10775  0.18362     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     15   3.39853  0.13441  3.44944  2.80375     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     16   0.14592  3.35028  2.78241  3.24912     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     17   2.92650  3.55724  0.12055  3.45877     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     18   2.92650  3.55724  0.12055  3.45877     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     19   3.39853  0.13441  3.44944  2.80375     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     20   2.92650  3.55724  0.12055  3.45877     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     21   2.92650  3.55724  0.12055  3.45877     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     22   2.92650  3.55724  0.12055  3.45877     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     23   2.92650  3.55724  0.12055  3.45877     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     24   3.39853  0.13441  3.44944  2.80375     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     25   3.05845  2.57594  3.10775  0.18362     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     26   0.14592  3.35028  2.78241  3.24912     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     27   3.39853  0.13441  3.44944  2.80375     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     28   3.39853  0.13441  3.44944  2.80375     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     29   3.39853  0.13441  3.44944  2.80375     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     30   2.92650  3.55724  0.12055  3.45877     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     31   3.39853  0.13441  3.44944  2.80375     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     32   3.05845  2.57594  3.10775  0.18362     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     33   2.92650  3.55724  0.12055  3.45877     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     34   0.14592  3.35028  2.78241  3.24912     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     35   1.65135  2.79903  0.38930  2.66201     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     36   3.05845  2.57594  3.10775  0.18362     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     37   3.05845  2.57594  3.10775  0.18362     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     38   3.05845  2.57594  3.10775  0.18362     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     39   0.14592  3.35028  2.78241  3.24912     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     40   0.14592  3.35028  2.78241  3.24912     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     41   2.92650  3.55724  0.12055  3.45877     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     42   3.39853  0.13441  3.44944  2.80375     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     43   0.14592  3.35028  2.78241  3.24912     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     44   3.05845  2.57594  3.10775  0.18362     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03752  3.99461  3.99461  1.46634  0.26236  1.09861  0.40547
+     45   0.14592  3.35028  2.78241  3.24912     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01894  3.97602        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_sixteena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:16:12 2012
+NSEQ  44
+EFFN  3.585205
+CKSUM 645047424
+STATS LOCAL MSV       -7.5020  0.71933
+STATS LOCAL VITERBI   -7.7177  0.71933
+STATS LOCAL FORWARD   -3.8505  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.44682  1.21642  1.26677  1.67850
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  0.00000        *
+      1   2.01891  0.44736  2.35801  2.01530      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+      2   3.40225  0.14546  3.45187  2.65373      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+      3   3.00287  3.66877  0.10867  3.58200      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+      4   2.75860  0.19212  3.16597  2.67018      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+      5   3.00287  3.66877  0.10867  3.58200      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+      6   0.13171  3.46074  2.85396  3.37014      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+      7   3.52559  0.11970  3.57103  2.89585      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+      8   3.52559  0.11970  3.57103  2.89585      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+      9   2.79989  0.18650  3.19116  2.68533      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     10   3.52559  0.11970  3.57103  2.89585     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     11   0.13171  3.46074  2.85396  3.37014     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     12   3.00287  3.66877  0.10867  3.58200     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     13   3.00287  3.66877  0.10867  3.58200     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     14   3.17060  2.64719  3.21559  0.16601     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     15   3.52559  0.11970  3.57103  2.89585     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     16   0.13171  3.46074  2.85396  3.37014     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     17   3.00287  3.66877  0.10867  3.58200     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     18   1.51507  2.79099  0.43315  2.65382     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     19   3.52559  0.11970  3.57103  2.89585     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     20   3.00287  3.66877  0.10867  3.58200     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     21   3.00287  3.66877  0.10867  3.58200     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     22   3.00287  3.66877  0.10867  3.58200     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     23   0.15890  3.35672  2.60794  3.26017     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     24   2.57661  1.39705  2.64361  0.50164     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     25   3.17060  2.64719  3.21559  0.16601     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     26   0.13171  3.46074  2.85396  3.37014     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     27   3.52559  0.11970  3.57103  2.89585     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     28   3.52559  0.11970  3.57103  2.89585     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     29   3.52559  0.11970  3.57103  2.89585     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     30   3.00287  3.66877  0.10867  3.58200     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     31   3.52559  0.11970  3.57103  2.89585     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     32   3.17060  2.64719  3.21559  0.16601     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     33   3.00287  3.66877  0.10867  3.58200     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     34   0.13171  3.46074  2.85396  3.37014     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     35   2.43762  3.38266  0.17325  3.27685     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     36   3.17060  2.64719  3.21559  0.16601     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     37   3.17060  2.64719  3.21559  0.16601     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     38   3.17060  2.64719  3.21559  0.16601     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     39   0.13171  3.46074  2.85396  3.37014     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     40   0.13171  3.46074  2.85396  3.37014     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     41   3.00287  3.66877  0.10867  3.58200     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     42   3.52559  0.11970  3.57103  2.89585     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     43   0.13171  3.46074  2.85396  3.37014     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     44   3.17060  2.64719  3.21559  0.16601     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03518  4.05789  4.05789  1.46634  0.26236  1.09861  0.40547
+     45   0.13171  3.46074  2.85396  3.37014     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01775  4.04045        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_sixteenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:16:20 2012
+NSEQ  18
+EFFN  3.238770
+CKSUM 1315903361
+STATS LOCAL MSV       -8.3026  0.71933
+STATS LOCAL VITERBI   -7.5704  0.71933
+STATS LOCAL FORWARD   -4.0875  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47286  1.23053  1.25337  1.64479
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  0.00000        *
+      1   0.14555  3.35302  2.78419  3.25212      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+      2   2.56199  0.50253  2.63307  1.40246      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+      3   2.92843  3.56004  0.12024  3.46185      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+      4   3.40169  0.13402  3.45247  2.80607      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+      5   2.92843  3.56004  0.12024  3.46185      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+      6   0.14555  3.35302  2.78419  3.25212      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+      7   3.40169  0.13402  3.45247  2.80607      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+      8   3.40169  0.13402  3.45247  2.80607      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+      9   3.06119  2.57769  3.11039  0.18316      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     10   3.40169  0.13402  3.45247  2.80607     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     11   0.14555  3.35302  2.78419  3.25212     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     12   2.92843  3.56004  0.12024  3.46185     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     13   3.40169  0.13402  3.45247  2.80607     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     14   3.06119  2.57769  3.11039  0.18316     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     15   3.40169  0.13402  3.45247  2.80607     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     16   0.14555  3.35302  2.78419  3.25212     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     17   2.92843  3.56004  0.12024  3.46185     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     18   2.92843  3.56004  0.12024  3.46185     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     19   3.40169  0.13402  3.45247  2.80607     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     20   2.92843  3.56004  0.12024  3.46185     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     21   2.92843  3.56004  0.12024  3.46185     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     22   2.92843  3.56004  0.12024  3.46185     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     23   2.92843  3.56004  0.12024  3.46185     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     24   3.40169  0.13402  3.45247  2.80607     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     25   3.06119  2.57769  3.11039  0.18316     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     26   0.14555  3.35302  2.78419  3.25212     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     27   3.40169  0.13402  3.45247  2.80607     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     28   3.40169  0.13402  3.45247  2.80607     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     29   3.40169  0.13402  3.45247  2.80607     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     30   2.92843  3.56004  0.12024  3.46185     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     31   3.40169  0.13402  3.45247  2.80607     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     32   3.06119  2.57769  3.11039  0.18316     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     33   2.92843  3.56004  0.12024  3.46185     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     34   0.14555  3.35302  2.78419  3.25212     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     35   2.92843  3.56004  0.12024  3.46185     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     36   3.06119  2.57769  3.11039  0.18316     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     37   3.06119  2.57769  3.11039  0.18316     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     38   3.06119  2.57769  3.11039  0.18316     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     39   0.14555  3.35302  2.78419  3.25212     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     40   0.14555  3.35302  2.78419  3.25212     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     41   2.92843  3.56004  0.12024  3.46185     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     42   3.40169  0.13402  3.45247  2.80607     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     43   0.14555  3.35302  2.78419  3.25212     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     44   3.06119  2.57769  3.11039  0.18316     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03747  3.99614  3.99614  1.46634  0.26236  1.09861  0.40547
+     45   0.14555  3.35302  2.78419  3.25212     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01891  3.97758        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_sixteenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:16:25 2012
+NSEQ  77
+EFFN  3.689270
+CKSUM 597093898
+STATS LOCAL MSV       -7.5676  0.71931
+STATS LOCAL VITERBI   -7.7877  0.71931
+STATS LOCAL FORWARD   -3.9275  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.51890  1.43798  1.04634  1.64808
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  0.00000        *
+      1   2.40425  3.08130  0.22999  2.67035      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+      2   3.01817  2.22960  3.06947  0.22679      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+      3   2.61265  3.50636  0.14664  3.40965      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+      4   2.00072  0.72874  2.10141  1.34721      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+      5   2.31739  3.33257  0.19122  3.22347      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+      6   0.12813  3.49076  2.87327  3.40309      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+      7   3.45939  0.13642  3.50685  2.71682      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+      8   3.55992  0.11605  3.60383  2.92044      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+      9   3.30137  0.17320  3.35448  2.43877      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     10   3.38645  0.15256  3.43656  2.58377     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     11   0.12813  3.49076  2.87327  3.40309     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     12   3.02313  3.69864  0.10572  3.61510     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     13   3.02313  3.69864  0.10572  3.61510     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     14   0.15781  3.32082  2.80161  3.01275     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     15   3.20158  2.66683  3.24536  0.16149     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     16   3.02313  3.69864  0.10572  3.61510     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     17   3.02313  3.69864  0.10572  3.61510     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     18   2.94893  3.54129  0.12822  3.24501     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     19   3.33426  0.16497  3.38622  2.49375     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     20   3.02313  3.69864  0.10572  3.61510     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     21   3.02313  3.69864  0.10572  3.61510     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     22   3.02313  3.69864  0.10572  3.61510     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     23   1.90722  3.06142  0.28552  2.93628     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     24   3.20158  2.66683  3.24536  0.16149     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     25   2.74217  3.57362  0.13151  3.48193     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     26   0.12813  3.49076  2.87327  3.40309     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     27   3.55992  0.11605  3.60383  2.92044     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     28   3.55992  0.11605  3.60383  2.92044     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     29   3.46856  0.13448  3.51567  2.73426     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     30   3.02313  3.69864  0.10572  3.61510     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     31   3.55992  0.11605  3.60383  2.92044     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     32   2.94225  2.07204  2.99664  0.25959     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     33   3.02313  3.69864  0.10572  3.61510     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     34   0.12813  3.49076  2.87327  3.40309     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     35   2.82886  3.61528  0.12261  3.52664     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     36   3.20158  2.66683  3.24536  0.16149     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     37   3.20158  2.66683  3.24536  0.16149     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     38   3.20158  2.66683  3.24536  0.16149     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     39   0.12813  3.49076  2.87327  3.40309     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     40   0.12813  3.49076  2.87327  3.40309     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     41   3.02313  3.69864  0.10572  3.61510     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     42   3.55992  0.11605  3.60383  2.92044     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     43   0.12813  3.49076  2.87327  3.40309     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     44   3.20158  2.66683  3.24536  0.16149     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03455  4.07572  4.07572  1.46634  0.26236  1.09861  0.40547
+     45   0.12813  3.49076  2.87327  3.40309     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01742  4.05859        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_sixteend_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:16:31 2012
+NSEQ  4
+EFFN  3.183594
+CKSUM 2286681022
+STATS LOCAL MSV       -8.2107  0.71933
+STATS LOCAL VITERBI   -7.8128  0.71933
+STATS LOCAL FORWARD   -3.7084  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40199  1.23646  1.19419  1.82924
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  0.00000        *
+      1   0.14807  3.33468  2.77222  3.23207      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      2   3.04283  2.56598  3.09273  0.18624      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      3   2.91546  3.54130  0.12237  3.44120      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      4   3.38051  0.13666  3.43217  2.79055      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      5   2.91546  3.54130  0.12237  3.44120      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      6   0.14807  3.33468  2.77222  3.23207      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      7   3.38051  0.13666  3.43217  2.79055      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      8   3.38051  0.13666  3.43217  2.79055      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+      9   3.38051  0.13666  3.43217  2.79055      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     10   3.38051  0.13666  3.43217  2.79055     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     11   0.14807  3.33468  2.77222  3.23207     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     12   2.91546  3.54130  0.12237  3.44120     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     13   2.91546  3.54130  0.12237  3.44120     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     14   0.14807  3.33468  2.77222  3.23207     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     15   3.04283  2.56598  3.09273  0.18624     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     16   2.91546  3.54130  0.12237  3.44120     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     17   2.91546  3.54130  0.12237  3.44120     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     18   2.91546  3.54130  0.12237  3.44120     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     19   3.38051  0.13666  3.43217  2.79055     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     20   2.91546  3.54130  0.12237  3.44120     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     21   0.14807  3.33468  2.77222  3.23207     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     22   2.91546  3.54130  0.12237  3.44120     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     23   2.91546  3.54130  0.12237  3.44120     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     24   3.38051  0.13666  3.43217  2.79055     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     25   3.38051  0.13666  3.43217  2.79055     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     26   0.14807  3.33468  2.77222  3.23207     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     27   3.38051  0.13666  3.43217  2.79055     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     28   3.38051  0.13666  3.43217  2.79055     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     29   3.38051  0.13666  3.43217  2.79055     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     30   2.91546  3.54130  0.12237  3.44120     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     31   3.38051  0.13666  3.43217  2.79055     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     32   2.60042  0.45814  2.67092  1.49561     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     33   2.91546  3.54130  0.12237  3.44120     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     34   0.14807  3.33468  2.77222  3.23207     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     35   2.91546  3.54130  0.12237  3.44120     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     36   3.04283  2.56598  3.09273  0.18624     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     37   3.04283  2.56598  3.09273  0.18624     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     38   3.04283  2.56598  3.09273  0.18624     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     39   0.14807  3.33468  2.77222  3.23207     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     40   0.14807  3.33468  2.77222  3.23207     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     41   2.91546  3.54130  0.12237  3.44120     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     42   3.38051  0.13666  3.43217  2.79055     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     43   0.14807  3.33468  2.77222  3.23207     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     44   3.04283  2.56598  3.09273  0.18624     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
+     45   0.14807  3.33468  2.77222  3.23207     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01911  3.96719        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_tena_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:13:56 2012
+NSEQ  26
+EFFN  3.164307
+CKSUM 3165523299
+STATS LOCAL MSV       -8.2319  0.71931
+STATS LOCAL VITERBI   -7.4689  0.71931
+STATS LOCAL FORWARD   -4.1879  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34091  1.26975  1.31625  1.66413
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  0.00000        *
+      1   3.37302  0.13761  3.42498  2.78504      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+      2   3.37302  0.13761  3.42498  2.78504      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+      3   0.14897  3.32819  2.76797  3.22498      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+      4   3.03635  2.56184  3.08649  0.18734      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+      5   2.91085  3.53465  0.12314  3.43388      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+      6   0.14897  3.32819  2.76797  3.22498      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+      7   3.37302  0.13761  3.42498  2.78504      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+      8   3.37302  0.13761  3.42498  2.78504      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+      9   3.03635  2.56184  3.08649  0.18734      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     10   3.37302  0.13761  3.42498  2.78504     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     11   0.14897  3.32819  2.76797  3.22498     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     12   2.91085  3.53465  0.12314  3.43388     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     13   0.14897  3.32819  2.76797  3.22498     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     14   3.03635  2.56184  3.08649  0.18734     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     15   3.37302  0.13761  3.42498  2.78504     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     16   0.14897  3.32819  2.76797  3.22498     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     17   2.91085  3.53465  0.12314  3.43388     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     18   0.14897  3.32819  2.76797  3.22498     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     19   3.37302  0.13761  3.42498  2.78504     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     20   2.91085  3.53465  0.12314  3.43388     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     21   2.91085  3.53465  0.12314  3.43388     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     22   2.91085  3.53465  0.12314  3.43388     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     23   2.91085  3.53465  0.12314  3.43388     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     24   3.37302  0.13761  3.42498  2.78504     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     25   2.91085  3.53465  0.12314  3.43388     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     26   0.14897  3.32819  2.76797  3.22498     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     27   3.37302  0.13761  3.42498  2.78504     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     28   3.37302  0.13761  3.42498  2.78504     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     29   3.37302  0.13761  3.42498  2.78504     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     30   2.91085  3.53465  0.12314  3.43388     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     31   3.37302  0.13761  3.42498  2.78504     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     32   3.03635  2.56184  3.08649  0.18734     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     33   2.91085  3.53465  0.12314  3.43388     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     34   0.14897  3.32819  2.76797  3.22498     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     35   2.91085  3.53465  0.12314  3.43388     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     36   3.03635  2.56184  3.08649  0.18734     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     37   3.03635  2.56184  3.08649  0.18734     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     38   3.03635  2.56184  3.08649  0.18734     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     39   0.14897  3.32819  2.76797  3.22498     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     40   0.14897  3.32819  2.76797  3.22498     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     41   2.91085  3.53465  0.12314  3.43388     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     42   3.37302  0.13761  3.42498  2.78504     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     43   0.14897  3.32819  2.76797  3.22498     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     44   3.03635  2.56184  3.08649  0.18734     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03800  3.98235  3.98235  1.46634  0.26236  1.09861  0.40547
+     45   0.14897  3.32819  2.76797  3.22498     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01918  3.96353        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_tenb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:14:01 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 2046295705
+STATS LOCAL MSV       -7.9249  0.71995
+STATS LOCAL VITERBI   -7.7263  0.71995
+STATS LOCAL FORWARD   -3.7672  0.71995
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.33690  1.33800  1.25294  1.66437
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   0.15719  3.27118  2.73043  3.16274      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   0.15719  3.27118  2.73043  3.16274     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.86982  3.47591  0.13017  3.36931     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_tenc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:14:06 2012
+NSEQ  40
+EFFN  3.530273
+CKSUM 467818289
+STATS LOCAL MSV       -7.5640  0.71931
+STATS LOCAL VITERBI   -7.7188  0.71931
+STATS LOCAL FORWARD   -4.4311  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.32237  1.45329  1.27317  1.51525
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  0.00000        *
+      1   2.61303  2.95298  0.25551  2.30275      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+      2   2.44058  2.33281  0.33394  2.30489      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+      3   2.65822  2.42613  2.22125  0.31051      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+      4   2.91618  2.09568  2.97112  0.25925      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+      5   2.99181  3.65250  0.11032  3.56399      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+      6   0.13370  3.44448  2.84348  3.35230      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+      7   3.50695  0.12174  3.55321  2.88245      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+      8   3.50695  0.12174  3.55321  2.88245      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+      9   3.15391  2.63661  3.19955  0.16850      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     10   3.50695  0.12174  3.55321  2.88245     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     11   2.99181  3.65250  0.11032  3.56399     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     12   2.99181  3.65250  0.11032  3.56399     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     13   0.13370  3.44448  2.84348  3.35230     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     14   3.15391  2.63661  3.19955  0.16850     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     15   3.50695  0.12174  3.55321  2.88245     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     16   0.13370  3.44448  2.84348  3.35230     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     17   2.99181  3.65250  0.11032  3.56399     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     18   2.36092  3.32322  0.18704  3.21335     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     19   3.15391  2.63661  3.19955  0.16850     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     20   0.13370  3.44448  2.84348  3.35230     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     21   2.99181  3.65250  0.11032  3.56399     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     22   2.99181  3.65250  0.11032  3.56399     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     23   2.34723  3.31471  0.18943  3.20429     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     24   0.13370  3.44448  2.84348  3.35230     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     25   3.15391  2.63661  3.19955  0.16850     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     26   0.13370  3.44448  2.84348  3.35230     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     27   3.50695  0.12174  3.55321  2.88245     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     28   3.50695  0.12174  3.55321  2.88245     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     29   3.50695  0.12174  3.55321  2.88245     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     30   2.99181  3.65250  0.11032  3.56399     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     31   3.50695  0.12174  3.55321  2.88245     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     32   3.15391  2.63661  3.19955  0.16850     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     33   2.99181  3.65250  0.11032  3.56399     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     34   0.13370  3.44448  2.84348  3.35230     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     35   0.13370  3.44448  2.84348  3.35230     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     36   3.50695  0.12174  3.55321  2.88245     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     37   3.15391  2.63661  3.19955  0.16850     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     38   3.15391  2.63661  3.19955  0.16850     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     39   0.13370  3.44448  2.84348  3.35230     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     40   0.13370  3.44448  2.84348  3.35230     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     41   2.99181  3.65250  0.11032  3.56399     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     42   3.50695  0.12174  3.55321  2.88245     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     43   0.13370  3.44448  2.84348  3.35230     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     44   3.15391  2.63661  3.19955  0.16850     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03553  4.04835  4.04835  1.46634  0.26236  1.09861  0.40547
+     45   0.13370  3.44448  2.84348  3.35230     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01792  4.03074        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_tend_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:14:17 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1093890755
+STATS LOCAL MSV       -7.6566  0.72767
+STATS LOCAL VITERBI   -8.0882  0.72767
+STATS LOCAL FORWARD   -3.7441  0.72767
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28646  1.40926  1.31540  1.55560
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   0.23862  2.84929  2.43386  2.70756      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.57915  2.25909  2.64442  0.28946      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   0.23862  2.84929  2.43386  2.70756     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.57915  2.25909  2.64442  0.28946     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   0.23862  2.84929  2.43386  2.70756     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_thirteen_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:15:42 2012
+NSEQ  4
+EFFN  3.261719
+CKSUM 176532526
+STATS LOCAL MSV       -7.9592  0.71933
+STATS LOCAL VITERBI   -7.7561  0.71933
+STATS LOCAL FORWARD   -3.8855  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27518  1.32049  1.37718  1.60284
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  0.00000        *
+      1   2.58317  1.56516  2.64901  0.43899      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      2   0.14453  3.36055  2.78910  3.26035      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      3   2.93372  3.56771  0.11938  3.47031      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      4   3.41037  0.13295  3.46079  2.81242      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      5   2.93372  3.56771  0.11938  3.47031      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      6   0.14453  3.36055  2.78910  3.26035      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      7   3.41037  0.13295  3.46079  2.81242      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      8   3.41037  0.13295  3.46079  2.81242      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+      9   3.41037  0.13295  3.46079  2.81242      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     10   3.41037  0.13295  3.46079  2.81242     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     11   0.14453  3.36055  2.78910  3.26035     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     12   0.14453  3.36055  2.78910  3.26035     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     13   2.93372  3.56771  0.11938  3.47031     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     14   3.06875  2.58250  3.11766  0.18191     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     15   3.41037  0.13295  3.46079  2.81242     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     16   0.14453  3.36055  2.78910  3.26035     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     17   2.93372  3.56771  0.11938  3.47031     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     18   2.93372  3.56771  0.11938  3.47031     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     19   3.06875  2.58250  3.11766  0.18191     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     20   2.93372  3.56771  0.11938  3.47031     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     21   2.93372  3.56771  0.11938  3.47031     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     22   2.93372  3.56771  0.11938  3.47031     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     23   0.14453  3.36055  2.78910  3.26035     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     24   3.06875  2.58250  3.11766  0.18191     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     25   3.06875  2.58250  3.11766  0.18191     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     26   0.14453  3.36055  2.78910  3.26035     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     27   3.41037  0.13295  3.46079  2.81242     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     28   3.41037  0.13295  3.46079  2.81242     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     29   3.41037  0.13295  3.46079  2.81242     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     30   2.93372  3.56771  0.11938  3.47031     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     31   3.41037  0.13295  3.46079  2.81242     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     32   3.06875  2.58250  3.11766  0.18191     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     33   2.93372  3.56771  0.11938  3.47031     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     34   0.14453  3.36055  2.78910  3.26035     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     35   0.14453  3.36055  2.78910  3.26035     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     36   3.41037  0.13295  3.46079  2.81242     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     37   3.06875  2.58250  3.11766  0.18191     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     38   3.06875  2.58250  3.11766  0.18191     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     39   0.14453  3.36055  2.78910  3.26035     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     40   0.14453  3.36055  2.78910  3.26035     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     41   2.93372  3.56771  0.11938  3.47031     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     42   3.41037  0.13295  3.46079  2.81242     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     43   0.14453  3.36055  2.78910  3.26035     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     44   3.06875  2.58250  3.11766  0.18191     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03731  4.00035  4.00035  1.46634  0.26236  1.09861  0.40547
+     45   0.14453  3.36055  2.78910  3.26035     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01883  3.98187        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_thirtyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:23:58 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 2544106313
+STATS LOCAL MSV       -7.5247  0.72735
+STATS LOCAL VITERBI   -8.3438  0.72735
+STATS LOCAL FORWARD   -3.2438  0.72735
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34271  1.30420  1.26361  1.68825
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   0.23862  2.84929  2.43386  2.70756     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.53331  3.02441  0.20344  2.88069     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_thirtyfoura_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:23:28 2012
+NSEQ  7
+EFFN  3.250488
+CKSUM 2395428810
+STATS LOCAL MSV       -8.1586  0.71933
+STATS LOCAL VITERBI   -7.6661  0.71933
+STATS LOCAL FORWARD   -4.0423  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.54794  1.23507  1.18567  1.65570
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  0.00000        *
+      1   3.06506  2.58015  3.11411  0.18252      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      2   2.21303  0.60736  1.52252  2.05820      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      3   2.93114  3.56396  0.11980  3.46618      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      4   3.40613  0.13347  3.45673  2.80932      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      5   2.93114  3.56396  0.11980  3.46618      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      6   0.14502  3.35687  2.78670  3.25633      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      7   3.40613  0.13347  3.45673  2.80932      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      8   3.40613  0.13347  3.45673  2.80932      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+      9   3.06506  2.58015  3.11411  0.18252      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     10   3.40613  0.13347  3.45673  2.80932     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     11   0.14502  3.35687  2.78670  3.25633     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     12   2.93114  3.56396  0.11980  3.46618     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     13   2.93114  3.56396  0.11980  3.46618     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     14   3.06506  2.58015  3.11411  0.18252     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     15   3.40613  0.13347  3.45673  2.80932     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     16   0.14502  3.35687  2.78670  3.25633     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     17   2.93114  3.56396  0.11980  3.46618     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     18   2.93114  3.56396  0.11980  3.46618     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     19   3.40613  0.13347  3.45673  2.80932     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     20   2.93114  3.56396  0.11980  3.46618     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     21   2.93114  3.56396  0.11980  3.46618     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     22   2.93114  3.56396  0.11980  3.46618     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     23   2.93114  3.56396  0.11980  3.46618     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     24   3.40613  0.13347  3.45673  2.80932     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     25   3.40613  0.13347  3.45673  2.80932     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     26   0.14502  3.35687  2.78670  3.25633     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     27   3.40613  0.13347  3.45673  2.80932     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     28   3.40613  0.13347  3.45673  2.80932     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     29   3.40613  0.13347  3.45673  2.80932     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     30   2.93114  3.56396  0.11980  3.46618     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     31   3.40613  0.13347  3.45673  2.80932     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     32   3.06506  2.58015  3.11411  0.18252     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     33   2.93114  3.56396  0.11980  3.46618     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     34   0.14502  3.35687  2.78670  3.25633     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     35   2.93114  3.56396  0.11980  3.46618     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     36   3.06506  2.58015  3.11411  0.18252     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     37   3.06506  2.58015  3.11411  0.18252     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     38   3.06506  2.58015  3.11411  0.18252     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     39   0.14502  3.35687  2.78670  3.25633     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     40   0.14502  3.35687  2.78670  3.25633     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     41   2.93114  3.56396  0.11980  3.46618     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     42   3.40613  0.13347  3.45673  2.80932     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     43   0.14502  3.35687  2.78670  3.25633     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     44   3.06506  2.58015  3.11411  0.18252     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03738  3.99829  3.99829  1.46634  0.26236  1.09861  0.40547
+     45   0.14502  3.35687  2.78670  3.25633     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01887  3.97977        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_thirtyfourb_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:23:36 2012
+NSEQ  10
+EFFN  3.217773
+CKSUM 2888107526
+STATS LOCAL MSV       -8.1436  0.71933
+STATS LOCAL VITERBI   -7.6932  0.71933
+STATS LOCAL FORWARD   -3.8472  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47619  1.20006  1.25414  1.68743
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  0.00000        *
+      1   2.51261  1.43333  2.58054  0.50303      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      2   3.39368  0.13501  3.44479  2.80020      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      3   2.92353  3.55295  0.12104  3.45404      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      4   3.39368  0.13501  3.44479  2.80020      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      5   2.92353  3.55295  0.12104  3.45404      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      6   0.14649  3.34608  2.77966  3.24453      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      7   3.39368  0.13501  3.44479  2.80020      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      8   3.39368  0.13501  3.44479  2.80020      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+      9   3.39368  0.13501  3.44479  2.80020      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     10   3.39368  0.13501  3.44479  2.80020     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     11   0.14649  3.34608  2.77966  3.24453     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     12   2.92353  3.55295  0.12104  3.45404     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     13   2.92353  3.55295  0.12104  3.45404     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     14   3.05424  2.57325  3.10370  0.18432     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     15   3.39368  0.13501  3.44479  2.80020     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     16   0.14649  3.34608  2.77966  3.24453     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     17   2.92353  3.55295  0.12104  3.45404     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     18   2.92353  3.55295  0.12104  3.45404     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     19   3.39368  0.13501  3.44479  2.80020     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     20   2.92353  3.55295  0.12104  3.45404     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     21   2.92353  3.55295  0.12104  3.45404     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     22   2.92353  3.55295  0.12104  3.45404     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     23   0.14649  3.34608  2.77966  3.24453     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     24   3.39368  0.13501  3.44479  2.80020     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     25   3.05424  2.57325  3.10370  0.18432     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     26   0.14649  3.34608  2.77966  3.24453     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     27   3.39368  0.13501  3.44479  2.80020     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     28   3.39368  0.13501  3.44479  2.80020     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     29   3.39368  0.13501  3.44479  2.80020     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     30   2.92353  3.55295  0.12104  3.45404     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     31   3.39368  0.13501  3.44479  2.80020     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     32   3.05424  2.57325  3.10370  0.18432     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     33   2.92353  3.55295  0.12104  3.45404     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     34   0.14649  3.34608  2.77966  3.24453     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     35   2.92353  3.55295  0.12104  3.45404     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     36   3.05424  2.57325  3.10370  0.18432     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     37   3.05424  2.57325  3.10370  0.18432     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     38   3.05424  2.57325  3.10370  0.18432     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     39   0.14649  3.34608  2.77966  3.24453     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     40   0.14649  3.34608  2.77966  3.24453     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     41   2.92353  3.55295  0.12104  3.45404     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     42   3.39368  0.13501  3.44479  2.80020     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     43   0.14649  3.34608  2.77966  3.24453     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     44   3.05424  2.57325  3.10370  0.18432     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03761  3.99227  3.99227  1.46634  0.26236  1.09861  0.40547
+     45   0.14649  3.34608  2.77966  3.24453     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01898  3.97364        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_thirtyfourc_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:23:43 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1235313167
+STATS LOCAL MSV       -8.2340  0.71993
+STATS LOCAL VITERBI   -7.8814  0.71993
+STATS LOCAL FORWARD   -3.8652  0.71993
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40427  1.27422  1.25518  1.66189
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   3.30705  0.14631  3.36166  2.73626     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   0.15719  3.27118  2.73043  3.16274     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   2.86982  3.47591  0.13017  3.36931     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   3.30705  0.14631  3.36166  2.73626     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.97980  2.52563  3.03204  0.19727     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.86982  3.47591  0.13017  3.36931     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   3.30705  0.14631  3.36166  2.73626     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   2.97980  2.52563  3.03204  0.19727     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   0.15719  3.27118  2.73043  3.16274     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.97980  2.52563  3.03204  0.19727     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.97980  2.52563  3.03204  0.19727     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   0.15719  3.27118  2.73043  3.16274     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   2.86982  3.47591  0.13017  3.36931     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   3.30705  0.14631  3.36166  2.73626     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   0.15719  3.27118  2.73043  3.16274     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:11:10 2012
+NSEQ  4
+EFFN  3.214844
+CKSUM 1201835928
+STATS LOCAL MSV       -8.1712  0.71933
+STATS LOCAL VITERBI   -7.7626  0.71933
+STATS LOCAL FORWARD   -3.7793  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47744  1.32559  1.31730  1.43432
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  0.00000        *
+      1   3.05326  2.57263  3.10276  0.18448      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      2   3.05326  2.57263  3.10276  0.18448      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      3   2.92285  3.55196  0.12115  3.45295      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      4   3.39256  0.13515  3.44371  2.79938      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      5   3.05326  2.57263  3.10276  0.18448      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      6   0.14663  3.34511  2.77903  3.24347      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      7   3.39256  0.13515  3.44371  2.79938      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      8   3.39256  0.13515  3.44371  2.79938      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+      9   3.39256  0.13515  3.44371  2.79938      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     10   3.39256  0.13515  3.44371  2.79938     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     11   0.14663  3.34511  2.77903  3.24347     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     12   2.92285  3.55196  0.12115  3.45295     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     13   2.92285  3.55196  0.12115  3.45295     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     14   3.05326  2.57263  3.10276  0.18448     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     15   3.39256  0.13515  3.44371  2.79938     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     16   0.14663  3.34511  2.77903  3.24347     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     17   2.92285  3.55196  0.12115  3.45295     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     18   2.92285  3.55196  0.12115  3.45295     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     19   3.05326  2.57263  3.10276  0.18448     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     20   2.92285  3.55196  0.12115  3.45295     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     21   2.92285  3.55196  0.12115  3.45295     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     22   2.92285  3.55196  0.12115  3.45295     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     23   0.14663  3.34511  2.77903  3.24347     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     24   3.39256  0.13515  3.44371  2.79938     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     25   3.05326  2.57263  3.10276  0.18448     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     26   0.14663  3.34511  2.77903  3.24347     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     27   3.39256  0.13515  3.44371  2.79938     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     28   3.39256  0.13515  3.44371  2.79938     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     29   3.39256  0.13515  3.44371  2.79938     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     30   2.92285  3.55196  0.12115  3.45295     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     31   3.39256  0.13515  3.44371  2.79938     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     32   3.05326  2.57263  3.10276  0.18448     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     33   2.92285  3.55196  0.12115  3.45295     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     34   0.14663  3.34511  2.77903  3.24347     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     35   2.92285  3.55196  0.12115  3.45295     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     36   3.05326  2.57263  3.10276  0.18448     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     37   3.05326  2.57263  3.10276  0.18448     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     38   3.05326  2.57263  3.10276  0.18448     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     39   0.14663  3.34511  2.77903  3.24347     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     40   0.14663  3.34511  2.77903  3.24347     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     41   2.92285  3.55196  0.12115  3.45295     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     42   3.39256  0.13515  3.44371  2.79938     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     43   0.14663  3.34511  2.77903  3.24347     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     44   3.05326  2.57263  3.10276  0.18448     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
+     45   0.14663  3.34511  2.77903  3.24347     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01899  3.97309        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_twelve_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:15:29 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 1666626583
+STATS LOCAL MSV       -7.6335  0.72740
+STATS LOCAL VITERBI   -8.2106  0.72740
+STATS LOCAL FORWARD   -3.2591  0.72740
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.52257  1.35418  1.16326  1.55483
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.57915  2.25909  2.64442  0.28946      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_twenty_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:21:12 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 458537765
+STATS LOCAL MSV       -8.1436  0.72004
+STATS LOCAL VITERBI   -7.6198  0.72004
+STATS LOCAL FORWARD   -4.1137  0.72004
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40407  1.27131  1.31647  1.58055
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   3.30705  0.14631  3.36166  2.73626      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.86982  3.47591  0.13017  3.36931      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   0.15719  3.27118  2.73043  3.16274      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   0.15719  3.27118  2.73043  3.16274      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   3.30705  0.14631  3.36166  2.73626      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   3.30705  0.14631  3.36166  2.73626      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   2.97980  2.52563  3.03204  0.19727      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   3.30705  0.14631  3.36166  2.73626     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.97980  2.52563  3.03204  0.19727     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   3.30705  0.14631  3.36166  2.73626     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   0.15719  3.27118  2.73043  3.16274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.86982  3.47591  0.13017  3.36931     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.86982  3.47591  0.13017  3.36931     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.86982  3.47591  0.13017  3.36931     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   2.86982  3.47591  0.13017  3.36931     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   3.30705  0.14631  3.36166  2.73626     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.97980  2.52563  3.03204  0.19727     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   0.15719  3.27118  2.73043  3.16274     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   3.30705  0.14631  3.36166  2.73626     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   3.30705  0.14631  3.36166  2.73626     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   3.30705  0.14631  3.36166  2.73626     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   2.86982  3.47591  0.13017  3.36931     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   0.15719  3.27118  2.73043  3.16274     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   2.86982  3.47591  0.13017  3.36931     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.97980  2.52563  3.03204  0.19727     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   2.97980  2.52563  3.03204  0.19727     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   0.15719  3.27118  2.73043  3.16274     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   0.15719  3.27118  2.73043  3.16274     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   2.86982  3.47591  0.13017  3.36931     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   3.30705  0.14631  3.36166  2.73626     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   0.15719  3.27118  2.73043  3.16274     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   2.97980  2.52563  3.03204  0.19727     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   0.15719  3.27118  2.73043  3.16274     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   3.30705  0.14631  3.36166  2.73626     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_twentyeight_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:23:03 2012
+NSEQ  4
+EFFN  3.097656
+CKSUM 2353773636
+STATS LOCAL MSV       -8.2199  0.71933
+STATS LOCAL VITERBI   -7.8312  0.71933
+STATS LOCAL FORWARD   -3.6832  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40516  1.22130  1.19741  1.84611
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  0.00000        *
+      1   0.15219  3.30544  2.75304  3.20013      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+      2   3.01370  2.54736  3.06469  0.19124      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+      3   2.89459  3.51128  0.12588  3.40817      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+      4   3.34671  0.14101  3.39974  2.76565      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+      5   2.89459  3.51128  0.12588  3.40817      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+      6   0.15219  3.30544  2.75304  3.20013      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+      7   3.34671  0.14101  3.39974  2.76565      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+      8   3.34671  0.14101  3.39974  2.76565      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+      9   3.34671  0.14101  3.39974  2.76565      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     10   3.34671  0.14101  3.39974  2.76565     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     11   0.15219  3.30544  2.75304  3.20013     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     12   2.89459  3.51128  0.12588  3.40817     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     13   2.89459  3.51128  0.12588  3.40817     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     14   0.15219  3.30544  2.75304  3.20013     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     15   3.01370  2.54736  3.06469  0.19124     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     16   2.89459  3.51128  0.12588  3.40817     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     17   2.89459  3.51128  0.12588  3.40817     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     18   2.89459  3.51128  0.12588  3.40817     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     19   3.34671  0.14101  3.39974  2.76565     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     20   2.89459  3.51128  0.12588  3.40817     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     21   0.15219  3.30544  2.75304  3.20013     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     22   2.89459  3.51128  0.12588  3.40817     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     23   2.89459  3.51128  0.12588  3.40817     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     24   3.34671  0.14101  3.39974  2.76565     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     25   3.34671  0.14101  3.39974  2.76565     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     26   0.15219  3.30544  2.75304  3.20013     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     27   3.34671  0.14101  3.39974  2.76565     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     28   3.34671  0.14101  3.39974  2.76565     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     29   3.34671  0.14101  3.39974  2.76565     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     30   2.89459  3.51128  0.12588  3.40817     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     31   3.34671  0.14101  3.39974  2.76565     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     32   3.34671  0.14101  3.39974  2.76565     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     33   2.89459  3.51128  0.12588  3.40817     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     34   0.15219  3.30544  2.75304  3.20013     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     35   2.89459  3.51128  0.12588  3.40817     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     36   3.01370  2.54736  3.06469  0.19124     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     37   3.01370  2.54736  3.06469  0.19124     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     38   3.01370  2.54736  3.06469  0.19124     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     39   0.15219  3.30544  2.75304  3.20013     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     40   0.15219  3.30544  2.75304  3.20013     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     41   2.89459  3.51128  0.12588  3.40817     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     42   3.34671  0.14101  3.39974  2.76565     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     43   0.15219  3.30544  2.75304  3.20013     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     44   3.01370  2.54736  3.06469  0.19124     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03848  3.96985  3.96985  1.46634  0.26236  1.09861  0.40547
+     45   0.15219  3.30544  2.75304  3.20013     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01943  3.95079        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_twentyfive_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:22:33 2012
+NSEQ  6
+EFFN  3.284180
+CKSUM 3558168622
+STATS LOCAL MSV       -8.0853  0.71933
+STATS LOCAL VITERBI   -7.5841  0.71933
+STATS LOCAL FORWARD   -3.7451  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.28014  1.32058  1.61205  1.36437
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  0.00000        *
+      1   3.07610  2.58718  3.12474  0.18071      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+      2   3.07610  2.58718  3.12474  0.18071      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+      3   3.07610  2.58718  3.12474  0.18071      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+      4   3.07610  2.58718  3.12474  0.18071      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+      5   2.93885  3.57515  0.11855  3.47852      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+      6   0.14354  3.36786  2.79386  3.26835      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+      7   3.41881  0.13193  3.46887  2.81857      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+      8   3.41881  0.13193  3.46887  2.81857      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+      9   3.07610  2.58718  3.12474  0.18071      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     10   3.41881  0.13193  3.46887  2.81857     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     11   0.14354  3.36786  2.79386  3.26835     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     12   2.93885  3.57515  0.11855  3.47852     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     13   3.07610  2.58718  3.12474  0.18071     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     14   3.07610  2.58718  3.12474  0.18071     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     15   3.41881  0.13193  3.46887  2.81857     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     16   0.14354  3.36786  2.79386  3.26835     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     17   2.93885  3.57515  0.11855  3.47852     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     18   0.14354  3.36786  2.79386  3.26835     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     19   3.41881  0.13193  3.46887  2.81857     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     20   0.14354  3.36786  2.79386  3.26835     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     21   0.14354  3.36786  2.79386  3.26835     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     22   2.93885  3.57515  0.11855  3.47852     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     23   2.93885  3.57515  0.11855  3.47852     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     24   3.41881  0.13193  3.46887  2.81857     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     25   3.07610  2.58718  3.12474  0.18071     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     26   0.14354  3.36786  2.79386  3.26835     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     27   3.41881  0.13193  3.46887  2.81857     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     28   3.41881  0.13193  3.46887  2.81857     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     29   3.41881  0.13193  3.46887  2.81857     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     30   2.93885  3.57515  0.11855  3.47852     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     31   3.41881  0.13193  3.46887  2.81857     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     32   3.41881  0.13193  3.46887  2.81857     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     33   2.93885  3.57515  0.11855  3.47852     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     34   0.14354  3.36786  2.79386  3.26835     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     35   0.14354  3.36786  2.79386  3.26835     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     36   3.07610  2.58718  3.12474  0.18071     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     37   3.07610  2.58718  3.12474  0.18071     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     38   3.07610  2.58718  3.12474  0.18071     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     39   0.14354  3.36786  2.79386  3.26835     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     40   0.14354  3.36786  2.79386  3.26835     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     41   2.93885  3.57515  0.11855  3.47852     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     42   3.41881  0.13193  3.46887  2.81857     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     43   0.14354  3.36786  2.79386  3.26835     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     44   3.07610  2.58718  3.12474  0.18071     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
+     45   0.14354  3.36786  2.79386  3.26835     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01875  3.98605        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_twentyfour_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:22:20 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 585099399
+STATS LOCAL MSV       -7.5304  0.72797
+STATS LOCAL VITERBI   -8.2378  0.72797
+STATS LOCAL FORWARD   -3.2800  0.72797
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34335  1.39907  1.37294  1.43195
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.81865  0.23582  2.88868  2.35662      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.57915  2.25909  2.64442  0.28946      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   0.23862  2.84929  2.43386  2.70756     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.57915  2.25909  2.64442  0.28946     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_twentynine_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:23:14 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 948472287
+STATS LOCAL MSV       -7.5165  0.72789
+STATS LOCAL VITERBI   -8.3237  0.72789
+STATS LOCAL FORWARD   -3.1789  0.72789
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.31998  1.30160  1.25870  1.73307
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   0.23862  2.84929  2.43386  2.70756      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.23862  2.84929  2.43386  2.70756     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   0.23862  2.84929  2.43386  2.70756     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.53331  3.02441  0.20344  2.88069     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   1.03732  1.95876  1.96551  1.00928     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.81865  0.23582  2.88868  2.35662     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_twentyseven_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:22:53 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3585155037
+STATS LOCAL MSV       -7.6411  0.72790
+STATS LOCAL VITERBI   -8.1958  0.72790
+STATS LOCAL FORWARD   -3.1897  0.72790
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.43267  1.24706  1.24508  1.68167
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.81865  0.23582  2.88868  2.35662      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.53331  3.02441  0.20344  2.88069      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   0.23862  2.84929  2.43386  2.70756      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   2.81865  0.23582  2.88868  2.35662      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   2.81865  0.23582  2.88868  2.35662      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   0.23862  2.84929  2.43386  2.70756     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.81865  0.23582  2.88868  2.35662     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   0.23862  2.84929  2.43386  2.70756     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.53331  3.02441  0.20344  2.88069     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.53331  3.02441  0.20344  2.88069     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.81865  0.23582  2.88868  2.35662     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.53331  3.02441  0.20344  2.88069     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   2.53331  3.02441  0.20344  2.88069     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   0.92825  2.28391  0.95698  2.13014     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.81865  0.23582  2.88868  2.35662     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.57915  2.25909  2.64442  0.28946     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   2.81865  0.23582  2.88868  2.35662     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.53331  3.02441  0.20344  2.88069     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.81865  0.23582  2.88868  2.35662     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.57915  2.25909  2.64442  0.28946     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   0.23862  2.84929  2.43386  2.70756     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   2.53331  3.02441  0.20344  2.88069     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   2.57915  2.25909  2.64442  0.28946     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.57915  2.25909  2.64442  0.28946     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.57915  2.25909  2.64442  0.28946     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   0.23862  2.84929  2.43386  2.70756     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.53331  3.02441  0.20344  2.88069     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   2.81865  0.23582  2.88868  2.35662     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   0.23862  2.84929  2.43386  2.70756     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   0.23862  2.84929  2.43386  2.70756     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_twentysix_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:22:44 2012
+NSEQ  7
+EFFN  3.216309
+CKSUM 3292637804
+STATS LOCAL MSV       -8.0713  0.71932
+STATS LOCAL VITERBI   -7.7834  0.71932
+STATS LOCAL FORWARD   -4.0416  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.16267  1.39809  1.44531  1.58666
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  0.00000        *
+      1   0.14656  3.34560  2.77935  3.24400      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      2   2.92319  3.55246  0.12110  3.45350      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      3   3.39312  0.13508  3.44425  2.79979      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      4   0.14656  3.34560  2.77935  3.24400      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      5   2.92319  3.55246  0.12110  3.45350      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      6   0.14656  3.34560  2.77935  3.24400      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      7   3.39312  0.13508  3.44425  2.79979      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      8   3.39312  0.13508  3.44425  2.79979      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+      9   3.05375  2.57294  3.10323  0.18440      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     10   3.39312  0.13508  3.44425  2.79979     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     11   3.05375  2.57294  3.10323  0.18440     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     12   2.92319  3.55246  0.12110  3.45350     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     13   0.14656  3.34560  2.77935  3.24400     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     14   3.05375  2.57294  3.10323  0.18440     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     15   3.39312  0.13508  3.44425  2.79979     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     16   0.14656  3.34560  2.77935  3.24400     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     17   2.92319  3.55246  0.12110  3.45350     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     18   2.92319  3.55246  0.12110  3.45350     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     19   0.14656  3.34560  2.77935  3.24400     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     20   0.14656  3.34560  2.77935  3.24400     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     21   0.14656  3.34560  2.77935  3.24400     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     22   2.92319  3.55246  0.12110  3.45350     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     23   0.14656  3.34560  2.77935  3.24400     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     24   3.39312  0.13508  3.44425  2.79979     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     25   3.05375  2.57294  3.10323  0.18440     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     26   0.14656  3.34560  2.77935  3.24400     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     27   3.39312  0.13508  3.44425  2.79979     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     28   3.39312  0.13508  3.44425  2.79979     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     29   3.39312  0.13508  3.44425  2.79979     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     30   2.92319  3.55246  0.12110  3.45350     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     31   3.39312  0.13508  3.44425  2.79979     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     32   3.05375  2.57294  3.10323  0.18440     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     33   2.92319  3.55246  0.12110  3.45350     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     34   0.14656  3.34560  2.77935  3.24400     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     35   2.92319  3.55246  0.12110  3.45350     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     36   3.05375  2.57294  3.10323  0.18440     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     37   3.05375  2.57294  3.10323  0.18440     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     38   3.05375  2.57294  3.10323  0.18440     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     39   0.14656  3.34560  2.77935  3.24400     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     40   0.14656  3.34560  2.77935  3.24400     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     41   2.92319  3.55246  0.12110  3.45350     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     42   3.39312  0.13508  3.44425  2.79979     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     43   0.14656  3.34560  2.77935  3.24400     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     44   3.05375  2.57294  3.10323  0.18440     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
+     45   0.14656  3.34560  2.77935  3.24400     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01899  3.97336        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_twentythree_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:21:38 2012
+NSEQ  5
+EFFN  3.139648
+CKSUM 4105697300
+STATS LOCAL MSV       -8.2688  0.71933
+STATS LOCAL VITERBI   -7.5622  0.71933
+STATS LOCAL FORWARD   -4.0037  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.40230  1.33627  1.19527  1.66852
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  0.00000        *
+      1   0.15014  3.31984  2.76249  3.21585      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+      2   3.36335  0.13885  3.41571  2.77793      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+      3   2.90489  3.52608  0.12414  3.42445      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+      4   0.15014  3.31984  2.76249  3.21585      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+      5   2.90489  3.52608  0.12414  3.42445      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+      6   0.15014  3.31984  2.76249  3.21585      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+      7   3.36335  0.13885  3.41571  2.77793      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+      8   3.36335  0.13885  3.41571  2.77793      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+      9   3.02802  2.55652  3.07847  0.18876      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     10   3.36335  0.13885  3.41571  2.77793     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     11   0.15014  3.31984  2.76249  3.21585     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     12   2.90489  3.52608  0.12414  3.42445     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     13   2.90489  3.52608  0.12414  3.42445     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     14   3.02802  2.55652  3.07847  0.18876     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     15   3.36335  0.13885  3.41571  2.77793     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     16   0.15014  3.31984  2.76249  3.21585     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     17   2.90489  3.52608  0.12414  3.42445     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     18   2.90489  3.52608  0.12414  3.42445     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     19   3.36335  0.13885  3.41571  2.77793     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     20   2.90489  3.52608  0.12414  3.42445     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     21   2.90489  3.52608  0.12414  3.42445     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     22   2.90489  3.52608  0.12414  3.42445     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     23   2.90489  3.52608  0.12414  3.42445     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     24   3.36335  0.13885  3.41571  2.77793     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     25   3.02802  2.55652  3.07847  0.18876     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     26   0.15014  3.31984  2.76249  3.21585     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     27   3.36335  0.13885  3.41571  2.77793     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     28   3.36335  0.13885  3.41571  2.77793     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     29   3.36335  0.13885  3.41571  2.77793     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     30   2.90489  3.52608  0.12414  3.42445     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     31   3.36335  0.13885  3.41571  2.77793     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     32   3.02802  2.55652  3.07847  0.18876     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     33   2.90489  3.52608  0.12414  3.42445     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     34   0.15014  3.31984  2.76249  3.21585     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     35   2.90489  3.52608  0.12414  3.42445     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     36   3.02802  2.55652  3.07847  0.18876     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     37   3.02802  2.55652  3.07847  0.18876     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     38   3.02802  2.55652  3.07847  0.18876     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     39   0.15014  3.31984  2.76249  3.21585     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     40   0.15014  3.31984  2.76249  3.21585     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     41   2.90489  3.52608  0.12414  3.42445     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     42   3.36335  0.13885  3.41571  2.77793     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     43   0.15014  3.31984  2.76249  3.21585     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     44   3.02802  2.55652  3.07847  0.18876     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
+     45   0.15014  3.31984  2.76249  3.21585     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01927  3.95884        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_twentytwo_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:21:30 2012
+NSEQ  416
+EFFN  3.373779
+CKSUM 2904155972
+STATS LOCAL MSV       -7.7211  0.71932
+STATS LOCAL VITERBI   -7.7573  0.71932
+STATS LOCAL FORWARD   -3.6591  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47008  1.14522  1.31744  1.69217
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  0.00000        *
+      1   3.34205  0.14440  3.28352  2.78709      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+      2   3.39278  0.14047  3.44316  2.72615      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+      3   2.81506  3.53865  0.12892  3.44198      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+      4   3.38510  0.14215  3.43572  2.71163      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+      5   2.83375  3.54759  0.12702  3.45142      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+      6   0.13977  3.39648  2.81245  3.29969      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+      7   3.45179  0.12800  3.50045  2.84258      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+      8   3.45179  0.12800  3.50045  2.84258      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+      9   3.45179  0.12800  3.50045  2.84258      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     10   3.31724  0.15759  3.37000  2.58813     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     11   0.13977  3.39648  2.81245  3.29969     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     12   2.95881  3.60419  0.11538  3.51057     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     13   2.95881  3.60419  0.11538  3.51057     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     14   3.10501  2.60557  3.15254  0.17606     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     15   3.20439  0.14712  3.37927  2.77820     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     16   0.13977  3.39648  2.81245  3.29969     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     17   2.95881  3.60419  0.11538  3.51057     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     18   2.55105  2.36340  2.08619  0.35134     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     19   3.45179  0.12800  3.50045  2.84258     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     20   2.76420  3.51369  0.13430  3.41557     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     21   2.95881  3.60419  0.11538  3.51057     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     22   2.95881  3.60419  0.11538  3.51057     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     23   0.13977  3.39648  2.81245  3.29969     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     24   3.45179  0.12800  3.50045  2.84258     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     25   2.63795  1.62383  2.70236  0.40902     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     26   0.13977  3.39648  2.81245  3.29969     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     27   3.45179  0.12800  3.50045  2.84258     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     28   3.45179  0.12800  3.50045  2.84258     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     29   3.45179  0.12800  3.50045  2.84258     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     30   2.95881  3.60419  0.11538  3.51057     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     31   3.45179  0.12800  3.50045  2.84258     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     32   3.10501  2.60557  3.15254  0.17606     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     33   2.83237  3.47661  0.13647  3.27592     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     34   0.13977  3.39648  2.81245  3.29969     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     35   2.59736  3.42566  0.15441  3.32199     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     36   3.10501  2.60557  3.15254  0.17606     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     37   3.10501  2.60557  3.15254  0.17606     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     38   3.10501  2.60557  3.15254  0.17606     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     39   0.13977  3.39648  2.81245  3.29969     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     40   0.13977  3.39648  2.81245  3.29969     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     41   2.95881  3.60419  0.11538  3.51057     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     42   3.45179  0.12800  3.50045  2.84258     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     43   0.13977  3.39648  2.81245  3.29969     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     44   3.10501  2.60557  3.15254  0.17606     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.02066  4.02066  1.46634  0.26236  1.09861  0.40547
+     45   0.13977  3.39648  2.81245  3.29969     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01844  4.00255        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Tracheophyta_4_LSU_start_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Feb 19 00:11:02 2012
+NSEQ  88
+EFFN  3.730225
+CKSUM 289705699
+STATS LOCAL MSV       -7.0698  0.71932
+STATS LOCAL VITERBI   -7.7391  0.71932
+STATS LOCAL FORWARD   -3.8541  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.47805  1.22403  1.23030  1.68378
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  0.00000        *
+      1   1.27419  1.16179  2.07688  1.26551      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+      2   2.28831  0.85829  2.43975  0.94806      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+      3   3.03087  3.71007  0.10461  3.62777      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+      4   3.57309  0.11469  3.61641  2.92985      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+      5   3.03087  3.71007  0.10461  3.62777      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+      6   0.12678  3.50230  2.88068  3.41576      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+      7   3.57309  0.11469  3.61641  2.92985      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+      8   3.57309  0.11469  3.61641  2.92985      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+      9   3.57309  0.11469  3.61641  2.92985      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     10   3.57309  0.11469  3.61641  2.92985     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     11   0.12678  3.50230  2.88068  3.41576     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     12   3.03087  3.71007  0.10461  3.62777     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     13   3.03087  3.71007  0.10461  3.62777     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     14   3.21354  2.67441  3.25685  0.15978     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     15   3.48081  0.13319  3.52743  2.74053     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     16   0.12678  3.50230  2.88068  3.41576     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     17   3.03087  3.71007  0.10461  3.62777     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     18   2.59203  3.50425  0.14857  3.40749     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     19   3.48923  0.13143  3.53554  2.75682     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     20   2.86666  3.64130  0.11844  3.55481     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     21   3.03087  3.71007  0.10461  3.62777     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     22   3.03087  3.71007  0.10461  3.62777     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     23   0.65536  2.61447  1.12942  2.47315     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     24   3.11117  0.23074  3.17034  2.12428     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     25   3.13072  2.46267  3.17737  0.18704     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     26   0.12678  3.50230  2.88068  3.41576     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     27   3.57309  0.11469  3.61641  2.92985     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     28   3.57309  0.11469  3.61641  2.92985     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     29   3.57309  0.11469  3.61641  2.92985     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     30   3.03087  3.71007  0.10461  3.62777     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     31   3.57309  0.11469  3.61641  2.92985     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     32   3.21354  2.67441  3.25685  0.15978     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     33   3.03087  3.71007  0.10461  3.62777     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     34   0.12678  3.50230  2.88068  3.41576     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     35   2.52711  3.46798  0.15725  3.36850     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     36   3.21354  2.67441  3.25685  0.15978     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     37   3.21354  2.67441  3.25685  0.15978     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     38   3.21354  2.67441  3.25685  0.15978     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     39   0.12678  3.50230  2.88068  3.41576     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     40   0.12678  3.50230  2.88068  3.41576     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     41   3.03087  3.71007  0.10461  3.62777     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     42   3.57309  0.11469  3.61641  2.92985     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     43   0.12678  3.50230  2.88068  3.41576     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     44   3.21354  2.67441  3.25685  0.15978     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03431  4.08265  4.08265  1.46634  0.26236  1.09861  0.40547
+     45   0.12678  3.50230  2.88068  3.41576     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01730  4.06564        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Tracheophyta_1_SSU_end_five_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 22:45:55 2012
+NSEQ  2465
+EFFN  3.455687
+CKSUM 1242947486
+STATS LOCAL MSV       -7.7138  0.71931
+STATS LOCAL VITERBI   -7.6652  0.71931
+STATS LOCAL FORWARD   -4.0912  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.32651  1.63232  1.19484  1.44236
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  0.00000        *
+      1   0.13651  3.42193  2.82892  3.32757      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+      2   2.87155  3.58379  0.12201  3.49072      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+      3   3.13087  2.62199  3.17740  0.17201      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+      4   3.34613  0.14711  3.30399  2.73574      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+      5   2.74125  3.52096  0.13541  3.42407      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+      6   3.13087  2.62199  3.17740  0.17201      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+      7   0.13651  3.42193  2.82892  3.32757      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+      8   0.14488  3.38910  2.74880  3.29341      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03618  4.03525  4.02567  1.46634  0.26236  1.09861  0.40547
+      9   3.48072  0.12467  3.52813  2.86353      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03601  4.03508  4.03508  1.46634  0.26236  1.09223  0.40867
+     10   0.13651  3.42193  2.82892  3.32757     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     11   0.13651  3.42193  2.82892  3.32757     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     12   2.97637  3.62986  0.11266  3.53894     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     13   2.97637  3.62986  0.11266  3.53894     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03635  4.03525  4.01630  1.46634  0.26236  1.09861  0.40547
+     14   3.13027  2.62161  3.17682  0.17211     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03602  4.03492  4.03492  1.46634  0.26236  1.08601  0.41182
+     15   3.05631  2.43793  3.10554  0.19748     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     16   2.95149  2.59145  3.10049  0.18898     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03654  4.03525  4.00658  1.46634  0.26236  1.09861  0.40547
+     17   3.32248  0.15921  3.37495  2.56524     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03602  4.03474  4.03474  1.46634  0.26236  1.07959  0.41511
+     18   3.37735  0.14191  3.35769  2.75915     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     19   2.83503  3.44657  0.13154  3.42087     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     20   3.09420  2.52888  3.14200  0.18423     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     21   0.13651  3.42193  2.82892  3.32757     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     22   2.97637  3.62986  0.11266  3.53894     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     23   2.87064  3.53577  0.12816  3.36711     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     24   3.04630  2.59008  2.98834  0.18985     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     25   2.93777  3.43823  0.12432  3.44838     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04076  4.03525  3.80511  1.46634  0.26236  1.09861  0.40547
+     26   0.13752  3.41397  2.82377  3.31885     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03617  4.03067  4.03067  1.46634  0.26236  0.95121  0.48820
+     27   0.15869  3.24292  2.74030  3.14323     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03688  4.03525  3.98862  1.46634  0.26236  1.09861  0.40547
+     28   3.47937  0.12482  3.52685  2.86256     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03603  4.03441  4.03441  1.46634  0.26236  1.06776  0.42125
+     29   3.42591  0.13605  3.47498  2.75322     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     30   3.13087  2.62199  3.17740  0.17201     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     31   2.88935  3.59189  0.12034  3.49926     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     32   3.38192  0.14107  3.36424  2.76456     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     33   2.72561  3.35497  0.14585  3.34395     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04050  4.03525  3.81647  1.46634  0.26236  1.09861  0.40547
+     34   2.73371  3.51155  0.13667  3.41384     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03777  4.03092  3.94736  1.46634  0.26236  0.96596  0.47903
+     35   0.13689  3.41896  2.82700  3.32431     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03607  4.03354  4.03354  1.46634  0.26236  1.03799  0.43722
+     36   0.16310  3.32144  2.59676  3.22186     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     37   2.97637  3.62986  0.11266  3.53894     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     38   2.88935  3.59189  0.12034  3.49926     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     39   0.13651  3.42193  2.82892  3.32757     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     40   3.13087  2.62199  3.17740  0.17201     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     41   3.28730  0.13857  3.43663  2.81560     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     42   0.14508  3.38831  2.74693  3.29259     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     43   3.13087  2.62199  3.17740  0.17201     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     44   3.10129  2.54646  3.14883  0.18182     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03600  4.03525  4.03525  1.46634  0.26236  1.09861  0.40547
+     45   2.62394  3.31301  0.16145  3.21467     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01816  4.01742        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Tracheophyta_1_SSU_end_four_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 22:45:45 2012
+NSEQ  3
+EFFN  3.000000
+CKSUM 1668200381
+STATS LOCAL MSV       -8.0335  0.72044
+STATS LOCAL VITERBI   -7.6660  0.72044
+STATS LOCAL FORWARD   -4.1391  0.72044
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27287  1.70168  1.30718  1.32045
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
+      1   0.15719  3.27118  2.73043  3.16274      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      2   2.86982  3.47591  0.13017  3.36931      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      3   2.97980  2.52563  3.03204  0.19727      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      4   3.30705  0.14631  3.36166  2.73626      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      5   2.86982  3.47591  0.13017  3.36931      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      6   2.97980  2.52563  3.03204  0.19727      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      7   0.15719  3.27118  2.73043  3.16274      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      8   0.15719  3.27118  2.73043  3.16274      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+      9   3.30705  0.14631  3.36166  2.73626      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     10   0.15719  3.27118  2.73043  3.16274     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     11   0.15719  3.27118  2.73043  3.16274     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     12   2.86982  3.47591  0.13017  3.36931     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     13   2.86982  3.47591  0.13017  3.36931     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     14   2.97980  2.52563  3.03204  0.19727     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     15   0.15719  3.27118  2.73043  3.16274     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     16   2.97980  2.52563  3.03204  0.19727     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     17   3.30705  0.14631  3.36166  2.73626     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     18   2.97980  2.52563  3.03204  0.19727     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     19   2.86982  3.47591  0.13017  3.36931     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     20   2.97980  2.52563  3.03204  0.19727     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     21   0.15719  3.27118  2.73043  3.16274     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     22   2.86982  3.47591  0.13017  3.36931     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     23   2.86982  3.47591  0.13017  3.36931     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     24   2.97980  2.52563  3.03204  0.19727     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     25   2.86982  3.47591  0.13017  3.36931     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     26   0.15719  3.27118  2.73043  3.16274     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     27   0.15719  3.27118  2.73043  3.16274     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     28   3.30705  0.14631  3.36166  2.73626     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     29   3.30705  0.14631  3.36166  2.73626     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     30   2.97980  2.52563  3.03204  0.19727     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     31   2.86982  3.47591  0.13017  3.36931     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     32   3.30705  0.14631  3.36166  2.73626     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     33   0.15719  3.27118  2.73043  3.16274     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     34   2.86982  3.47591  0.13017  3.36931     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     35   0.15719  3.27118  2.73043  3.16274     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     36   2.97980  2.52563  3.03204  0.19727     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     37   2.86982  3.47591  0.13017  3.36931     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     38   2.86982  3.47591  0.13017  3.36931     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     39   0.15719  3.27118  2.73043  3.16274     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     40   2.97980  2.52563  3.03204  0.19727     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     41   3.30705  0.14631  3.36166  2.73626     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     42   0.15719  3.27118  2.73043  3.16274     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     43   2.97980  2.52563  3.03204  0.19727     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     44   2.97980  2.52563  3.03204  0.19727     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
+     45   2.97980  2.52563  3.03204  0.19727     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Tracheophyta_1_SSU_end_one_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 22:45:21 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3520144163
+STATS LOCAL MSV       -7.4050  0.72803
+STATS LOCAL VITERBI   -8.4014  0.72803
+STATS LOCAL FORWARD   -3.3486  0.72803
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23215  1.67157  1.30831  1.38588
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   0.23862  2.84929  2.43386  2.70756      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.57915  2.25909  2.64442  0.28946      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   0.23862  2.84929  2.43386  2.70756      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   0.23862  2.84929  2.43386  2.70756     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.53331  3.02441  0.20344  2.88069     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   0.23862  2.84929  2.43386  2.70756     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   0.23862  2.84929  2.43386  2.70756     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Tracheophyta_1_SSU_end_three_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 22:45:36 2012
+NSEQ  4
+EFFN  3.269531
+CKSUM 1893084359
+STATS LOCAL MSV       -8.0441  0.71933
+STATS LOCAL VITERBI   -7.6633  0.71933
+STATS LOCAL FORWARD   -4.3760  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34926  1.54473  1.18124  1.51276
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  0.00000        *
+      1   0.14418  3.36310  2.79076  3.26314      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      2   2.93551  3.57031  0.11909  3.47317      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      3   3.07131  2.58413  3.12013  0.18149      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      4   3.41331  0.13259  3.46361  2.81457      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      5   2.93551  3.57031  0.11909  3.47317      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      6   3.07131  2.58413  3.12013  0.18149      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      7   0.14418  3.36310  2.79076  3.26314      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      8   0.14418  3.36310  2.79076  3.26314      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+      9   3.41331  0.13259  3.46361  2.81457      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     10   0.14418  3.36310  2.79076  3.26314     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     11   0.14418  3.36310  2.79076  3.26314     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     12   2.93551  3.57031  0.11909  3.47317     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     13   2.93551  3.57031  0.11909  3.47317     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     14   3.07131  2.58413  3.12013  0.18149     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     15   3.41331  0.13259  3.46361  2.81457     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     16   3.07131  2.58413  3.12013  0.18149     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     17   3.41331  0.13259  3.46361  2.81457     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     18   3.41331  0.13259  3.46361  2.81457     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     19   2.93551  3.57031  0.11909  3.47317     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     20   3.07131  2.58413  3.12013  0.18149     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     21   3.07131  2.58413  3.12013  0.18149     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     22   2.93551  3.57031  0.11909  3.47317     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     23   2.93551  3.57031  0.11909  3.47317     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     24   3.07131  2.58413  3.12013  0.18149     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     25   2.93551  3.57031  0.11909  3.47317     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     26   0.14418  3.36310  2.79076  3.26314     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     27   0.14418  3.36310  2.79076  3.26314     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     28   3.41331  0.13259  3.46361  2.81457     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     29   3.41331  0.13259  3.46361  2.81457     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     30   0.40008  2.74926  1.64707  2.61530     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     31   2.93551  3.57031  0.11909  3.47317     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     32   3.41331  0.13259  3.46361  2.81457     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     33   2.93551  3.57031  0.11909  3.47317     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     34   2.93551  3.57031  0.11909  3.47317     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     35   0.14418  3.36310  2.79076  3.26314     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     36   2.93551  3.57031  0.11909  3.47317     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     37   2.93551  3.57031  0.11909  3.47317     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     38   2.93551  3.57031  0.11909  3.47317     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     39   0.14418  3.36310  2.79076  3.26314     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     40   3.07131  2.58413  3.12013  0.18149     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     41   3.41331  0.13259  3.46361  2.81457     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     42   0.14418  3.36310  2.79076  3.26314     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     43   3.07131  2.58413  3.12013  0.18149     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     44   3.07131  2.58413  3.12013  0.18149     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
+     45   0.14418  3.36310  2.79076  3.26314     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01880  3.98333        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Tracheophyta_1_SSU_end_two_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Feb 16 22:45:28 2012
+NSEQ  2
+EFFN  2.000000
+CKSUM 3574096921
+STATS LOCAL MSV       -7.4187  0.72775
+STATS LOCAL VITERBI   -8.3649  0.72775
+STATS LOCAL FORWARD   -3.4400  0.72775
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.51814  1.52829  1.15981  1.38459
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
+      1   2.53331  3.02441  0.20344  2.88069      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      2   2.53331  3.02441  0.20344  2.88069      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      3   2.57915  2.25909  2.64442  0.28946      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      4   2.81865  0.23582  2.88868  2.35662      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      5   2.53331  3.02441  0.20344  2.88069      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      6   2.57915  2.25909  2.64442  0.28946      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      7   0.23862  2.84929  2.43386  2.70756      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      8   0.23862  2.84929  2.43386  2.70756      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+      9   2.81865  0.23582  2.88868  2.35662      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     10   2.81865  0.23582  2.88868  2.35662     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     11   2.57915  2.25909  2.64442  0.28946     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     12   2.53331  3.02441  0.20344  2.88069     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     13   2.53331  3.02441  0.20344  2.88069     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     14   2.57915  2.25909  2.64442  0.28946     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     15   2.57915  2.25909  2.64442  0.28946     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     16   2.57915  2.25909  2.64442  0.28946     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     17   2.81865  0.23582  2.88868  2.35662     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     18   2.81865  0.23582  2.88868  2.35662     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     19   2.53331  3.02441  0.20344  2.88069     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     20   2.57915  2.25909  2.64442  0.28946     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     21   0.23862  2.84929  2.43386  2.70756     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     22   2.53331  3.02441  0.20344  2.88069     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     23   2.53331  3.02441  0.20344  2.88069     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     24   2.57915  2.25909  2.64442  0.28946     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     25   2.53331  3.02441  0.20344  2.88069     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     26   0.23862  2.84929  2.43386  2.70756     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     27   0.23862  2.84929  2.43386  2.70756     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     28   2.81865  0.23582  2.88868  2.35662     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     29   2.81865  0.23582  2.88868  2.35662     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     30   2.57915  2.25909  2.64442  0.28946     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     31   2.53331  3.02441  0.20344  2.88069     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     32   2.81865  0.23582  2.88868  2.35662     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     33   2.53331  3.02441  0.20344  2.88069     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     34   2.53331  3.02441  0.20344  2.88069     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     35   0.23862  2.84929  2.43386  2.70756     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     36   0.23862  2.84929  2.43386  2.70756     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     37   2.53331  3.02441  0.20344  2.88069     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     38   2.53331  3.02441  0.20344  2.88069     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     39   0.23862  2.84929  2.43386  2.70756     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     40   2.57915  2.25909  2.64442  0.28946     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     41   2.81865  0.23582  2.88868  2.35662     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     42   0.23862  2.84929  2.43386  2.70756     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     43   2.57915  2.25909  2.64442  0.28946     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     44   2.57915  2.25909  2.64442  0.28946     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
+     45   2.53331  3.02441  0.20344  2.88069     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/T.hmm.h3f
Binary file ITSx_db/HMMs/T.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/T.hmm.h3i
Binary file ITSx_db/HMMs/T.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/T.hmm.h3m
Binary file ITSx_db/HMMs/T.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/T.hmm.h3p
Binary file ITSx_db/HMMs/T.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/U.hmm
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ITSx_db/HMMs/U.hmm	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,620 @@
+HMMER3/b [3.0 | March 2010]
+NAME  3_End_Eustigmatophyceae_58S_end_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Sep 25 01:39:32 2011
+NSEQ  6
+EFFN  3.336914
+CKSUM 3393550359
+STATS LOCAL MSV       -8.0163  0.71932
+STATS LOCAL VITERBI   -7.6944  0.71932
+STATS LOCAL FORWARD   -4.0151  0.71932
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.93226  1.59605  1.19721  1.04854
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  0.00000        *
+      1   3.43835  0.12958  3.48758  2.83281      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      2   2.95070  3.59237  0.11666  3.49752      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      3   3.43835  0.12958  3.48758  2.83281      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      4   3.09320  2.59806  3.14118  0.17794      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      5   3.09320  2.59806  3.14118  0.17794      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      6   3.09320  2.59806  3.14118  0.17794      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      7   3.43835  0.12958  3.48758  2.83281      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      8   2.95070  3.59237  0.11666  3.49752      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+      9   2.95070  3.59237  0.11666  3.49752      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     10   2.95070  3.59237  0.11666  3.49752     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     11   0.14130  3.38481  2.80488  3.28690     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     12   3.09320  2.59806  3.14118  0.17794     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     13   0.14130  3.38481  2.80488  3.28690     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     14   3.09320  2.59806  3.14118  0.17794     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     15   2.95070  3.59237  0.11666  3.49752     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     16   3.43835  0.12958  3.48758  2.83281     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     17   3.43835  0.12958  3.48758  2.83281     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     18   3.43835  0.12958  3.48758  2.83281     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     19   2.95070  3.59237  0.11666  3.49752     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     20   3.09320  2.59806  3.14118  0.17794     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     21   3.09320  2.59806  3.14118  0.17794     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     22   0.14130  3.38481  2.80488  3.28690     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     23   2.95070  3.59237  0.11666  3.49752     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     24   3.43835  0.12958  3.48758  2.83281     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     25   0.14130  3.38481  2.80488  3.28690     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     26   3.09320  2.59806  3.14118  0.17794     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     27   2.95070  3.59237  0.11666  3.49752     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     28   3.09320  2.59806  3.14118  0.17794     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     29   3.09320  2.59806  3.14118  0.17794     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     30   3.09320  2.59806  3.14118  0.17794     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     31   2.95070  3.59237  0.11666  3.49752     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     32   3.09320  2.59806  3.14118  0.17794     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     33   3.09320  2.59806  3.14118  0.17794     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     34   2.95070  3.59237  0.11666  3.49752     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     35   2.95070  3.59237  0.11666  3.49752     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     36   0.14130  3.38481  2.80488  3.28690     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     37   2.95070  3.59237  0.11666  3.49752     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     38   3.09320  2.59806  3.14118  0.17794     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     39   2.95070  3.59237  0.11666  3.49752     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     40   3.09320  2.59806  3.14118  0.17794     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     41   3.43835  0.12958  3.48758  2.83281     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     42   3.09320  2.59806  3.14118  0.17794     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     43   2.95070  3.59237  0.11666  3.49752     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     44   3.09320  2.59806  3.14118  0.17794     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
+     45   3.09320  2.59806  3.14118  0.17794     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01856  3.99580        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  2_5.8_Eustigmatophyceae_58S_start_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Sep 25 01:34:03 2011
+NSEQ  6
+EFFN  3.213867
+CKSUM 1922503689
+STATS LOCAL MSV       -8.1335  0.71933
+STATS LOCAL VITERBI   -7.6652  0.71933
+STATS LOCAL FORWARD   -4.1546  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.22065  1.26567  1.52763  1.58055
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  0.00000        *
+      1   3.39218  0.13520  3.44336  2.79911      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+      2   0.14667  3.34479  2.77882  3.24311      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+      3   0.14667  3.34479  2.77882  3.24311      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+      4   3.39218  0.13520  3.44336  2.79911      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+      5   3.05294  2.57242  3.10245  0.18453      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+      6   3.05294  2.57242  3.10245  0.18453      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+      7   3.05294  2.57242  3.10245  0.18453      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+      8   3.39218  0.13520  3.44336  2.79911      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+      9   0.14667  3.34479  2.77882  3.24311      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     10   2.92262  3.55163  0.12119  3.45259     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     11   3.39218  0.13520  3.44336  2.79911     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     12   0.14667  3.34479  2.77882  3.24311     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     13   0.14667  3.34479  2.77882  3.24311     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     14   3.39218  0.13520  3.44336  2.79911     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     15   2.92262  3.55163  0.12119  3.45259     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     16   2.92262  3.55163  0.12119  3.45259     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     17   0.14667  3.34479  2.77882  3.24311     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     18   3.05294  2.57242  3.10245  0.18453     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     19   2.92262  3.55163  0.12119  3.45259     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     20   3.05294  2.57242  3.10245  0.18453     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     21   3.39218  0.13520  3.44336  2.79911     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     22   3.05294  2.57242  3.10245  0.18453     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     23   3.05294  2.57242  3.10245  0.18453     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     24   2.92262  3.55163  0.12119  3.45259     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     25   2.92262  3.55163  0.12119  3.45259     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     26   3.39218  0.13520  3.44336  2.79911     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     27   3.05294  2.57242  3.10245  0.18453     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     28   3.39218  0.13520  3.44336  2.79911     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     29   3.39218  0.13520  3.44336  2.79911     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     30   3.39218  0.13520  3.44336  2.79911     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     31   0.14667  3.34479  2.77882  3.24311     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     32   3.39218  0.13520  3.44336  2.79911     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     33   0.14667  3.34479  2.77882  3.24311     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     34   0.14667  3.34479  2.77882  3.24311     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     35   3.39218  0.13520  3.44336  2.79911     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     36   2.92262  3.55163  0.12119  3.45259     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     37   0.14667  3.34479  2.77882  3.24311     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     38   3.05294  2.57242  3.10245  0.18453     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     39   2.92262  3.55163  0.12119  3.45259     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     40   0.14667  3.34479  2.77882  3.24311     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     41   0.14667  3.34479  2.77882  3.24311     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     42   2.92262  3.55163  0.12119  3.45259     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     43   0.14667  3.34479  2.77882  3.24311     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     44   0.14667  3.34479  2.77882  3.24311     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03764  3.99155  3.99155  1.46634  0.26236  1.09861  0.40547
+     45   3.39218  0.13520  3.44336  2.79911     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01900  3.97290        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  4_LSU_Eustigmatophyceae_4_LSU_start_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Sun Sep 25 01:43:21 2011
+NSEQ  5
+EFFN  3.315430
+CKSUM 2420342418
+STATS LOCAL MSV       -8.0313  0.71931
+STATS LOCAL VITERBI   -7.5738  0.71931
+STATS LOCAL FORWARD   -3.9568  0.71931
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23266  1.26091  1.60118  1.49866
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  0.00000        *
+      1   3.08626  2.59365  3.13451  0.17906      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      2   3.08626  2.59365  3.13451  0.17906      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      3   3.43043  0.13053  3.48000  2.82705      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      4   2.94591  3.58540  0.11742  3.48982      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      5   2.94591  3.58540  0.11742  3.48982      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      6   0.14220  3.37794  2.80041  3.27938      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      7   3.43043  0.13053  3.48000  2.82705      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      8   3.43043  0.13053  3.48000  2.82705      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+      9   3.08626  2.59365  3.13451  0.17906      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     10   3.43043  0.13053  3.48000  2.82705     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     11   3.43043  0.13053  3.48000  2.82705     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     12   0.14220  3.37794  2.80041  3.27938     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     13   0.14220  3.37794  2.80041  3.27938     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     14   3.08626  2.59365  3.13451  0.17906     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     15   3.43043  0.13053  3.48000  2.82705     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     16   0.14220  3.37794  2.80041  3.27938     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     17   0.14220  3.37794  2.80041  3.27938     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     18   2.94591  3.58540  0.11742  3.48982     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     19   3.43043  0.13053  3.48000  2.82705     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     20   0.14220  3.37794  2.80041  3.27938     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     21   0.14220  3.37794  2.80041  3.27938     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     22   2.94591  3.58540  0.11742  3.48982     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     23   2.94591  3.58540  0.11742  3.48982     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     24   3.43043  0.13053  3.48000  2.82705     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     25   3.08626  2.59365  3.13451  0.17906     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     26   0.14220  3.37794  2.80041  3.27938     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     27   3.43043  0.13053  3.48000  2.82705     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     28   3.43043  0.13053  3.48000  2.82705     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     29   3.43043  0.13053  3.48000  2.82705     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     30   2.94591  3.58540  0.11742  3.48982     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     31   3.43043  0.13053  3.48000  2.82705     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     32   3.08626  2.59365  3.13451  0.17906     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     33   2.94591  3.58540  0.11742  3.48982     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     34   0.33543  2.85734  1.81858  2.72885     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     35   0.14220  3.37794  2.80041  3.27938     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     36   3.08626  2.59365  3.13451  0.17906     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     37   3.08626  2.59365  3.13451  0.17906     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     38   3.08626  2.59365  3.13451  0.17906     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     39   0.14220  3.37794  2.80041  3.27938     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     40   0.14220  3.37794  2.80041  3.27938     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     41   2.94591  3.58540  0.11742  3.48982     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     42   3.43043  0.13053  3.48000  2.82705     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     43   0.14220  3.37794  2.80041  3.27938     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     44   3.08626  2.59365  3.13451  0.17906     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03694  4.01013  4.01013  1.46634  0.26236  1.09861  0.40547
+     45   0.14220  3.37794  2.80041  3.27938     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01864  3.99184        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/b [3.0 | March 2010]
+NAME  1_SSU_Eustigmatophyceae_1_SSU_end_long
+LENG  45
+ALPH  DNA
+RF    no
+CS    no
+MAP   yes
+DATE  Thu Jan 19 22:34:10 2012
+NSEQ  6
+EFFN  3.225586
+CKSUM 778367950
+STATS LOCAL MSV       -8.0048  0.71933
+STATS LOCAL VITERBI   -7.6831  0.71933
+STATS LOCAL FORWARD   -4.1090  0.71933
+HMM          A        C        G        T   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.27189  1.62645  1.24659  1.44567
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  0.00000        *
+      1   0.14614  3.34867  2.78135  3.24736      1 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      2   2.92536  3.55560  0.12074  3.45696      2 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      3   3.05683  2.57491  3.10619  0.18389      3 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      4   3.39667  0.13464  3.44765  2.80239      4 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      5   2.92536  3.55560  0.12074  3.45696      5 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      6   3.05683  2.57491  3.10619  0.18389      6 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      7   0.14614  3.34867  2.78135  3.24736      7 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      8   0.14614  3.34867  2.78135  3.24736      8 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+      9   3.39667  0.13464  3.44765  2.80239      9 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     10   0.14614  3.34867  2.78135  3.24736     10 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     11   0.14614  3.34867  2.78135  3.24736     11 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     12   2.92536  3.55560  0.12074  3.45696     12 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     13   2.92536  3.55560  0.12074  3.45696     13 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     14   3.05683  2.57491  3.10619  0.18389     14 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     15   3.05683  2.57491  3.10619  0.18389     15 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     16   3.05683  2.57491  3.10619  0.18389     16 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     17   3.39667  0.13464  3.44765  2.80239     17 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     18   3.39667  0.13464  3.44765  2.80239     18 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     19   2.92536  3.55560  0.12074  3.45696     19 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     20   3.05683  2.57491  3.10619  0.18389     20 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     21   0.14614  3.34867  2.78135  3.24736     21 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     22   2.92536  3.55560  0.12074  3.45696     22 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     23   2.92536  3.55560  0.12074  3.45696     23 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     24   3.05683  2.57491  3.10619  0.18389     24 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     25   2.92536  3.55560  0.12074  3.45696     25 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     26   0.14614  3.34867  2.78135  3.24736     26 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     27   0.14614  3.34867  2.78135  3.24736     27 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     28   3.39667  0.13464  3.44765  2.80239     28 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     29   3.39667  0.13464  3.44765  2.80239     29 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     30   3.05683  2.57491  3.10619  0.18389     30 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     31   2.92536  3.55560  0.12074  3.45696     31 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     32   3.39667  0.13464  3.44765  2.80239     32 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     33   2.92536  3.55560  0.12074  3.45696     33 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     34   2.92536  3.55560  0.12074  3.45696     34 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     35   0.14614  3.34867  2.78135  3.24736     35 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     36   0.14614  3.34867  2.78135  3.24736     36 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     37   2.92536  3.55560  0.12074  3.45696     37 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     38   2.92536  3.55560  0.12074  3.45696     38 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     39   0.14614  3.34867  2.78135  3.24736     39 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     40   3.05683  2.57491  3.10619  0.18389     40 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     41   3.39667  0.13464  3.44765  2.80239     41 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     42   0.14614  3.34867  2.78135  3.24736     42 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     43   3.05683  2.57491  3.10619  0.18389     43 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     44   3.05683  2.57491  3.10619  0.18389     44 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
+     45   0.14614  3.34867  2.78135  3.24736     45 - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01896  3.97511        *  1.46634  0.26236  0.00000        *
+//
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/U.hmm.h3f
Binary file ITSx_db/HMMs/U.hmm.h3f has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/U.hmm.h3i
Binary file ITSx_db/HMMs/U.hmm.h3i has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/U.hmm.h3m
Binary file ITSx_db/HMMs/U.hmm.h3m has changed
diff -r 000000000000 -r f82c70f54bd7 ITSx_db/HMMs/U.hmm.h3p
Binary file ITSx_db/HMMs/U.hmm.h3p has changed
diff -r 000000000000 -r f82c70f54bd7 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Mar 24 12:02:48 2015 -0400
@@ -0,0 +1,6 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="hmmer" version="3.1b1">
+      <repository changeset_revision="007c736bf7e8" name="package_hmmer_3_1" owner="lionelguy" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>